BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019784
(336 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1
Length = 269
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 9 VWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
+ +V L+ K ++DA +++++A +V +M+++ +KV L EF P + LLG+N+ G+
Sbjct: 29 IQKVAVLQSKPNKEDALNLIKEIAHKVSYLMKENHFKVTNLVEFYPRDQRLLGMNVNHGS 88
Query: 68 EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
++ LRLR E+ F P E I+ TMLHEL HN +GPH+ FY DE+ + +G+
Sbjct: 89 KIMLRLRCSTDEFQFLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWVIEQRGL 148
Query: 128 TGTGKGFDLPGRRLGGFS-----RQPPLSQLRQSALAAAENR-ARHGALLPSGPNRIGGD 181
T G G+RLGG + R P + + + + G+L P G
Sbjct: 149 YDTFLG---NGQRLGGRANLRSNRYPMTGISTNTGIVRKRGKGVKLGSLHPEGI------ 199
Query: 182 SSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDA 229
SSI SP + AA AAERR DD WCG N D + +++ SS +
Sbjct: 200 SSIDRGNSPRELAAFAAERRYRDDRWCGETKNNKDQIISDNISSSLEV 247
>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1442.07c PE=4 SV=1
Length = 282
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 26/175 (14%)
Query: 11 EVKALKKIGEDDARQILEKVAKQ--VQPIMRKHKWKVRILSEFCPA-----NPSLLGINI 63
E+ L +D A + LE++ ++ IM H+W V +LSE PA + LG+N
Sbjct: 113 ELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNH 172
Query: 64 GGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELM 123
GA ++LRLR +R F Y+ + T++HEL HN +G H++ F++L+ ++ KE D
Sbjct: 173 NQGAHIELRLR-TDRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEAD--- 228
Query: 124 AKGITGTGKGFDLPGRRLGGFSRQPPL---------SQLRQSALAAAENRARHGA 169
A + G PG + + P + R LAAAE R + G+
Sbjct: 229 AADLLGK------PGSYVSDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGS 277
>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1
Length = 283
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 8 KVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
K+ + A+K D + L+++A PIM++H + V L E N G N G
Sbjct: 34 KIGFISAIKGDFHDLSSDYLKRIAAMAFPIMKEHGFGVTSLDE-VAYNAKFWGRNWNKGE 92
Query: 68 EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
++L LR + W P+E ++D LHELCH GPH+ F+ +R L AKG
Sbjct: 93 CIELVLRDASNRW--LPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALIALYAKGY 150
Query: 128 TGTGK 132
G GK
Sbjct: 151 KGPGK 155
>sp|P27398|CAND_DROME Calpain-D OS=Drosophila melanogaster GN=sol PE=1 SV=2
Length = 1594
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKG--------WSCKFCTLDNSSLSERCLA 315
W C CTL+N A+ C CG + KS+ +++ W+C CTL NS S C A
Sbjct: 708 WTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTCSHCTLKNSLHSPVCSA 767
Query: 316 CGEWR 320
C R
Sbjct: 768 CKSHR 772
>sp|Q9UGI0|ZRAN1_HUMAN Ubiquitin thioesterase ZRANB1 OS=Homo sapiens GN=ZRANB1 PE=1 SV=2
Length = 708
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 32/96 (33%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQ--------------------------------RNKSV 291
W C+MCT LN P A+ C C +Q RNK
Sbjct: 88 WSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKLN 147
Query: 292 GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPI 327
+ W+C CT +N + ++RC+ C R +N I
Sbjct: 148 TRTQHWTCSVCTYENWAKAKRCVVCDHPRPNNIEAI 183
>sp|B1H2Q2|ZRAN1_XENTR Ubiquitin thioesterase zranb1 OS=Xenopus tropicalis GN=zranb1 PE=2
SV=1
Length = 701
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 32/92 (34%)
Query: 257 AVDVGQMWQCNMCTLLNQPLALTCEACGTQR----------------------------- 287
+++ W C+MCT LN P A+ C C +QR
Sbjct: 76 SMETSTKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSSLRAIPSPIDPCEEY 135
Query: 288 -NKSVGNLKG--WSCKFCTLDNSSLSERCLAC 316
+++ N+KG W+C CT +N + +++C+ C
Sbjct: 136 NDRNKLNIKGQHWTCSACTYENCAKAKKCVVC 167
>sp|Q5U595|ZRN1A_XENLA Ubiquitin thioesterase zranb1-A OS=Xenopus laevis GN=zranb1-a PE=2
SV=1
Length = 701
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 49/138 (35%)
Query: 214 NSDIDV---REDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCT 270
NS DV D+GS +SS + R + S++PSS W C +CT
Sbjct: 44 NSTPDVGSMERDIGSPLICPDSS-----ARPRVKSSYSMEPSSK---------WSCQICT 89
Query: 271 LLNQPLALTCEACGTQR------------------------------NKSVGNLKG--WS 298
LN P A+ C C +QR +++ N+KG W+
Sbjct: 90 YLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGLRSIPSPIDPCEEYNDRNKLNIKGQHWT 149
Query: 299 CKFCTLDNSSLSERCLAC 316
C CT +N + +++C+ C
Sbjct: 150 CSACTYENCAKAKKCVVC 167
>sp|A6QP16|ZRAN1_BOVIN Ubiquitin thioesterase ZRANB1 OS=Bos taurus GN=ZRANB1 PE=2 SV=1
Length = 708
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 32/96 (33%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQ--------------------------------RNKSV 291
W C+MCT LN P A+ C C +Q RNK
Sbjct: 88 WSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKLN 147
Query: 292 GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPI 327
+ W+C CT +N + +++C+ C R +N I
Sbjct: 148 TRTQHWTCSICTYENWAKAKKCVVCDHPRPNNIEAI 183
>sp|Q96EP0|RNF31_HUMAN E3 ubiquitin-protein ligase RNF31 OS=Homo sapiens GN=RNF31 PE=1
SV=1
Length = 1072
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 264 WQCNMCTLLNQPLALTCEAC-----------GTQRNKSVGNLKG------WSCKFCTLDN 306
W C C +LN+P A+ C AC GT+ + G L+ W+C+ CT +N
Sbjct: 304 WHCAACAMLNEPWAVLCVACDRPRGCKGLGLGTEGPQGTGGLEPDLARGRWACQSCTFEN 363
Query: 307 SSLSERCLACGEWRYSNGPPI 327
+ + C C R + P +
Sbjct: 364 EAAAVLCSICERPRLAQPPSL 384
>sp|Q7M760|ZRAN1_MOUSE Ubiquitin thioesterase Zranb1 OS=Mus musculus GN=Zranb1 PE=2 SV=1
Length = 708
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 32/96 (33%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQ--------------------------------RNKSV 291
W C+MCT LN P A+ C C +Q RNK
Sbjct: 88 WSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKLN 147
Query: 292 GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPI 327
+ W+C CT +N + +++C+ C R +N I
Sbjct: 148 TRTQHWTCSVCTYENWAKAKKCVVCDHPRPNNIEAI 183
>sp|Q6NUB7|ZRN1B_XENLA Ubiquitin thioesterase zranb1-B OS=Xenopus laevis GN=zranb1-b PE=2
SV=1
Length = 701
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 46/130 (35%)
Query: 219 VREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLAL 278
+ ++GS +SS V ++ S +TSS W C +CT LN P A+
Sbjct: 52 MEREIGSPLICPDSSARPRVKSSYSMETSS--------------KWSCQICTYLNWPRAI 97
Query: 279 TCEACGTQR------------------------------NKSVGNLKG--WSCKFCTLDN 306
C C +QR +++ N+KG W+C CT +N
Sbjct: 98 RCTQCLSQRRTRSPTESPQSSGSGLRSIPGPIDPCEEYNDRNKLNIKGQHWTCSACTYEN 157
Query: 307 SSLSERCLAC 316
+ +++C+ C
Sbjct: 158 CAKAKKCVVC 167
>sp|Q924T7|RNF31_MOUSE E3 ubiquitin-protein ligase RNF31 OS=Mus musculus GN=Rnf31 PE=1
SV=2
Length = 1066
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKG---------------WSCKFCTLDNSS 308
W C C LN+P A+ C C + V ++G W+C+ CT +N +
Sbjct: 300 WHCLTCATLNEPWAVFCAVCSQPKGCKVPGIEGSHGTGGLEPEPARDQWACQSCTFENEA 359
Query: 309 LSERCLACGEWRYSNGPPI 327
+ C C R + P +
Sbjct: 360 AAVLCAICERPRLAQPPSL 378
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLAC 316
W+C++C + N+ A C AC + K W C C++ N + + +C+AC
Sbjct: 1473 WECSVCLVRNERSAKKCVACENPGKQ----FKEWHCSLCSVKNEAHAIKCVAC 1521
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 235 TSSVSNNRSGQTSSLQPSSGQKAVDVGQ--MWQCNMCTLLNQPLALTCEACG--TQRNKS 290
TS+VS S +TS P SG + + + W C++C + N+ A C AC +++N++
Sbjct: 1698 TSAVSTPASSETSK-APKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQT 1756
Query: 291 VG---------------NLKG-------WSCKFCTLDNSSLSERCLACGEWRYSNGPPIS 328
+G W C C + N S S +C+AC + ++ P
Sbjct: 1757 TAISTPASSEISKAPKSGFEGMFIRKGQWDCSVCCVQNESSSLKCVACDASKPTHKPIAE 1816
Query: 329 TPGPY 333
P +
Sbjct: 1817 APSAF 1821
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 31/100 (31%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRN-----------------------------KSVGNL 294
W C++C + N+P C AC ++ +SV +
Sbjct: 1419 WDCSICLVRNEPTVSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFST 1478
Query: 295 K--GWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGP 332
K W C C + N S +C AC R + P S P P
Sbjct: 1479 KEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTP 1518
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 29/110 (26%)
Query: 235 TSSVSNNRSGQTSSLQPSSGQKAVDVGQ--MWQCNMCTLLNQPLALTCEACGT--QRNKS 290
TS+VS S +TS P SG + + + W C++C + N+ A C AC ++N++
Sbjct: 1639 TSAVSTPASSETSK-APKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQT 1697
Query: 291 VGNLKG------------------------WSCKFCTLDNSSLSERCLAC 316
+ W C C + N + + +C+AC
Sbjct: 1698 TSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIAC 1747
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 297 WSCKFCTLDNSSLSERCLACGEWRYSN----GPPISTPGPYPGT 336
W C C+L N+S +++C++C SN GPP++ P T
Sbjct: 1356 WHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKT 1399
>sp|A0JMQ9|ZRN1B_DANRE Ubiquitin thioesterase zranb1-B OS=Danio rerio GN=zranb1b PE=2 SV=1
Length = 716
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 55/163 (33%), Gaps = 50/163 (30%)
Query: 208 CGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAV--------D 259
C ++ N+ I E SS SS S+ + G T + P S + +
Sbjct: 27 CRAQRHNAPIITEEPFKSS-----SSLDPSLCTTQGGSTLLICPDSSARPRVRIADELPE 81
Query: 260 VGQMWQCNMCTLLNQPLALTCEACGTQ--------------------------------- 286
W C+MCT LN P A+ C C +Q
Sbjct: 82 TSSKWSCHMCTYLNWPRAIRCTQCLSQRQQGSQQHSPLSPSETPQTSGSRPSPVTSDPCE 141
Query: 287 ----RNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGP 325
RN+ + + W C CT +N S RC+ C + S P
Sbjct: 142 EYNDRNRLNMHAQRWPCSACTYENWPKSLRCVVCDHPKPSGSP 184
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 258 VDVGQMWQCNMCTLLNQPLALTCEACGTQRNKS 290
D+G W C CT N P A+ C C QR+ +
Sbjct: 2 TDLGLKWSCEYCTYENWPSAIKCTMCRAQRHNA 34
>sp|Q9VH90|TRBID_DROME Ubiquitin thioesterase trabid OS=Drosophila melanogaster GN=trbd
PE=1 SV=1
Length = 778
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 243 SGQTSSLQPSSGQKAVDVG--QMWQCNMCTLLNQPLALTCEACGTQR 287
S SLQP S + +V + W C +CT LN P +L C C T+R
Sbjct: 70 SSTCYSLQPQSQARQSNVADSEKWPCKVCTYLNWPRSLRCVQCCTKR 116
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 242 RSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVG 292
R +S+ P QK V + W CN CT N P ++ C CG R + +
Sbjct: 215 RESSSSAAVPPQQQKQCYVSK-WACNSCTYENWPRSIKCSMCGKTREREIS 264
>sp|Q9JLG8|CAN15_MOUSE Calpain-15 OS=Mus musculus GN=Solh PE=1 SV=1
Length = 1095
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 261 GQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNL 294
G W C CTL N P+A +C ACG R S+ +
Sbjct: 150 GSGWACQRCTLHNTPVASSCSACGGPRKLSLPRI 183
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 20/81 (24%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRNK---------SVGNLKGWSCKFCTLDNSSLSERCL 314
W C CT LN C C R+K SV K W C CT N E C
Sbjct: 7 WSCARCTFLNPAGQRQCSICEAPRHKPDLDQILRLSVEEQK-WPCARCTFRNFLGKEACE 65
Query: 315 ACGEWRYSNGPPISTPGPYPG 335
CG TP P PG
Sbjct: 66 VCG----------FTPEPVPG 76
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 296 GWSCKFCTLDNSSLSERCLACGEWRYSNGPPI 327
GW+C+ CTL N+ ++ C ACG R + P I
Sbjct: 152 GWACQRCTLHNTPVASSCSACGGPRKLSLPRI 183
>sp|Q9NYJ8|TAB2_HUMAN TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 OS=Homo
sapiens GN=TAB2 PE=1 SV=1
Length = 693
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 259 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 288
D G W C CT LN P + CE C R+
Sbjct: 663 DEGAQWNCTACTFLNHPALIRCEQCEMPRH 692
>sp|Q99K90|TAB2_MOUSE TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 OS=Mus
musculus GN=Tab2 PE=1 SV=1
Length = 693
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 245 QTSSLQPSSGQKAVDV-GQMWQCNMCTLLNQPLALTCEACGTQRN 288
Q S+++ Q A D G W C CT LN P + CE C R+
Sbjct: 648 QRSTIKAPKTQDAEDEEGAQWNCTACTFLNHPALIRCEQCEMPRH 692
>sp|E1BDF2|SHRPN_BOVIN Sharpin OS=Bos taurus GN=SHARPIN PE=3 SV=1
Length = 409
Score = 34.7 bits (78), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 244 GQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQR 287
G + QP+S + W C CT +N P CE C TQR
Sbjct: 322 GLPPTPQPTSSSLPSPLQPGWPCPSCTFINAPSRPGCEMCSTQR 365
>sp|Q8K203|NEIL3_MOUSE Endonuclease 8-like 3 OS=Mus musculus GN=Neil3 PE=1 SV=1
Length = 606
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 262 QMWQCNMCTLLNQPLALTCEACGTQR 287
+ W C +CTL+N+P A C+AC T R
Sbjct: 320 EQWSCVVCTLINRPSAKACDACLTTR 345
>sp|Q6NZP1|ZRAB3_MOUSE DNA annealing helicase and endonuclease ZRANB3 OS=Mus musculus
GN=Zranb3 PE=1 SV=1
Length = 1069
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVG 292
WQC CT LN P CE C R+++ G
Sbjct: 621 WQCGFCTFLNNPGLPYCEMCENPRSRAAG 649
>sp|O75808|CAN15_HUMAN Calpain-15 OS=Homo sapiens GN=SOLH PE=2 SV=1
Length = 1086
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNL--------KGWSCKFCTLDNSSLSERCLA 315
W C CT LN C C R+K N + W C CT N E C
Sbjct: 7 WSCVRCTFLNPAGQRQCSICEAPRHKPDLNHILRLSVEEQKWPCARCTFRNFLGKEACEV 66
Query: 316 CGEWRYSNGPPISTPGPYPG 335
CG TP P PG
Sbjct: 67 CG----------FTPEPAPG 76
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 285 TQRNKSVGNLKGWSCKFCTLDNSSLSERCLACG 317
T + S + WSC CTL N +++ RC ACG
Sbjct: 332 TPASPSSPDFTTWSCAKCTLRNPTVAPRCSACG 364
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNL 294
W C CTL N P+A +C CG R S+ +
Sbjct: 147 WACPRCTLHNTPVASSCSVCGGPRRLSLPRI 177
>sp|B3R8S4|ASPD_CUPTR Probable L-aspartate dehydrogenase OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=nadX PE=3 SV=1
Length = 266
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 30 VAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQIL 89
+A++++ R+ +V++LS A +L +GG EV R+P R W P EQ+
Sbjct: 102 MAERLEAAARRGGTQVQLLSGAIGAIDALAAARVGGLDEVIYTGRKPARAWTGTPAEQLF 161
Query: 90 D 90
D
Sbjct: 162 D 162
>sp|Q0K391|ASPD_CUPNH Probable L-aspartate dehydrogenase OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=nadX PE=3
SV=1
Length = 266
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 30 VAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQIL 89
+A++++ R+ +V++LS A +L +GG EV R+P R W P EQ+
Sbjct: 102 MAERLEAAARRGGTQVQLLSGAIGAIDALAAARVGGLDEVIYTGRKPARAWAGTPAEQLF 161
Query: 90 D 90
D
Sbjct: 162 D 162
>sp|Q5U303|TAB2_RAT TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 OS=Rattus
norvegicus GN=Tab2 PE=2 SV=2
Length = 693
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 261 GQMWQCNMCTLLNQPLALTCEACGTQRN 288
G W C CT LN P + CE C R+
Sbjct: 665 GAQWNCTACTFLNHPALIRCEQCEMPRH 692
>sp|Q5RFW2|TAB2_DANRE TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 OS=Danio
rerio GN=tab2 PE=1 SV=1
Length = 711
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 259 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 288
D G W C CT LN P CE C RN
Sbjct: 681 DDGVQWSCTACTFLNHPALNRCEECEFPRN 710
>sp|P31702|GSPE1_ERWCH Type II secretion system protein E OS=Erwinia chrysanthemi GN=outE
PE=3 SV=1
Length = 498
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 20/174 (11%)
Query: 167 HGALLPSGPNRIGGDSSIKAALSPIQAA---AMAAERRLHDDMW-CGSKSLNSDIDVRED 222
HG +L +GP G +++ AALSP+ +A M E + ++ G +N +D+
Sbjct: 254 HGIILVTGPTASGKSTTLYAALSPLNSAERNIMTVEDPIEYELEGIGQTQVNPKVDMTFA 313
Query: 223 VGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCN--------MCTLLNQ 274
G + V R G+T+ + + V N + + +
Sbjct: 314 RGLRAILRQDPDVVLVGEIRDGETAQIAVQASLTGHLVLSTLHTNSALGALSRLQDMGIE 373
Query: 275 PLALTCEACGTQRNKSVGNLKGWSCKFC----TLDNSSLSERCLACGEWRYSNG 324
P L+ G + V L C C T+D+ + LA G Y G
Sbjct: 374 PFLLSTSLLGVLAQRLVRTL----CPSCRQPYTIDHEQAEQTGLAAGTTLYHPG 423
>sp|Q8TAT5|NEIL3_HUMAN Endonuclease 8-like 3 OS=Homo sapiens GN=NEIL3 PE=1 SV=3
Length = 605
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 262 QMWQCNMCTLLNQPLALTCEACGTQR 287
+ W C +CTL+N+P + C+AC T R
Sbjct: 319 EHWTCVVCTLINKPSSKACDACLTSR 344
>sp|Q7ZXH3|TAB3_XENLA Mitogen-activated protein kinase kinase kinase 7-interacting
protein 3 homolog OS=Xenopus laevis GN=map3k7ip3 PE=2
SV=1
Length = 692
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 261 GQMWQCNMCTLLNQPLALTCEACGTQR 287
G W CN CT LN P CE C R
Sbjct: 664 GSPWNCNSCTFLNHPALNRCEQCEMPR 690
>sp|Q8TAT6|NPL4_HUMAN Nuclear protein localization protein 4 homolog OS=Homo sapiens
GN=NPLOC4 PE=1 SV=3
Length = 608
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 254 GQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRN 288
G MW C CT +NQP CE C R
Sbjct: 574 GSTHTATAAMWACQHCTFMNQPGTGHCEMCSLPRT 608
>sp|Q9ES54|NPL4_RAT Nuclear protein localization protein 4 homolog OS=Rattus norvegicus
GN=Nploc4 PE=1 SV=3
Length = 608
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 263 MWQCNMCTLLNQPLALTCEACGTQRN 288
MW C CT +NQP CE C R
Sbjct: 583 MWACQHCTFMNQPGTGHCEMCSLPRT 608
>sp|P60670|NPL4_MOUSE Nuclear protein localization protein 4 homolog OS=Mus musculus
GN=Nploc4 PE=1 SV=3
Length = 608
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 263 MWQCNMCTLLNQPLALTCEACGTQRN 288
MW C CT +NQP CE C R
Sbjct: 583 MWACQHCTFMNQPGTGHCEMCSLPRT 608
>sp|Q9H0F6|SHRPN_HUMAN Sharpin OS=Homo sapiens GN=SHARPIN PE=1 SV=1
Length = 387
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 250 QPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQR 287
QP++ + W C CT +N P CE C TQR
Sbjct: 338 QPAASSLPSPLQPSWSCPSCTFINAPDRPGCEMCSTQR 375
>sp|P04821|CDC25_YEAST Cell division control protein 25 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC25 PE=1 SV=1
Length = 1589
Score = 32.3 bits (72), Expect = 4.9, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 146 RQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDD 205
R P S+ S L+A+ + A H A SG N +++ SP A A+
Sbjct: 165 RNPSKSRRGSSTLSASLSNA-HNAETSSGHN-----NTVSMNNSPFSAPNDASH------ 212
Query: 206 MWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKA 257
+ S + NS+ + +D+ S D S T+++ NN ++LQ +SG+KA
Sbjct: 213 ITPQSSNFNSNASLSQDMTKSADGSSEMNTNAIMNNNE---TNLQ-TSGEKA 260
>sp|Q3MHN7|NEIL3_BOVIN Endonuclease 8-like 3 OS=Bos taurus GN=NEIL3 PE=2 SV=1
Length = 606
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 262 QMWQCNMCTLLNQPLALTCEACGTQR 287
+ W C +CTL+N+ + TC+AC T R
Sbjct: 321 EQWTCEVCTLINKLSSKTCDACLTSR 346
>sp|Q8N5C8|TAB3_HUMAN TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 OS=Homo
sapiens GN=TAB3 PE=1 SV=2
Length = 712
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 233 SKTSSVSNNRSGQTSSLQPSSGQKAVDV-GQMWQCNMCTLLNQPLALTCEACGTQR 287
++ ++ +R+G T S P + + D G W C+ CT LN P CE C R
Sbjct: 657 TQAAAADEHRTGSTQS--PRTQPRDEDYEGAPWNCDSCTFLNHPALNRCEQCEMPR 710
>sp|P49790|NU153_HUMAN Nuclear pore complex protein Nup153 OS=Homo sapiens GN=NUP153 PE=1
SV=2
Length = 1475
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 241 NRSGQT--SSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQR 287
N+SG+T S+ G K V W C+ C + N+P A+ C AC T +
Sbjct: 701 NKSGKTTLSASGTGFGDKFKPVIGTWDCDTCLVQNKPEAIKCVACETPK 749
>sp|P49791|NU153_RAT Nuclear pore complex protein Nup153 OS=Rattus norvegicus GN=Nup153
PE=1 SV=1
Length = 1468
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 42/110 (38%)
Query: 263 MWQCNMCTLLNQPLALTCEACGTQR----------------------------------- 287
W C+ C + N+P A+ C AC T +
Sbjct: 724 TWDCDTCLVQNKPEAVKCVACETPKPGTGVKRALPLTVASESPVTASSSTTVTTGTLGFG 783
Query: 288 NKSVGNLKGWSCKFCTLDNSSLSERCLACGEWR-------YSNGPPISTP 330
+K + W C C + N + RC++C + SN P+S P
Sbjct: 784 DKFKRPVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLP 833
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,877,813
Number of Sequences: 539616
Number of extensions: 5473771
Number of successful extensions: 17176
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 16943
Number of HSP's gapped (non-prelim): 249
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)