Query 019783
Match_columns 336
No_of_seqs 247 out of 2351
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 1.8E-23 6.1E-28 185.3 10.7 135 99-234 49-193 (194)
2 2l0b_A E3 ubiquitin-protein li 99.4 3.8E-13 1.3E-17 104.9 7.4 64 271-336 14-77 (91)
3 1x4j_A Ring finger protein 38; 99.3 3.3E-13 1.1E-17 101.2 3.0 56 278-336 5-60 (75)
4 1iym_A EL5; ring-H2 finger, ub 99.1 6.5E-11 2.2E-15 83.0 3.8 39 297-336 4-43 (55)
5 2kiz_A E3 ubiquitin-protein li 99.1 8.3E-11 2.8E-15 86.4 4.5 42 294-336 10-51 (69)
6 2ep4_A Ring finger protein 24; 99.0 1.2E-10 4.2E-15 86.6 4.5 41 295-336 12-52 (74)
7 2ect_A Ring finger protein 126 99.0 1.8E-10 6E-15 86.6 4.3 41 295-336 12-52 (78)
8 2ecl_A Ring-box protein 2; RNF 99.0 2.5E-10 8.6E-15 86.9 3.4 39 297-336 14-64 (81)
9 2d8s_A Cellular modulator of i 98.9 3.5E-10 1.2E-14 86.2 3.6 39 295-335 12-55 (80)
10 2ecm_A Ring finger and CHY zin 98.9 7.3E-10 2.5E-14 77.4 3.8 39 297-336 4-43 (55)
11 3dpl_R Ring-box protein 1; ubi 98.9 4E-10 1.4E-14 90.4 1.4 39 297-336 36-89 (106)
12 1v87_A Deltex protein 2; ring- 98.8 1.8E-09 6.1E-14 87.0 3.9 37 297-334 24-75 (114)
13 3iib_A Peptidase M28; YP_92679 98.8 1E-08 3.5E-13 101.6 9.3 115 105-224 91-223 (444)
14 2ek8_A Aminopeptidase; metallo 98.8 1.5E-08 5.1E-13 99.6 10.3 91 118-215 91-181 (421)
15 2ea6_A Ring finger protein 4; 98.7 4.9E-09 1.7E-13 76.3 3.0 40 295-335 12-55 (69)
16 3ng2_A RNF4, snurf, ring finge 98.7 6E-09 2E-13 76.5 2.4 39 296-335 8-50 (71)
17 4a0k_B E3 ubiquitin-protein li 98.6 3.7E-09 1.3E-13 86.2 0.3 38 297-335 47-99 (117)
18 2xeu_A Ring finger protein 4; 98.6 8.5E-09 2.9E-13 73.9 1.6 38 297-335 2-43 (64)
19 2ct2_A Tripartite motif protei 98.6 3E-08 1E-12 75.7 4.5 40 295-335 12-52 (88)
20 2ecn_A Ring finger protein 141 98.6 2.6E-08 9.1E-13 73.0 3.8 36 295-335 12-47 (70)
21 1chc_A Equine herpes virus-1 r 98.6 3.3E-08 1.1E-12 72.0 3.7 36 297-335 4-39 (68)
22 2d8t_A Dactylidin, ring finger 98.5 3.9E-08 1.3E-12 72.5 3.4 38 295-336 12-49 (71)
23 2ecj_A Tripartite motif-contai 98.4 1.1E-07 3.8E-12 66.7 3.4 37 295-335 12-48 (58)
24 2ysj_A Tripartite motif-contai 98.4 3E-07 1E-11 65.9 4.5 37 295-335 17-53 (63)
25 2djb_A Polycomb group ring fin 98.4 2.2E-07 7.7E-12 68.5 3.7 38 295-335 12-49 (72)
26 4ap4_A E3 ubiquitin ligase RNF 98.3 1.4E-07 4.7E-12 77.1 1.8 40 296-336 5-48 (133)
27 3fed_A Glutamate carboxypeptid 98.3 6.1E-07 2.1E-11 93.6 6.8 98 118-217 125-268 (707)
28 2csy_A Zinc finger protein 183 98.3 5.6E-07 1.9E-11 67.8 4.4 37 295-335 12-48 (81)
29 2ct0_A Non-SMC element 1 homol 98.3 3.3E-07 1.1E-11 68.6 2.5 36 297-335 14-49 (74)
30 2yur_A Retinoblastoma-binding 98.2 7E-07 2.4E-11 66.3 3.9 37 295-335 12-49 (74)
31 2ysl_A Tripartite motif-contai 98.2 9.8E-07 3.4E-11 64.8 3.9 36 295-334 17-52 (73)
32 3kas_A Transferrin receptor pr 98.2 1E-06 3.4E-11 91.0 5.4 94 119-216 107-230 (640)
33 1g25_A CDK-activating kinase a 98.2 5.3E-07 1.8E-11 65.0 2.3 37 298-335 3-41 (65)
34 2ecy_A TNF receptor-associated 98.2 1.2E-06 4E-11 63.4 3.6 35 296-334 13-47 (66)
35 4ap4_A E3 ubiquitin ligase RNF 98.1 6.6E-07 2.3E-11 73.0 2.4 38 297-335 71-112 (133)
36 2ecw_A Tripartite motif-contai 98.1 2E-06 6.9E-11 64.7 3.8 37 295-335 16-52 (85)
37 3lrq_A E3 ubiquitin-protein li 98.1 1.4E-06 4.7E-11 68.6 2.6 36 297-335 21-56 (100)
38 2ecv_A Tripartite motif-contai 98.0 2.5E-06 8.7E-11 64.1 3.3 37 295-335 16-52 (85)
39 2egp_A Tripartite motif-contai 98.0 9.2E-07 3.2E-11 65.9 0.7 37 295-335 9-45 (79)
40 1vyx_A ORF K3, K3RING; zinc-bi 98.0 2.2E-06 7.7E-11 61.3 2.3 36 296-335 4-44 (60)
41 4ayc_A E3 ubiquitin-protein li 98.0 2.6E-06 9.1E-11 70.8 3.0 34 298-335 53-86 (138)
42 1t1h_A Gspef-atpub14, armadill 98.0 3.5E-06 1.2E-10 62.8 3.3 37 295-335 5-41 (78)
43 2y43_A E3 ubiquitin-protein li 98.0 2.6E-06 8.7E-11 66.6 2.7 35 298-335 22-56 (99)
44 2ckl_A Polycomb group ring fin 97.9 3.6E-06 1.2E-10 66.9 3.0 36 297-335 14-49 (108)
45 2ckl_B Ubiquitin ligase protei 97.9 5.3E-06 1.8E-10 70.9 3.0 36 297-335 53-88 (165)
46 3ztg_A E3 ubiquitin-protein li 97.8 1.3E-05 4.6E-10 61.5 4.1 37 295-335 10-47 (92)
47 3i6s_A Subtilisin-like proteas 97.8 1.3E-05 4.5E-10 82.9 4.4 83 124-216 261-345 (649)
48 3k1l_B Fancl; UBC, ring, RWD, 97.8 8.4E-06 2.9E-10 77.4 2.7 39 296-335 306-349 (381)
49 1jm7_A BRCA1, breast cancer ty 97.7 1.2E-05 4E-10 63.9 2.7 34 298-335 21-54 (112)
50 3fl2_A E3 ubiquitin-protein li 97.7 1.3E-05 4.3E-10 65.3 2.9 33 298-334 52-84 (124)
51 1y9z_A Alkaline serine proteas 97.7 4.4E-05 1.5E-09 75.2 7.1 71 146-216 272-349 (441)
52 3hct_A TNF receptor-associated 97.7 1.8E-05 6.1E-10 63.9 2.9 37 295-335 15-51 (118)
53 1bor_A Transcription factor PM 97.7 7.9E-06 2.7E-10 57.3 0.6 33 296-332 4-36 (56)
54 1wim_A KIAA0161 protein; ring 97.6 2E-05 6.9E-10 61.0 2.6 37 297-334 4-40 (94)
55 3l11_A E3 ubiquitin-protein li 97.6 1.5E-05 5.2E-10 63.9 1.5 35 297-335 14-48 (115)
56 1xf1_A C5A peptidase, SCP; hyd 97.6 7.8E-05 2.7E-09 80.1 7.3 65 146-213 279-343 (926)
57 1rmd_A RAG1; V(D)J recombinati 97.5 1.5E-05 5E-10 64.1 0.6 34 298-335 23-56 (116)
58 1z6u_A NP95-like ring finger p 97.4 3.8E-05 1.3E-09 64.9 1.9 34 298-335 78-111 (150)
59 1e4u_A Transcriptional repress 97.4 6.8E-05 2.3E-09 56.3 2.9 38 296-334 9-47 (78)
60 2y1n_A E3 ubiquitin-protein li 97.4 7.9E-05 2.7E-09 72.2 3.7 34 297-334 331-364 (389)
61 3knv_A TNF receptor-associated 97.3 8.9E-05 3E-09 62.0 2.6 36 296-335 29-64 (141)
62 1jm7_B BARD1, BRCA1-associated 97.1 0.00015 5E-09 58.4 1.5 34 298-334 22-55 (117)
63 4ic3_A E3 ubiquitin-protein li 96.8 0.00045 1.5E-08 50.9 2.2 31 298-332 24-55 (74)
64 2yu4_A E3 SUMO-protein ligase 96.7 0.00083 2.8E-08 51.9 3.2 36 296-335 5-41 (94)
65 2vje_A E3 ubiquitin-protein li 96.6 0.00074 2.5E-08 48.4 1.8 37 297-335 7-44 (64)
66 2kr4_A Ubiquitin conjugation f 96.5 0.0022 7.6E-08 48.6 4.3 37 295-335 11-47 (85)
67 2kre_A Ubiquitin conjugation f 96.4 0.0028 9.6E-08 49.6 4.2 37 295-335 26-62 (100)
68 2vje_B MDM4 protein; proto-onc 96.3 0.0019 6.4E-08 46.1 2.3 37 297-335 6-43 (63)
69 1wgm_A Ubiquitin conjugation f 96.2 0.0042 1.4E-07 48.4 4.3 37 295-335 19-56 (98)
70 2ea5_A Cell growth regulator w 96.1 0.0043 1.5E-07 45.0 3.7 31 296-330 13-44 (68)
71 2ecg_A Baculoviral IAP repeat- 96.0 0.0023 7.7E-08 47.1 1.8 30 298-331 25-55 (75)
72 2c2l_A CHIP, carboxy terminus 95.3 0.012 4.2E-07 53.3 4.3 37 295-335 205-241 (281)
73 2bay_A PRE-mRNA splicing facto 95.2 0.0083 2.9E-07 42.6 2.1 36 298-336 3-38 (61)
74 3t6p_A Baculoviral IAP repeat- 94.7 0.015 5.1E-07 55.5 2.9 32 297-332 294-326 (345)
75 2yho_A E3 ubiquitin-protein li 94.5 0.016 5.6E-07 43.1 2.2 31 298-332 18-49 (79)
76 2f42_A STIP1 homology and U-bo 94.2 0.024 8.2E-07 49.1 3.0 37 295-335 103-139 (179)
77 3htk_C E3 SUMO-protein ligase 94.2 0.029 9.9E-07 51.4 3.6 36 297-335 180-215 (267)
78 3nw0_A Non-structural maintena 92.1 0.058 2E-06 48.7 2.1 36 297-335 179-214 (238)
79 2lri_C Autoimmune regulator; Z 86.6 0.4 1.4E-05 34.4 2.6 36 296-335 10-45 (66)
80 3vk6_A E3 ubiquitin-protein li 84.9 0.62 2.1E-05 36.2 3.1 33 300-335 3-35 (101)
81 2yt5_A Metal-response element- 81.1 0.59 2E-05 33.1 1.5 36 296-332 4-41 (66)
82 1wil_A KIAA1045 protein; ring 78.9 1.2 4E-05 33.6 2.5 35 295-331 12-46 (89)
83 3vta_A Cucumisin; subtilisin-l 76.9 1.6 5.4E-05 44.6 3.7 60 146-216 280-339 (621)
84 2jun_A Midline-1; B-BOX, TRIM, 75.8 1.8 6.2E-05 32.9 3.0 33 298-331 3-35 (101)
85 2ysm_A Myeloid/lymphoid or mix 74.6 1.4 4.8E-05 34.4 2.1 39 295-334 4-42 (111)
86 1f62_A Transcription factor WS 74.5 1.4 4.8E-05 29.4 1.8 31 300-331 2-32 (51)
87 2l5u_A Chromodomain-helicase-D 73.8 2.1 7.3E-05 29.9 2.7 35 295-333 8-42 (61)
88 2e6r_A Jumonji/ARID domain-con 69.4 1.8 6.1E-05 33.0 1.5 36 295-331 13-48 (92)
89 2yql_A PHD finger protein 21A; 68.6 1.8 6.1E-05 29.6 1.3 35 295-333 6-40 (56)
90 1mm2_A MI2-beta; PHD, zinc fin 66.5 1.6 5.4E-05 30.6 0.6 34 295-332 6-39 (61)
91 2puy_A PHD finger protein 21A; 64.6 3.2 0.00011 28.7 2.0 33 297-333 4-36 (60)
92 1we9_A PHD finger family prote 63.7 5.2 0.00018 27.8 2.9 33 297-330 5-38 (64)
93 4f54_A Uncharacterized protein 63.6 2.4 8.1E-05 37.0 1.3 8 12-19 105-113 (197)
94 1fp0_A KAP-1 corepressor; PHD 63.3 4 0.00014 30.9 2.4 35 295-333 22-56 (88)
95 1xwh_A Autoimmune regulator; P 62.7 3.2 0.00011 29.3 1.7 33 297-333 7-39 (66)
96 2ku3_A Bromodomain-containing 60.4 5.6 0.00019 28.7 2.6 36 295-331 13-50 (71)
97 2k16_A Transcription initiatio 57.3 5.3 0.00018 28.7 2.1 36 295-331 15-50 (75)
98 3v43_A Histone acetyltransfera 57.1 5.9 0.0002 31.0 2.5 33 298-331 5-43 (112)
99 2l43_A N-teminal domain from h 55.9 5.2 0.00018 30.1 1.9 35 296-331 23-59 (88)
100 2vpb_A Hpygo1, pygopus homolog 55.7 6.8 0.00023 27.7 2.4 34 296-330 6-41 (65)
101 3ql9_A Transcriptional regulat 54.7 10 0.00034 30.7 3.5 33 295-331 54-86 (129)
102 1wev_A Riken cDNA 1110020M19; 52.9 5.3 0.00018 30.0 1.5 35 298-333 16-52 (88)
103 2kwj_A Zinc finger protein DPF 50.7 6.3 0.00022 30.9 1.7 33 299-332 2-41 (114)
104 2lbm_A Transcriptional regulat 47.9 14 0.00047 30.4 3.4 35 295-333 60-94 (142)
105 2e6s_A E3 ubiquitin-protein li 45.6 6.9 0.00024 28.6 1.1 32 299-331 27-58 (77)
106 3v43_A Histone acetyltransfera 44.6 8.6 0.00029 30.0 1.6 35 298-333 61-96 (112)
107 3asl_A E3 ubiquitin-protein li 40.3 7.7 0.00026 27.8 0.6 31 300-331 20-50 (70)
108 2kwj_A Zinc finger protein DPF 40.2 9.4 0.00032 29.9 1.2 32 299-331 59-90 (114)
109 4gne_A Histone-lysine N-methyl 39.6 17 0.00057 28.4 2.5 32 295-330 12-45 (107)
110 2xb1_A Pygopus homolog 2, B-ce 38.7 18 0.0006 28.0 2.5 32 298-330 3-36 (105)
111 2ysm_A Myeloid/lymphoid or mix 36.6 13 0.00045 28.7 1.5 32 299-331 55-86 (111)
112 2dj7_A Actin-binding LIM prote 34.2 33 0.0011 24.6 3.3 30 297-329 14-43 (80)
113 2co8_A NEDD9 interacting prote 30.4 25 0.00086 25.3 2.1 29 298-329 15-43 (82)
114 1wem_A Death associated transc 28.7 52 0.0018 23.4 3.5 30 299-330 17-46 (76)
115 1zfo_A LAsp-1; LIM domain, zin 28.6 14 0.00048 21.9 0.3 29 298-329 3-31 (31)
116 1iko_P Ephrin-B2; greek KEY, g 27.3 19 0.00065 30.7 1.0 10 3-12 105-114 (178)
117 2cu8_A Cysteine-rich protein 2 26.4 38 0.0013 23.7 2.4 29 298-329 9-37 (76)
118 3ask_A E3 ubiquitin-protein li 25.8 26 0.00091 31.0 1.7 32 299-331 175-206 (226)
119 3shb_A E3 ubiquitin-protein li 25.0 15 0.0005 26.9 -0.1 33 300-333 28-60 (77)
120 1iml_A CRIP, cysteine rich int 23.6 26 0.00088 24.6 1.0 14 298-311 27-40 (76)
121 2b3g_B Cellular tumor antigen 23.4 26 0.00089 20.1 0.8 12 325-336 14-25 (28)
122 2lv9_A Histone-lysine N-methyl 22.7 52 0.0018 24.9 2.7 31 299-331 29-59 (98)
123 1wep_A PHF8; structural genomi 22.4 79 0.0027 22.6 3.5 31 298-330 12-43 (79)
124 2wul_A Glutaredoxin related pr 21.5 30 0.001 27.2 1.1 60 148-207 20-86 (118)
125 3gx8_A Monothiol glutaredoxin- 20.8 48 0.0017 25.7 2.2 59 148-206 16-83 (121)
126 1a7i_A QCRP2 (LIM1); LIM domai 20.6 44 0.0015 23.6 1.8 29 298-329 7-35 (81)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=185.29 Aligned_cols=135 Identities=22% Similarity=0.337 Sum_probs=110.3
Q ss_pred CceeeeecccCCCCCCCCCCCeEEEEEeCC---CCCCCCCCCCCCCCC----CCCCCeEEEEEccC-CChHHHHHHHHHc
Q 019783 99 PLSLHFPDLPAKFAVDVNSSGTCGALHVAD---PADACSPLSNPVASN----DADHINFVLIVRGQ-CIFEDKIRNAQAA 170 (336)
Q Consensus 99 ~~~~~f~~~~a~Fg~~~~~~~~~g~L~~~~---p~~aC~~~~~~~~~~----~~~~~~IvLV~RG~-CsF~~Kv~~Aq~a 170 (336)
+.+.++.+.+++||...+..++.|.|+.+. |.+||++.+.+..+. ....++||||+||+ |+|.+|+++||++
T Consensus 49 n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~a 128 (194)
T 3icu_A 49 NRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYER 128 (194)
T ss_dssp TCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHT
T ss_pred cceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHC
Confidence 345568899999999999999999998864 789999987642211 11348999999999 9999999999999
Q ss_pred CCcEEEEeccC-CCCceeecccCCCcceeeEEEEeeecccchhcccc-CCcceeeecCCCCCCccc
Q 019783 171 GYRAAIVYNDR-EKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR-GETGECCIFPESNRGSWS 234 (336)
Q Consensus 171 GA~avII~n~~-~~~~l~~m~~~~~~i~IP~v~I~~~~G~~L~~~l~-g~~v~v~I~p~~~~~~w~ 234 (336)
||+||||||+. ++..+..|..+. ...||++||++++|+.|++.++ |.+|++.|....++.+|.
T Consensus 129 GA~avIIyNn~~~g~~~~~m~~~~-~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~pw~ 193 (194)
T 3icu_A 129 GASGAVIFNFPGTRNEVIPMSHPG-AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWV 193 (194)
T ss_dssp TCSEEEEECCTTCTTCCCCCCCTT-CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECCCC
T ss_pred CCcEEEEEeCCCCCCceeeecCCC-CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCCCC
Confidence 99999999985 334556676443 4689999999999999999987 889999987777777774
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=104.94 Aligned_cols=64 Identities=22% Similarity=0.415 Sum_probs=56.0
Q ss_pred cCCCCHHHHhcCCeeeeccCCCCCCCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhcC
Q 019783 271 SRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 271 ~~~l~~~~i~~lp~~~y~~~~~~~~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
.++++++.+++||.+.+...... .....+|+||+++|.+++.+++|||+|.| |..||+.||.++
T Consensus 14 ~~~~s~~~i~~lp~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~ 77 (91)
T 2l0b_A 14 NPPASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKS 77 (91)
T ss_dssp CCCCCHHHHHTSCEEECCTTCSS-SSSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTT
T ss_pred CCCCCHHHHHhCCCeeecccccc-cCCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcC
Confidence 67899999999999999874432 34578999999999999999999999999 999999999753
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3.3e-13 Score=101.19 Aligned_cols=56 Identities=25% Similarity=0.570 Sum_probs=48.0
Q ss_pred HHhcCCeeeeccCCCCCCCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhcC
Q 019783 278 VVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 278 ~i~~lp~~~y~~~~~~~~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
.+++||..+|+... ...+..+|+||+++|.+++.++.|||+|.| |..||+.||.++
T Consensus 5 ~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~ 60 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKAN 60 (75)
T ss_dssp CCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHC
T ss_pred hHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcC
Confidence 46789999997632 344578999999999999999999999999 999999999754
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.08 E-value=6.5e-11 Score=82.96 Aligned_cols=39 Identities=33% Similarity=0.696 Sum_probs=35.9
Q ss_pred CCccccccccccCCCCeeEEec-CCceeCChhhHHHhhhcC
Q 019783 297 GGETCAICLEDYQDGEKLKVLS-CKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~Lp-C~H~F~H~~CId~WL~~~ 336 (336)
++.+|+||+++|.+++.++.+| |+|.| |.+||++|+.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~ 43 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSH 43 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcC
Confidence 4678999999999999999998 99999 999999999753
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=8.3e-11 Score=86.37 Aligned_cols=42 Identities=29% Similarity=0.590 Sum_probs=37.5
Q ss_pred CCCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhcC
Q 019783 294 QCHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 294 ~~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
......+|+||+++|.+++.++.|||+|.| |..||..|+.++
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~ 51 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITN 51 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcC
Confidence 345577999999999999999999999999 999999999753
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=86.63 Aligned_cols=41 Identities=34% Similarity=0.675 Sum_probs=37.0
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhcC
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
.....+|+||+++|.+++.+++|||+|.| |.+||+.||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~ 52 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVR 52 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcC
Confidence 34577999999999999999999999999 999999999753
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=1.8e-10 Score=86.65 Aligned_cols=41 Identities=34% Similarity=0.650 Sum_probs=37.1
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhcC
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
.....+|+||+++|.+++.+++|||+|.| |..||..|+.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~ 52 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQH 52 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTT
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcC
Confidence 44577999999999999999999999999 999999999753
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.5e-10 Score=86.94 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCccccccccccC-----------CCCeeEEec-CCceeCChhhHHHhhhcC
Q 019783 297 GGETCAICLEDYQ-----------DGEKLKVLS-CKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 297 ~~~~CaICLe~f~-----------~gd~vr~Lp-C~H~F~H~~CId~WL~~~ 336 (336)
++++|+||+++|. .++.++++| |+|.| |.+||++||.++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQN 64 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhC
Confidence 3556777777775 467788887 99999 999999999864
No 9
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.5e-10 Score=86.21 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=34.2
Q ss_pred CCCCccccccccccCCCCeeEEecCC-----ceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCK-----HATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~-----H~F~H~~CId~WL~~ 335 (336)
..++.+|+|||++|.+++.+ ++||+ |.| |.+||++||.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~f-H~~Cl~~Wl~~ 55 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFV-HQACLQQWIKS 55 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCE-ETTHHHHHHHH
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCee-CHHHHHHHHhh
Confidence 44578999999999988887 69997 999 99999999975
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.91 E-value=7.3e-10 Score=77.41 Aligned_cols=39 Identities=33% Similarity=0.602 Sum_probs=34.0
Q ss_pred CCccccccccccCCC-CeeEEecCCceeCChhhHHHhhhcC
Q 019783 297 GGETCAICLEDYQDG-EKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 297 ~~~~CaICLe~f~~g-d~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
+..+|+||+++|.++ +.++.+||+|.| |.+||+.|+.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~ 43 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEG 43 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHT
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcC
Confidence 567899999999776 468889999999 999999999753
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.87 E-value=4e-10 Score=90.40 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=33.0
Q ss_pred CCccccccccccCCC---------------CeeEEecCCceeCChhhHHHhhhcC
Q 019783 297 GGETCAICLEDYQDG---------------EKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 297 ~~~~CaICLe~f~~g---------------d~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
.+++|+||+++|.+. ..++.++|+|.| |..||++||.++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~ 89 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTR 89 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcC
Confidence 467899999999864 147788999999 999999999753
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.82 E-value=1.8e-09 Score=86.97 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=31.7
Q ss_pred CCccccccccccCCCC---------------eeEEecCCceeCChhhHHHhhh
Q 019783 297 GGETCAICLEDYQDGE---------------KLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd---------------~vr~LpC~H~F~H~~CId~WL~ 334 (336)
.+++|+|||++|.+++ .++.+||+|.| |.+||+.||.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~ 75 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYC 75 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHH
Confidence 3568999999997754 56688999999 9999999994
No 13
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.80 E-value=1e-08 Score=101.56 Aligned_cols=115 Identities=8% Similarity=-0.041 Sum_probs=78.2
Q ss_pred ecccCCCCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEccCCC---------hHHH----HHHHHHcC
Q 019783 105 PDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCI---------FEDK----IRNAQAAG 171 (336)
Q Consensus 105 ~~~~a~Fg~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~IvLV~RG~Cs---------F~~K----v~~Aq~aG 171 (336)
...+..+++..+..+++|.|+.......|..... ....||||||+||.|. |..| +.+|+++|
T Consensus 91 ~~~~l~~s~~tp~~~vta~lV~v~~~~~~~~~~~-----~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aG 165 (444)
T 3iib_A 91 VVTALGGSIATPAQGLSATIVRFDTLQDLQNAEA-----GSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKG 165 (444)
T ss_dssp CEEECBTCCCCCTTCEEEEEEEESSHHHHHTSCT-----TTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeccCCCCCCCCCeEEEEEecCCHHHHhhccc-----cccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCC
Confidence 3333444555556789999988765555544321 1245999999999995 6666 45799999
Q ss_pred CcEEEEeccCCCCc---eee-cccCCCcceeeEEEEeeecccchhcccc-CCcceeee
Q 019783 172 YRAAIVYNDREKGS---LVS-MTASHEGVKVHAIFVSLETGVYLKEHAR-GETGECCI 224 (336)
Q Consensus 172 A~avII~n~~~~~~---l~~-m~~~~~~i~IP~v~I~~~~G~~L~~~l~-g~~v~v~I 224 (336)
|+|+||+|+.+... ... |...+....||++.|+.++|+.|++.++ |..+++.+
T Consensus 166 A~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l 223 (444)
T 3iib_A 166 AVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISL 223 (444)
T ss_dssp CSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEE
T ss_pred CeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999764221 111 2222235689999999999999988876 54454444
No 14
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.80 E-value=1.5e-08 Score=99.55 Aligned_cols=91 Identities=25% Similarity=0.352 Sum_probs=66.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEccCCChHHHHHHHHHcCCcEEEEeccCCCCceeecccCCCcce
Q 019783 118 SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVK 197 (336)
Q Consensus 118 ~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~l~~m~~~~~~i~ 197 (336)
.+++|.|++..-. ..+.++. ....||||||+||+|+|.+|+++|+++||+|||||++.+ +....+.++.....
T Consensus 91 g~v~a~lv~~~~G-~~~D~~~-----~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~-~~~~g~~~~~~~~~ 163 (421)
T 2ek8_A 91 SDVTAELVYVGLG-TTADVAG-----KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTD-GKLNGTLGGSDASF 163 (421)
T ss_dssp EEEEEEEEECTTC-CTTTTTT-----SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSS-SCCCCBCSSCCTTC
T ss_pred CCcceEEEECCCC-ChhhcCC-----CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCC-cccccccCCCCCCC
Confidence 3577888765422 1111111 124599999999999999999999999999999999864 33333333334578
Q ss_pred eeEEEEeeecccchhccc
Q 019783 198 VHAIFVSLETGVYLKEHA 215 (336)
Q Consensus 198 IP~v~I~~~~G~~L~~~l 215 (336)
||++.|+.++++.|++.+
T Consensus 164 IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 164 VAAVGITKQEGDALAANL 181 (421)
T ss_dssp CEEEEECHHHHHHHHHHH
T ss_pred ccEEEeCHHHHHHHHHHh
Confidence 999999999999988776
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=4.9e-09 Score=76.34 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=34.1
Q ss_pred CCCCccccccccccCCC----CeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDG----EKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~g----d~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+..+|+||+++|.+. +.+..++|+|.| |.+||+.||.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~ 55 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN 55 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHH
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHc
Confidence 44578899999999863 566889999999 99999999975
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.68 E-value=6e-09 Score=76.48 Aligned_cols=39 Identities=26% Similarity=0.627 Sum_probs=33.9
Q ss_pred CCCccccccccccCC----CCeeEEecCCceeCChhhHHHhhhc
Q 019783 296 HGGETCAICLEDYQD----GEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 296 ~~~~~CaICLe~f~~----gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
.+..+|+||+++|.+ ++.+..++|+|.| |.+||+.|+.+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~ 50 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN 50 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHH
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHc
Confidence 356789999999976 4677889999999 99999999975
No 17
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.64 E-value=3.7e-09 Score=86.16 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=1.1
Q ss_pred CCccccccccccCC-------------CCe--eEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQD-------------GEK--LKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~-------------gd~--vr~LpC~H~F~H~~CId~WL~~ 335 (336)
.+++|+||+++|.+ +|. +..++|+|.| |..||++||..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~ 99 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKT 99 (117)
T ss_dssp CC----------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHc
Confidence 46799999999986 333 3335799999 99999999975
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.61 E-value=8.5e-09 Score=73.93 Aligned_cols=38 Identities=24% Similarity=0.571 Sum_probs=33.0
Q ss_pred CCccccccccccCC----CCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQD----GEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~----gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
+..+|+||+++|.+ ++.+..++|+|.| |.+||+.|+.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~ 43 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN 43 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHH
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHc
Confidence 45789999999986 3567889999999 99999999975
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3e-08 Score=75.72 Aligned_cols=40 Identities=25% Similarity=0.510 Sum_probs=35.1
Q ss_pred CCCCccccccccccCCCCe-eEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEK-LKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~-vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+..+|+||++.|.+++. .+.|||+|.| |..||..|+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~ 52 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLAS 52 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHH
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHc
Confidence 4456789999999999875 7889999999 99999999975
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.6e-08 Score=72.97 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=31.4
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+..+|+||++.|.+ .++||+|.| |..||+.|+.+
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~f-c~~Ci~~~~~~ 47 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSF-CQKCIDKWSDR 47 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEE-CHHHHHHSSCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcc-cHHHHHHHHHC
Confidence 3456789999999987 779999999 99999999874
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.57 E-value=3.3e-08 Score=71.97 Aligned_cols=36 Identities=36% Similarity=0.551 Sum_probs=31.2
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
...+|+||++++.+ .+..+||+|.| |..||..|+.+
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~f-c~~Ci~~~~~~ 39 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAF-CYVCITRWIRQ 39 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEE-STTHHHHHHHH
T ss_pred CCCCCeeCCccccC--CcEecCCCCee-HHHHHHHHHhC
Confidence 46789999999864 45789999999 99999999975
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.9e-08 Score=72.46 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=31.6
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhcC
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
..+..+|+||++.|.+ ...+||+|.| |..||+.|+.++
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~CgH~f-C~~Ci~~~~~~~ 49 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLPCKHVF-CYLCVKGASWLG 49 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEETTTEEE-EHHHHHHCTTCS
T ss_pred CCCCCCCccCCcccCC---CEEccCCCHH-HHHHHHHHHHCC
Confidence 3456789999999865 3567999999 999999999753
No 23
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=66.71 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++.|.+. .+|||+|.| |.+||..|+.+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~f-C~~Ci~~~~~~ 48 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNF-CKACITRWWED 48 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCC-CHHHHHHHTTS
T ss_pred cccCCCCccCCcccCcc---EeCCCCCcc-CHHHHHHHHHh
Confidence 34567999999999875 348999999 99999999653
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3e-07 Score=65.86 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+..+|+||++.|.+ -.+|||+|.| |..||..|+.+
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~CgH~f-C~~Ci~~~~~~ 53 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCGHNF-CLKCITQIGET 53 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTSSEE-CHHHHHHHHHH
T ss_pred CccCCCCCcCCchhCC---eEEeCCCCcc-hHHHHHHHHHc
Confidence 3456799999999975 3457999999 99999999973
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.2e-07 Score=68.50 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=31.2
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++.|.+ .+..++|+|.| |..||+.|+.+
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~CgH~f-C~~Ci~~~~~~ 49 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITECLHTF-CKSCIVRHFYY 49 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSSSCCEE-CHHHHHHHHHH
T ss_pred cCCCCCCCCCChHHHC--cCEECCCCCHH-HHHHHHHHHHc
Confidence 3456789999999976 44445999999 99999999964
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.32 E-value=1.4e-07 Score=77.11 Aligned_cols=40 Identities=25% Similarity=0.609 Sum_probs=34.2
Q ss_pred CCCccccccccccCC----CCeeEEecCCceeCChhhHHHhhhcC
Q 019783 296 HGGETCAICLEDYQD----GEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 296 ~~~~~CaICLe~f~~----gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
.+..+|+||+++|.+ ++.+..++|+|.| |.+||+.||.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~ 48 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNA 48 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhC
Confidence 356789999999976 3677889999999 999999999753
No 27
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.31 E-value=6.1e-07 Score=93.57 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCC--CCCCCCCeEEEEEccCCChHHHHHHHHHcCCcEEEEeccCCC------------
Q 019783 118 SGTCGALHVADPADACSPLSNPVA--SNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREK------------ 183 (336)
Q Consensus 118 ~~~~g~L~~~~p~~aC~~~~~~~~--~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~------------ 183 (336)
..++|.|+++. .||...-.... .+....||||||+||+|+|.+|+++|+++||+|||||++..+
T Consensus 125 G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~ 202 (707)
T 3fed_A 125 GMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKG 202 (707)
T ss_dssp BCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTS
T ss_pred CceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCC
Confidence 45788888774 45521100000 012245999999999999999999999999999999996310
Q ss_pred ----------Cceeec--ccCC--------------------CcceeeEEEEeeecccchhccccC
Q 019783 184 ----------GSLVSM--TASH--------------------EGVKVHAIFVSLETGVYLKEHARG 217 (336)
Q Consensus 184 ----------~~l~~m--~~~~--------------------~~i~IP~v~I~~~~G~~L~~~l~g 217 (336)
+.+..+ .+|+ ....||++-|+..+|+.|.+.++|
T Consensus 203 ~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 203 WNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp SBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred ccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 001000 0121 125899999999999999887754
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=5.6e-07 Score=67.80 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=30.6
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
......|+||++.|.+ . .++||+|.| |..||..|+.+
T Consensus 12 ~~~~~~C~IC~~~~~~--p-~~~~CgH~f-C~~Ci~~~~~~ 48 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN--P-VVTKCRHYF-CESCALEHFRA 48 (81)
T ss_dssp CCCCSBCSSSCSBCCS--E-EECTTSCEE-EHHHHHHHHHH
T ss_pred CCCCCCCcCCCchhcC--e-eEccCCCHh-HHHHHHHHHHC
Confidence 3446789999999965 3 358999999 99999999964
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=3.3e-07 Score=68.55 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..++|+||.+.+..+++.. .|+|.| |..||++||..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C~h~f-H~~Ci~kWl~~ 49 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TCGIRM-HLPCVAKYFQS 49 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SSCCEE-CHHHHHHHSTT
T ss_pred CCCcCcchhhHcccCCccC--CCCchh-hHHHHHHHHHh
Confidence 4679999999999887654 899999 99999999975
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.24 E-value=7e-07 Score=66.27 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=30.8
Q ss_pred CCCCccccccccccCCCCeeEEec-CCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLS-CKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~Lp-C~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++.|.+ . .+|| |+|.| |..||+.|+.+
T Consensus 12 ~~~~~~C~IC~~~~~~--p-~~~~~CgH~f-C~~Ci~~~~~~ 49 (74)
T 2yur_A 12 IPDELLCLICKDIMTD--A-VVIPCCGNSY-CDECIRTALLE 49 (74)
T ss_dssp SCGGGSCSSSCCCCTT--C-EECSSSCCEE-CTTHHHHHHHH
T ss_pred CCCCCCCcCCChHHhC--C-eEcCCCCCHH-HHHHHHHHHHh
Confidence 3456799999999975 2 3489 99999 99999999974
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=9.8e-07 Score=64.83 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhh
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~ 334 (336)
..+...|+||++.|.+ ..++||+|.| |..||..|+.
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~f-C~~Ci~~~~~ 52 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNF-CLKCITQIGE 52 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEE-EHHHHHHHCS
T ss_pred CccCCEeccCCcccCC---eEEcCCCChh-hHHHHHHHHH
Confidence 3456799999999974 4457999999 9999999996
No 32
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.19 E-value=1e-06 Score=90.99 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=63.2
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEccCCChHHHHHHHHHcCCcEEEEeccCCCCce-------ee---
Q 019783 119 GTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSL-------VS--- 188 (336)
Q Consensus 119 ~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~l-------~~--- 188 (336)
.++|.|+.+. .||...-.... -...||||||+||+|+|.+|+++|+++||+|||||++..+... ..
T Consensus 107 ~v~g~lV~vg--~G~~~D~~~l~--vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~ 182 (640)
T 3kas_A 107 TVTGKLVHAN--FGTKKDFEDLY--TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAH 182 (640)
T ss_dssp EEEECEEECT--TCCHHHHHTCS--SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECC
T ss_pred ceEEEEEEec--CCChhhHHHhh--cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccc
Confidence 4677777764 34421000000 1245999999999999999999999999999999997532110 00
Q ss_pred c-ccC-------------------CCcceeeEEEEeeecccchhcccc
Q 019783 189 M-TAS-------------------HEGVKVHAIFVSLETGVYLKEHAR 216 (336)
Q Consensus 189 m-~~~-------------------~~~i~IP~v~I~~~~G~~L~~~l~ 216 (336)
+ .+| .....||++-|+.++++.|.+.+.
T Consensus 183 ~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 183 LGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0 011 012479999999999999877654
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.19 E-value=5.3e-07 Score=65.04 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=30.7
Q ss_pred Ccccccccc-ccCCCCee-EEecCCceeCChhhHHHhhhc
Q 019783 298 GETCAICLE-DYQDGEKL-KVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 298 ~~~CaICLe-~f~~gd~v-r~LpC~H~F~H~~CId~WL~~ 335 (336)
+.+|+||++ .|.+.... ..++|+|.| |.+||+.|+.+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~ 41 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVR 41 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHT
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHc
Confidence 568999999 77776543 557899999 99999999864
No 34
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.2e-06 Score=63.37 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCCeeEEecCCceeCChhhHHHhhh
Q 019783 296 HGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~ 334 (336)
.+...|+||++.|.+.-. ++|+|.| |..||..|+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~f-C~~Ci~~~~~ 47 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TECGHRF-CESCMAALLS 47 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CSSSCCC-CHHHHHHHHT
T ss_pred CcCCCCCCCChHhcCeeE---CCCCCHH-HHHHHHHHHH
Confidence 456789999999976433 7999999 9999999994
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.15 E-value=6.6e-07 Score=73.00 Aligned_cols=38 Identities=26% Similarity=0.645 Sum_probs=32.8
Q ss_pred CCccccccccccCC----CCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQD----GEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~----gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
+...|+||+++|.+ ++....++|+|.| |..||++||.+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~ 112 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN 112 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHH
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHc
Confidence 46789999999986 3556788999999 99999999975
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.09 E-value=2e-06 Score=64.66 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++.|.+. .++||+|.| |..||..|+.+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~f-C~~Ci~~~~~~ 52 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSF-CRACITLNYES 52 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCB-CHHHHHHHHHH
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHH-HHHHHHHHHHh
Confidence 34567899999999764 268999999 99999999975
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.07 E-value=1.4e-06 Score=68.60 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
+...|+||++.|.+ .+..++|+|.| |..||..|+.+
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~CgH~F-C~~Ci~~~~~~ 56 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPHCSKLC-CFSCIRRWLTE 56 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTTTCCEE-EHHHHHHHHHH
T ss_pred CCCCCccCCccccC--ccccCCCCChh-hHHHHHHHHHH
Confidence 35689999999964 55558999999 99999999975
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=2.5e-06 Score=64.10 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+..+|+||++.|.+- ..|||+|.| |.+||..|+.+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~f-C~~Ci~~~~~~ 52 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSF-CQACLTANHKK 52 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCB-CTTHHHHHHHH
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHH-HHHHHHHHHHH
Confidence 34567899999999753 347999999 99999999875
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.02 E-value=9.2e-07 Score=65.93 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+..+|+||++.|.+- .+|||+|.| |.+||..|+.+
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~f-C~~Ci~~~~~~ 45 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSL-CRACITVSNKE 45 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCC-CHHHHSCCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHH-HHHHHHHHHHh
Confidence 34567899999999763 347999999 99999999875
No 40
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.00 E-value=2.2e-06 Score=61.34 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=28.3
Q ss_pred CCCccccccccccCCCCeeEEecCC--c---eeCChhhHHHhhhc
Q 019783 296 HGGETCAICLEDYQDGEKLKVLSCK--H---ATCRVSCKLRGLMA 335 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr~LpC~--H---~F~H~~CId~WL~~ 335 (336)
.+..+|.||+++ .++.+ ++||+ | .| |.+||++||..
T Consensus 4 ~~~~~CrIC~~~--~~~~l-~~PC~C~gs~~~~-H~~Cl~~W~~~ 44 (60)
T 1vyx_A 4 EDVPVCWICNEE--LGNER-FRACGCTGELENV-HRSCLSTWLTI 44 (60)
T ss_dssp CSCCEETTTTEE--CSCCC-CCSCCCSSGGGSC-CHHHHHHHHHH
T ss_pred CCCCEeEEeecC--CCCce-ecCcCCCCchhhh-HHHHHHHHHHh
Confidence 356799999998 34445 69965 4 89 99999999963
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.99 E-value=2.6e-06 Score=70.83 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=29.3
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
+..|+||++.|.+ ..+|||+|.| |..||..|+..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~f-c~~Ci~~~~~~ 86 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSF-CSYCINEWMKR 86 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEE-EHHHHHHHTTT
T ss_pred cCCCcccCcccCC---ceECCCCCCc-cHHHHHHHHHc
Confidence 3479999999965 4578999999 99999999875
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.99 E-value=3.5e-06 Score=62.79 Aligned_cols=37 Identities=24% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++.|.+ - .++||+|.| +..||..||.+
T Consensus 5 ~~~~~~C~IC~~~~~~--P-v~~~CgH~f-c~~Ci~~~~~~ 41 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD--P-VIVSTGQTY-ERSSIQKWLDA 41 (78)
T ss_dssp CSSSSSCTTTSCCCSS--E-EEETTTEEE-EHHHHHHHHTT
T ss_pred CcccCCCCCccccccC--C-EEcCCCCee-cHHHHHHHHHH
Confidence 3457799999999965 2 447999999 99999999975
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.98 E-value=2.6e-06 Score=66.63 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=29.3
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
...|+||++.|.+ .+..++|+|.| |..||..|+.+
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~f-C~~Ci~~~~~~ 56 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNY-CSLCIRKFLSY 56 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEE-EHHHHHHHHTT
T ss_pred CCCcccCChhhCC--cCEECCCCCHh-hHHHHHHHHHC
Confidence 5689999999975 44445899999 99999999975
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.95 E-value=3.6e-06 Score=66.88 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=30.5
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
+...|+||++.|.+ .+..++|+|.| |..||..|+.+
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~CgH~f-C~~Ci~~~~~~ 49 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIECLHSF-CKTCIVRYLET 49 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETTTCCEE-EHHHHHHHHTS
T ss_pred CcCCCccCChHHhC--cCEeCCCCChh-hHHHHHHHHHh
Confidence 46789999999964 55556999999 99999999975
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.88 E-value=5.3e-06 Score=70.94 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=30.6
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
....|+||++.|.+ .+..+||+|.| |..||+.||.+
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~f-C~~Ci~~~~~~ 88 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRF-CADCIITALRS 88 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEE-EHHHHHHHHHT
T ss_pred CCCCCcccChHhhC--cCEeCCCCChh-HHHHHHHHHHh
Confidence 34589999999985 56556999999 99999999975
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=61.46 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCCeeEEec-CCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLS-CKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~Lp-C~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++.|.+ -.+|| |+|.| +..||..|+.+
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~f-C~~Ci~~~~~~ 47 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSY-CDECIRTALLE 47 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEE-CHHHHHHHHHH
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHH-HHHHHHHHHHh
Confidence 4456799999999974 24689 99999 99999999864
No 47
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.77 E-value=1.3e-05 Score=82.89 Aligned_cols=83 Identities=10% Similarity=0.036 Sum_probs=64.1
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCC--CCeEEEEEccCCChHHHHHHHHHcCCcEEEEeccCCCCceeecccCCCcceeeEE
Q 019783 124 LHVADPADACSPLSNPVASNDAD--HINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAI 201 (336)
Q Consensus 124 L~~~~p~~aC~~~~~~~~~~~~~--~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~l~~m~~~~~~i~IP~v 201 (336)
|+.+.....|.+...+. ... .+||||++||.|+|.+|..+++++||.++|++|+.. .+ . .....+|++
T Consensus 261 lv~~~~~~~C~~~~l~~---~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~--~~---~--~~~~~~P~~ 330 (649)
T 3i6s_A 261 VIYNKTLSDCSSEELLS---QVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPG--VF---R--SATFPNPGV 330 (649)
T ss_dssp EECCTTTTTCCCHHHHT---TSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGG--GG---G--CCCCCSCEE
T ss_pred eEecccccccccccccc---cccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcc--cc---c--cccCcCCEE
Confidence 44444567888743211 112 599999999999999999999999999999999762 11 1 233589999
Q ss_pred EEeeecccchhcccc
Q 019783 202 FVSLETGVYLKEHAR 216 (336)
Q Consensus 202 ~I~~~~G~~L~~~l~ 216 (336)
+|+.++|+.|+++++
T Consensus 331 ~v~~~~g~~i~~yi~ 345 (649)
T 3i6s_A 331 VVNKKEGKQVINYVK 345 (649)
T ss_dssp EECHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHh
Confidence 999999999999876
No 48
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.77 E-value=8.4e-06 Score=77.40 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCCccccccccccCCCCeeE-----EecCCceeCChhhHHHhhhc
Q 019783 296 HGGETCAICLEDYQDGEKLK-----VLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr-----~LpC~H~F~H~~CId~WL~~ 335 (336)
....+|+||++.+.+++.+- -.+|+|.| |..||.+||..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs 349 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKT 349 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHh
Confidence 45779999999999854432 34699999 99999999963
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.74 E-value=1.2e-05 Score=63.89 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=28.7
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
...|+||++.|.+. .++||+|.| |..||..|+.+
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~f-C~~Ci~~~~~~ 54 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIF-CKFCMLKLLNQ 54 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCC-CSHHHHHHHHS
T ss_pred CCCCcccChhhcCe---EECCCCCHH-HHHHHHHHHHh
Confidence 45899999999653 237999999 99999999974
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.73 E-value=1.3e-05 Score=65.27 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.5
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhh
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~ 334 (336)
...|+||++.|.+ -..+||+|.| |..||..|+.
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~f-C~~Ci~~~~~ 84 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNV-CKDCLDRSFR 84 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEE-EHHHHHHHHH
T ss_pred CCCCCcCChHHcC---cEEeeCCCcc-cHHHHHHHHh
Confidence 5689999999984 3457999999 9999999996
No 51
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.72 E-value=4.4e-05 Score=75.18 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=56.2
Q ss_pred CCCeEEEEEccCC-----ChHHHHHHHHHcCCcEEEEeccCCCCcee--ecccCCCcceeeEEEEeeecccchhcccc
Q 019783 146 DHINFVLIVRGQC-----IFEDKIRNAQAAGYRAAIVYNDREKGSLV--SMTASHEGVKVHAIFVSLETGVYLKEHAR 216 (336)
Q Consensus 146 ~~~~IvLV~RG~C-----sF~~Kv~~Aq~aGA~avII~n~~~~~~l~--~m~~~~~~i~IP~v~I~~~~G~~L~~~l~ 216 (336)
..+||+|++||+| .|.+|+.+|+++||+++|+||+.+..... ..........||+++|+.++|+.|++++.
T Consensus 272 ~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~ 349 (441)
T 1y9z_A 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLG 349 (441)
T ss_dssp CTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTT
T ss_pred ccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhc
Confidence 4599999999987 88999999999999999999986432221 11122345689999999999999998874
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.68 E-value=1.8e-05 Score=63.91 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++.|.+. .+++|+|.| +..||..|+.+
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~f-C~~Ci~~~~~~ 51 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRF-CKACIIKSIRD 51 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEE-EHHHHHHHHHH
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChh-hHHHHHHHHhh
Confidence 34467999999999754 457999999 99999999964
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.67 E-value=7.9e-06 Score=57.29 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.6
Q ss_pred CCCccccccccccCCCCeeEEecCCceeCChhhHHHh
Q 019783 296 HGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRG 332 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~W 332 (336)
.+...|+||++.|.+- ++|||+|.| +..||..|
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~f-C~~Ci~~~ 36 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTL-CSGCLEAS 36 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCS-BTTTCSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcc-cHHHHccC
Confidence 3467899999999863 568999999 99999764
No 54
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.64 E-value=2e-05 Score=60.97 Aligned_cols=37 Identities=19% Similarity=0.465 Sum_probs=32.7
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhh
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~ 334 (336)
+..+|.||+++|...+.++.++|+|.| ..+|+..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~ 40 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVE 40 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHH
Confidence 466899999999888888877899999 9999999876
No 55
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.60 E-value=1.5e-05 Score=63.87 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
++..|+||++.|.+ -.+|||+|.| |..||..|+.+
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~CgH~f-C~~Ci~~~~~~ 48 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLPCNHTL-CKPCFQSTVEK 48 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECTTSCEE-CHHHHCCCCCT
T ss_pred CCCCCccCCcccCc---eeEcCCCCHH-hHHHHHHHHhH
Confidence 35689999999974 3457999999 99999999864
No 56
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.60 E-value=7.8e-05 Score=80.10 Aligned_cols=65 Identities=31% Similarity=0.501 Sum_probs=53.5
Q ss_pred CCCeEEEEEccCCChHHHHHHHHHcCCcEEEEeccCCCCceeecccCCCcceeeEEEEeeecccchhc
Q 019783 146 DHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKE 213 (336)
Q Consensus 146 ~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~l~~m~~~~~~i~IP~v~I~~~~G~~L~~ 213 (336)
..+||||++||.|+|.+|+.+|+++||.++|++|+..+.....+ .....||+++|+.++|+.|+.
T Consensus 279 v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~---~~~~~iP~~~i~~~~g~~l~~ 343 (926)
T 1xf1_A 279 VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLLLKD 343 (926)
T ss_dssp CTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC---CCSTTCCEEEECHHHHHHHHH
T ss_pred cCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc---CccccccEEEEeHHHHHHHHh
Confidence 45999999999999999999999999999999998754333322 224578999999999988874
No 57
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.54 E-value=1.5e-05 Score=64.07 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=28.9
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
...|+||++.|.+ . .+++|+|.| |..||..|+.+
T Consensus 23 ~~~C~IC~~~~~~--p-~~~~CgH~f-C~~Ci~~~~~~ 56 (116)
T 1rmd_A 23 SISCQICEHILAD--P-VETSCKHLF-CRICILRCLKV 56 (116)
T ss_dssp HTBCTTTCSBCSS--E-EECTTSCEE-EHHHHHHHHHH
T ss_pred CCCCCCCCcHhcC--c-EEcCCCCcc-cHHHHHHHHhH
Confidence 5689999999964 3 338999999 99999999974
No 58
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.44 E-value=3.8e-05 Score=64.89 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=28.8
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
...|+||++.|.+ -.++||+|.| +..||..|+.+
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~f-C~~Ci~~~~~~ 111 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNV-CKDCLQRSFKA 111 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEE-EHHHHHHHHHT
T ss_pred CCEeecCChhhcC---CEEcCCCCch-hHHHHHHHHHh
Confidence 4689999999965 2348999999 99999999974
No 59
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.43 E-value=6.8e-05 Score=56.34 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCccccccccccCCCCe-eEEecCCceeCChhhHHHhhh
Q 019783 296 HGGETCAICLEDYQDGEK-LKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~-vr~LpC~H~F~H~~CId~WL~ 334 (336)
.++.+|+||+|.+...|. +..++|+|.| +..|+..++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~ 47 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRT 47 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTT
T ss_pred ccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHh
Confidence 456789999999976553 2224499999 9999998863
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.40 E-value=7.9e-05 Score=72.18 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=29.7
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhh
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~ 334 (336)
...+|+||++.+.+ ...+||+|.| |..||..|+.
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~F-C~~Ci~~wl~ 364 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLM-CTSCLTSWQE 364 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEE-CHHHHHHHHH
T ss_pred CCCCCCccCcCCCC---eEEeCCCChh-hHHHHHHHHh
Confidence 35789999999854 6779999999 9999999987
No 61
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.31 E-value=8.9e-05 Score=61.96 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 296 HGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
.+...|+||++.|.+- .+++|+|.| +..||..|+.+
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~F-C~~Ci~~~~~~ 64 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRY-CSFCLASILSS 64 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEE-EHHHHHHHGGG
T ss_pred CcCcCCCCCChhhcCc---EECCCCCcc-CHHHHHHHHhc
Confidence 4567899999999765 447999999 99999999964
No 62
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.07 E-value=0.00015 Score=58.36 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=27.8
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhh
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~ 334 (336)
...|+||++.|.+ -+...||+|.| +..||..|+.
T Consensus 22 ~~~C~IC~~~~~~--pv~~~~CgH~f-C~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILRE--PVCLGGCEHIF-CSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSS--CBCCCSSSCCB-CTTTGGGGTT
T ss_pred CCCCCCCChHhhC--ccEeCCCCCHH-HHHHHHHHhc
Confidence 5789999999964 33333899999 9999999974
No 63
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.82 E-value=0.00045 Score=50.94 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=26.6
Q ss_pred CccccccccccCCCCeeEEecCCce-eCChhhHHHh
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHA-TCRVSCKLRG 332 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~-F~H~~CId~W 332 (336)
...|.||++.+.+ ...+||+|. | ...|+..|
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~-C~~C~~~~ 55 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVT-CKQCAEAV 55 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCC-CHHHHTTC
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhH-HHHhhhcC
Confidence 5689999998754 566899999 9 99999987
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.00083 Score=51.91 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCCeeEEec-CCceeCChhhHHHhhhc
Q 019783 296 HGGETCAICLEDYQDGEKLKVLS-CKHATCRVSCKLRGLMA 335 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr~Lp-C~H~F~H~~CId~WL~~ 335 (336)
.....|+||++-|.+ -|. +| |+|.| -+.||..||.+
T Consensus 5 ~~~~~CPI~~~~~~d--PV~-~~~cGh~f-~r~cI~~~l~~ 41 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK--PVK-NKVCGHTY-EEDAIVRMIES 41 (94)
T ss_dssp SSCCBCTTTCSBCSS--EEE-ESSSCCEE-EHHHHHHHHHH
T ss_pred CcEeECcCcCchhcC--CEE-cCCCCCee-cHHHHHHHHHH
Confidence 356789999999874 554 65 99999 99999999975
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.59 E-value=0.00074 Score=48.43 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCccccccccccCCCCeeE-EecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLK-VLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr-~LpC~H~F~H~~CId~WL~~ 335 (336)
++.+|.||++++.+. +. .+||+|.+.=.+|++.|..+
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~ 44 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKR 44 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHT
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHc
Confidence 467899999986553 32 34999994046999999864
No 66
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.53 E-value=0.0022 Score=48.58 Aligned_cols=37 Identities=16% Similarity=-0.008 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+.-.|+||++-|++ - .++||+|.| -+.||..||.+
T Consensus 11 ~p~~~~CpI~~~~m~d--P-V~~~cGhtf-~r~~I~~~l~~ 47 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD--P-VRLPSGTVM-DRSIILRHLLN 47 (85)
T ss_dssp CCTTTBCTTTCSBCSS--E-EECTTSCEE-EHHHHHHHHHH
T ss_pred CchheECcccCchhcC--C-eECCCCCEE-CHHHHHHHHhc
Confidence 3457799999999875 3 357899999 99999999974
No 67
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.39 E-value=0.0028 Score=49.62 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=30.5
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..+...|+||++-|.+ -| ++||+|.| -+.||..||.+
T Consensus 26 ~p~~~~CpI~~~~m~d--PV-~~~cGhtf-~r~~I~~~l~~ 62 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD--PV-RLPSGTIM-DRSIILRHLLN 62 (100)
T ss_dssp CSTTTBCTTTCSBCSS--EE-EETTTEEE-EHHHHHHHTTS
T ss_pred CcHhhCCcCccCcccC--Ce-ECCCCCEE-chHHHHHHHHc
Confidence 3457799999998865 33 47899999 99999999974
No 68
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.25 E-value=0.0019 Score=46.11 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=27.4
Q ss_pred CCccccccccccCCCCeeEEecCCce-eCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHA-TCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~-F~H~~CId~WL~~ 335 (336)
...+|.||++.+.+- .+..+||+|. | -.+|+..|..+
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~-C~~C~~~~~~~ 43 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVT-CFHCARRLKKA 43 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEE-CHHHHHHHHHT
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhH-HHHHHHHHHHh
Confidence 467899999976542 1223499998 8 89999998743
No 69
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.21 E-value=0.0042 Score=48.41 Aligned_cols=37 Identities=19% Similarity=0.043 Sum_probs=30.5
Q ss_pred CCCCccccccccccCCCCeeEEecCC-ceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCK-HATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~-H~F~H~~CId~WL~~ 335 (336)
..+...|+||++-|++ -| ++||+ |.| -+.||..||.+
T Consensus 19 ~p~~~~CpI~~~~m~d--PV-~~~cG~htf-~r~cI~~~l~~ 56 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD--PV-VLPSSRVTV-DRSTIARHLLS 56 (98)
T ss_dssp CCTTTBCTTTCSBCSS--EE-ECTTTCCEE-EHHHHHHHTTT
T ss_pred CcHhcCCcCccccccC--Ce-ECCCCCeEE-CHHHHHHHHHh
Confidence 3456799999998865 34 48999 999 99999999975
No 70
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.0043 Score=44.98 Aligned_cols=31 Identities=19% Similarity=0.572 Sum_probs=25.6
Q ss_pred CCCccccccccccCCCCeeEEecCCce-eCChhhHH
Q 019783 296 HGGETCAICLEDYQDGEKLKVLSCKHA-TCRVSCKL 330 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr~LpC~H~-F~H~~CId 330 (336)
.+...|.||++.+.+ +..|||+|. | -..|+.
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~-C~~C~~ 44 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCL-CDGCVK 44 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCS-CTTHHH
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhh-hHHHHh
Confidence 346789999998654 778999999 9 888986
No 71
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.0023 Score=47.14 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=24.9
Q ss_pred CccccccccccCCCCeeEEecCCce-eCChhhHHH
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHA-TCRVSCKLR 331 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~-F~H~~CId~ 331 (336)
..+|.||++.+.+ ...+||+|. | ...|+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~-C~~C~~~ 55 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVT-CKQCAEA 55 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCB-CHHHHHH
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHH-HHHHhhC
Confidence 5689999998755 556899999 9 9999864
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.33 E-value=0.012 Score=53.27 Aligned_cols=37 Identities=8% Similarity=-0.136 Sum_probs=30.6
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
....-.|+||++-|.+ -| ++||+|.| -+.||..||.+
T Consensus 205 ~~~~~~c~i~~~~~~d--Pv-~~~~gh~f-~~~~i~~~~~~ 241 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE--PC-ITPSGITY-DRKDIEEHLQR 241 (281)
T ss_dssp CCSTTBCTTTCSBCSS--EE-ECSSCCEE-ETTHHHHHHHH
T ss_pred CCcccCCcCcCCHhcC--Ce-ECCCCCEE-CHHHHHHHHHH
Confidence 4457799999998864 44 58899999 89999999975
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.18 E-value=0.0083 Score=42.57 Aligned_cols=36 Identities=11% Similarity=-0.064 Sum_probs=28.9
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHHhhhcC
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMAD 336 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~~ 336 (336)
...|+||++-+.+ -|...+|+|.| =++||.+||.+|
T Consensus 3 ~~~CpIs~~~m~d--PV~~~~sG~~y-er~~I~~~l~~~ 38 (61)
T 2bay_A 3 HMLCAISGKVPRR--PVLSPKSRTIF-EKSLLEQYVKDT 38 (61)
T ss_dssp -CCCTTTCSCCSS--EEEETTTTEEE-EHHHHHHHHHHH
T ss_pred eEEecCCCCCCCC--CEEeCCCCcEE-cHHHHHHHHHhC
Confidence 4579999999984 44433799999 999999999753
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.66 E-value=0.015 Score=55.48 Aligned_cols=32 Identities=19% Similarity=0.507 Sum_probs=27.0
Q ss_pred CCccccccccccCCCCeeEEecCCce-eCChhhHHHh
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHA-TCRVSCKLRG 332 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~-F~H~~CId~W 332 (336)
+...|+||++.+.+ ...|||+|. | ...|+..|
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~f-C~~C~~~~ 326 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVV-CQECAPSL 326 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEE-CTTTGGGC
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhH-hHHHHhcC
Confidence 35689999999864 566899999 9 99999887
No 75
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.48 E-value=0.016 Score=43.09 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=25.2
Q ss_pred CccccccccccCCCCeeEEecCCce-eCChhhHHHh
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHA-TCRVSCKLRG 332 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~-F~H~~CId~W 332 (336)
...|.||++.+.+ ...+||+|. | =..|+..|
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~-C~~C~~~~ 49 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVC-CESCAAQL 49 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCB-CHHHHTTC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHH-HHHHHHhc
Confidence 4689999998754 677899999 8 77888765
No 76
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.24 E-value=0.024 Score=49.07 Aligned_cols=37 Identities=8% Similarity=-0.136 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
.+..-.|+||++-|.+ -| ++||+|.| =+.||..||.+
T Consensus 103 ip~~f~CPI~~elm~D--PV-~~~~Ghtf-er~~I~~~l~~ 139 (179)
T 2f42_A 103 IPDYLCGKISFELMRE--PC-ITPSGITY-DRKDIEEHLQR 139 (179)
T ss_dssp CCGGGBCTTTCSBCSS--EE-ECTTSCEE-EHHHHHHHHHH
T ss_pred CcHhhcccCccccCCC--Ce-ECCCCCEE-CHHHHHHHHHh
Confidence 4567899999999874 44 46999999 99999999975
No 77
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.029 Score=51.39 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
..-.|+||++-| .|-|+.+.|+|.| =+.||..|+.+
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsF-cR~cI~~~~~~ 215 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVF-DRDGIQNYLQG 215 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEE-EHHHHHHHSTT
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcc-cHHHHHHHHHh
Confidence 456899999998 5678877999999 89999999865
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.07 E-value=0.058 Score=48.71 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=29.7
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
....|+||-+--..|.++.. |+|.| |..|++.|+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~--C~~~~-H~~C~~~~~~~ 214 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCET--CGIRM-HLPCVAKYFQS 214 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSS--SCCEE-CHHHHHHHTTT
T ss_pred CCCcCcchhhHHhCCcccCc--cChHH-HHHHHHHHHHh
Confidence 36789999999888755432 99999 99999999854
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.62 E-value=0.4 Score=34.38 Aligned_cols=36 Identities=19% Similarity=0.484 Sum_probs=26.0
Q ss_pred CCCccccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 296 HGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
.....|.||-+ .|+.|.-=.|...| |..|+++.|.+
T Consensus 10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~-H~~Cl~P~l~~ 45 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLRCTHCAAAF-HWRCHFPAGTS 45 (66)
T ss_dssp CTTCCCTTTSC---CTTCEECSSSCCEE-CHHHHCTTTCC
T ss_pred CCCCCcCCCCC---CCeEEECCCCCCce-ecccCCCccCc
Confidence 34567999964 35554444488999 99999987754
No 80
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=84.92 E-value=0.62 Score=36.22 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=25.7
Q ss_pred cccccccccCCCCeeEEecCCceeCChhhHHHhhhc
Q 019783 300 TCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLMA 335 (336)
Q Consensus 300 ~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~~ 335 (336)
.|.+| ++--....|.+||+|+| =-+|+..|..+
T Consensus 3 fC~~C--~~Pi~iygRmIPCkHvF-CydCa~~~~~~ 35 (101)
T 3vk6_A 3 FCDKC--GLPIKVYGRMIPCKHVF-CYDCAILHEKK 35 (101)
T ss_dssp BCTTT--CSBCSEEEEEETTCCEE-EHHHHHHHHHT
T ss_pred ecCcc--CCCeEEEeeeccccccH-HHHHHHHHHhc
Confidence 57777 44445688999999999 78999888643
No 81
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.10 E-value=0.59 Score=33.06 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=25.8
Q ss_pred CCCccccccccccCC--CCeeEEecCCceeCChhhHHHh
Q 019783 296 HGGETCAICLEDYQD--GEKLKVLSCKHATCRVSCKLRG 332 (336)
Q Consensus 296 ~~~~~CaICLe~f~~--gd~vr~LpC~H~F~H~~CId~W 332 (336)
..+..|.||.+.+.+ ++.|.---|.-.| |..|+++=
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~-H~~C~~p~ 41 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGY-HQLCHTPH 41 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEE-ETTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHH-HhhhCCCc
Confidence 356789999987543 3444434488999 99998763
No 82
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=78.87 E-value=1.2 Score=33.56 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
...++.|.||- .|..++...-=-|.-+| |..|+.+
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCRvC~Rvf-H~~CL~r 46 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCRVCTRVF-HDGCLRR 46 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCSSSSSCC-CHHHHHH
T ss_pred CCCCcccCccc-cccccceeccccccccc-cHhhccc
Confidence 44688999993 34444543222267999 9999986
No 83
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=76.85 E-value=1.6 Score=44.55 Aligned_cols=60 Identities=5% Similarity=-0.082 Sum_probs=46.3
Q ss_pred CCCeEEEEEccCCChHHHHHHHHHcCCcEEEEeccCCCCceeecccCCCcceeeEEEEeeecccchhcccc
Q 019783 146 DHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR 216 (336)
Q Consensus 146 ~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~l~~m~~~~~~i~IP~v~I~~~~G~~L~~~l~ 216 (336)
..++|+|.+| .+..|..+++.+||.++|++++.... .....+|++.++.++|..++.++.
T Consensus 280 v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~--------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 280 LKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY--------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp TTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS--------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred ccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc--------ccccccceEEECHHHHHHHHHHHh
Confidence 3489999864 56788999999999999999976421 123468999999999988876643
No 84
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=75.85 E-value=1.8 Score=32.85 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=27.2
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
+-.|.||+++|...-...-++|.|.| =..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 46799999987666666669999999 6889986
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.60 E-value=1.4 Score=34.42 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhhh
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGLM 334 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL~ 334 (336)
...++.|+||-+.=+.++.|.--.|...| |..|++..+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~-H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHY-HGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEE-CTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCc-ChHHhCCccc
Confidence 34678999998763333345545588999 9999987653
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.53 E-value=1.4 Score=29.39 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=23.0
Q ss_pred cccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 300 TCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 300 ~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
.|.||-+.-.+++.|.---|...| |..|+++
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~-H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAF-HLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEE-CHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhh-CcccCCC
Confidence 488998765445555545588999 9999975
No 87
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.81 E-value=2.1 Score=29.86 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=25.7
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhh
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL 333 (336)
...+..|.||-+ .|+.|.---|...| |..|+++=|
T Consensus 8 ~~~~~~C~vC~~---~g~ll~CD~C~~~f-H~~Cl~p~l 42 (61)
T 2l5u_A 8 TDHQDYCEVCQQ---GGEIILCDTCPRAY-HMVCLDPDM 42 (61)
T ss_dssp SCCCSSCTTTSC---CSSEEECSSSSCEE-EHHHHCTTC
T ss_pred CCCCCCCccCCC---CCcEEECCCCChhh-hhhccCCCC
Confidence 445678999986 35555544588999 999998743
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.42 E-value=1.8 Score=32.96 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
..+...|.||-+.-.+++.|.-=-|...| |..|+++
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~-H~~Cl~P 48 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNY-HIFCLLP 48 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEE-CSSSSSS
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchh-ccccCCC
Confidence 34466899998875444444434488999 9999974
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.62 E-value=1.8 Score=29.61 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhh
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL 333 (336)
...+..|.||-+. |+.|.---|...| |..|+++=|
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~-H~~Cl~ppl 40 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVY-HLDCLDPPL 40 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEE-CSSSSSSCC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcce-ECccCCCCc
Confidence 3356789999873 5555544588999 999998543
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=66.46 E-value=1.6 Score=30.55 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHh
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRG 332 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~W 332 (336)
...+..|.||-+ .|+.|.-=-|...| |..|+++=
T Consensus 6 d~~~~~C~vC~~---~g~ll~Cd~C~~~f-H~~Cl~pp 39 (61)
T 1mm2_A 6 DHHMEFCRVCKD---GGELLCCDTCPSSY-HIHCLNPP 39 (61)
T ss_dssp CSSCSSCTTTCC---CSSCBCCSSSCCCB-CSSSSSSC
T ss_pred cCCCCcCCCCCC---CCCEEEcCCCCHHH-cccccCCC
Confidence 345678999975 35554444478999 99999853
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=64.63 E-value=3.2 Score=28.68 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=24.4
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhh
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL 333 (336)
.+..|.||-+. |+.|.-=-|...| |..|+++=|
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~f-H~~Cl~ppl 36 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVY-HLDCLDPPL 36 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEE-CGGGSSSCC
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCE-ECCcCCCCc
Confidence 46789999863 5655544588999 999998533
No 92
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.69 E-value=5.2 Score=27.84 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=25.6
Q ss_pred CCccccccccccCCC-CeeEEecCCceeCChhhHH
Q 019783 297 GGETCAICLEDYQDG-EKLKVLSCKHATCRVSCKL 330 (336)
Q Consensus 297 ~~~~CaICLe~f~~g-d~vr~LpC~H~F~H~~CId 330 (336)
+...|.||-..|.++ ..|.--.|..=| |..|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~Wf-H~~Cvg 38 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWF-HGKCVK 38 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEE-ETTTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCC-CccccC
Confidence 456799999998754 455555689999 999985
No 93
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=63.55 E-value=2.4 Score=36.98 Aligned_cols=8 Identities=50% Similarity=1.493 Sum_probs=3.7
Q ss_pred ccccc-ccc
Q 019783 12 GWGWG-WGW 19 (336)
Q Consensus 12 ~~~~~-~~~ 19 (336)
+|||| |||
T Consensus 105 ~~~~~Y~G~ 113 (197)
T 4f54_A 105 EWWWGYPGY 113 (197)
T ss_dssp SGGGGSTTS
T ss_pred ccccccCcc
Confidence 45444 443
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.32 E-value=4 Score=30.89 Aligned_cols=35 Identities=20% Similarity=0.573 Sum_probs=24.8
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhh
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL 333 (336)
...+..|.+|-+. |+.|.--.|.-.| |..|+++=|
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~f-H~~Cl~PpL 56 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCF-HLDCHLPAL 56 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEE-CTTSSSTTC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCce-ecccCCCCC
Confidence 3456789999863 5554444477899 999997644
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.74 E-value=3.2 Score=29.33 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=24.3
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhHHHhh
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL 333 (336)
.+..|.||-+. |+.|.-=-|...| |..|+++=|
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~f-H~~Cl~ppl 39 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAF-HLACLSPPL 39 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEE-CTTTSSSCC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhh-cccccCCCc
Confidence 56789999863 5555544488999 999998533
No 96
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=60.35 E-value=5.6 Score=28.70 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=24.7
Q ss_pred CCCCcccccccccc-CCCCeeEEec-CCceeCChhhHHH
Q 019783 295 CHGGETCAICLEDY-QDGEKLKVLS-CKHATCRVSCKLR 331 (336)
Q Consensus 295 ~~~~~~CaICLe~f-~~gd~vr~Lp-C~H~F~H~~CId~ 331 (336)
......|.||.+.- .+++.+..-. |.-.| |..|+.+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~-H~~Cl~~ 50 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAV-HQECYGV 50 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEE-EHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCcc-ccccCCC
Confidence 34578899998764 2333443333 88999 9999974
No 97
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=57.32 E-value=5.3 Score=28.75 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=25.0
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
......|.||-.....++.|.-=-|.--| |..|+..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wf-H~~Cv~~ 50 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWY-HWPCVGI 50 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEE-EHHHHTC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCccc-ccccCCC
Confidence 33456799998876433344444488999 9999964
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.13 E-value=5.9 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=24.1
Q ss_pred Ccccccccccc------CCCCeeEEecCCceeCChhhHHH
Q 019783 298 GETCAICLEDY------QDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 298 ~~~CaICLe~f------~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
...|.+|+.+= ..++.|.---|...| |..|++.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~-H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSG-HPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEE-CHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCC-CCchhcC
Confidence 57899999863 233455555589999 9999964
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=55.86 E-value=5.2 Score=30.06 Aligned_cols=35 Identities=20% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCCcccccccccc-CCCCeeEEec-CCceeCChhhHHH
Q 019783 296 HGGETCAICLEDY-QDGEKLKVLS-CKHATCRVSCKLR 331 (336)
Q Consensus 296 ~~~~~CaICLe~f-~~gd~vr~Lp-C~H~F~H~~CId~ 331 (336)
..+..|.||-+.- .+++.+..-. |.-.| |..|+.+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~f-H~~Cl~p 59 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAV-HQECYGV 59 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCC-CHHHHTC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchh-hcccCCC
Confidence 3567899998754 2223333333 88899 9999974
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=55.73 E-value=6.8 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=24.9
Q ss_pred CCCccccccccccCCCC-eeEEe-cCCceeCChhhHH
Q 019783 296 HGGETCAICLEDYQDGE-KLKVL-SCKHATCRVSCKL 330 (336)
Q Consensus 296 ~~~~~CaICLe~f~~gd-~vr~L-pC~H~F~H~~CId 330 (336)
.....|.+|...|.+++ .|.-- .|+-=| |..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~Wf-H~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWF-HRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEE-EHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccC-chhccC
Confidence 34678999999998775 44444 689899 999984
No 101
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=54.66 E-value=10 Score=30.74 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
...++.|.||-+. ||.+--=.|-..| |.+||++
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~F-c~~Cl~~ 86 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAF-CKKCILR 86 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEE-EHHHHHH
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhh-hHHHhCC
Confidence 3456789999752 3433222378999 9999986
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.88 E-value=5.3 Score=29.98 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=24.2
Q ss_pred CccccccccccCCC-CeeEEec-CCceeCChhhHHHhh
Q 019783 298 GETCAICLEDYQDG-EKLKVLS-CKHATCRVSCKLRGL 333 (336)
Q Consensus 298 ~~~CaICLe~f~~g-d~vr~Lp-C~H~F~H~~CId~WL 333 (336)
...|.||.+.-.+. +.+..-. |...| |..|+++=|
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~y-H~~Cl~Ppl 52 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLY-HQDCHKPQV 52 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEE-ETTTSSSCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeE-cCccCCCcc
Confidence 56899999864432 3333333 88999 999998644
No 103
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=50.73 E-value=6.3 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=23.6
Q ss_pred ccccccccccC----C---CCeeEEecCCceeCChhhHHHh
Q 019783 299 ETCAICLEDYQ----D---GEKLKVLSCKHATCRVSCKLRG 332 (336)
Q Consensus 299 ~~CaICLe~f~----~---gd~vr~LpC~H~F~H~~CId~W 332 (336)
+.|.||+..=. . ++.|.--.|...| |..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~-H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSG-HPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEE-CTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCcc-chhhCCCh
Confidence 56999998642 1 2445545588999 99999865
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=47.89 E-value=14 Score=30.42 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=25.0
Q ss_pred CCCCccccccccccCCCCeeEEecCCceeCChhhHHHhh
Q 019783 295 CHGGETCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL 333 (336)
...++.|.||-+ .||.+--=.|-..| |.+||++=|
T Consensus 60 Dg~~d~C~vC~~---GG~LlcCD~Cpr~F-h~~Cl~p~l 94 (142)
T 2lbm_A 60 DGMDEQCRWCAE---GGNLICCDFCHNAF-CKKCILRNL 94 (142)
T ss_dssp TSCBCSCSSSCC---CSSEEECSSSCCEE-EHHHHHHHT
T ss_pred CCCCCeecccCC---CCcEEeCCCCCCee-eHhhcCCCC
Confidence 345789999965 35554433488999 999999644
No 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.57 E-value=6.9 Score=28.65 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=22.5
Q ss_pred ccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 299 ETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 299 ~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
..|.||-..=..++.|.-=.|...| |..|+++
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~y-H~~Cl~P 58 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAY-HIYCLNP 58 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEE-ETTSSSS
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccc-cccccCC
Confidence 3799998753344444433488999 9999984
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=44.63 E-value=8.6 Score=29.99 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=23.2
Q ss_pred CccccccccccCC-CCeeEEecCCceeCChhhHHHhh
Q 019783 298 GETCAICLEDYQD-GEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 298 ~~~CaICLe~f~~-gd~vr~LpC~H~F~H~~CId~WL 333 (336)
-..|.||-+.=.+ ++.+.---|...| |..|+++=|
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~y-H~~Cl~p~l 96 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGF-HMECCDPPL 96 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEE-CGGGCSSCC
T ss_pred CCccccccCcCCCccceEEcCCCCCee-ecccCCCCC
Confidence 4479999875333 3333333388999 999998644
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=40.26 E-value=7.7 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=20.2
Q ss_pred cccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 300 TCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 300 ~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
.|.||-..=..++.|.-=-|...| |..|+++
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~y-H~~Cl~P 50 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAF-HIYCLDP 50 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEE-EGGGSSS
T ss_pred CCcCCCCcCCCCCEEEcCCCCCce-ecccCCC
Confidence 677887653333333322378999 9999984
No 108
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.24 E-value=9.4 Score=29.88 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=23.7
Q ss_pred ccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 299 ETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 299 ~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
..|.||-+.-.+++.|.--.|...| |..|+++
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~y-H~~Cl~p 90 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGY-HMYCLNP 90 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEE-ETTTSSS
T ss_pred CccCcccccCCCCceEEcCCCCccc-cccccCC
Confidence 3688998765555555545589999 9999984
No 109
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.56 E-value=17 Score=28.40 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCCCccccccccccCCCCeeEEe--cCCceeCChhhHH
Q 019783 295 CHGGETCAICLEDYQDGEKLKVL--SCKHATCRVSCKL 330 (336)
Q Consensus 295 ~~~~~~CaICLe~f~~gd~vr~L--pC~H~F~H~~CId 330 (336)
...++.|.+|-+ .|+.|.-= .|...| |..|++
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~Cp~~f-H~~Cl~ 45 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKDCPKAY-HLLCLN 45 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTTCCCEE-CTGGGT
T ss_pred CCCCCCCCcCCC---CCcEeEECCCCCCccc-ccccCc
Confidence 345678999973 35544433 377899 999997
No 110
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=38.68 E-value=18 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=24.0
Q ss_pred CccccccccccCCCCe-eEEe-cCCceeCChhhHH
Q 019783 298 GETCAICLEDYQDGEK-LKVL-SCKHATCRVSCKL 330 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~-vr~L-pC~H~F~H~~CId 330 (336)
...|.||...|.+++. +.-= .|.-=| |.+|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~Wf-H~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWF-HRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEE-EGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCccccc-ccccCC
Confidence 3579999999977644 3333 488889 999985
No 111
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=36.60 E-value=13 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=21.7
Q ss_pred ccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 299 ETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 299 ~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
..|.||-+.-.+...+.--.|...| |..|+++
T Consensus 55 ~~C~~C~~~~~~~~ll~Cd~C~~~y-H~~Cl~p 86 (111)
T 2ysm_A 55 KVCQNCKQSGEDSKMLVCDTCDKGY-HTFCLQP 86 (111)
T ss_dssp CCCTTTCCCSCCTTEEECSSSCCEE-EGGGSSS
T ss_pred CcccccCccCCCCCeeECCCCCcHH-hHHhcCC
Confidence 3688887654333344444488999 9999985
No 112
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.17 E-value=33 Score=24.60 Aligned_cols=30 Identities=37% Similarity=0.638 Sum_probs=20.7
Q ss_pred CCccccccccccCCCCeeEEecCCceeCChhhH
Q 019783 297 GGETCAICLEDYQDGEKLKVLSCKHATCRVSCK 329 (336)
Q Consensus 297 ~~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CI 329 (336)
....|+-|-+...+++.|..+ +..| |.+|+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~--~~~w-H~~CF 43 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLAL--DKQW-HVSCF 43 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEET--TEEE-CTTTC
T ss_pred CCCCCcCcCCeeCCCeEEEEC--Cccc-ccccC
Confidence 355688888777777766554 5677 77775
No 113
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.43 E-value=25 Score=25.28 Aligned_cols=29 Identities=38% Similarity=0.521 Sum_probs=15.4
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhH
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCK 329 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CI 329 (336)
...|+-|-+...++|.|.. =+..| |.+|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~a--~~~~w-H~~CF 43 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV--NGHFF-HRSCF 43 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB--TTBCC-BTTTC
T ss_pred CCCCcccCCCcccceEEEE--CCCee-CCCcC
Confidence 4556666665555555432 24555 65553
No 114
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.66 E-value=52 Score=23.41 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=23.4
Q ss_pred ccccccccccCCCCeeEEecCCceeCChhhHH
Q 019783 299 ETCAICLEDYQDGEKLKVLSCKHATCRVSCKL 330 (336)
Q Consensus 299 ~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId 330 (336)
..| ||-..+..+..|.--.|..=| |..|+.
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~Wf-H~~Cvg 46 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWF-HGDCVG 46 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEE-EHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcE-eCeEEc
Confidence 456 899888766677666689999 999985
No 115
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=28.59 E-value=14 Score=21.88 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=21.9
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhH
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCK 329 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CI 329 (336)
.+.|+.|-......|++.. =+..| |..|.
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~--~g~~~-Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNC--LDKFW-HKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCS--SSSCC-CGGGC
T ss_pred CCcCCccCCEEecceeEEE--CCeEe-cccCC
Confidence 3579999888777776553 36899 99984
No 116
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=27.27 E-value=19 Score=30.71 Aligned_cols=10 Identities=70% Similarity=1.065 Sum_probs=8.7
Q ss_pred ceEEEecCCc
Q 019783 3 PYYYISTSRG 12 (336)
Q Consensus 3 ~~~~~~~~~~ 12 (336)
.|||||||.|
T Consensus 105 ~YY~IstS~G 114 (178)
T 1iko_P 105 DYYIISTSNG 114 (178)
T ss_dssp EEEEECCCCB
T ss_pred ceEEEecCCc
Confidence 5999999976
No 117
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.43 E-value=38 Score=23.67 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=15.9
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhH
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCK 329 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CI 329 (336)
...|+.|-+....++.|.. -+..| |.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a--~~~~~-H~~CF 37 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS--LGKDW-HKFCL 37 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE--TTEEE-ETTTC
T ss_pred CCCCcCCCCEeECCeEEEE--CCeEe-eCCCC
Confidence 3456666666655555443 24556 66553
No 118
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=25.83 E-value=26 Score=30.97 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=19.5
Q ss_pred ccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 299 ETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 299 ~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
..|.+|-..=..++.|.-=-|...| |..|+++
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~y-H~~CL~P 206 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAF-HIYCLDP 206 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEE-CSCC--C
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcce-eCccCCC
Confidence 3799998753334444333488999 9999985
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=25.01 E-value=15 Score=26.91 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=20.6
Q ss_pred cccccccccCCCCeeEEecCCceeCChhhHHHhh
Q 019783 300 TCAICLEDYQDGEKLKVLSCKHATCRVSCKLRGL 333 (336)
Q Consensus 300 ~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~WL 333 (336)
.|.||-..=.+++.|.-=-|...| |..|+++=|
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~y-H~~Cl~PpL 60 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAF-HIYCLDPPL 60 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEE-ETTTSSSCC
T ss_pred cCCccCCCCCCcceeEeCCCCCcc-CcccCCCcc
Confidence 577776653333333222378999 999998643
No 120
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.55 E-value=26 Score=24.62 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=7.5
Q ss_pred CccccccccccCCC
Q 019783 298 GETCAICLEDYQDG 311 (336)
Q Consensus 298 ~~~CaICLe~f~~g 311 (336)
--.|..|-..+..+
T Consensus 27 CF~C~~C~~~L~~~ 40 (76)
T 1iml_A 27 CLKCEKCGKTLTSG 40 (76)
T ss_dssp TCBCTTTCCBCCTT
T ss_pred CCCccccCccCCCC
Confidence 34566665555444
No 121
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=23.43 E-value=26 Score=20.06 Aligned_cols=12 Identities=8% Similarity=-0.164 Sum_probs=7.3
Q ss_pred ChhhHHHhhhcC
Q 019783 325 RVSCKLRGLMAD 336 (336)
Q Consensus 325 H~~CId~WL~~~ 336 (336)
..+=|++||.+|
T Consensus 14 spddi~qw~s~d 25 (28)
T 2b3g_B 14 SPDDIEQWFTED 25 (28)
T ss_dssp CHHHHHHHHHC-
T ss_pred ChHHHHHHhhcC
Confidence 345577887765
No 122
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.69 E-value=52 Score=24.86 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=23.9
Q ss_pred ccccccccccCCCCeeEEecCCceeCChhhHHH
Q 019783 299 ETCAICLEDYQDGEKLKVLSCKHATCRVSCKLR 331 (336)
Q Consensus 299 ~~CaICLe~f~~gd~vr~LpC~H~F~H~~CId~ 331 (336)
..| ||-....+|..|.-=.|.--| |..|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~-H~~C~~~ 59 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQ-HIDCMGI 59 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEE-ETTTTTC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcC-cCcCCCC
Confidence 357 898877777766655589999 9999864
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.40 E-value=79 Score=22.64 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=23.0
Q ss_pred CccccccccccC-CCCeeEEecCCceeCChhhHH
Q 019783 298 GETCAICLEDYQ-DGEKLKVLSCKHATCRVSCKL 330 (336)
Q Consensus 298 ~~~CaICLe~f~-~gd~vr~LpC~H~F~H~~CId 330 (336)
...| ||-..+. +++.|.---|..=| |..|+.
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~Wf-H~~Cvg 43 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWF-HGSCVG 43 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEE-EHHHHT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcE-EeeecC
Confidence 3456 9999886 44566655688999 999985
No 124
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=21.48 E-value=30 Score=27.23 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=35.4
Q ss_pred CeEEEEEccC-----CChHHHHHHHHH-cCCcEEEEeccCCCCceee-cccCCCcceeeEEEEeeec
Q 019783 148 INFVLIVRGQ-----CIFEDKIRNAQA-AGYRAAIVYNDREKGSLVS-MTASHEGVKVHAIFVSLET 207 (336)
Q Consensus 148 ~~IvLV~RG~-----CsF~~Kv~~Aq~-aGA~avII~n~~~~~~l~~-m~~~~~~i~IP~v~I~~~~ 207 (336)
++|||...|. |.|..|++..-+ .|..-...+|..++.+... |..-...-++|-+||..+-
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~ 86 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEF 86 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEE
Confidence 7899999884 999999998664 6764112223222122211 1111123489999998754
No 125
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.80 E-value=48 Score=25.72 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=35.7
Q ss_pred CeEEEEEcc-----CCChHHHHHHHHH-cCCcE--EEEeccCCCCceee-cccCCCcceeeEEEEeee
Q 019783 148 INFVLIVRG-----QCIFEDKIRNAQA-AGYRA--AIVYNDREKGSLVS-MTASHEGVKVHAIFVSLE 206 (336)
Q Consensus 148 ~~IvLV~RG-----~CsF~~Kv~~Aq~-aGA~a--vII~n~~~~~~l~~-m~~~~~~i~IP~v~I~~~ 206 (336)
++|+|..++ .|.|-.+++..-+ .|... ...+|-..+..... +..-....++|.+||...
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~ 83 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKE 83 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 679999998 8999999998665 57651 33344322111111 111112357899999865
No 126
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.57 E-value=44 Score=23.62 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=18.0
Q ss_pred CccccccccccCCCCeeEEecCCceeCChhhH
Q 019783 298 GETCAICLEDYQDGEKLKVLSCKHATCRVSCK 329 (336)
Q Consensus 298 ~~~CaICLe~f~~gd~vr~LpC~H~F~H~~CI 329 (336)
...|+.|-+...+++.++. -+..| |.+|.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a--~~~~~-H~~CF 35 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC--DGRSF-HRCCF 35 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE--TTEEE-ESSSE
T ss_pred CCcCcCcCccccCceeEEe--CCccc-ccccC
Confidence 4567777777766665543 35667 76664
Done!