BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019784
         (336 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WX0|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
           P21
 pdb|2WX0|G Chain G, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
           P21
 pdb|2WX1|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked
           Tri-Ubiquitin, P212121
          Length = 31

 Score = 34.7 bits (78), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 259 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 288
           D G  W C  CT LN P  + CE C   R+
Sbjct: 1   DEGAQWNCTACTFLNHPALIRCEQCEMPRH 30


>pdb|2WWZ|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
           P212121
          Length = 32

 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 259 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 288
           D G  W C  CT LN P  + CE C   R+
Sbjct: 2   DEGAQWNCTACTFLNHPALIRCEQCEMPRH 31


>pdb|3A9J|C Chain C, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
           Lys63-Linked Di-Ubiquitin
          Length = 34

 Score = 31.6 bits (70), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 259 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 288
            +G  W C  CT LN P  + CE C   R+
Sbjct: 4   HMGAQWNCTACTFLNHPALIRCEQCEMPRH 33


>pdb|2EBQ|A Chain A, Solution Structure Of The Second Zf-Ranbp Domain From
           Human Nuclear Pore Complex Protein Nup153
          Length = 47

 Score = 29.3 bits (64), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQR 287
           W C+ C + N+P A+ C AC T +
Sbjct: 12  WDCDTCLVQNKPEAIKCVACETPK 35


>pdb|2GQE|A Chain A, Molecular Characterization Of The Ran Binding Zinc Finger
           Domain
          Length = 32

 Score = 28.9 bits (63), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQR 287
           W C+ C + N+P A+ C AC T +
Sbjct: 8   WDCDTCLVQNKPEAIKCVACETPK 31


>pdb|1NJ3|A Chain A, Structure And Ubiquitin Interactions Of The Conserved Nzf
           Domain Of Npl4
 pdb|1Q5W|A Chain A, Ubiquitin Recognition By Npl4 Zinc-Fingers
          Length = 31

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 263 MWQCNMCTLLNQPLALTCEACGTQRN 288
           MW C  CT +NQP    CE C   R 
Sbjct: 6   MWACQHCTFMNQPGTGHCEMCSLPRT 31


>pdb|3B08|B Chain B, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
           Linear Di- Ubiquitin
 pdb|3B08|E Chain E, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
           Linear Di- Ubiquitin
 pdb|3B08|H Chain H, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
           Linear Di- Ubiquitin
 pdb|3B08|K Chain K, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
           Linear Di- Ubiquitin
 pdb|3B0A|B Chain B, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
           Linear Di- Ubiquitin
 pdb|3B0A|E Chain E, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
           Linear Di- Ubiquitin
          Length = 64

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSV 291
           WQC  CT +N+P    CE C   R ++ 
Sbjct: 9   WQCPGCTFINKPTRPGCEMCCRARPETY 36


>pdb|3A9K|C Chain C, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
           Lys63-Linked Di-Ubiquitin
          Length = 34

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 260 VGQMWQCNMCTLLNQPLALTCEACGTQR 287
           +G  W C+ CT LN P    CE C   R
Sbjct: 5   MGAPWNCDSCTFLNHPALNRCEQCEMPR 32


>pdb|3CH5|B Chain B, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
          Length = 52

 Score = 28.5 bits (62), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQR 287
           W C+ C + N+P A+ C AC T +
Sbjct: 23  WDCDTCLVQNKPEAVKCVACETPK 46


>pdb|2K0C|A Chain A, Zinc-Finger 2 Of Nup153
          Length = 53

 Score = 28.5 bits (62), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQR 287
           W C+ C + N+P A+ C AC T +
Sbjct: 23  WDCDTCLVQNKPEAVKCVACETPK 46


>pdb|2CRC|A Chain A, Solution Structure Of The Zf-Ranbp Domain Of The Protein
           Hbv Associated Factor
          Length = 52

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKS 290
           WQC  CT +N+P    CE C   R ++
Sbjct: 11  WQCPGCTFINKPTRPGCEMCCRARPEA 37


>pdb|2WCZ|A Chain A, 1.6a Resolution Structure Of Archaeoglobus Fulgidus Hjc, A
           Holliday Junction Resolvase From An Archaeal
           Hyperthermophile
 pdb|2WCZ|B Chain B, 1.6a Resolution Structure Of Archaeoglobus Fulgidus Hjc, A
           Holliday Junction Resolvase From An Archaeal
           Hyperthermophile
 pdb|2WIW|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WIW|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WIZ|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WIZ|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WJ0|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WJ0|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
          Length = 139

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 58  LLGINIGGGAEVKLRLRRPNREWDFFPYEQILDT 91
           L+    G GAE  + L+ P ++W FFP + +  T
Sbjct: 73  LVTFARGFGAEAYVALKLPRKKWRFFPVQMLERT 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,967,625
Number of Sequences: 62578
Number of extensions: 380906
Number of successful extensions: 678
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 40
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)