Query 019784
Match_columns 336
No_of_seqs 341 out of 923
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08325 WLM: WLM domain; Int 100.0 5.5E-54 1.2E-58 388.1 19.7 180 8-203 2-186 (186)
2 KOG4842 Protein involved in si 99.9 1.4E-23 3E-28 195.7 9.2 194 7-215 30-237 (278)
3 KOG4842 Protein involved in si 99.5 6.4E-15 1.4E-19 138.0 5.0 117 8-126 117-241 (278)
4 PF01863 DUF45: Protein of unk 99.5 4.6E-14 9.9E-19 127.2 8.2 64 55-124 137-200 (205)
5 COG1451 Predicted metal-depend 99.3 1.4E-11 2.9E-16 114.9 7.9 65 54-124 147-211 (223)
6 PF00641 zf-RanBP: Zn-finger i 98.3 1.9E-07 4.2E-12 60.6 1.2 27 262-288 3-29 (30)
7 PF00641 zf-RanBP: Zn-finger i 98.3 2.3E-07 5.1E-12 60.3 1.4 30 293-322 1-30 (30)
8 KOG4198 RNA-binding Ran Zn-fin 98.0 3.7E-06 8.1E-11 80.8 4.0 68 257-324 58-168 (280)
9 smart00731 SprT SprT homologue 97.9 4.8E-06 1E-10 72.6 1.7 59 56-118 31-95 (146)
10 smart00547 ZnF_RBZ Zinc finger 97.6 2.4E-05 5.2E-10 48.9 1.5 24 263-286 2-25 (26)
11 smart00547 ZnF_RBZ Zinc finger 97.6 2.6E-05 5.5E-10 48.8 1.5 25 295-319 1-25 (26)
12 PF10263 SprT-like: SprT-like 97.4 0.00024 5.2E-09 61.6 5.5 64 50-117 23-97 (157)
13 PF12773 DZR: Double zinc ribb 97.0 0.00077 1.7E-08 48.2 3.3 50 266-317 1-50 (50)
14 KOG4198 RNA-binding Ran Zn-fin 96.4 0.0023 5E-08 61.8 3.3 65 258-322 135-207 (280)
15 KOG4477 RING1 interactor RYBP 96.2 0.0023 5E-08 58.4 1.9 35 256-290 17-51 (228)
16 KOG4477 RING1 interactor RYBP 96.1 0.002 4.3E-08 58.8 0.6 30 293-322 21-50 (228)
17 PRK14559 putative protein seri 95.9 0.0064 1.4E-07 65.1 3.7 50 265-321 3-52 (645)
18 PRK04351 hypothetical protein; 95.5 0.034 7.3E-07 49.2 6.1 52 60-115 37-95 (149)
19 KOG4345 NF-kappa B regulator A 94.0 0.0061 1.3E-07 64.8 -2.8 60 261-320 5-115 (774)
20 PRK04860 hypothetical protein; 93.6 0.092 2E-06 47.0 4.2 32 84-115 59-97 (160)
21 KOG4345 NF-kappa B regulator A 93.4 0.037 7.9E-07 59.1 1.5 68 257-324 85-213 (774)
22 COG3091 SprT Zn-dependent meta 93.3 0.072 1.6E-06 47.4 3.0 31 85-115 58-95 (156)
23 PRK03982 heat shock protein Ht 90.5 0.46 9.9E-06 45.8 5.3 66 34-104 74-141 (288)
24 PF04450 BSP: Peptidase of pla 89.9 0.27 5.9E-06 45.6 3.0 99 22-124 25-132 (205)
25 PF08325 WLM: WLM domain; Int 89.3 1.1 2.3E-05 41.1 6.4 80 85-165 83-185 (186)
26 PRK03001 M48 family peptidase; 88.8 0.58 1.3E-05 45.0 4.5 69 30-103 69-139 (283)
27 PF13248 zf-ribbon_3: zinc-rib 88.6 0.27 5.8E-06 30.9 1.4 23 297-319 3-25 (26)
28 PRK04897 heat shock protein Ht 88.4 0.61 1.3E-05 45.3 4.5 70 30-104 82-153 (298)
29 cd00350 rubredoxin_like Rubred 87.8 0.32 6.9E-06 32.2 1.5 25 297-321 2-28 (33)
30 COG0501 HtpX Zn-dependent prot 87.4 0.77 1.7E-05 43.4 4.4 73 26-104 101-173 (302)
31 PRK01265 heat shock protein Ht 86.7 1.3 2.9E-05 43.8 5.8 68 32-104 87-156 (324)
32 PF06114 DUF955: Domain of unk 86.6 0.91 2E-05 36.1 3.8 61 56-124 16-78 (122)
33 KOG3931 Uncharacterized conser 86.5 1.2 2.7E-05 44.7 5.3 65 59-125 76-168 (484)
34 PF13248 zf-ribbon_3: zinc-rib 86.2 0.45 9.7E-06 29.9 1.4 24 263-286 2-25 (26)
35 PRK03072 heat shock protein Ht 86.0 1.4 3E-05 42.8 5.3 70 30-104 72-143 (288)
36 PRK02870 heat shock protein Ht 85.1 2.6 5.7E-05 42.0 7.0 44 55-103 145-188 (336)
37 PF13240 zinc_ribbon_2: zinc-r 84.7 0.55 1.2E-05 28.8 1.2 21 299-319 2-22 (23)
38 PF13485 Peptidase_MA_2: Pepti 83.6 0.9 2E-05 36.4 2.5 23 83-105 20-42 (128)
39 PF05569 Peptidase_M56: BlaR1 82.9 1.5 3.2E-05 42.0 4.1 27 82-108 190-216 (299)
40 PRK01345 heat shock protein Ht 82.1 1.8 4E-05 42.5 4.4 65 34-103 73-139 (317)
41 PRK05457 heat shock protein Ht 81.9 2 4.4E-05 41.6 4.6 60 38-103 87-149 (284)
42 cd00729 rubredoxin_SM Rubredox 81.6 0.82 1.8E-05 30.6 1.2 26 296-321 2-29 (34)
43 PF10026 DUF2268: Predicted Zn 81.3 3.5 7.6E-05 37.5 5.7 83 27-118 5-98 (195)
44 PRK14714 DNA polymerase II lar 81.2 1.5 3.3E-05 50.2 3.9 54 263-324 667-723 (1337)
45 PRK02391 heat shock protein Ht 80.5 2.8 6E-05 40.9 5.0 67 33-104 81-149 (296)
46 COG5100 NPL4 Nuclear pore prot 80.5 0.43 9.4E-06 48.6 -0.6 25 296-320 546-570 (571)
47 cd04270 ZnMc_TACE_like Zinc-de 80.2 1.3 2.9E-05 41.7 2.6 26 82-107 161-186 (244)
48 PF13240 zinc_ribbon_2: zinc-r 77.5 1.4 3E-05 27.1 1.2 22 265-286 1-22 (23)
49 PF01435 Peptidase_M48: Peptid 77.3 1.6 3.5E-05 39.2 2.2 38 66-107 71-108 (226)
50 COG4219 MecR1 Antirepressor re 76.7 1.4 3.1E-05 43.7 1.7 26 78-103 180-205 (337)
51 COG5100 NPL4 Nuclear pore prot 74.7 0.73 1.6E-05 47.0 -0.9 25 263-287 546-570 (571)
52 cd00730 rubredoxin Rubredoxin; 74.7 1.9 4.1E-05 31.4 1.5 9 295-303 33-41 (50)
53 COG4900 Predicted metallopepti 74.1 4.8 0.0001 34.4 4.0 47 64-114 60-114 (133)
54 COG1592 Rubrerythrin [Energy p 72.1 2 4.3E-05 38.9 1.3 11 263-273 134-144 (166)
55 KOG3854 SPRT-like metalloprote 71.8 2.9 6.2E-05 43.5 2.5 50 56-111 319-381 (505)
56 PF01447 Peptidase_M4: Thermol 70.6 2.5 5.4E-05 37.4 1.6 23 78-100 125-147 (150)
57 cd04271 ZnMc_ADAM_fungal Zinc- 69.8 1.9 4.1E-05 40.4 0.7 17 90-106 147-163 (228)
58 PF10058 DUF2296: Predicted in 69.2 2.5 5.5E-05 31.2 1.1 36 271-306 16-54 (54)
59 KOG0957 PHD finger protein [Ge 69.1 7.4 0.00016 41.0 4.8 61 256-318 111-190 (707)
60 PF13699 DUF4157: Domain of un 66.3 3.7 8.1E-05 32.4 1.6 33 65-102 43-75 (79)
61 TIGR02414 pepN_proteo aminopep 66.2 17 0.00036 40.8 7.2 21 84-104 279-299 (863)
62 KOG1995 Conserved Zn-finger pr 66.1 3 6.6E-05 41.7 1.3 61 259-321 67-148 (351)
63 PF12773 DZR: Double zinc ribb 63.0 5.7 0.00012 28.0 1.9 25 260-284 26-50 (50)
64 PF13203 DUF2201_N: Putative m 63.0 6.6 0.00014 37.6 3.0 56 56-116 33-98 (292)
65 cd04272 ZnMc_salivary_gland_MP 61.4 4.3 9.3E-05 37.3 1.4 19 89-107 146-164 (220)
66 PF09768 Peptidase_M76: Peptid 60.1 10 0.00022 34.4 3.5 37 58-100 47-83 (173)
67 PF12388 Peptidase_M57: Dual-a 59.5 8.8 0.00019 36.0 3.0 36 65-106 116-151 (211)
68 PF15639 Tox-MPTase3: Metallop 58.8 3.3 7.1E-05 36.1 0.1 34 65-99 71-111 (135)
69 cd04267 ZnMc_ADAM_like Zinc-de 58.7 4.8 0.0001 35.8 1.1 22 86-107 131-152 (192)
70 PF13688 Reprolysin_5: Metallo 58.7 6 0.00013 35.2 1.8 97 7-106 48-160 (196)
71 PRK13267 archaemetzincin-like 58.5 25 0.00054 32.0 5.7 82 20-105 52-142 (179)
72 PF00301 Rubredoxin: Rubredoxi 57.7 4.2 9.1E-05 29.3 0.5 10 294-303 32-41 (47)
73 COG0308 PepN Aminopeptidase N 57.1 6.5 0.00014 43.8 2.1 23 82-104 301-323 (859)
74 PF13582 Reprolysin_3: Metallo 57.0 4.2 9.1E-05 33.4 0.4 16 90-105 109-124 (124)
75 cd04269 ZnMc_adamalysin_II_lik 56.7 7.9 0.00017 34.6 2.2 22 86-107 129-150 (194)
76 PRK14015 pepN aminopeptidase N 56.5 23 0.0005 39.8 6.1 20 85-104 293-312 (875)
77 PF12725 DUF3810: Protein of u 56.4 3.4 7.3E-05 40.8 -0.3 46 83-128 191-238 (318)
78 COG4324 Predicted aminopeptida 55.7 18 0.00039 35.5 4.5 48 84-131 193-241 (376)
79 PF14521 Aspzincin_M35: Lysine 54.8 6 0.00013 34.6 1.1 20 86-105 94-113 (148)
80 KOG1244 Predicted transcriptio 54.4 4.4 9.6E-05 39.5 0.2 12 292-303 318-329 (336)
81 PF13574 Reprolysin_2: Metallo 53.2 5.9 0.00013 35.3 0.8 20 88-107 111-130 (173)
82 PRK04023 DNA polymerase II lar 53.1 15 0.00033 41.7 4.0 55 259-323 622-676 (1121)
83 PRK04136 rpl40e 50S ribosomal 52.9 8.5 0.00018 28.0 1.4 25 262-286 13-37 (48)
84 PF13058 DUF3920: Protein of u 52.6 5.8 0.00013 33.8 0.6 20 82-101 70-89 (126)
85 KOG1046 Puromycin-sensitive am 52.3 9.7 0.00021 42.6 2.5 31 85-124 321-351 (882)
86 PF03833 PolC_DP2: DNA polymer 51.8 4.8 0.0001 44.6 0.0 51 262-322 654-704 (900)
87 KOG1995 Conserved Zn-finger pr 51.6 14 0.0003 37.2 3.1 32 259-290 214-246 (351)
88 COG1773 Rubredoxin [Energy pro 50.8 8.3 0.00018 28.8 1.1 40 263-304 3-44 (55)
89 PF06262 DUF1025: Possibl zinc 50.2 10 0.00022 31.2 1.7 16 86-101 71-86 (97)
90 PF01421 Reprolysin: Reprolysi 49.9 11 0.00025 33.7 2.1 25 83-107 126-150 (199)
91 PRK15410 DgsA anti-repressor M 49.5 15 0.00033 35.5 3.0 62 58-124 117-189 (260)
92 PF04810 zf-Sec23_Sec24: Sec23 49.3 8.1 0.00018 26.5 0.8 13 295-307 23-35 (40)
93 cd04273 ZnMc_ADAMTS_like Zinc- 48.7 4.7 0.0001 36.7 -0.6 20 88-107 140-159 (207)
94 PF06167 Peptidase_M90: Glucos 48.0 18 0.00038 34.7 3.2 93 30-125 78-202 (253)
95 PF10023 DUF2265: Predicted am 47.0 30 0.00066 34.7 4.7 42 83-124 160-202 (337)
96 PF01433 Peptidase_M1: Peptida 46.0 15 0.00033 35.9 2.4 19 85-103 292-310 (390)
97 TIGR02412 pepN_strep_liv amino 45.8 11 0.00024 41.7 1.7 19 85-103 284-302 (831)
98 COG4260 Membrane protease subu 45.1 14 0.0003 36.5 1.9 53 69-128 124-177 (345)
99 PF02102 Peptidase_M35: Deuter 44.1 12 0.00025 37.9 1.4 20 87-106 296-317 (359)
100 COG1592 Rubrerythrin [Energy p 43.6 13 0.00028 33.7 1.4 23 277-303 134-156 (166)
101 KOG3965 Uncharacterized conser 43.3 1.1E+02 0.0025 27.4 7.2 36 20-64 34-69 (160)
102 KOG2760 Vacuolar sorting prote 42.4 19 0.00042 36.9 2.6 47 259-305 86-139 (432)
103 cd06258 Peptidase_M3_like The 42.2 33 0.00072 33.6 4.2 22 19-40 35-56 (365)
104 PRK11788 tetratricopeptide rep 42.0 15 0.00033 35.3 1.8 27 294-320 352-378 (389)
105 TIGR02411 leuko_A4_hydro leuko 40.2 15 0.00032 39.4 1.4 16 88-103 279-294 (601)
106 cd04276 ZnMc_MMP_like_2 Zinc-d 40.0 3E+02 0.0066 25.3 10.4 85 21-105 20-133 (197)
107 PF10571 UPF0547: Uncharacteri 39.5 17 0.00038 22.9 1.1 22 298-319 2-23 (26)
108 PF10460 Peptidase_M30: Peptid 39.2 14 0.0003 37.4 1.0 20 85-104 136-155 (366)
109 PRK13130 H/ACA RNA-protein com 38.8 25 0.00055 26.3 2.1 32 297-330 6-38 (56)
110 cd00203 ZnMc Zinc-dependent me 38.8 15 0.00032 31.5 1.0 22 86-107 94-115 (167)
111 PF00413 Peptidase_M10: Matrix 38.6 16 0.00034 30.9 1.2 23 83-105 100-122 (154)
112 PRK04136 rpl40e 50S ribosomal 38.1 20 0.00044 26.1 1.4 24 295-318 13-36 (48)
113 KOG2719 Metalloprotease [Gener 36.3 36 0.00078 35.2 3.4 66 34-102 223-294 (428)
114 COG0675 Transposase and inacti 36.3 17 0.00036 34.2 1.0 27 278-310 310-336 (364)
115 COG2856 Predicted Zn peptidase 36.2 68 0.0015 30.1 5.0 22 84-105 68-89 (213)
116 cd04277 ZnMc_serralysin_like Z 36.2 51 0.0011 29.2 4.1 38 66-105 93-130 (186)
117 cd04278 ZnMc_MMP Zinc-dependen 35.9 37 0.0008 29.3 3.1 23 84-106 103-125 (157)
118 PF12898 Stc1: Stc1 domain; I 35.8 32 0.00069 27.4 2.4 28 294-322 35-62 (84)
119 PF10463 Peptidase_U49: Peptid 35.7 24 0.00051 33.0 1.9 19 88-106 101-119 (206)
120 cd04268 ZnMc_MMP_like Zinc-dep 35.7 23 0.0005 30.3 1.7 22 86-107 92-113 (165)
121 PRK14714 DNA polymerase II lar 34.4 44 0.00095 39.0 4.0 38 277-322 667-704 (1337)
122 PF07282 OrfB_Zn_ribbon: Putat 33.9 26 0.00057 26.1 1.6 28 279-307 30-57 (69)
123 PRK05452 anaerobic nitric oxid 33.8 20 0.00044 37.2 1.3 12 310-321 458-469 (479)
124 KOG3658 Tumor necrosis factor- 33.1 56 0.0012 35.8 4.3 101 7-107 280-411 (764)
125 KOG3607 Meltrins, fertilins an 32.8 23 0.0005 38.9 1.5 22 85-106 320-341 (716)
126 cd00491 4Oxalocrotonate_Tautom 32.1 1.8E+02 0.0038 20.4 5.7 47 9-55 2-49 (58)
127 PRK14873 primosome assembly pr 30.8 35 0.00076 37.1 2.5 51 263-321 383-433 (665)
128 PF14445 Prok-RING_2: Prokaryo 30.6 4.3 9.3E-05 30.0 -3.0 42 262-317 6-48 (57)
129 PF14891 Peptidase_M91: Effect 30.6 16 0.00035 32.6 -0.1 18 89-106 104-121 (174)
130 KOG2041 WD40 repeat protein [G 30.1 58 0.0013 36.2 3.8 60 262-321 1116-1185(1189)
131 TIGR00595 priA primosomal prot 29.9 36 0.00078 35.6 2.3 51 263-320 213-263 (505)
132 COG1552 RPL40A Ribosomal prote 29.2 14 0.0003 27.1 -0.6 25 263-287 14-38 (50)
133 PHA02456 zinc metallopeptidase 28.4 25 0.00053 30.3 0.7 15 87-101 78-92 (141)
134 smart00235 ZnMc Zinc-dependent 28.2 25 0.00055 29.5 0.7 18 90-107 88-105 (140)
135 COG2093 DNA-directed RNA polym 28.0 31 0.00067 26.6 1.1 25 297-321 5-29 (64)
136 PRK09672 phage exclusion prote 27.7 29 0.00062 34.4 1.1 18 87-104 164-181 (305)
137 COG3058 FdhE Uncharacterized p 27.7 17 0.00038 35.6 -0.4 47 275-321 183-236 (308)
138 cd04279 ZnMc_MMP_like_1 Zinc-d 27.6 40 0.00087 29.0 1.9 23 85-107 101-123 (156)
139 TIGR00595 priA primosomal prot 26.5 53 0.0011 34.4 2.8 37 263-305 222-262 (505)
140 PF01457 Peptidase_M8: Leishma 26.2 43 0.00094 35.2 2.1 20 84-103 206-225 (521)
141 COG5141 PHD zinc finger-contai 26.1 24 0.00051 37.3 0.2 54 264-318 194-255 (669)
142 PF13583 Reprolysin_4: Metallo 26.0 34 0.00073 31.4 1.2 74 23-107 74-156 (206)
143 PRK09928 choline transport pro 26.0 1.6E+02 0.0034 32.5 6.3 53 17-70 539-598 (679)
144 COG1198 PriA Primosomal protei 25.1 62 0.0013 35.8 3.1 49 264-319 436-484 (730)
145 PF14247 DUF4344: Domain of un 24.5 36 0.00078 32.1 1.1 21 85-105 89-109 (220)
146 PF02318 FYVE_2: FYVE-type zin 24.4 30 0.00065 29.0 0.5 42 265-319 56-103 (118)
147 COG1997 RPL43A Ribosomal prote 24.4 41 0.00088 27.5 1.2 29 278-307 36-64 (89)
148 KOG4443 Putative transcription 24.3 38 0.00082 36.8 1.3 18 261-286 60-77 (694)
149 KOG0593 Predicted protein kina 24.0 55 0.0012 33.0 2.3 37 82-118 77-113 (396)
150 KOG1299 Vacuolar sorting prote 23.3 2E+02 0.0044 30.5 6.2 67 20-100 178-244 (549)
151 PF11682 DUF3279: Protein of u 23.0 84 0.0018 27.3 3.0 30 293-323 94-123 (128)
152 KOG1512 PHD Zn-finger protein 22.8 32 0.00068 34.1 0.3 17 292-308 349-366 (381)
153 PRK12496 hypothetical protein; 22.2 51 0.0011 29.5 1.5 10 191-200 81-90 (164)
154 COG3227 LasB Zinc metalloprote 22.0 23 0.00051 37.1 -0.7 40 59-101 307-350 (507)
155 PF05548 Peptidase_M11: Gameto 21.9 44 0.00096 33.0 1.2 42 57-106 127-168 (314)
156 PRK14873 primosome assembly pr 21.7 61 0.0013 35.4 2.3 12 21-32 88-99 (665)
157 PF09569 RE_ScaI: ScaI restric 21.5 59 0.0013 30.0 1.8 18 81-98 55-72 (191)
158 PF07998 Peptidase_M54: Peptid 21.4 58 0.0013 30.2 1.8 23 85-107 142-164 (194)
159 cd04327 ZnMc_MMP_like_3 Zinc-d 21.4 51 0.0011 29.8 1.4 19 87-105 91-109 (198)
160 PRK11788 tetratricopeptide rep 21.2 56 0.0012 31.4 1.7 26 261-286 352-377 (389)
161 PF14446 Prok-RING_1: Prokaryo 21.0 49 0.0011 24.7 1.0 39 278-319 6-50 (54)
162 KOG1047 Bifunctional leukotrie 20.9 46 0.001 35.7 1.1 18 86-103 286-303 (613)
163 PRK12286 rpmF 50S ribosomal pr 20.8 70 0.0015 23.9 1.8 31 272-308 22-52 (57)
164 PF13398 Peptidase_M50B: Pepti 20.8 53 0.0011 30.0 1.4 15 87-101 21-35 (200)
No 1
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=100.00 E-value=5.5e-54 Score=388.10 Aligned_cols=180 Identities=53% Similarity=0.836 Sum_probs=162.7
Q ss_pred ceEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHH
Q 019784 8 KVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYE 86 (336)
Q Consensus 8 ~v~~i~~L~-~p~~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~ 86 (336)
+|++|++|+ +|++++|++||+|||++|+|||++|+|+|++|+||||.+.++||+|+|+|++|.||||++++ ..|+||+
T Consensus 2 ~v~~I~~L~~~p~~~~A~~lL~rlA~~v~pIM~~~~~~V~~L~E~~P~~~~llG~N~N~G~~I~lrLR~~~~-~~fl~~~ 80 (186)
T PF08325_consen 2 HVHFIKVLPNLPDEEEALELLERLAADVKPIMRKHGWRVGSLEEFYPNGERLLGLNVNKGEKICLRLRTPDD-GGFLPYE 80 (186)
T ss_pred ceeEEeeCCCCcCHHHHHHHHHHHHHHHHHHHHHcCcccCeeeccCCCCCCCcceecCCCcEEEEEeCCCCC-CCEeeHH
Confidence 699999999 99999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHHccccCCCCcccCCCcccCCCCCCCCchHHHHHHHHHHHHhhh
Q 019784 87 QILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRAR 166 (336)
Q Consensus 87 ~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~~G~~g~g~gf~~~G~rLGG~~~~~~~~~~r~~a~~aaekr~~ 166 (336)
.|++|||||||||+|++||.+||++|++|..|++.|+++||+ +||++.|++|||.....+ +.+..
T Consensus 81 ~i~~t~lHELaH~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~---~gf~~~G~~l~~~~~~~~------------~~~~~ 145 (186)
T PF08325_consen 81 TILGTMLHELAHNVHGPHDDKFWKLLDELRKECEELDAKGYT---EGFWSSGRRLGGSSGQPS------------EEREL 145 (186)
T ss_pred HHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhcCCc---cccCCCCcccCCCCcccc------------hhhhh
Confidence 999999999999999999999999999999999999999999 899999999999754433 01111
Q ss_pred hCCcCCCCCccccCCCCc----CCCCCHHHHHHHHHHHHhh
Q 019784 167 HGALLPSGPNRIGGDSSI----KAALSPIQAAAMAAERRLH 203 (336)
Q Consensus 167 ~~~~~~~g~~~LGg~~~~----~~~~~~re~~a~AAerR~~ 203 (336)
....+.+++++|||++.. .+..++||++|+|||||++
T Consensus 146 ~~~~~~~~~~~LgG~s~~~~~~~~~~~~Re~~a~AAerR~~ 186 (186)
T PF08325_consen 146 RGNGLSGGGQRLGGGSSSRPRKAQPKSPREAAAAAAERRLR 186 (186)
T ss_pred hccccCCCCeeCCCCCCCCCCcCCCcCHHHHHHHHHHhhcC
Confidence 123356778999998752 5688999999999999985
No 2
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.4e-23 Score=195.75 Aligned_cols=194 Identities=29% Similarity=0.359 Sum_probs=151.8
Q ss_pred cceEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCH
Q 019784 7 NKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPY 85 (336)
Q Consensus 7 ~~v~~i~~L~-~p~~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~ 85 (336)
+++.+|..+. .|..+.+..+|+++|+.+.|||++|+|.|..+.++++.|..+||+|||+|.+|.|+||...+..+|+|+
T Consensus 30 ~~l~K~~~vss~~~kll~~~llk~iahl~~p~mkEh~f~vti~~Dk~irnq~~sg~nvn~gski~lslr~~~~e~~~lp~ 109 (278)
T KOG4842|consen 30 PHLQKVAVVSSKPNKLLALNLLKEIAHLVSPLMKEHHFKVTILVDKYIRNQRLSGMNVNHGSKIMLSLRCSTDEFQFLPM 109 (278)
T ss_pred cccceeeeeccchHHHHhhhhhhhhhhhhhhhhccccceeEEeehhHHHhhhhhccccCCcceEEEEeeccccccccccc
Confidence 4556666666 779999999999999999999999999999999999999999999999999999999966677789999
Q ss_pred HHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHHccccCCCCcccCCCcccCCCCCCCCchHHHHHHHHHHHHhh
Q 019784 86 EQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRA 165 (336)
Q Consensus 86 ~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~~G~~g~g~gf~~~G~rLGG~~~~~~~~~~r~~a~~aaekr~ 165 (336)
+.++.|++|||+|+..+||+++||..|+.|+.+...+..+|+. .=|.+-+..|||...-.- . + +.
T Consensus 110 e~pmgtylhel~h~lqgPhd~rfl~~L~~Lrad~gii~~mg~h---rW~vg~l~el~g~~nt~v-~--~---------~~ 174 (278)
T KOG4842|consen 110 ECPMGTYLHELTHNLQGPHDKRFLNKLDELRADQGIIEQMGLH---RWFVGNLQELGGRANTRV-N--R---------YP 174 (278)
T ss_pred cccchhhhhhhhhhhcCCChHHHHHHHHHHhhchhHHHHhccc---ceechhhhhcccccceee-c--C---------cc
Confidence 9999999999999999999999999999999999999999987 346667888887532100 0 0 00
Q ss_pred hhCCcCCCCCccccC-------------CCCcCCCCCHHHHHHHHHHHHhhhccccCCCCCCC
Q 019784 166 RHGALLPSGPNRIGG-------------DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNS 215 (336)
Q Consensus 166 ~~~~~~~~g~~~LGg-------------~~~~~~~~~~re~~a~AAerR~~d~~~C~~~~~~~ 215 (336)
..|.-...|-..|++ -+++...-.+|+++++++|++.+.+.||+-....+
T Consensus 175 tLg~stnqG~i~lrlrtdrkkgfR~y~tissTl~heLtr~v~~ehde~fyrLdrql~kek~~a 237 (278)
T KOG4842|consen 175 TLGISTNQGVIVLRLRTDRKKGFRHYETISSTLRHELTREVAAEHDERFYRLDRQLGKEKNNA 237 (278)
T ss_pred ceeeccccceEEEecccchhcccccCCCchHHHHhhhhhhHhhhhhhHHHHHHHHhCcccchh
Confidence 000000011111111 12223344578999999999999999998765444
No 3
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.4e-15 Score=137.98 Aligned_cols=117 Identities=26% Similarity=0.315 Sum_probs=105.2
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHH--HHHHHhhcCceeeeecccCCC------CCCceeeecCCCcEEEEEecCCCCC
Q 019784 8 KVWEVKALKKIGEDDARQILEKVAKQ--VQPIMRKHKWKVRILSEFCPA------NPSLLGINIGGGAEVKLRLRRPNRE 79 (336)
Q Consensus 8 ~v~~i~~L~~p~~~~A~~~L~rlA~~--v~pIM~~~~w~V~~L~Ef~P~------~~~llG~N~N~G~~I~LRLR~~~~~ 79 (336)
-+.....|+.|.+..|+..|++|++. |..+|-.|.|.|+.|.|+-|. +..+||+|.|.| +|.+|||++ +.
T Consensus 117 lhel~h~lqgPhd~rfl~~L~~Lrad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG-~i~lrlrtd-rk 194 (278)
T KOG4842|consen 117 LHELTHNLQGPHDKRFLNKLDELRADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQG-VIVLRLRTD-RK 194 (278)
T ss_pred hhhhhhhhcCCChHHHHHHHHHHhhchhHHHHhcccceechhhhhcccccceeecCccceeeccccc-eEEEecccc-hh
Confidence 33444567789999999999999984 999999999999999999995 357899999999 999999997 45
Q ss_pred CCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHHcc
Q 019784 80 WDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKG 126 (336)
Q Consensus 80 ~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~~G 126 (336)
..|+.|+.|-.|+.|||+|+++..|+..||++-.++-+|-..+++-+
T Consensus 195 kgfR~y~tissTl~heLtr~v~~ehde~fyrLdrql~kek~~ad~~~ 241 (278)
T KOG4842|consen 195 KGFRHYETISSTLRHELTREVAAEHDERFYRLDRQLGKEKNNADQII 241 (278)
T ss_pred cccccCCCchHHHHhhhhhhHhhhhhhHHHHHHHHhCcccchhhhhc
Confidence 68999999999999999999999999999999999999998888754
No 4
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=99.50 E-value=4.6e-14 Score=127.19 Aligned_cols=64 Identities=25% Similarity=0.306 Sum_probs=59.1
Q ss_pred CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 019784 55 NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMA 124 (336)
Q Consensus 55 ~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~ 124 (336)
.++.||.| +....|.|++|. .++|.+.|+||++|||||++|+||+++||+++.+++|+|++...
T Consensus 137 ~ksrWGsc-~~~~~I~ln~~L-----~~~P~~~idYVvvHEL~Hl~~~nHs~~Fw~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 137 MKSRWGSC-SSKGNITLNWRL-----VMAPPEVIDYVVVHELCHLRHPNHSKRFWALVEKYMPDYKERRK 200 (205)
T ss_pred hhhccccC-CCCCcEEeeccc-----ccCCccHHHHHHHHHHHHhccCCCCHHHHHHHHHHCcCHHHHHH
Confidence 47889999 666699999999 58999999999999999999999999999999999999998763
No 5
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=99.25 E-value=1.4e-11 Score=114.91 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=60.3
Q ss_pred CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 019784 54 ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMA 124 (336)
Q Consensus 54 ~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~ 124 (336)
..++.||.+.-+| .|.|+++.. .+|.+.|.||++|||||+.++||+++||+++..++++|+++..
T Consensus 147 ~~k~~WGScs~~~-~i~~~~~l~-----~~p~~~i~YVvvHELaHLke~nHs~~Fw~lv~~~~P~~~~~~~ 211 (223)
T COG1451 147 NMKRRWGSCSKAG-EIRFNWRLV-----MAPEEVIDYVVVHELAHLKEKNHSKRFWRLVEKYMPDYRAAKR 211 (223)
T ss_pred eccceeeeecCCC-cEEeehhhh-----cCCHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHCCChHHHHH
Confidence 3688999999888 999999994 7899999999999999999999999999999999999998864
No 6
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.32 E-value=1.9e-07 Score=60.64 Aligned_cols=27 Identities=37% Similarity=0.903 Sum_probs=13.2
Q ss_pred CCccCCcccccccccCccccccCCCCc
Q 019784 262 QMWQCNMCTLLNQPLALTCEACGTQRN 288 (336)
Q Consensus 262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp 288 (336)
+.|.|+.||+.|++.+..|.+|+++||
T Consensus 3 g~W~C~~C~~~N~~~~~~C~~C~~~rp 29 (30)
T PF00641_consen 3 GDWKCPSCTFMNPASRSKCVACGAPRP 29 (30)
T ss_dssp SSEEETTTTEEEESSSSB-TTT--BTT
T ss_pred cCccCCCCcCCchHHhhhhhCcCCCCc
Confidence 355555555555555555555555554
No 7
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.31 E-value=2.3e-07 Score=60.25 Aligned_cols=30 Identities=33% Similarity=0.768 Sum_probs=24.2
Q ss_pred CCCCcccCCcccccCCcCccccccCCCCCC
Q 019784 293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS 322 (336)
Q Consensus 293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~ 322 (336)
+.+.|.|+.|++.|+.....|.+|+++|++
T Consensus 1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 357899999999999999999999999974
No 8
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=98.04 E-value=3.7e-06 Score=80.84 Aligned_cols=68 Identities=24% Similarity=0.546 Sum_probs=57.9
Q ss_pred CCCCCCCccCCcccccccccCccccccCCCCcCCC------------------------------------C-------C
Q 019784 257 AVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------------------G-------N 293 (336)
Q Consensus 257 ~~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~------------------------------------~-------~ 293 (336)
+....+.|.|+.|++.|....+.|..|+.+.+... . +
T Consensus 58 ~~~~pgdw~c~~c~~~n~arr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~ 137 (280)
T KOG4198|consen 58 DPPRPGDWNCPLCGFHNSARRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWR 137 (280)
T ss_pred CCCCCcccccCccchhhHHHhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCcc
Confidence 44556789999999999999999999987764211 1 5
Q ss_pred CCCcccCCcccccCCcCccccccCCCCCCCC
Q 019784 294 LKGWSCKFCTLDNSSLSERCLACGEWRYSNG 324 (336)
Q Consensus 294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~ 324 (336)
++.|.|+.|+|+|......|--|+.+|+-..
T Consensus 138 ~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a 168 (280)
T KOG4198|consen 138 SGDWECPGCNFHNFARNSECFRCGAKRPLAA 168 (280)
T ss_pred ccCcccCCCCceeccccchhhhcCCcCcccc
Confidence 6899999999999999999999999998755
No 9
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=97.89 E-value=4.8e-06 Score=72.56 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=48.0
Q ss_pred CCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcC------CCchhHHHHHHHHHHH
Q 019784 56 PSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYG------PHNADFYKLWDEIRKE 118 (336)
Q Consensus 56 ~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~------~H~~~F~~ll~~l~~e 118 (336)
+..+|.+..+...|.|+.+.. .-.|.+.|++||+|||||.... +|+++|++++.++...
T Consensus 31 ~~~~G~~~~~~~~I~ln~~l~----~~~~~~~l~~~l~HEm~H~~~~~~g~~~~Hg~~f~~~~~~~~~~ 95 (146)
T smart00731 31 RKTGGRCLLKSAEIRLNPKLL----TENGRDRLRETLLHELCHAALYLFGRGYGHGDEWKRWMRQVNGL 95 (146)
T ss_pred hhhhHHhhcCCCEEEeCHHHH----hhccHHHHHhhHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHcCC
Confidence 455788776567899887763 2357899999999999999988 9999999999888544
No 10
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.63 E-value=2.4e-05 Score=48.91 Aligned_cols=24 Identities=42% Similarity=0.945 Sum_probs=12.9
Q ss_pred CccCCcccccccccCccccccCCC
Q 019784 263 MWQCNMCTLLNQPLALTCEACGTQ 286 (336)
Q Consensus 263 ~W~C~~CT~~N~~~a~~C~aC~~~ 286 (336)
.|.|+.|++.|...+..|.+|+++
T Consensus 2 ~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 2 DWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred cccCCCCCCcChhhhccccccCCc
Confidence 355555555555555555555543
No 11
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.63 E-value=2.6e-05 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.876 Sum_probs=23.6
Q ss_pred CCcccCCcccccCCcCccccccCCC
Q 019784 295 KGWSCKFCTLDNSSLSERCLACGEW 319 (336)
Q Consensus 295 ~~W~C~~CT~~N~~~~~~C~~Cg~~ 319 (336)
+.|.|+.|++.|......|.+|+++
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 4799999999999999999999986
No 12
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=97.42 E-value=0.00024 Score=61.62 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=48.1
Q ss_pred ccCCCCCCceeeecCCCc---EEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCc--------CCCchhHHHHHHHHHH
Q 019784 50 EFCPANPSLLGINIGGGA---EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEY--------GPHNADFYKLWDEIRK 117 (336)
Q Consensus 50 Ef~P~~~~llG~N~N~G~---~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~--------~~H~~~F~~ll~~l~~ 117 (336)
+|-....+-+|...-.+. .|.|+...- ...+.+.|.+||+|||||... .+|++.|.++..++..
T Consensus 23 ~~~~~~~~~~G~~~~~~~~~~~I~ls~~~~----~~~~~~~~~~tL~HEm~H~~~~~~~~~~~~~Hg~~fk~~~~~ig~ 97 (157)
T PF10263_consen 23 TWSKRMKRTAGRCRYKRRSPCEIRLSPKLL----DRNPEEELIDTLLHEMAHAAAYVFGGGRRRGHGKEFKQWARRIGA 97 (157)
T ss_pred EEECCCCCceEEEEECCCCceEEEECHHHH----HhhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHCC
Confidence 343456778898655555 677776653 236789999999999999876 7999999988877744
No 13
>PF12773 DZR: Double zinc ribbon
Probab=96.98 E-value=0.00077 Score=48.16 Aligned_cols=50 Identities=28% Similarity=0.535 Sum_probs=44.3
Q ss_pred CCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccC
Q 019784 266 CNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACG 317 (336)
Q Consensus 266 C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg 317 (336)
|+.|...|+..+..|..|+++-+. .....+.|+.|...|...+..|..||
T Consensus 1 Cp~Cg~~~~~~~~fC~~CG~~l~~--~~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 1 CPHCGTPNPDDAKFCPHCGTPLPP--PDQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCcCCcCCccccCChhhcCChhh--ccCCCCCCcCCcCCCcCCcCccCccc
Confidence 899999999999999999988661 23457999999999999999999997
No 14
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=96.45 E-value=0.0023 Score=61.84 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=54.8
Q ss_pred CCCCCCccCCcccccccccCccccccCCCCcCCC--------CCCCCcccCCcccccCCcCccccccCCCCCC
Q 019784 258 VDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV--------GNLKGWSCKFCTLDNSSLSERCLACGEWRYS 322 (336)
Q Consensus 258 ~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~--------~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~ 322 (336)
....+.|.|+.|+|+|......|-.|+.+|+... +....|.+..+...+......|..|..--+.
T Consensus 135 ~~~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~~~~~~~ 207 (280)
T KOG4198|consen 135 PWRSGDWECPGCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRCNARGEM 207 (280)
T ss_pred CccccCcccCCCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccchhhcccCcc
Confidence 4677899999999999999999999999998743 5678899999998888777788777764443
No 15
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=96.24 E-value=0.0023 Score=58.35 Aligned_cols=35 Identities=31% Similarity=0.714 Sum_probs=29.4
Q ss_pred CCCCCCCCccCCcccccccccCccccccCCCCcCC
Q 019784 256 KAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKS 290 (336)
Q Consensus 256 ~~~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~ 290 (336)
.+..+.+.|.|..|||.|...+..|.+|+..+..+
T Consensus 17 kp~~Deg~WdCsvCTFrNsAeAfkC~vCdvRKGTS 51 (228)
T KOG4477|consen 17 KPNDDEGKWDCSVCTFRNSAEAFKCFVCDVRKGTS 51 (228)
T ss_pred CCccccCceeeeeeeecchhhhhheeeeccccccc
Confidence 34456689999999999999999999999876554
No 16
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=96.06 E-value=0.002 Score=58.78 Aligned_cols=30 Identities=27% Similarity=0.727 Sum_probs=26.9
Q ss_pred CCCCcccCCcccccCCcCccccccCCCCCC
Q 019784 293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS 322 (336)
Q Consensus 293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~ 322 (336)
..+.|.|++|||.|...+.+|.+|+..+--
T Consensus 21 Deg~WdCsvCTFrNsAeAfkC~vCdvRKGT 50 (228)
T KOG4477|consen 21 DEGKWDCSVCTFRNSAEAFKCFVCDVRKGT 50 (228)
T ss_pred ccCceeeeeeeecchhhhhheeeecccccc
Confidence 467899999999999999999999987753
No 17
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=95.90 E-value=0.0064 Score=65.08 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=44.3
Q ss_pred cCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCCCC
Q 019784 265 QCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRY 321 (336)
Q Consensus 265 ~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~ 321 (336)
.|+.|...|+..+..|..||++-.. -.|+.|...|......|..||+.-.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~-------~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTH-------KPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCC-------CcCCCCCCCCCcccccccccCCccc
Confidence 6999999999999999999977421 3699999999999999999999643
No 18
>PRK04351 hypothetical protein; Provisional
Probab=95.50 E-value=0.034 Score=49.22 Aligned_cols=52 Identities=21% Similarity=0.476 Sum_probs=34.6
Q ss_pred eeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhc------C-cCCCchhHHHHHHHH
Q 019784 60 GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHN------E-YGPHNADFYKLWDEI 115 (336)
Q Consensus 60 G~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~------~-~~~H~~~F~~ll~~l 115 (336)
|.-.-+...|.|+-..- .-.+.+.+..||.|||||. . +.+|+++|..++.++
T Consensus 37 G~~~l~~~~I~lnp~ll----~~~~~~~l~~vv~HElcH~~~~~~g~g~~h~g~~fk~~~~~v 95 (149)
T PRK04351 37 GRYLLKDHHIEFNPKML----EEYGLEELIGIIKHELCHYHLHLEGKGYQHRDRDFKELLKQV 95 (149)
T ss_pred heeecCCCeEEeCHHHH----hhccHHHHHhhHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence 34323344666665442 1234789999999999997 2 567888887777665
No 19
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]
Probab=94.03 E-value=0.0061 Score=64.85 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=51.0
Q ss_pred CCCccCCcccccccccCccccccCCCCcCCC-------------------------------------------------
Q 019784 261 GQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------------------------------- 291 (336)
Q Consensus 261 ~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~------------------------------------------------- 291 (336)
...|.|..|++.|.+.+++|.+|...++...
T Consensus 5 ~~~W~~~~~~~~~lp~al~lS~~~~s~~~~~~l~eDifk~~n~~~~~~~sd~~~~r~v~~~~~~p~f~~s~~~r~~~~~s 84 (774)
T KOG4345|consen 5 AEKWACELCDYMTLPMALVLSDFRRSTGAEPGLAEDIFKGKNWDIHAALSDYEQLRQVHEMNLTPSFCESGQPREIIHKS 84 (774)
T ss_pred hHHHHHHhhccccCchhhHHHHHHhccCCCCCcchhhccCCCccceeecccHHHHHhhhccCCCCcccccCCcccccccc
Confidence 3579999999999999999999987766211
Q ss_pred --CCCCCcccCCcccccCCcCccccccCCCC
Q 019784 292 --GNLKGWSCKFCTLDNSSLSERCLACGEWR 320 (336)
Q Consensus 292 --~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R 320 (336)
....+|.|+.|++.|++....|+.|-+.+
T Consensus 85 ~~~~~~k~~~~~~~~lnw~re~R~~~~ls~~ 115 (774)
T KOG4345|consen 85 LIDRNIKWPRPSLQRLNWPREKRLSRGLSHA 115 (774)
T ss_pred cccccccCCchHhhhhhHHHHHHHHHHhhcc
Confidence 12458999999999999999999998876
No 20
>PRK04860 hypothetical protein; Provisional
Probab=93.56 E-value=0.092 Score=47.01 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhhhhhcC-c------CCCchhHHHHHHHH
Q 019784 84 PYEQILDTMLHELCHNE-Y------GPHNADFYKLWDEI 115 (336)
Q Consensus 84 p~~~i~~vllHELaH~~-~------~~H~~~F~~ll~~l 115 (336)
+.+.+..|+.|||||.. | .+||++|-.++.++
T Consensus 59 ~~~~l~~~v~HEl~H~~~~~~~g~~~~Hg~ewk~lm~~v 97 (160)
T PRK04860 59 QQAFIDEVVPHELAHLLVYQLFGRVAPHGKEWQWMMESV 97 (160)
T ss_pred cHHHHHhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 67899999999999975 1 48998888777663
No 21
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]
Probab=93.36 E-value=0.037 Score=59.14 Aligned_cols=68 Identities=12% Similarity=-0.001 Sum_probs=54.3
Q ss_pred CCCCCCCccCCcccccccccCccccccCCCCcCCC--------------------------------CC-----------
Q 019784 257 AVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV--------------------------------GN----------- 293 (336)
Q Consensus 257 ~~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~--------------------------------~~----------- 293 (336)
...+..+|+|+.|+++|.+....|..|-+.+..-. ..
T Consensus 85 ~~~~~~k~~~~~~~~lnw~re~R~~~~ls~~gd~~~~~~q~pq~s~~~qs~~VaL~~~l~~~l~~~dt~~~N~l~w~~h~ 164 (774)
T KOG4345|consen 85 LIDRNIKWPRPSLQRLNWPREKRLSRGLSHAGDMPILAFQLPQLSVYEQSTPVALEKALFRLLPLADTGDGNCLMWGFHD 164 (774)
T ss_pred cccccccCCchHhhhhhHHHHHHHHHHhhccCCCccchhccchhhccccccchhhhhhhhhcccccccCCccchhhhhhh
Confidence 35666899999999999999999999976662100 00
Q ss_pred ------------------CCCcccCCcccccCCcCccccccCCCCCCCC
Q 019784 294 ------------------LKGWSCKFCTLDNSSLSERCLACGEWRYSNG 324 (336)
Q Consensus 294 ------------------~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~ 324 (336)
..+|.|-.||+.|++....|.+|++.+....
T Consensus 165 lvlqk~l~t~l~~~~~rw~~eW~~lik~ass~pr~~r~~~~~~~~~~e~ 213 (774)
T KOG4345|consen 165 LVLQKALYTGLCYGTERWNDEWTELIKLASSEPRMHRSGNGGTGGGVEI 213 (774)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHhhcccchhhhcccCCCCCCccc
Confidence 1349999999999999999999999887544
No 22
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=93.27 E-value=0.072 Score=47.38 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhhcC-------cCCCchhHHHHHHHH
Q 019784 85 YEQILDTMLHELCHNE-------YGPHNADFYKLWDEI 115 (336)
Q Consensus 85 ~~~i~~vllHELaH~~-------~~~H~~~F~~ll~~l 115 (336)
-+.|..|+.|||||.. +-+||.+|-.+|.++
T Consensus 58 ~~f~~~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV 95 (156)
T COG3091 58 EDFIEQVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQV 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHh
Confidence 3578999999999985 569999998887765
No 23
>PRK03982 heat shock protein HtpX; Provisional
Probab=90.53 E-value=0.46 Score=45.81 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=37.6
Q ss_pred HHHHHhhcCceeeeecccCCC--CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019784 34 VQPIMRKHKWKVRILSEFCPA--NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 34 v~pIM~~~~w~V~~L~Ef~P~--~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H 104 (336)
|..+.++.++....+.-+.-. |.=.+|.+.+++ .|.|---.- ..++-++|..||.|||.|++|++.
T Consensus 74 v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~-~V~vt~gLl----~~l~~~El~AVlAHElgHi~~~h~ 141 (288)
T PRK03982 74 VERLAERANIPKPKVAIVPTQTPNAFATGRDPKHA-VVAVTEGIL----NLLNEDELEGVIAHELTHIKNRDT 141 (288)
T ss_pred HHHHHHHcCCCCCeEEEEeCCCcceEEeccCCCCe-EEEeehHHH----hhCCHHHHHHHHHHHHHHHHcCCH
Confidence 344444555554444333111 333566655343 343322221 235779999999999999999864
No 24
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=89.87 E-value=0.27 Score=45.63 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---ceeeeecccCCCCCCceeeecCCC----cEEEEEecCCCCCCC-CCCHHHHHHHHH
Q 019784 22 DARQILEKVAKQVQPIMRKHK---WKVRILSEFCPANPSLLGINIGGG----AEVKLRLRRPNREWD-FFPYEQILDTML 93 (336)
Q Consensus 22 ~A~~~L~rlA~~v~pIM~~~~---w~V~~L~Ef~P~~~~llG~N~N~G----~~I~LRLR~~~~~~~-f~p~~~i~~vll 93 (336)
.|.++|+.....|..++-... -.|..+.=+. ...=|.-...| .+|.|.++...+... -..-..|..||.
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~---~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~ 101 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLIL---DDMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLY 101 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEE---ECCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHH
Confidence 566677777777777665421 0010000000 01123322335 799999887643211 112368999999
Q ss_pred hhhhhcCc-CCCchhHHHHHHHHHHHHHHHHH
Q 019784 94 HELCHNEY-GPHNADFYKLWDEIRKECDELMA 124 (336)
Q Consensus 94 HELaH~~~-~~H~~~F~~ll~~l~~e~~~l~~ 124 (336)
|||+|++. .+++..+.-|++.+.+ |-.|.+
T Consensus 102 HE~~H~~Q~~~~~~~P~~liEGIAD-yVRl~a 132 (205)
T PF04450_consen 102 HEMVHCWQWDGRGTAPGGLIEGIAD-YVRLKA 132 (205)
T ss_pred HHHHHHhhcCCCCCCChhheecHHH-HHHHHc
Confidence 99999997 4588899999988754 555654
No 25
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=89.31 E-value=1.1 Score=41.14 Aligned_cols=80 Identities=26% Similarity=0.307 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHH-HHccccCCC------------------CcccCCCcccCCCC
Q 019784 85 YEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDEL-MAKGITGTG------------------KGFDLPGRRLGGFS 145 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l-~~~G~~g~g------------------~gf~~~G~rLGG~~ 145 (336)
....+.=|.| ..|-.|..---++|+.|..-..+.+.- ...|+.+.| .++.+.|++|||.+
T Consensus 83 ~~t~lHELaH-~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~~gf~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~LgG~s 161 (186)
T PF08325_consen 83 LGTMLHELAH-NVHGPHDDKFWKLLDELRKECEELDAKGYTEGFWSSGRRLGGSSGQPSEERELRGNGLSGGGQRLGGGS 161 (186)
T ss_pred HHHHHHHHHh-cccCCccHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCCCCcccchhhhhhccccCCCCeeCCCCC
Confidence 3566788888 568889988888888887766666663 112222222 23567889999976
Q ss_pred CC----CCchHHHHHHHHHHHHhh
Q 019784 146 RQ----PPLSQLRQSALAAAENRA 165 (336)
Q Consensus 146 ~~----~~~~~~r~~a~~aaekr~ 165 (336)
.. ......|+.+.+||++|.
T Consensus 162 ~~~~~~~~~~~~Re~~a~AAerR~ 185 (186)
T PF08325_consen 162 SSRPRKAQPKSPREAAAAAAERRL 185 (186)
T ss_pred CCCCCcCCCcCHHHHHHHHHHhhc
Confidence 53 345567888999999985
No 26
>PRK03001 M48 family peptidase; Provisional
Probab=88.78 E-value=0.58 Score=44.98 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCceeeeecccCC--CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019784 30 VAKQVQPIMRKHKWKVRILSEFCP--ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 30 lA~~v~pIM~~~~w~V~~L~Ef~P--~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~ 103 (336)
|.+.|.-+.++.|+.+..+.-+-- .|.=..|.+.+++ .|-|---.- .-+.-++|..||.|||+|+++++
T Consensus 69 L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~-~Ivvt~gLl----~~l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLPMPKVYLINEDQPNAFATGRNPEHA-AVAATTGIL----RVLSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCCCCeEEEecCCCcceEEecCCCCCe-EEEecHHHH----hhCCHHHHHHHHHHHHHHHhCCC
Confidence 334445555666666665554421 1344567655444 344332221 13467999999999999999774
No 27
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=88.61 E-value=0.27 Score=30.86 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=13.9
Q ss_pred cccCCcccccCCcCccccccCCC
Q 019784 297 WSCKFCTLDNSSLSERCLACGEW 319 (336)
Q Consensus 297 W~C~~CT~~N~~~~~~C~~Cg~~ 319 (336)
+.|+.|...|...+..|..||++
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCcccccChhhCCC
Confidence 45666666666666666666653
No 28
>PRK04897 heat shock protein HtpX; Provisional
Probab=88.42 E-value=0.61 Score=45.33 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCceeeeecccCC--CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019784 30 VAKQVQPIMRKHKWKVRILSEFCP--ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 30 lA~~v~pIM~~~~w~V~~L~Ef~P--~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H 104 (336)
|.+.|..+.++.++.++.+..+-- .|.=..|.+.+++ .|.+---.- ..++-+++..||.|||+|+++++.
T Consensus 82 L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~-~v~vt~gLl----~~l~~~El~aVlAHElgHi~~~d~ 153 (298)
T PRK04897 82 LWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNA-AVAVTTGLL----AIMNREELEGVIGHEISHIRNYDI 153 (298)
T ss_pred HHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCc-EEEeehHHH----hhCCHHHHHHHHHHHHHHHhcCCH
Confidence 445566666777777777766521 1334556555433 454442111 235779999999999999997764
No 29
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=87.83 E-value=0.32 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=17.0
Q ss_pred cccCCcccccCC--cCccccccCCCCC
Q 019784 297 WSCKFCTLDNSS--LSERCLACGEWRY 321 (336)
Q Consensus 297 W~C~~CT~~N~~--~~~~C~~Cg~~R~ 321 (336)
|.|..|.+.-.. ..+.|..||.++.
T Consensus 2 ~~C~~CGy~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 2 YVCPVCGYIYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCCCCEECCCcCCCcCcCCCCcHH
Confidence 777777776443 3677888877653
No 30
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=0.77 Score=43.41 Aligned_cols=73 Identities=26% Similarity=0.222 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019784 26 ILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 26 ~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H 104 (336)
.+.++...+.+....+.|+|.....=.| |.=-+|.+.+.| +|-|---.- ..+.-++|..||.||++|+++++.
T Consensus 101 ~~~~v~~~a~~~~~~~~~~v~i~~~~~~-NAFa~g~~~~~~-~V~vt~gLl----~~l~~dEl~aVlaHElgHi~~rd~ 173 (302)
T COG0501 101 LLLKVAELARQAGIPHMPEVYILETPQP-NAFALGGGPKNG-RVVVTTGLL----DLLNDDELEAVLAHELGHIKNRHT 173 (302)
T ss_pred HHHHHHHHHHHCCCCCCCeeEEecCCCc-cceecCCCCCCe-eEEecHHHH----hhCCHHHHHHHHHHHHHHHhcccH
Confidence 4445666666666666788888874434 554556554333 565554442 257889999999999999999876
No 31
>PRK01265 heat shock protein HtpX; Provisional
Probab=86.73 E-value=1.3 Score=43.81 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCceeeeecccCC--CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019784 32 KQVQPIMRKHKWKVRILSEFCP--ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 32 ~~v~pIM~~~~w~V~~L~Ef~P--~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H 104 (336)
..|.-+.++.++.++.+..+.- .|.-..|.+..+ ..|.|---.- ..++-+.+..||.|||.|++|++=
T Consensus 87 ~~v~~la~~~g~~~p~vyv~~~~~~NAfa~G~~~~~-~~Ivvt~gLl----~~l~~~El~aVlAHElgHik~~d~ 156 (324)
T PRK01265 87 SIVAEVAKYNGIRVPKVYIADVPFPNAFAYGSPIAG-KRIAITLPLL----KILNRDEIKAVAGHELGHLKHRDV 156 (324)
T ss_pred HHHHHHHHHcCCCCCeEEEecCCCCCeEEeccCCCC-CEEEEehHHH----hhCCHHHHHHHHHHHHHHHHcccH
Confidence 3344444556666666655421 134455665433 4565543332 346889999999999999887653
No 32
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=86.55 E-value=0.91 Score=36.10 Aligned_cols=61 Identities=21% Similarity=0.108 Sum_probs=35.1
Q ss_pred CCceeeecCC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 019784 56 PSLLGINIGG--GAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMA 124 (336)
Q Consensus 56 ~~llG~N~N~--G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~ 124 (336)
..+.|..... ...|.|+-+. +...-..+++|||.|.....+...+.........+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~I~in~~~--------~~~~~~f~laHELgH~~~~~~~~~~~~~~~~~~~~~~E~~A 78 (122)
T PF06114_consen 16 KDLGGFSIPKENNPIIFINSNL--------SPERQRFTLAHELGHILLHHGDETFNYYLNYFFNERQEREA 78 (122)
T ss_dssp --EEEETT----TTEEEEESSS---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--THHHHHHH
T ss_pred CCcCEEEEecCcCCEEEECCCC--------CHHHHHHHHHHHHHHHHhhhccccchhhccccchhhHHHHH
Confidence 3444554443 5677777653 55677889999999999988876654444444444444443
No 33
>KOG3931 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=1.2 Score=44.69 Aligned_cols=65 Identities=26% Similarity=0.395 Sum_probs=50.4
Q ss_pred eeeecC--CCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcC---------cCCCchhHHHHHHHHH-----------
Q 019784 59 LGINIG--GGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNE---------YGPHNADFYKLWDEIR----------- 116 (336)
Q Consensus 59 lG~N~N--~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~---------~~~H~~~F~~ll~~l~----------- 116 (336)
.|+|.- .|.-..|||-.| ..-.+|...++.|||||+-|-. .+.|+++|-+.+..+.
T Consensus 76 AGICsyeg~gg~csIRLSeP--LLkLRPRkDLVETLLHEMIHAYlFV~n~~~dr~GHGP~F~~hMhrIN~~~GtNITvYH 153 (484)
T KOG3931|consen 76 AGICSYEGKGGMCSIRLSEP--LLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGTNITVYH 153 (484)
T ss_pred cceeeeccccceEEEEecch--hhccCchHHHHHHHHHHHHHHheeEecccccCCCCChHHHHHHHHHhhccCceeEEEe
Confidence 355543 466778888775 4568999999999999999953 3579999999988764
Q ss_pred ------HHHHHHHHc
Q 019784 117 ------KECDELMAK 125 (336)
Q Consensus 117 ------~e~~~l~~~ 125 (336)
++|+..+|+
T Consensus 154 tFHDEV~~Yr~HwWR 168 (484)
T KOG3931|consen 154 TFHDEVDEYRRHWWR 168 (484)
T ss_pred echHHHHHHHhhhhh
Confidence 578888886
No 34
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=86.18 E-value=0.45 Score=29.86 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred CccCCcccccccccCccccccCCC
Q 019784 263 MWQCNMCTLLNQPLALTCEACGTQ 286 (336)
Q Consensus 263 ~W~C~~CT~~N~~~a~~C~aC~~~ 286 (336)
.+.|+.|...|+..+..|..||++
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCCcccCCcCCcccccChhhCCC
Confidence 468999999999999999999975
No 35
>PRK03072 heat shock protein HtpX; Provisional
Probab=85.97 E-value=1.4 Score=42.77 Aligned_cols=70 Identities=17% Similarity=0.037 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcCceeeeecccCCC--CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019784 30 VAKQVQPIMRKHKWKVRILSEFCPA--NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 30 lA~~v~pIM~~~~w~V~~L~Ef~P~--~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H 104 (336)
|.+.|.-+.++-|+.++.+..+--. |.=..|.+.+ +..|.+--.. ...++-+.|..||.|||+|+++++-
T Consensus 72 L~~~v~~la~~~g~p~p~vyv~~~~~~NAFa~G~~~~-~~~v~vt~gL----l~~l~~~El~aVlAHElgHi~~~d~ 143 (288)
T PRK03072 72 MYRIVRELSTAARQPMPRLYISPTAAPNAFATGRNPR-NAAVCCTEGI----LQILNERELRGVLGHELSHVYNRDI 143 (288)
T ss_pred HHHHHHHHHHHcCCCCCCEEEecCCCCceEEecCCCC-CcEEEecHHH----HHhCCHHHHHHHHHHHHHHHhcCCH
Confidence 3445556666777777777665322 3334453331 2123322221 1346789999999999999998764
No 36
>PRK02870 heat shock protein HtpX; Provisional
Probab=85.13 E-value=2.6 Score=41.95 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019784 55 NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 55 ~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~ 103 (336)
|.=.+|.+.+.+ .|.+-=-.- ..++.+.+..||.|||+|+.|++
T Consensus 145 NAFA~G~~~~~~-~Ivvt~GLL----~~L~~dEL~aVlAHELgHik~~d 188 (336)
T PRK02870 145 NAFASGYSEKSA-MVAITTGLL----EKLDRDELQAVMAHELSHIRHGD 188 (336)
T ss_pred ceEEecCCCCCc-EEEEehHHh----hhCCHHHHHHHHHHHHHHHHccc
Confidence 555667665433 555532221 24578999999999999997644
No 37
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=84.66 E-value=0.55 Score=28.83 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=14.0
Q ss_pred cCCcccccCCcCccccccCCC
Q 019784 299 CKFCTLDNSSLSERCLACGEW 319 (336)
Q Consensus 299 C~~CT~~N~~~~~~C~~Cg~~ 319 (336)
|+.|...+...+..|..||++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 666666666666666666654
No 38
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=83.64 E-value=0.9 Score=36.43 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHhhhhhcCcCCCc
Q 019784 83 FPYEQILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 83 ~p~~~i~~vllHELaH~~~~~H~ 105 (336)
.+.+.+..|+.|||+|..++...
T Consensus 20 ~~~~~~~~~l~HE~~H~~~~~~~ 42 (128)
T PF13485_consen 20 SDEDWLDRVLAHELAHQWFGNYF 42 (128)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc
Confidence 35677789999999999876553
No 39
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=82.85 E-value=1.5 Score=42.02 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHhhhhhcCcCCCchhH
Q 019784 82 FFPYEQILDTMLHELCHNEYGPHNADF 108 (336)
Q Consensus 82 f~p~~~i~~vllHELaH~~~~~H~~~F 108 (336)
-+..+++..+++|||+|+.+++.=..|
T Consensus 190 ~~~~~el~~il~HEl~Hikr~D~~~~~ 216 (299)
T PF05569_consen 190 DLSEEELRAILLHELAHIKRRDLLWKL 216 (299)
T ss_pred ccCHHHHHHHHHHHHHHHHCCChHHHH
Confidence 356688999999999999988764333
No 40
>PRK01345 heat shock protein HtpX; Provisional
Probab=82.13 E-value=1.8 Score=42.55 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=37.3
Q ss_pred HHHHHhhcCceeeeecccC-C-CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019784 34 VQPIMRKHKWKVRILSEFC-P-ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 34 v~pIM~~~~w~V~~L~Ef~-P-~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~ 103 (336)
|.-+.++.++.+..+.-+. + .|.=..|.+.+++ .|.+---.- ..++-++|..||.|||.|+++++
T Consensus 73 v~~La~~agi~~p~v~vid~~~~NAFa~G~~~~~~-~V~vt~gLL----~~L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 73 VRDLARRAGLPMPKVYIIDNPQPNAFATGRNPENA-AVAATTGLL----QRLSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHcCCCCCcEEEEcCCCcceEEecCCCCCe-EEEechHHH----hhCCHHHHHHHHHHHHHHHHcCC
Confidence 3333445555555444431 1 1444556654333 555542221 23577999999999999999754
No 41
>PRK05457 heat shock protein HtpX; Provisional
Probab=81.88 E-value=2 Score=41.56 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=35.7
Q ss_pred HhhcCceeeeecccCC---CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019784 38 MRKHKWKVRILSEFCP---ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 38 M~~~~w~V~~L~Ef~P---~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~ 103 (336)
-++.|+.++.+.-+ | .|.-..|.+.+++ .|.+-.-.- ..++-++|..|+.|||.|+.+++
T Consensus 87 a~~~g~p~p~v~v~-~~~~~NAfa~G~~~~~~-~V~vt~gLl----~~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 87 ARQAGIGMPEVAIY-HSPEINAFATGASKNNS-LVAVSTGLL----QNMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHhCCCCCCCEEEE-eCCCceEEEecCCCCCe-EEEeehHHh----hhCCHHHHHHHHHHHHHHHHcCC
Confidence 35556655444322 2 1444566665443 344432111 23678999999999999999875
No 42
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=81.61 E-value=0.82 Score=30.59 Aligned_cols=26 Identities=27% Similarity=0.701 Sum_probs=17.8
Q ss_pred CcccCCcccccCCc--CccccccCCCCC
Q 019784 296 GWSCKFCTLDNSSL--SERCLACGEWRY 321 (336)
Q Consensus 296 ~W~C~~CT~~N~~~--~~~C~~Cg~~R~ 321 (336)
.|.|..|.+.-... -..|..||.++.
T Consensus 2 ~~~C~~CG~i~~g~~~p~~CP~Cg~~~~ 29 (34)
T cd00729 2 VWVCPVCGYIHEGEEAPEKCPICGAPKE 29 (34)
T ss_pred eEECCCCCCEeECCcCCCcCcCCCCchH
Confidence 48888888774443 468888887653
No 43
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=81.33 E-value=3.5 Score=37.52 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCC--------CcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhh
Q 019784 27 LEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGG--------GAEVKLRLRRPNREWDFFPYEQILDTMLHELCH 98 (336)
Q Consensus 27 L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~--------G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH 98 (336)
+++.-..++-++...+..|. ++|.++.-..+..+. ..+|.|-| .+. -...+.|..++.||+-|
T Consensus 5 i~~~~~~~~~~~~~~~i~v~----i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~----~~~~~~l~~~iaHE~hH 75 (195)
T PF10026_consen 5 IEEALEKSIELLPGPDIPVF----IFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPN----DYSLEELPALIAHEYHH 75 (195)
T ss_pred HHHHHHHHHHHcCCCCCCEE----EEeccCCCcccccccCcccccCCCCEEEEEe-cCC----cccHHHHHHHHHHHHHH
Confidence 34444445556666666666 445544332222111 34777776 432 23557999999999999
Q ss_pred cCcCCCc---hhHHHHHHHHHHH
Q 019784 99 NEYGPHN---ADFYKLWDEIRKE 118 (336)
Q Consensus 99 ~~~~~H~---~~F~~ll~~l~~e 118 (336)
++...+- ..=..|++.+.-|
T Consensus 76 ~~r~~~~~~~~~~~TLld~~I~E 98 (195)
T PF10026_consen 76 NCRYEQIGWDPEDTTLLDSLIME 98 (195)
T ss_pred HHHHhccCCCCCCCCHHHHHHHh
Confidence 9865432 2345677776655
No 44
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=81.24 E-value=1.5 Score=50.22 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=42.1
Q ss_pred CccCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCc---CccccccCCCCCCCC
Q 019784 263 MWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSL---SERCLACGEWRYSNG 324 (336)
Q Consensus 263 ~W~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~---~~~C~~Cg~~R~~s~ 324 (336)
.-.|+.|.-.... ..|..|++... ..+.|+.|....... +..|.-|+++..+..
T Consensus 667 ~rkCPkCG~~t~~--~fCP~CGs~te------~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 667 RRRCPSCGTETYE--NRCPDCGTHTE------PVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EEECCCCCCcccc--ccCcccCCcCC------CceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 3789999987755 49999997742 257999999976554 779999998876543
No 45
>PRK02391 heat shock protein HtpX; Provisional
Probab=80.52 E-value=2.8 Score=40.89 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=38.0
Q ss_pred HHHHHHhhcCceeeeecccC-C-CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019784 33 QVQPIMRKHKWKVRILSEFC-P-ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 33 ~v~pIM~~~~w~V~~L~Ef~-P-~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H 104 (336)
.|..+.++.++.++.+..+- + .|.=..|.+.+++ .|.+---. ...+.-+++..||.|||+|+.+++-
T Consensus 81 ~v~~la~~~~~~~p~v~v~~~~~~NAfa~G~~~~~~-~V~vt~gL----l~~L~~~El~aVlaHElgHi~~~di 149 (296)
T PRK02391 81 MVERLCALADLPKPRVAVADSDVPNAFATGRSPKNA-VVCVTTGL----MRRLDPDELEAVLAHELSHVKNRDV 149 (296)
T ss_pred HHHHHHHHcCCCCCcEEEEeCCCCceEEecCCCCCc-EEEecHHH----HhhCCHHHHHHHHHHHHHHHHcCCH
Confidence 33444455565544444331 1 1444556655433 44442111 1245779999999999999998863
No 46
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=80.50 E-value=0.43 Score=48.58 Aligned_cols=25 Identities=40% Similarity=0.844 Sum_probs=22.8
Q ss_pred CcccCCcccccCCcCccccccCCCC
Q 019784 296 GWSCKFCTLDNSSLSERCLACGEWR 320 (336)
Q Consensus 296 ~W~C~~CT~~N~~~~~~C~~Cg~~R 320 (336)
.|.|+.|||.|+..|-+|+||...+
T Consensus 546 ~we~~~~~~i~~~~~~t~~m~~~~~ 570 (571)
T COG5100 546 RWECKMCTFINEKNSCTCEMCNSTR 570 (571)
T ss_pred HHHHHHHHHhcccCceEEEeecccC
Confidence 4999999999999999999998765
No 47
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=80.19 E-value=1.3 Score=41.72 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHhhhhhcCcCCCchh
Q 019784 82 FFPYEQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 82 f~p~~~i~~vllHELaH~~~~~H~~~ 107 (336)
..|...+..||.|||-|+.-++||..
T Consensus 161 ~~~~~~~a~t~AHElGHnlGm~HD~~ 186 (244)
T cd04270 161 RVPTKESDLVTAHELGHNFGSPHDPD 186 (244)
T ss_pred ccchhHHHHHHHHHHHHhcCCCCCCC
Confidence 45667788999999999999999864
No 48
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=77.53 E-value=1.4 Score=27.09 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.7
Q ss_pred cCCcccccccccCccccccCCC
Q 019784 265 QCNMCTLLNQPLALTCEACGTQ 286 (336)
Q Consensus 265 ~C~~CT~~N~~~a~~C~aC~~~ 286 (336)
.|+.|.-.|+..+..|..||++
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 3899999999999999999975
No 49
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=77.31 E-value=1.6 Score=39.17 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=27.7
Q ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchh
Q 019784 66 GAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 66 G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~ 107 (336)
+..|.|....- ..++-+++..||.|||+|+.+++.-..
T Consensus 71 ~~~I~v~~~ll----~~~~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 71 RKRIVVTSGLL----ESLSEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp --EEEEEHHHH----HHSSHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred CcEEEEeChhh----hcccHHHHHHHHHHHHHHHHcCCcchH
Confidence 34566665543 357789999999999999998877555
No 50
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=76.65 E-value=1.4 Score=43.73 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019784 78 REWDFFPYEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 78 ~~~~f~p~~~i~~vllHELaH~~~~~ 103 (336)
|-..-++-+.+.|+++|||+|+.+++
T Consensus 180 d~~~r~~~ee~~yIilHEl~Hlk~gD 205 (337)
T COG4219 180 DFVERLTDEELKYIILHELSHLKRGD 205 (337)
T ss_pred HHHhhcCHHhhhhhHhHHHhhhhccc
Confidence 33455778899999999999999876
No 51
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=74.69 E-value=0.73 Score=47.00 Aligned_cols=25 Identities=44% Similarity=1.147 Sum_probs=23.1
Q ss_pred CccCCcccccccccCccccccCCCC
Q 019784 263 MWQCNMCTLLNQPLALTCEACGTQR 287 (336)
Q Consensus 263 ~W~C~~CT~~N~~~a~~C~aC~~~r 287 (336)
.|.|..|||+|.....+|+||...+
T Consensus 546 ~we~~~~~~i~~~~~~t~~m~~~~~ 570 (571)
T COG5100 546 RWECKMCTFINEKNSCTCEMCNSTR 570 (571)
T ss_pred HHHHHHHHHhcccCceEEEeecccC
Confidence 4999999999999999999998765
No 52
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=74.68 E-value=1.9 Score=31.43 Aligned_cols=9 Identities=33% Similarity=1.302 Sum_probs=4.6
Q ss_pred CCcccCCcc
Q 019784 295 KGWSCKFCT 303 (336)
Q Consensus 295 ~~W~C~~CT 303 (336)
..|.|+.|.
T Consensus 33 ~~w~CP~C~ 41 (50)
T cd00730 33 DDWVCPVCG 41 (50)
T ss_pred CCCCCCCCC
Confidence 345555554
No 53
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=74.06 E-value=4.8 Score=34.44 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=32.1
Q ss_pred CCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcC------CCc--hhHHHHHHH
Q 019784 64 GGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYG------PHN--ADFYKLWDE 114 (336)
Q Consensus 64 N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~------~H~--~~F~~ll~~ 114 (336)
|-+-.|.|--.. .--+|-+.=+.||+|||.|+... .|+ .+||....-
T Consensus 60 nP~YviEl~sek----F~rLs~~ekvKviiHEllHIP~tfSGgLRaHg~~vn~rrv~kL 114 (133)
T COG4900 60 NPVYVIELLSEK----FKRLSCAEKVKVIIHELLHIPATFSGGLRAHGPLVNFRRVYKL 114 (133)
T ss_pred CCeeeeeeehhh----cCCCChHHHHHHHHHHHhcCcccccCccccCCcchhHHHHHHH
Confidence 456666653221 12467888899999999999853 788 778765543
No 54
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=72.11 E-value=2 Score=38.89 Aligned_cols=11 Identities=27% Similarity=1.114 Sum_probs=8.3
Q ss_pred CccCCcccccc
Q 019784 263 MWQCNMCTLLN 273 (336)
Q Consensus 263 ~W~C~~CT~~N 273 (336)
.|.|+.|.|+=
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 68888887753
No 55
>KOG3854 consensus SPRT-like metalloprotease [Function unknown]
Probab=71.80 E-value=2.9 Score=43.48 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCceeeecC------CCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhc-------CcCCCchhHHHH
Q 019784 56 PSLLGINIG------GGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHN-------EYGPHNADFYKL 111 (336)
Q Consensus 56 ~~llG~N~N------~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~-------~~~~H~~~F~~l 111 (336)
++.+|.+.| +-.+|.|-+.- .---+.|..||+|||||. .+..|++.|-..
T Consensus 319 rktag~cl~~~~~~kr~A~IeLs~kV------~tTAERir~TLiHEmCHaAaWv~dr~e~gHGd~wKrW 381 (505)
T KOG3854|consen 319 RKTAGCCLNGDAHGKRYAKIELSDKV------CTTAERIRDTLIHEMCHAAAWVFDREELGHGDNWKRW 381 (505)
T ss_pred hhcccccccchhccCceeEEEehhhh------hhHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHH
Confidence 455666655 34567776554 345688999999999995 277898766443
No 56
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=70.58 E-value=2.5 Score=37.36 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHHhhhhhcC
Q 019784 78 REWDFFPYEQILDTMLHELCHNE 100 (336)
Q Consensus 78 ~~~~f~p~~~i~~vllHELaH~~ 100 (336)
+...|.||..-++|+.|||+|=|
T Consensus 125 ~~~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 125 DGQIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp -SSSBS-GGG-HHHHHHHHHHHH
T ss_pred CCcccccCccccceeeecccccc
Confidence 34479999999999999999954
No 57
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=69.78 E-value=1.9 Score=40.43 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.8
Q ss_pred HHHHhhhhhcCcCCCch
Q 019784 90 DTMLHELCHNEYGPHNA 106 (336)
Q Consensus 90 ~vllHELaH~~~~~H~~ 106 (336)
.||.|||.|+.-++||.
T Consensus 147 ~t~AHElGHnLGm~HD~ 163 (228)
T cd04271 147 QVFAHEIGHTFGAVHDC 163 (228)
T ss_pred eehhhhhhhhcCCCCCC
Confidence 69999999999999984
No 58
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=69.17 E-value=2.5 Score=31.24 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=21.6
Q ss_pred ccccccCccccccCCCCcCC---CCCCCCcccCCccccc
Q 019784 271 LLNQPLALTCEACGTQRNKS---VGNLKGWSCKFCTLDN 306 (336)
Q Consensus 271 ~~N~~~a~~C~aC~~~rp~~---~~~~~~W~C~~CT~~N 306 (336)
..+...++.|..|..-.... ....-.|.|+.|.+.|
T Consensus 16 ~~~~r~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~~N 54 (54)
T PF10058_consen 16 SPSNRYALICSKCFSHNGLAPKEEFEEIQYRCPYCGALN 54 (54)
T ss_pred cccCceeEECcccchhhcccccccCCceEEEcCCCCCcC
Confidence 34445556666665443221 2334589999999887
No 59
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=69.08 E-value=7.4 Score=40.97 Aligned_cols=61 Identities=21% Similarity=0.477 Sum_probs=41.5
Q ss_pred CCCCCCCCc-cCCcccccccccC---ccccccCCCCcCC---------------CCCCCCcccCCcccccCCcCcccccc
Q 019784 256 KAVDVGQMW-QCNMCTLLNQPLA---LTCEACGTQRNKS---------------VGNLKGWSCKFCTLDNSSLSERCLAC 316 (336)
Q Consensus 256 ~~~~~~~~W-~C~~CT~~N~~~a---~~C~aC~~~rp~~---------------~~~~~~W~C~~CT~~N~~~~~~C~~C 316 (336)
..+.....| .|-+|.-.|...+ +.|..||..-... +-....|-|..|.+-=.. ..|+.|
T Consensus 111 ~~~Sapkk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~--P~CElC 188 (707)
T KOG0957|consen 111 RTPSAPKKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL--PHCELC 188 (707)
T ss_pred cccCccccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC--CccccC
Confidence 344556789 9999998885543 6799998653211 122357999999875443 678888
Q ss_pred CC
Q 019784 317 GE 318 (336)
Q Consensus 317 g~ 318 (336)
-.
T Consensus 189 Pn 190 (707)
T KOG0957|consen 189 PN 190 (707)
T ss_pred CC
Confidence 54
No 60
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=66.26 E-value=3.7 Score=32.41 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=19.4
Q ss_pred CCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcC
Q 019784 65 GGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYG 102 (336)
Q Consensus 65 ~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~ 102 (336)
.|..|.|+--.. ++ ....=..+|.|||+|++.-
T Consensus 43 ~G~~I~f~~g~~-~~----~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 43 VGNDIYFAPGKY-NP----DSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred ECCEEEEcCCCc-CC----CCCCcchhHhHHHHHHHhh
Confidence 388898843210 00 0111247899999998754
No 61
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=66.25 E-value=17 Score=40.80 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.1
Q ss_pred CHHHHHHHHHhhhhhcCcCCC
Q 019784 84 PYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 84 p~~~i~~vllHELaH~~~~~H 104 (336)
.+..|..|+.||++|++.||-
T Consensus 279 ~~~~i~~VIaHElaHqWfGNl 299 (863)
T TIGR02414 279 DYERIESVIAHEYFHNWTGNR 299 (863)
T ss_pred HHHHHHHHHHHHHHHHHhcce
Confidence 456789999999999999964
No 62
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=66.10 E-value=3 Score=41.72 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=46.9
Q ss_pred CCCCCccCC--cccccccccCccccccCCCCcCCC-------------------CCCCCcccCCcccccCCcCccccccC
Q 019784 259 DVGQMWQCN--MCTLLNQPLALTCEACGTQRNKSV-------------------GNLKGWSCKFCTLDNSSLSERCLACG 317 (336)
Q Consensus 259 ~~~~~W~C~--~CT~~N~~~a~~C~aC~~~rp~~~-------------------~~~~~W~C~~CT~~N~~~~~~C~~Cg 317 (336)
...-.|.|+ +|.-.|...+++|..|...++... .....|.|+.|+.+|+.....|- .
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g--n 144 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG--N 144 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC--C
Confidence 344679998 888899999999999998887632 12457999999999988887776 4
Q ss_pred CCCC
Q 019784 318 EWRY 321 (336)
Q Consensus 318 ~~R~ 321 (336)
+++.
T Consensus 145 ~ikv 148 (351)
T KOG1995|consen 145 TIKV 148 (351)
T ss_pred Cchh
Confidence 4443
No 63
>PF12773 DZR: Double zinc ribbon
Probab=63.01 E-value=5.7 Score=27.97 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.2
Q ss_pred CCCCccCCcccccccccCccccccC
Q 019784 260 VGQMWQCNMCTLLNQPLALTCEACG 284 (336)
Q Consensus 260 ~~~~W~C~~CT~~N~~~a~~C~aC~ 284 (336)
....+.|+.|...|...+..|..||
T Consensus 26 ~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 26 DQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred cCCCCCCcCCcCCCcCCcCccCccc
Confidence 3457899999999999999999886
No 64
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=63.01 E-value=6.6 Score=37.58 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=36.4
Q ss_pred CCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC----------CchhHHHHHHHHH
Q 019784 56 PSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP----------HNADFYKLWDEIR 116 (336)
Q Consensus 56 ~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~----------H~~~F~~ll~~l~ 116 (336)
..+...-++ |..|.++-..- .-++.+.+..+++||+-|++..+ .+...|.+=-.+.
T Consensus 33 ~~~~t~~tD-g~~l~~nP~~~----~~l~~~~~~~~l~HevlH~~~~H~~r~~~~~~~~d~~~wn~A~Di~ 98 (292)
T PF13203_consen 33 DGIPTAATD-GRRLYYNPEFL----ESLSPEERVGLLLHEVLHCLLRHPWRRGGLRKRRDPELWNLACDIA 98 (292)
T ss_pred CCCceeeEc-CcEEEECcHHH----hcCCHHHHHHHHHHHHHHHHccchhhhccccccccHHHHHHHhHHH
Confidence 444444444 44787776663 34567889999999999998764 3555555544443
No 65
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=61.44 E-value=4.3 Score=37.31 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=17.1
Q ss_pred HHHHHhhhhhcCcCCCchh
Q 019784 89 LDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 89 ~~vllHELaH~~~~~H~~~ 107 (336)
..||.|||.|+.-++||..
T Consensus 146 ~~~~AHElGH~lG~~HD~~ 164 (220)
T cd04272 146 VYTMTHELAHLLGAPHDGS 164 (220)
T ss_pred HHHHHHHHHHHhCCCCCCC
Confidence 6999999999999999743
No 66
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=60.14 E-value=10 Score=34.44 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=24.0
Q ss_pred ceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcC
Q 019784 58 LLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNE 100 (336)
Q Consensus 58 llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~ 100 (336)
..|-..-....|.|---. +.....+..||.|||.|..
T Consensus 47 ~~Ggf~p~~~~I~lC~N~------~~~~~~l~~~l~HELIHay 83 (173)
T PF09768_consen 47 VSGGFDPSKKGIVLCQNR------IRSQGHLEDTLTHELIHAY 83 (173)
T ss_pred CcCCccCCCCCEEEeeCC------CCCHHHHHHHHHHHHHHHH
Confidence 444432224446554333 5677899999999999975
No 67
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=59.46 E-value=8.8 Score=36.04 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCch
Q 019784 65 GGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNA 106 (336)
Q Consensus 65 ~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~ 106 (336)
.+..|.| .- ..-.....+..||.|||=|++-.-|..
T Consensus 116 P~~~I~I-~~-----~~~~~~~~~~hvi~HEiGH~IGfRHTD 151 (211)
T PF12388_consen 116 PYKFIQI-YG-----LSNYSVNVIEHVITHEIGHCIGFRHTD 151 (211)
T ss_pred CCceEEE-Ee-----cCCCchhHHHHHHHHHhhhhccccccC
Confidence 3557777 21 134577889999999999999999964
No 68
>PF15639 Tox-MPTase3: Metallopeptidase toxin 3
Probab=58.78 E-value=3.3 Score=36.06 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCCCCCCC-------HHHHHHHHHhhhhhc
Q 019784 65 GGAEVKLRLRRPNREWDFFP-------YEQILDTMLHELCHN 99 (336)
Q Consensus 65 ~G~~I~LRLR~~~~~~~f~p-------~~~i~~vllHELaH~ 99 (336)
++++|.|+-....+. .-.| +-.|..|+||||.|-
T Consensus 71 ~~~~i~I~~~lV~~~-Ek~~~~~r~~~~~~v~~TlLHEliHw 111 (135)
T PF15639_consen 71 GSQVIRIDGDLVNMF-EKGPGERRAGNVYLVGSTLLHELIHW 111 (135)
T ss_pred CCcEEEeeHHHhhhh-hcCCcccccceEEEeehHHHHHHHHh
Confidence 578888776665432 1222 335778999999994
No 69
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=58.69 E-value=4.8 Score=35.84 Aligned_cols=22 Identities=36% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhhcCcCCCchh
Q 019784 86 EQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 86 ~~i~~vllHELaH~~~~~H~~~ 107 (336)
.....||.|||.|+.-..||..
T Consensus 131 ~~~~~~~aHElGH~lG~~HD~~ 152 (192)
T cd04267 131 LLTALTMAHELGHNLGAEHDGG 152 (192)
T ss_pred eeehhhhhhhHHhhcCCcCCCC
Confidence 3456799999999999999865
No 70
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=58.65 E-value=6 Score=35.21 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=44.7
Q ss_pred cceEEEecCCCCC---------HHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCC-------CcEEE
Q 019784 7 NKVWEVKALKKIG---------EDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGG-------GAEVK 70 (336)
Q Consensus 7 ~~v~~i~~L~~p~---------~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~-------G~~I~ 70 (336)
..|..|.....++ ...+.++|++....+...-....-.+..|--....... ||+-+-. +.-+.
T Consensus 48 ~~i~~i~i~~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~~~~~~~dl~~l~t~~d~~~g-lGlA~~g~~~~~~~~~~~~ 126 (196)
T PF13688_consen 48 FQISGITIWTSSDPYTNNVSNSNIDAEDTLQDFNNDFSSWRDSSYYDLAHLFTGRDFSGG-LGLAYVGSSCSNTSGGICS 126 (196)
T ss_dssp EEEEEEEE--S-B---TT-TSSS--HHHHHHHH--HHHTHHHHTTSSEEEEEE----GGG-EEEESSSSSSTT-SSSSS-
T ss_pred EEEEEEEEecCCCCCcccccccccCHHHHHHHHhhhhhhccCCCCCCEEEEEecccCCCC-ceeEeccccCcCCccceec
Confidence 3456666666222 25778888888644554444444456666544322223 7774322 11222
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCch
Q 019784 71 LRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNA 106 (336)
Q Consensus 71 LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~ 106 (336)
.+.... .....+...-..|+.|||.|+.-.+||.
T Consensus 127 ~~~~~~--~~~~~~~~~~~~~~AHEiGH~lGa~HD~ 160 (196)
T PF13688_consen 127 SSVSGS--YGQVPPTYNGAITFAHEIGHNLGAPHDG 160 (196)
T ss_dssp -E-EEE--TTEE--HHHHHHHHHHHHHHHTT-----
T ss_pred cCcccc--cceECCCCceehhhHHhHHHhcCCCCCC
Confidence 221111 1123567888899999999999999974
No 71
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=58.46 E-value=25 Score=32.01 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeeeecc--cCCCCCCc-eeeecCCC--cEE-EEEecCCCC---CCCCCCHHHHHH
Q 019784 20 EDDARQILEKVAKQVQPIMRKHKWKVRILSE--FCPANPSL-LGINIGGG--AEV-KLRLRRPNR---EWDFFPYEQILD 90 (336)
Q Consensus 20 ~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~E--f~P~~~~l-lG~N~N~G--~~I-~LRLR~~~~---~~~f~p~~~i~~ 90 (336)
.-.|..+|+.|..... .....|--+.. +|+...++ .|+..-.+ ..| ..||+.... +..-+-.+.+..
T Consensus 52 Q~~a~~iL~~l~~~~~----~~~~~vl~vt~~DLy~~~~nfvfG~a~~~~~~aVvS~~Rl~~~~~~~~~~~~l~~~R~~k 127 (179)
T PRK13267 52 QYRAEKFLPLLSRIGR----FNGDKNIGITDCDLYYRGLNFVFGLAYPNLRGAVISTYRLRPEFYGNKPDSELFEERVRK 127 (179)
T ss_pred eecHHHHHHHHHhhCC----CCCceEEEEEccccCCCCCCceeEEeecCCCEEEEEccccChhhccccchHHHHHHHHHH
Confidence 3456667766654432 24455555544 66655444 57765332 222 334433210 000123567778
Q ss_pred HHHhhhhhcCcCCCc
Q 019784 91 TMLHELCHNEYGPHN 105 (336)
Q Consensus 91 vllHELaH~~~~~H~ 105 (336)
+++|||-|+.-..|-
T Consensus 128 ~~~HElGH~lGL~HC 142 (179)
T PRK13267 128 EVTHELGHTLGLEHC 142 (179)
T ss_pred HHHHHHHHHcCCccC
Confidence 899999999999994
No 72
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=57.72 E-value=4.2 Score=29.31 Aligned_cols=10 Identities=30% Similarity=1.096 Sum_probs=4.0
Q ss_pred CCCcccCCcc
Q 019784 294 LKGWSCKFCT 303 (336)
Q Consensus 294 ~~~W~C~~CT 303 (336)
+..|.|+.|.
T Consensus 32 p~~w~CP~C~ 41 (47)
T PF00301_consen 32 PDDWVCPVCG 41 (47)
T ss_dssp -TT-B-TTTS
T ss_pred CCCCcCcCCC
Confidence 3456666654
No 73
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=57.07 E-value=6.5 Score=43.77 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHhhhhhcCcCCC
Q 019784 82 FFPYEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 82 f~p~~~i~~vllHELaH~~~~~H 104 (336)
-..|+.|..|++|||+|++.||-
T Consensus 301 ~~~~~~~~~viaHElaHqWfGnl 323 (859)
T COG0308 301 DSDYENVEEVIAHELAHQWFGNL 323 (859)
T ss_pred hHHHHHHHHHHHHHHhhhcccce
Confidence 34558888999999999999986
No 74
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=56.97 E-value=4.2 Score=33.39 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=11.7
Q ss_pred HHHHhhhhhcCcCCCc
Q 019784 90 DTMLHELCHNEYGPHN 105 (336)
Q Consensus 90 ~vllHELaH~~~~~H~ 105 (336)
.|+.|||-|+.-.+||
T Consensus 109 ~~~~HEiGH~lGl~Hd 124 (124)
T PF13582_consen 109 DTFAHEIGHNLGLNHD 124 (124)
T ss_dssp THHHHHHHHHTT----
T ss_pred eEeeehhhHhcCCCCC
Confidence 9999999999999996
No 75
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=56.75 E-value=7.9 Score=34.56 Aligned_cols=22 Identities=36% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhhcCcCCCchh
Q 019784 86 EQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 86 ~~i~~vllHELaH~~~~~H~~~ 107 (336)
.....++.|||.|+.-++||..
T Consensus 129 ~~~a~~~AHElGH~lG~~HD~~ 150 (194)
T cd04269 129 LLFAVTMAHELGHNLGMEHDDG 150 (194)
T ss_pred HHHHHHHHHHHHhhcCCCcCCC
Confidence 4557899999999999999876
No 76
>PRK14015 pepN aminopeptidase N; Provisional
Probab=56.48 E-value=23 Score=39.76 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhhhcCcCCC
Q 019784 85 YEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H 104 (336)
+..+..|+.|||+|.++||=
T Consensus 293 ~~~i~~vIaHElaHqWFGNl 312 (875)
T PRK14015 293 YERIESVIAHEYFHNWTGNR 312 (875)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 45688999999999999963
No 77
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=56.36 E-value=3.4 Score=40.80 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhhhhhcC-cCC-CchhHHHHHHHHHHHHHHHHHcccc
Q 019784 83 FPYEQILDTMLHELCHNE-YGP-HNADFYKLWDEIRKECDELMAKGIT 128 (336)
Q Consensus 83 ~p~~~i~~vllHELaH~~-~~~-H~~~F~~ll~~l~~e~~~l~~~G~~ 128 (336)
+|.-.+=-|++|||||-. ++. =.++|++.|.-...+=-.++..||.
T Consensus 191 ~p~~~~P~T~~HElAHq~G~a~E~EANFiayLac~~s~d~~frYSgy~ 238 (318)
T PF12725_consen 191 LPPYSLPFTICHELAHQLGFASEDEANFIAYLACINSPDPYFRYSGYL 238 (318)
T ss_pred CCcccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCChheeHHHHH
Confidence 344445579999999988 333 3388999998777666666666655
No 78
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=55.70 E-value=18 Score=35.52 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhhhhhcC-cCCCchhHHHHHHHHHHHHHHHHHccccCCC
Q 019784 84 PYEQILDTMLHELCHNE-YGPHNADFYKLWDEIRKECDELMAKGITGTG 131 (336)
Q Consensus 84 p~~~i~~vllHELaH~~-~~~H~~~F~~ll~~l~~e~~~l~~~G~~g~g 131 (336)
|-+.|-..+.|||||-+ +-+.|..|-+-.....+.--.-.+.-++|+.
T Consensus 193 dd~~lA~LIFHELAHQk~Y~~~DtAFNEsFAtaVEt~Gvr~Wl~~~g~p 241 (376)
T COG4324 193 DDTYLASLIFHELAHQKIYVNNDTAFNESFATAVETSGVRKWLRATGDP 241 (376)
T ss_pred ChHHHHHHHHHHHhhheEeecCcchHhHHHHHHHHHHhHHHHHHhcCCc
Confidence 44678889999999987 5577788888777776665555666666543
No 79
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=54.84 E-value=6 Score=34.61 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhhhcCcCCCc
Q 019784 86 EQILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 86 ~~i~~vllHELaH~~~~~H~ 105 (336)
..-..||+|||+|+.-.-+.
T Consensus 94 ~Sk~~TLiHE~SHf~~~~~T 113 (148)
T PF14521_consen 94 DSKEGTLIHEWSHFTAVGGT 113 (148)
T ss_dssp T-HHHHHHHHHHHSCCCT--
T ss_pred CchHHHHHHhhhhhhhhcCC
Confidence 45679999999997654333
No 80
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=54.40 E-value=4.4 Score=39.54 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.5
Q ss_pred CCCCCcccCCcc
Q 019784 292 GNLKGWSCKFCT 303 (336)
Q Consensus 292 ~~~~~W~C~~CT 303 (336)
..++.|+|+-|.
T Consensus 318 ppegswsc~KOG 329 (336)
T KOG1244|consen 318 PPEGSWSCHLCL 329 (336)
T ss_pred CCCCchhHHHHH
Confidence 457789999886
No 81
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=53.20 E-value=5.9 Score=35.34 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhcCcCCCchh
Q 019784 88 ILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 88 i~~vllHELaH~~~~~H~~~ 107 (336)
-.+|+.|||.|+.-.+||..
T Consensus 111 ~~~~~aHElGH~lGa~Hd~~ 130 (173)
T PF13574_consen 111 GIDTFAHELGHQLGAPHDFD 130 (173)
T ss_dssp HHHHHHHHHHHHHT---SSS
T ss_pred eeeeehhhhHhhcCCCCCCC
Confidence 56779999999999999866
No 82
>PRK04023 DNA polymerase II large subunit; Validated
Probab=53.11 E-value=15 Score=41.70 Aligned_cols=55 Identities=20% Similarity=0.433 Sum_probs=39.3
Q ss_pred CCCCCccCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCCCCCC
Q 019784 259 DVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSN 323 (336)
Q Consensus 259 ~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s 323 (336)
...+.=.|+.|.-. .....|..|+... ...|.|+.|...... ..|..||....+.
T Consensus 622 VEVg~RfCpsCG~~--t~~frCP~CG~~T------e~i~fCP~CG~~~~~--y~CPKCG~El~~~ 676 (1121)
T PRK04023 622 VEIGRRKCPSCGKE--TFYRRCPFCGTHT------EPVYRCPRCGIEVEE--DECEKCGREPTPY 676 (1121)
T ss_pred ecccCccCCCCCCc--CCcccCCCCCCCC------CcceeCccccCcCCC--CcCCCCCCCCCcc
Confidence 33456789999876 3556899999762 246999999765443 5699999876543
No 83
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=52.95 E-value=8.5 Score=28.02 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.5
Q ss_pred CCccCCcccccccccCccccccCCC
Q 019784 262 QMWQCNMCTLLNQPLALTCEACGTQ 286 (336)
Q Consensus 262 ~~W~C~~CT~~N~~~a~~C~aC~~~ 286 (336)
..+.|-.|.-.|++.+..|..|+..
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~~ 37 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGYK 37 (48)
T ss_pred cccchhcccCCCCccccccccCCCC
Confidence 5688888888888888888888853
No 84
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=52.63 E-value=5.8 Score=33.84 Aligned_cols=20 Identities=45% Similarity=0.693 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHhhhhhcCc
Q 019784 82 FFPYEQILDTMLHELCHNEY 101 (336)
Q Consensus 82 f~p~~~i~~vllHELaH~~~ 101 (336)
|-.|++|+.|++||+-|-..
T Consensus 70 we~y~qvlktllhefrh~mQ 89 (126)
T PF13058_consen 70 WEEYEQVLKTLLHEFRHAMQ 89 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999654
No 85
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=52.33 E-value=9.7 Score=42.59 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 019784 85 YEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMA 124 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~ 124 (336)
...|..|+.|||||-++||= --++.|..|+-
T Consensus 321 k~~va~vIaHElAHQWFGNL---------VTm~wW~dLWL 351 (882)
T KOG1046|consen 321 KQRVAEVIAHELAHQWFGNL---------VTMKWWNDLWL 351 (882)
T ss_pred HHHHHHHHHHHHHHHHhcCc---------ccHhhhhhhhh
Confidence 77899999999999999985 45666666664
No 86
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=51.80 E-value=4.8 Score=44.63 Aligned_cols=51 Identities=22% Similarity=0.501 Sum_probs=0.0
Q ss_pred CCccCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCCCCC
Q 019784 262 QMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYS 322 (336)
Q Consensus 262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~ 322 (336)
..-.|+.|... .....|..|++.. ...|.|+.|...-... .|..|+..-.+
T Consensus 654 ~~r~Cp~Cg~~--t~~~~Cp~CG~~T------~~~~~Cp~C~~~~~~~--~C~~C~~~~~~ 704 (900)
T PF03833_consen 654 GRRRCPKCGKE--TFYNRCPECGSHT------EPVYVCPDCGIEVEED--ECPKCGRETTS 704 (900)
T ss_dssp -------------------------------------------------------------
T ss_pred ecccCcccCCc--chhhcCcccCCcc------ccceeccccccccCcc--ccccccccCcc
Confidence 56789999876 4455899999762 2369999999876655 99999986433
No 87
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=51.65 E-value=14 Score=37.22 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=28.5
Q ss_pred CCCCCccCC-cccccccccCccccccCCCCcCC
Q 019784 259 DVGQMWQCN-MCTLLNQPLALTCEACGTQRNKS 290 (336)
Q Consensus 259 ~~~~~W~C~-~CT~~N~~~a~~C~aC~~~rp~~ 290 (336)
..+..|.|+ .|.-.|......|..|.++||..
T Consensus 214 ~~d~Dw~c~~~c~N~nfa~r~~cnrck~~Kp~~ 246 (351)
T KOG1995|consen 214 DEDGDWDCPPSCGNRNFAWREECNRCKAPKPER 246 (351)
T ss_pred cccccccccccccccccccccccccccCCCccc
Confidence 456789999 99999999999999999999854
No 88
>COG1773 Rubredoxin [Energy production and conversion]
Probab=50.80 E-value=8.3 Score=28.84 Aligned_cols=40 Identities=20% Similarity=0.607 Sum_probs=24.3
Q ss_pred CccCCcccccccc--cCccccccCCCCcCCCCCCCCcccCCccc
Q 019784 263 MWQCNMCTLLNQP--LALTCEACGTQRNKSVGNLKGWSCKFCTL 304 (336)
Q Consensus 263 ~W~C~~CT~~N~~--~a~~C~aC~~~rp~~~~~~~~W~C~~CT~ 304 (336)
.|.|..|.++=.+ ....|..|...+=. .-+..|.|+.|.+
T Consensus 3 ~~~C~~CG~vYd~e~Gdp~~gi~pgT~fe--dlPd~w~CP~Cg~ 44 (55)
T COG1773 3 RWRCSVCGYVYDPEKGDPRCGIAPGTPFE--DLPDDWVCPECGV 44 (55)
T ss_pred ceEecCCceEeccccCCccCCCCCCCchh--hCCCccCCCCCCC
Confidence 6889999887433 34556666544311 1245688887775
No 89
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=50.22 E-value=10 Score=31.25 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhhhcCc
Q 019784 86 EQILDTMLHELCHNEY 101 (336)
Q Consensus 86 ~~i~~vllHELaH~~~ 101 (336)
+.|..|++||++|..-
T Consensus 71 ~~I~~tlvhEiah~fG 86 (97)
T PF06262_consen 71 ELIRDTLVHEIAHHFG 86 (97)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5688999999999753
No 90
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=49.85 E-value=11 Score=33.73 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHhhhhhcCcCCCchh
Q 019784 83 FPYEQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 83 ~p~~~i~~vllHELaH~~~~~H~~~ 107 (336)
..+...-.+|.|||.|+.-++||..
T Consensus 126 ~~~~~~a~~~AHelGH~lGm~HD~~ 150 (199)
T PF01421_consen 126 RSGLSFAVIIAHELGHNLGMPHDGD 150 (199)
T ss_dssp SSHHHHHHHHHHHHHHHTT---TTT
T ss_pred chhHHHHHHHHHHHHHhcCCCCCCC
Confidence 3456777999999999999999865
No 91
>PRK15410 DgsA anti-repressor MtfA; Provisional
Probab=49.47 E-value=15 Score=35.49 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred ceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCch----------hHHHHHHHHH-HHHHHHHH
Q 019784 58 LLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNA----------DFYKLWDEIR-KECDELMA 124 (336)
Q Consensus 58 llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~----------~F~~ll~~l~-~e~~~l~~ 124 (336)
++|-.+.+| .|-|.+..-.. .+.+ .=..|++||+||-..+.++. ..|+-|.+++ .+|+.+..
T Consensus 117 ~~GEaw~~G-pVVLSW~d~~~--~~~~--dg~NVvIHEFAH~LDm~~G~~adG~PpL~~~~~~~W~~~~~~~~~~l~~ 189 (260)
T PRK15410 117 QSGQSWQQG-PIVLNWLDIQD--SFDA--SGFNLIIHEVAHKLDMRNGDRASGVPFIPLREVAGWEHDLHAAMNNIQE 189 (260)
T ss_pred ccccCcCCC-cEEEEHHHhhc--ccCC--CCcchhHhHHHhHhhhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 566667666 56666655221 2222 13589999999999988744 3444444443 45555543
No 92
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=49.32 E-value=8.1 Score=26.54 Aligned_cols=13 Identities=46% Similarity=1.219 Sum_probs=6.3
Q ss_pred CCcccCCcccccC
Q 019784 295 KGWSCKFCTLDNS 307 (336)
Q Consensus 295 ~~W~C~~CT~~N~ 307 (336)
..|.|..|...|.
T Consensus 23 ~~w~C~~C~~~N~ 35 (40)
T PF04810_consen 23 KTWICNFCGTKNP 35 (40)
T ss_dssp TEEEETTT--EEE
T ss_pred CEEECcCCCCcCC
Confidence 3566666665554
No 93
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=48.66 E-value=4.7 Score=36.72 Aligned_cols=20 Identities=40% Similarity=0.375 Sum_probs=17.5
Q ss_pred HHHHHHhhhhhcCcCCCchh
Q 019784 88 ILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 88 i~~vllHELaH~~~~~H~~~ 107 (336)
...||.|||.|+.-+.||..
T Consensus 140 ~a~~~aHElGH~LG~~HD~~ 159 (207)
T cd04273 140 SAFTIAHELGHVLGMPHDGD 159 (207)
T ss_pred eEEeeeeechhhcCCCCCCC
Confidence 34899999999999999865
No 94
>PF06167 Peptidase_M90: Glucose-regulated metallo-peptidase M90; InterPro: IPR010384 MtfA (earlier known as YeeI) is a transcription factor that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (PtsG) system, the major glucose transporter in Escherichia coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity []. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in E. coli. ; PDB: 3DL1_A 3KHI_A.
Probab=47.99 E-value=18 Score=34.74 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHH-HHHHHHhhcCceeeeecc--cCCCC------------------CCceeeecCCCcEEEEEecCCCCCCCCCCHHHH
Q 019784 30 VAK-QVQPIMRKHKWKVRILSE--FCPAN------------------PSLLGINIGGGAEVKLRLRRPNREWDFFPYEQI 88 (336)
Q Consensus 30 lA~-~v~pIM~~~~w~V~~L~E--f~P~~------------------~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i 88 (336)
||+ .+.||+.--.|....+.+ +||.. .-++|-.+..| .|-|.+-... ..+.....=
T Consensus 78 IAa~Acll~l~~~~~~y~~~~~IliYP~~f~~~~~~~~~~G~v~~~~~~~~Geaw~~G-~vvLSW~~~~--~g~~~~~dg 154 (253)
T PF06167_consen 78 IAAQACLLTLGLGLDWYDGWRTILIYPDAFVSPREQQDEDGVVHEEEEVLLGEAWERG-PVVLSWEDVQ--EGFENPNDG 154 (253)
T ss_dssp HHHHHHGGGTTT-GGGGTT-SEEEEESS-------------HHHHHHHT--------S--EEEEHHHHH--HCT--SSSS
T ss_pred HHHHHHHHHcCCChhHhCCCcEEEEeCccccCCceeecCCcceeccchhhhhccccCC-cEEEEHHHHh--hccCCCCCC
Confidence 444 488998888777777776 45642 13456556555 4555543211 122222333
Q ss_pred HHHHHhhhhhcCcC----------CCchhHHHHHHHHH-HHHHHHHHc
Q 019784 89 LDTMLHELCHNEYG----------PHNADFYKLWDEIR-KECDELMAK 125 (336)
Q Consensus 89 ~~vllHELaH~~~~----------~H~~~F~~ll~~l~-~e~~~l~~~ 125 (336)
..|++||+||...+ -|....+.-|.+++ ++|+.|..+
T Consensus 155 ~NVviHEfAH~LD~~~g~adG~P~l~~~~~~~~W~~~~~~~~~~l~~~ 202 (253)
T PF06167_consen 155 HNVVIHEFAHKLDMEDGAADGVPPLHPGMSYRRWHKVFSAEYERLRER 202 (253)
T ss_dssp --HHHHHHHHHHHCTTS--SS--S---GGGHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCCCCCCccCCcccHHHHHHHHHHHHHHHHHH
Confidence 47999999999855 25556666666554 577777754
No 95
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=46.98 E-value=30 Score=34.70 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhhhhhcC-cCCCchhHHHHHHHHHHHHHHHHH
Q 019784 83 FPYEQILDTMLHELCHNE-YGPHNADFYKLWDEIRKECDELMA 124 (336)
Q Consensus 83 ~p~~~i~~vllHELaH~~-~~~H~~~F~~ll~~l~~e~~~l~~ 124 (336)
.|-..+..+|+|||||-+ +-+-|..|=+-+..+..+.-...+
T Consensus 160 ~~~~~LA~LIfHELaHq~~Yv~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 160 YPDGELARLIFHELAHQTLYVKGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred CCchHHHHHHHHHHhhceeecCCCchhhHHHHHHHHHHHHHHH
Confidence 455788999999999987 446668888888888776544443
No 96
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=45.98 E-value=15 Score=35.85 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhhcCcCC
Q 019784 85 YEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~ 103 (336)
...+..+++|||||.++|+
T Consensus 292 ~~~~~~~iahElahqWfGn 310 (390)
T PF01433_consen 292 KQEIASLIAHELAHQWFGN 310 (390)
T ss_dssp HHHHHHHHHHHHHTTTBTT
T ss_pred hhhhHHHHHHHHHHHHhcc
Confidence 4578999999999999997
No 97
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=45.81 E-value=11 Score=41.70 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhhcCcCC
Q 019784 85 YEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~ 103 (336)
...+..|++|||||.++||
T Consensus 284 ~~~~~~viaHElAHqWFGn 302 (831)
T TIGR02412 284 KENRAGVILHEMAHMWFGD 302 (831)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999984
No 98
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=45.07 E-value=14 Score=36.53 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchhHHHH-HHHHHHHHHHHHHcccc
Q 019784 69 VKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKL-WDEIRKECDELMAKGIT 128 (336)
Q Consensus 69 I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~F~~l-l~~l~~e~~~l~~~G~~ 128 (336)
=.|+||.. .-+.|...++.+ +..-+-++.|.-|-+- -.+|.+++..+.++-+.
T Consensus 124 g~l~lRa~----Gtys~kvtDpi~---fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~ 177 (345)
T COG4260 124 GELFLRAH----GTYSIKVTDPIL---FIQQIPGNRDVYTVDDINQQYLSEFMGALATAIN 177 (345)
T ss_pred ceeEEeec----ceEEEEecCHHH---HHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHH
Confidence 35778875 356666666666 5566777777666543 45788888888776554
No 99
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=44.13 E-value=12 Score=37.87 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=12.8
Q ss_pred HHHHHHHhhhhhcC--cCCCch
Q 019784 87 QILDTMLHELCHNE--YGPHNA 106 (336)
Q Consensus 87 ~i~~vllHELaH~~--~~~H~~ 106 (336)
.-..|+||||+|+. +.++-.
T Consensus 296 Dqatt~LHE~TH~~~V~~pgt~ 317 (359)
T PF02102_consen 296 DQATTTLHEMTHAPAVYSPGTD 317 (359)
T ss_dssp -HHHHHHHHHHT-TTTSSS--B
T ss_pred CccchhhhhhhccccccCCCcc
Confidence 45689999999996 566543
No 100
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=43.57 E-value=13 Score=33.69 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=12.5
Q ss_pred CccccccCCCCcCCCCCCCCcccCCcc
Q 019784 277 ALTCEACGTQRNKSVGNLKGWSCKFCT 303 (336)
Q Consensus 277 a~~C~aC~~~rp~~~~~~~~W~C~~CT 303 (336)
.-.|.+||..--. ...|.|+.|.
T Consensus 134 ~~vC~vCGy~~~g----e~P~~CPiCg 156 (166)
T COG1592 134 VWVCPVCGYTHEG----EAPEVCPICG 156 (166)
T ss_pred EEEcCCCCCcccC----CCCCcCCCCC
Confidence 4467777744211 2346666664
No 101
>KOG3965 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.25 E-value=1.1e+02 Score=27.43 Aligned_cols=36 Identities=36% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecC
Q 019784 20 EDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIG 64 (336)
Q Consensus 20 ~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N 64 (336)
+.+|..+.+.++..|.-|. .+||.|..+.++=+||.
T Consensus 34 e~EA~A~V~e~~~~V~~i~---------VSe~Lp~~~dliyiNV~ 69 (160)
T KOG3965|consen 34 ELEAIAAVNEVAFAVQHIS---------VSEMLPRTSDLIYINVR 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHhcCCCCCeEEEEeE
Confidence 6788888888888888874 68999999999888885
No 102
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.45 E-value=19 Score=36.85 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=33.1
Q ss_pred CCCCCccCCcccccccccC-ccccccCCCCc------CCCCCCCCcccCCcccc
Q 019784 259 DVGQMWQCNMCTLLNQPLA-LTCEACGTQRN------KSVGNLKGWSCKFCTLD 305 (336)
Q Consensus 259 ~~~~~W~C~~CT~~N~~~a-~~C~aC~~~rp------~~~~~~~~W~C~~CT~~ 305 (336)
.....|.|+.|+++|-..- ..|..|+.... ++..+...--|+.|||.
T Consensus 86 ~~~~~~~~pls~vI~v~~~~~~~~~~g~~~~i~~~~~~~~~~~~~gp~~a~~~~ 139 (432)
T KOG2760|consen 86 DVEVTWVCPLSMVINVGEPAKSELTFGKINRIVVILHKPNPRFSPGPCPASTFA 139 (432)
T ss_pred ccceeeeeceeEEEEecCccchhhcccccceEEEEeCCCCCcCCCCCcccceee
Confidence 3446899999999997754 45888886642 22234456789999764
No 103
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=42.21 E-value=33 Score=33.58 Aligned_cols=22 Identities=14% Similarity=0.525 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 019784 19 GEDDARQILEKVAKQVQPIMRK 40 (336)
Q Consensus 19 ~~~~A~~~L~rlA~~v~pIM~~ 40 (336)
+.+.+..+|+.|...+.|+..+
T Consensus 35 ~~e~v~~f~~~l~~~~~p~~~~ 56 (365)
T cd06258 35 SPETVEGFFEELKRKLRPLLAK 56 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888877775443
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=42.01 E-value=15 Score=35.29 Aligned_cols=27 Identities=22% Similarity=0.721 Sum_probs=17.6
Q ss_pred CCCcccCCcccccCCcCccccccCCCC
Q 019784 294 LKGWSCKFCTLDNSSLSERCLACGEWR 320 (336)
Q Consensus 294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R 320 (336)
...|.|..|.+....-.+.|..|+++-
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCCCcc
Confidence 345777777777666667777776653
No 105
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=40.19 E-value=15 Score=39.39 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=14.1
Q ss_pred HHHHHHhhhhhcCcCC
Q 019784 88 ILDTMLHELCHNEYGP 103 (336)
Q Consensus 88 i~~vllHELaH~~~~~ 103 (336)
...|++|||||.+.||
T Consensus 279 ~~~viaHElAHqWfGN 294 (601)
T TIGR02411 279 NVDVIAHELAHSWSGN 294 (601)
T ss_pred hhhhHHHHHHhhccCc
Confidence 4589999999999995
No 106
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=40.03 E-value=3e+02 Score=25.32 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCC-----------------Cceee-----ecCCCcEEEEEecCCCC
Q 019784 21 DDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANP-----------------SLLGI-----NIGGGAEVKLRLRRPNR 78 (336)
Q Consensus 21 ~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~-----------------~llG~-----N~N~G~~I~LRLR~~~~ 78 (336)
+.-++.+++....-..++.+-||+-....+..|.+. ..+|+ |-..|+-|.=.+-..++
T Consensus 20 ~~~r~aI~~A~~~Wn~~fe~~Gf~~a~~v~~~p~~~~~~Diry~~ir~~~~~~~~~~~gps~~dPrTGeIl~a~V~l~~~ 99 (197)
T cd04276 20 EKYRDAIREGVLYWNKAFEKAGFKNAIIVKVLPDDADPGDIRYNVIRWIHSPNGGWAYGPSVVDPRTGEILKADVILYSG 99 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccEEEEeCCCCcCcccceEEEEEEEecCCCcceecccccCCCCCCeEEEEEEeCch
Confidence 667888888888888999999999888888888651 12222 11124433222222111
Q ss_pred CCCC--C-----CHHHHHHHHHhhhhhcCcCCCc
Q 019784 79 EWDF--F-----PYEQILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 79 ~~~f--~-----p~~~i~~vllHELaH~~~~~H~ 105 (336)
-... . --+.+..+++||+-|..--.|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~he~gh~lGl~hn 133 (197)
T cd04276 100 FLRQDQLWYEDLLAASLRYLLAHEVGHTLGLRHN 133 (197)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1000 1 1145889999999999988884
No 107
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=39.52 E-value=17 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=15.3
Q ss_pred ccCCcccccCCcCccccccCCC
Q 019784 298 SCKFCTLDNSSLSERCLACGEW 319 (336)
Q Consensus 298 ~C~~CT~~N~~~~~~C~~Cg~~ 319 (336)
.|+.|.-.-+.....|..||..
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCC
Confidence 4677777777777777777753
No 108
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=39.23 E-value=14 Score=37.44 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhhcCcCCC
Q 019784 85 YEQILDTMLHELCHNEYGPH 104 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H 104 (336)
.+.+..||+||+-|+++-+.
T Consensus 136 ~~~~~sTlAHEfQHmInfy~ 155 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQ 155 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999996653
No 109
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=38.81 E-value=25 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=22.3
Q ss_pred cccCCcccccCCcCccccccCCCCCCCCC-CCCCC
Q 019784 297 WSCKFCTLDNSSLSERCLACGEWRYSNGP-PISTP 330 (336)
Q Consensus 297 W~C~~CT~~N~~~~~~C~~Cg~~R~~s~P-p~~~~ 330 (336)
-.|+.|....- ...|..||.+-.+.-| .-+|+
T Consensus 6 r~C~~CgvYTL--k~~CP~CG~~t~~~~P~rfSp~ 38 (56)
T PRK13130 6 RKCPKCGVYTL--KEICPVCGGKTKNPHPPRFSPE 38 (56)
T ss_pred eECCCCCCEEc--cccCcCCCCCCCCCCCCCCCCC
Confidence 46778876665 7889999998775444 44444
No 110
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=38.81 E-value=15 Score=31.50 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhhcCcCCCchh
Q 019784 86 EQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 86 ~~i~~vllHELaH~~~~~H~~~ 107 (336)
.....|++|||.|..-..|+..
T Consensus 94 ~~~~~~~~HElGH~LGl~H~~~ 115 (167)
T cd00203 94 KEGAQTIAHELGHALGFYHDHD 115 (167)
T ss_pred ccchhhHHHHHHHHhCCCccCc
Confidence 4578999999999999999754
No 111
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=38.58 E-value=16 Score=30.89 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHhhhhhcCcCCCc
Q 019784 83 FPYEQILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 83 ~p~~~i~~vllHELaH~~~~~H~ 105 (336)
.+...+..|++|||-|..--.|+
T Consensus 100 ~~~~~~~~v~~HEiGHaLGL~H~ 122 (154)
T PF00413_consen 100 DSGNDLQSVAIHEIGHALGLDHS 122 (154)
T ss_dssp SSSEEHHHHHHHHHHHHTTBESS
T ss_pred hhhhhhhhhhhhccccccCcCcC
Confidence 34557889999999999988886
No 112
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=38.06 E-value=20 Score=26.10 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=22.5
Q ss_pred CCcccCCcccccCCcCccccccCC
Q 019784 295 KGWSCKFCTLDNSSLSERCLACGE 318 (336)
Q Consensus 295 ~~W~C~~CT~~N~~~~~~C~~Cg~ 318 (336)
..+.|-.|...|++.+..|--||.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 478999999999999999999997
No 113
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=36.31 E-value=36 Score=35.23 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHhhcCceeeeecccC---C---CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcC
Q 019784 34 VQPIMRKHKWKVRILSEFC---P---ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYG 102 (336)
Q Consensus 34 v~pIM~~~~w~V~~L~Ef~---P---~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~ 102 (336)
++-+++..||--..+-+.- | .|.-+.|++.|++-+|.=.|-.. ....--|+|..|+.|||.|-.++
T Consensus 223 Ie~la~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~---~~~~~~eel~AVl~HELGHW~~~ 294 (428)
T KOG2719|consen 223 IERLADSVGFPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLE---EEHLNNEELVAVLAHELGHWKLN 294 (428)
T ss_pred HHHHHHhcCCCceEEEEEecCCCCCCCCeeeeeccccceEEEehhhhhh---hhccccHHHHHHHHHHhhHHHHh
Confidence 3444455566655555554 3 26779999998886664333320 11145689999999999997764
No 114
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=36.25 E-value=17 Score=34.21 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=16.7
Q ss_pred ccccccCCCCcCCCCCCCCcccCCcccccCCcC
Q 019784 278 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLS 310 (336)
Q Consensus 278 ~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~ 310 (336)
..|..||. .....|.|+.|.+......
T Consensus 310 ~~C~~cg~------~~~r~~~C~~cg~~~~rD~ 336 (364)
T COG0675 310 KTCPCCGH------LSGRLFKCPRCGFVHDRDV 336 (364)
T ss_pred ccccccCC------ccceeEECCCCCCeehhhH
Confidence 34666665 1234688999988766543
No 115
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=36.24 E-value=68 Score=30.09 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.0
Q ss_pred CHHHHHHHHHhhhhhcCcCCCc
Q 019784 84 PYEQILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 84 p~~~i~~vllHELaH~~~~~H~ 105 (336)
+.+.-.-||.|||-|.+-..+.
T Consensus 68 ~~~r~rFtlAHELGH~llH~~~ 89 (213)
T COG2856 68 SLERKRFTLAHELGHALLHTDL 89 (213)
T ss_pred CHHHHHHHHHHHHhHHHhcccc
Confidence 5677889999999999866554
No 116
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=36.18 E-value=51 Score=29.23 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCc
Q 019784 66 GAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 66 G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~ 105 (336)
+..|.|+...... ...+-.....|++|||-|.+--.|.
T Consensus 93 ~g~i~~~~~~~~~--~~~~g~~~~~t~~HEiGHaLGL~H~ 130 (186)
T cd04277 93 GGDIWFNSSYDTN--SDSPGSYGYQTIIHEIGHALGLEHP 130 (186)
T ss_pred cceeEEecCcccc--cCCCChhhHHHHHHHHHHHhcCCCC
Confidence 3467777665321 1134566789999999999988774
No 117
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=35.93 E-value=37 Score=29.31 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhhhhhcCcCCCch
Q 019784 84 PYEQILDTMLHELCHNEYGPHNA 106 (336)
Q Consensus 84 p~~~i~~vllHELaH~~~~~H~~ 106 (336)
+...+..|++|||=|..--.|..
T Consensus 103 ~~~~~~~~~~HEiGHaLGL~H~~ 125 (157)
T cd04278 103 GGTDLFSVAAHEIGHALGLGHSS 125 (157)
T ss_pred ccchHHHHHHHHhccccccCCCC
Confidence 44679999999999999889963
No 118
>PF12898 Stc1: Stc1 domain; InterPro: IPR024630 The domain contains 8 conserved cysteines that may bind to zinc. In S. pombe, proteins containing the domain act as protein linkers, which link the chromatin modifying CLRC complex to RNAi by tethering it to the RITS complex. This domain has a slightly different arrangement of its CxxC pairs from the LIM domain, hence it is not part of that family []. The tandem zinc-finger structure could mediate protein-protein interactions.
Probab=35.82 E-value=32 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=20.5
Q ss_pred CCCcccCCcccccCCcCccccccCCCCCC
Q 019784 294 LKGWSCKFCTLDNSSLSERCLACGEWRYS 322 (336)
Q Consensus 294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~ 322 (336)
...-.|..|+-. ...-.+|+.|+..++.
T Consensus 35 ~~~i~C~~ct~~-q~~El~C~~C~~~k~l 62 (84)
T PF12898_consen 35 NSGIRCRECTGG-QVVELTCSPCGKTKPL 62 (84)
T ss_pred CCCCCCccCCCC-CcCcCEeccCCCCcCH
Confidence 456788888876 4555688899887764
No 119
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=35.73 E-value=24 Score=33.02 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=14.3
Q ss_pred HHHHHHhhhhhcCcCCCch
Q 019784 88 ILDTMLHELCHNEYGPHNA 106 (336)
Q Consensus 88 i~~vllHELaH~~~~~H~~ 106 (336)
+-.+|+||++|++++.=+.
T Consensus 101 ~~fil~HE~~Hv~~~h~~~ 119 (206)
T PF10463_consen 101 IAFILLHELAHVVLGHEGD 119 (206)
T ss_pred HHHHHHHHHHHHHHcCccc
Confidence 5578999999977765433
No 120
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=35.72 E-value=23 Score=30.31 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhhcCcCCCchh
Q 019784 86 EQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 86 ~~i~~vllHELaH~~~~~H~~~ 107 (336)
.....|++|||-|.+-..|...
T Consensus 92 ~~~~~~~~HEiGHaLGL~H~~~ 113 (165)
T cd04268 92 ARLRNTAEHELGHALGLRHNFA 113 (165)
T ss_pred HHHHHHHHHHHHHHhcccccCc
Confidence 4688999999999999888754
No 121
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.40 E-value=44 Score=39.04 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=27.4
Q ss_pred CccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCCCCC
Q 019784 277 ALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYS 322 (336)
Q Consensus 277 a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~ 322 (336)
..+|..|++.-+ .+.|+.|........ .|..||..-.+
T Consensus 667 ~rkCPkCG~~t~-------~~fCP~CGs~te~vy-~CPsCGaev~~ 704 (1337)
T PRK14714 667 RRRCPSCGTETY-------ENRCPDCGTHTEPVY-VCPDCGAEVPP 704 (1337)
T ss_pred EEECCCCCCccc-------cccCcccCCcCCCce-eCccCCCccCC
Confidence 467999987643 358999988776544 89999886544
No 122
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.86 E-value=26 Score=26.13 Aligned_cols=28 Identities=25% Similarity=0.663 Sum_probs=16.2
Q ss_pred cccccCCCCcCCCCCCCCcccCCcccccC
Q 019784 279 TCEACGTQRNKSVGNLKGWSCKFCTLDNS 307 (336)
Q Consensus 279 ~C~aC~~~rp~~~~~~~~W~C~~CT~~N~ 307 (336)
.|..|+..... ......|.|+.|.+...
T Consensus 30 ~C~~CG~~~~~-~~~~r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 30 TCPRCGHRNKK-RRSGRVFTCPNCGFEMD 57 (69)
T ss_pred CccCccccccc-ccccceEEcCCCCCEEC
Confidence 45556544333 12345788888887644
No 123
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=33.84 E-value=20 Score=37.20 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=6.7
Q ss_pred CccccccCCCCC
Q 019784 310 SERCLACGEWRY 321 (336)
Q Consensus 310 ~~~C~~Cg~~R~ 321 (336)
.|.|..|+.+|.
T Consensus 458 ~~~cp~c~~~k~ 469 (479)
T PRK05452 458 NFLCPECSLGKD 469 (479)
T ss_pred CCcCcCCCCcHH
Confidence 455556665553
No 124
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=33.09 E-value=56 Score=35.79 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=62.1
Q ss_pred cceEEEecCCCCC------------HHHHHHHHHHHHHH---------HHHHHhhcCceeeeecccC---CCCCCceeee
Q 019784 7 NKVWEVKALKKIG------------EDDARQILEKVAKQ---------VQPIMRKHKWKVRILSEFC---PANPSLLGIN 62 (336)
Q Consensus 7 ~~v~~i~~L~~p~------------~~~A~~~L~rlA~~---------v~pIM~~~~w~V~~L~Ef~---P~~~~llG~N 62 (336)
+-|.+|+.+..|. .++-..+|+-++-. +..+.--+.|.+++|.=-| |...+-=|++
T Consensus 280 F~IkrIkI~~~~~~~~~~~~~~N~f~~e~~~v~~fl~l~s~~~~sdfCLAylfT~rdFe~GtLGLAwVgsp~~~saGGIC 359 (764)
T KOG3658|consen 280 FVIKRIKILDSPACVRPGEDHYNMFCEEVKDVLEFLSLNSEEKHSDFCLAYLFTYRDFEGGTLGLAWVGSPRSNSAGGIC 359 (764)
T ss_pred EEEEEEEecCchhhcccCcCccccchhhHHHHHHHhhhhhhccccchhheeeeeecccccceeeeEEeccCccCCCCccc
Confidence 4577888887554 23445555555421 5566777788888876443 3222222332
Q ss_pred -----cCCCcEEEEEecCC--CCCCCCCCHHHHHHHHHhhhhhcCcCCCchh
Q 019784 63 -----IGGGAEVKLRLRRP--NREWDFFPYEQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 63 -----~N~G~~I~LRLR~~--~~~~~f~p~~~i~~vllHELaH~~~~~H~~~ 107 (336)
.|-|.++.|+.=.. -+...-.|.....-|+.||+-||.-++||..
T Consensus 360 ~k~~~y~~G~~~sLNtGi~T~~NYg~~Vp~kvs~lt~AHEiGHNfGSpHDp~ 411 (764)
T KOG3658|consen 360 EKAYTYNEGKKRSLNTGISTSVNYGKRVPTKVSDLTLAHEIGHNFGSPHDPD 411 (764)
T ss_pred ccceeccCcceEEeecceeeeeecCCccCcchhheeehhhhccccCCCCCCC
Confidence 12255555543221 1234567889999999999999999999854
No 125
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=32.79 E-value=23 Score=38.89 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhcCcCCCch
Q 019784 85 YEQILDTMLHELCHNEYGPHNA 106 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H~~ 106 (336)
+..+..||.|||+|++-+.||.
T Consensus 320 ~~~~a~v~AhelgH~lGm~hD~ 341 (716)
T KOG3607|consen 320 LLAFAVVLAHELGHNLGMIHDE 341 (716)
T ss_pred chhHHHHHHHHHHhhcCccccc
Confidence 4567789999999999999997
No 126
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=32.08 E-value=1.8e+02 Score=20.39 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=33.8
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHHHH-hhcCceeeeecccCCCC
Q 019784 9 VWEVKALKKIGEDDARQILEKVAKQVQPIM-RKHKWKVRILSEFCPAN 55 (336)
Q Consensus 9 v~~i~~L~~p~~~~A~~~L~rlA~~v~pIM-~~~~w~V~~L~Ef~P~~ 55 (336)
+..|+.++....++-++|.+.|+..+..++ .....-.-.+.|+-|.+
T Consensus 2 ~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~ 49 (58)
T cd00491 2 FVQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKEN 49 (58)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchh
Confidence 456777875578999999999999988888 44444555566664433
No 127
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.79 E-value=35 Score=37.13 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=33.8
Q ss_pred CccCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCCCC
Q 019784 263 MWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRY 321 (336)
Q Consensus 263 ~W~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~ 321 (336)
.=.|..|.. ...|..|..+-.-. ...+.-.|+.|.+.- ..+.|..||....
T Consensus 383 ~l~C~~Cg~-----~~~C~~C~~~L~~h-~~~~~l~Ch~CG~~~--~p~~Cp~Cgs~~l 433 (665)
T PRK14873 383 SLACARCRT-----PARCRHCTGPLGLP-SAGGTPRCRWCGRAA--PDWRCPRCGSDRL 433 (665)
T ss_pred eeEhhhCcC-----eeECCCCCCceeEe-cCCCeeECCCCcCCC--cCccCCCCcCCcc
Confidence 346777754 34677777553221 234568899999963 4789999998753
No 128
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=30.61 E-value=4.3 Score=30.02 Aligned_cols=42 Identities=29% Similarity=0.851 Sum_probs=27.7
Q ss_pred CCccCCcccccccccCc-cccccCCCCcCCCCCCCCcccCCcccccCCcCccccccC
Q 019784 262 QMWQCNMCTLLNQPLAL-TCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACG 317 (336)
Q Consensus 262 ~~W~C~~CT~~N~~~a~-~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg 317 (336)
...+|+.|.-.-+...+ .|+.|+ .|.|..|...-. -.|..|+
T Consensus 6 sry~CDLCn~~~p~~~LRQCvlCG-----------RWaC~sCW~deY---Y~CksC~ 48 (57)
T PF14445_consen 6 SRYSCDLCNSSHPISELRQCVLCG-----------RWACNSCWQDEY---YTCKSCN 48 (57)
T ss_pred hhHhHHhhcccCcHHHHHHHhhhc-----------hhhhhhhhhhhH---hHHHhhh
Confidence 34677777666655543 588888 799999986543 3455554
No 129
>PF14891 Peptidase_M91: Effector protein
Probab=30.58 E-value=16 Score=32.60 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.6
Q ss_pred HHHHHhhhhhcCcCCCch
Q 019784 89 LDTMLHELCHNEYGPHNA 106 (336)
Q Consensus 89 ~~vllHELaH~~~~~H~~ 106 (336)
.-+|.|||+|-.|.-++.
T Consensus 104 ~v~L~HEL~HA~~~~~Gt 121 (174)
T PF14891_consen 104 FVVLYHELIHAYDYMNGT 121 (174)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 468999999998887753
No 130
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=30.10 E-value=58 Score=36.21 Aligned_cols=60 Identities=22% Similarity=0.462 Sum_probs=45.2
Q ss_pred CCccCCcccccccccCccccccCCCCcCC------CCCCCCcccCCcccccC----CcCccccccCCCCC
Q 019784 262 QMWQCNMCTLLNQPLALTCEACGTQRNKS------VGNLKGWSCKFCTLDNS----SLSERCLACGEWRY 321 (336)
Q Consensus 262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp~~------~~~~~~W~C~~CT~~N~----~~~~~C~~Cg~~R~ 321 (336)
..-.|..|...=+++.+.|.-|.+.-|.= .....-|-|+.|--.-. ++-..|..|..+-.
T Consensus 1116 ~~vdc~~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1116 AKVDCSVCGAKIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSMES 1185 (1189)
T ss_pred cceeeeecCCcCCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccChhh
Confidence 45789999999999999999998877642 24456899999974333 45688999988753
No 131
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.90 E-value=36 Score=35.63 Aligned_cols=51 Identities=20% Similarity=0.528 Sum_probs=31.9
Q ss_pred CccCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCCC
Q 019784 263 MWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWR 320 (336)
Q Consensus 263 ~W~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R 320 (336)
.-.|..|.. ...|..|..+-.-. .....-.|+.|.+.-... +.|..|+...
T Consensus 213 ~~~C~~Cg~-----~~~C~~C~~~l~~h-~~~~~l~Ch~Cg~~~~~~-~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCGY-----ILCCPNCDVSLTYH-KKEGKLRCHYCGYQEPIP-KTCPQCGSED 263 (505)
T ss_pred eeEhhhCcC-----ccCCCCCCCceEEe-cCCCeEEcCCCcCcCCCC-CCCCCCCCCe
Confidence 457777754 35688887552211 234467788888765544 5888888754
No 132
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=29.24 E-value=14 Score=27.06 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=19.5
Q ss_pred CccCCcccccccccCccccccCCCC
Q 019784 263 MWQCNMCTLLNQPLALTCEACGTQR 287 (336)
Q Consensus 263 ~W~C~~CT~~N~~~a~~C~aC~~~r 287 (336)
.-.|-.|.-.|++.+..|.-|+...
T Consensus 14 kkIC~rC~Arnp~~A~kCRkC~~k~ 38 (50)
T COG1552 14 KKICRRCYARNPPRATKCRKCGYKN 38 (50)
T ss_pred HHHHHHhcCCCCcchhHHhhccCCC
Confidence 3467888888888888888887653
No 133
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=28.44 E-value=25 Score=30.25 Aligned_cols=15 Identities=40% Similarity=0.357 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhcCc
Q 019784 87 QILDTMLHELCHNEY 101 (336)
Q Consensus 87 ~i~~vllHELaH~~~ 101 (336)
-...||.|||+|...
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 467999999999864
No 134
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=28.16 E-value=25 Score=29.51 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.1
Q ss_pred HHHHhhhhhcCcCCCchh
Q 019784 90 DTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 90 ~vllHELaH~~~~~H~~~ 107 (336)
.|++|||-|.+-..|...
T Consensus 88 ~~~~HEigHaLGl~H~~~ 105 (140)
T smart00235 88 GVAAHELGHALGLYHEQS 105 (140)
T ss_pred ccHHHHHHHHhcCCcCCC
Confidence 499999999998888643
No 135
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=27.98 E-value=31 Score=26.55 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.3
Q ss_pred cccCCcccccCCcCccccccCCCCC
Q 019784 297 WSCKFCTLDNSSLSERCLACGEWRY 321 (336)
Q Consensus 297 W~C~~CT~~N~~~~~~C~~Cg~~R~ 321 (336)
-.|..|-+..+.....|..||....
T Consensus 5 kAC~~Ck~l~~~d~e~CP~Cgs~~~ 29 (64)
T COG2093 5 KACKNCKRLTPEDTEICPVCGSTDL 29 (64)
T ss_pred HHHhhccccCCCCCccCCCCCCccc
Confidence 4688888888888888999988754
No 136
>PRK09672 phage exclusion protein Lit; Provisional
Probab=27.74 E-value=29 Score=34.36 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhcCcCCC
Q 019784 87 QILDTMLHELCHNEYGPH 104 (336)
Q Consensus 87 ~i~~vllHELaH~~~~~H 104 (336)
.+-++++||++|++++.=
T Consensus 164 A~a~i~~HEiaHv~~~h~ 181 (305)
T PRK09672 164 ALAWILLHEIAHVEFQHS 181 (305)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 355899999999997643
No 137
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=27.74 E-value=17 Score=35.60 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=26.0
Q ss_pred ccCccccccCCCCcCCCC-------CCCCcccCCcccccCCcCccccccCCCCC
Q 019784 275 PLALTCEACGTQRNKSVG-------NLKGWSCKFCTLDNSSLSERCLACGEWRY 321 (336)
Q Consensus 275 ~~a~~C~aC~~~rp~~~~-------~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~ 321 (336)
.+...|-+||+.--.+.- .-.--.|+.|-..=.---.+|+.|+..+.
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~~ 236 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSKK 236 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccccCC
Confidence 344567777755332221 11134677776655555567777777664
No 138
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=27.60 E-value=40 Score=28.99 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhcCcCCCchh
Q 019784 85 YEQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H~~~ 107 (336)
-..+..|++|||=|.+--.|...
T Consensus 101 ~~~~~~~~~HEiGHaLGL~H~~~ 123 (156)
T cd04279 101 AENLQAIALHELGHALGLWHHSD 123 (156)
T ss_pred chHHHHHHHHHhhhhhcCCCCCC
Confidence 35788999999999998888643
No 139
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.46 E-value=53 Score=34.39 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=26.2
Q ss_pred CccCCccc----ccccccCccccccCCCCcCCCCCCCCcccCCcccc
Q 019784 263 MWQCNMCT----LLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLD 305 (336)
Q Consensus 263 ~W~C~~CT----~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~ 305 (336)
.-.|+.|. |.-....+.|.-|+...+. .|.|+.|.-.
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------~~~Cp~C~s~ 262 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI------PKTCPQCGSE 262 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCC------CCCCCCCCCC
Confidence 45688886 4445566789999876543 5899999754
No 140
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=26.22 E-value=43 Score=35.16 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=15.0
Q ss_pred CHHHHHHHHHhhhhhcCcCC
Q 019784 84 PYEQILDTMLHELCHNEYGP 103 (336)
Q Consensus 84 p~~~i~~vllHELaH~~~~~ 103 (336)
.+...++|++||++|..-..
T Consensus 206 ~~~~~~~~~~HEi~HaLGFs 225 (521)
T PF01457_consen 206 YFQEFFRTVIHEIAHALGFS 225 (521)
T ss_dssp --HHHHHHHHHHHHHHTT-S
T ss_pred hhhcccceeeeeeeeeeeec
Confidence 46788999999999998543
No 141
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=26.11 E-value=24 Score=37.30 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=34.2
Q ss_pred ccCCccccc---ccccCccccccCCCCcCC-----CCCCCCcccCCcccccCCcCccccccCC
Q 019784 264 WQCNMCTLL---NQPLALTCEACGTQRNKS-----VGNLKGWSCKFCTLDNSSLSERCLACGE 318 (336)
Q Consensus 264 W~C~~CT~~---N~~~a~~C~aC~~~rp~~-----~~~~~~W~C~~CT~~N~~~~~~C~~Cg~ 318 (336)
-.|..||-. |...-..|.-|...-.++ .-.++.|-|..|.+-- -....|++|-.
T Consensus 194 ~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~-~~i~~C~fCps 255 (669)
T COG5141 194 DICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGE-YQIRCCSFCPS 255 (669)
T ss_pred hhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccc-cceeEEEeccC
Confidence 456666643 233345688887654332 1467899999998742 34557999854
No 142
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=25.98 E-value=34 Score=31.42 Aligned_cols=74 Identities=20% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCceeeeecccCCC--CCCceeeecCCC-------cEEEEEecCCCCCCCCCCHHHHHHHHH
Q 019784 23 ARQILEKVAKQVQPIMRKHKWKVRILSEFCPA--NPSLLGINIGGG-------AEVKLRLRRPNREWDFFPYEQILDTML 93 (336)
Q Consensus 23 A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~--~~~llG~N~N~G-------~~I~LRLR~~~~~~~f~p~~~i~~vll 93 (336)
+..++......+..+-...+.-++.| |.+. +....|+.+-.+ ..+.-.... ...-.+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~D~v~l--~~~~~~~~~~~GlA~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~a 142 (206)
T PF13583_consen 74 ARYTLNNALATFNSWRGSKNADLVIL--LTDTNKDSGTCGLAYVGSVCWDNAKAGAYSDPDL---------SANGYQTFA 142 (206)
T ss_pred hhhhhhHHHHHHHHHhcccCCCEEEE--EeccccCCCCCCeeeeccccccccceEEEEeccc---------ccccchHHH
Confidence 44455444445555556666667766 4443 344455532111 111111110 111237899
Q ss_pred hhhhhcCcCCCchh
Q 019784 94 HELCHNEYGPHNAD 107 (336)
Q Consensus 94 HELaH~~~~~H~~~ 107 (336)
|||-|+.--.|+.+
T Consensus 143 HEiGH~lGl~H~~~ 156 (206)
T PF13583_consen 143 HEIGHNLGLRHDFD 156 (206)
T ss_pred HHHHHHhcCCCCcc
Confidence 99999999999866
No 143
>PRK09928 choline transport protein BetT; Provisional
Probab=25.95 E-value=1.6e+02 Score=32.46 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHH----HHHHHHhhcCceeeeecccCCCCC---CceeeecCCCcEEE
Q 019784 17 KIGEDDARQILEKVAK----QVQPIMRKHKWKVRILSEFCPANP---SLLGINIGGGAEVK 70 (336)
Q Consensus 17 ~p~~~~A~~~L~rlA~----~v~pIM~~~~w~V~~L~Ef~P~~~---~llG~N~N~G~~I~ 70 (336)
.|.+++++++|+.++. .|..-|+++||.|.....+ +.+. ..+.+.+.+|+...
T Consensus 539 ~p~~~~~~~f~~~~~~pA~~~v~~el~~~g~~~~~~~~~-~~~~~~~~~~~l~v~~~~~~~ 598 (679)
T PRK09928 539 YPGTRYTRRMLDTVCRPAMEEVAQELRLRGAYVELNELP-PEEDERLGHLDLLVHLGDEQN 598 (679)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEEecc-ccccCCCCceEEEEccCCCCc
Confidence 7999999999999987 5999999999999987633 3332 35677787776543
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.07 E-value=62 Score=35.77 Aligned_cols=49 Identities=18% Similarity=0.608 Sum_probs=37.4
Q ss_pred ccCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCC
Q 019784 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEW 319 (336)
Q Consensus 264 W~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~ 319 (336)
=.|..|.++ ..|..|..+-.-. ...+.-.|+.|.+. ...-..|..||+.
T Consensus 436 l~C~~Cg~v-----~~Cp~Cd~~lt~H-~~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYI-----AECPNCDSPLTLH-KATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCc-----ccCCCCCcceEEe-cCCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 468888654 5788888663221 33468999999999 8888999999987
No 145
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=24.54 E-value=36 Score=32.09 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhcCcCCCc
Q 019784 85 YEQILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H~ 105 (336)
...++.||+||+.|..+...+
T Consensus 89 ~~~~~~~l~HE~GHAlI~~~~ 109 (220)
T PF14247_consen 89 IGNVLFTLYHELGHALIDDLD 109 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999998877654
No 146
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.42 E-value=30 Score=29.01 Aligned_cols=42 Identities=26% Similarity=0.589 Sum_probs=28.4
Q ss_pred cCCccc----cc-ccccCccccccCCCCcCCCCCCCCcccCCccccc-CCcCccccccCCC
Q 019784 265 QCNMCT----LL-NQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDN-SSLSERCLACGEW 319 (336)
Q Consensus 265 ~C~~CT----~~-N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N-~~~~~~C~~Cg~~ 319 (336)
.|..|. |+ |.. ..|..|. ...|..|.... ....|.|.+|...
T Consensus 56 ~C~~C~~~fg~l~~~~--~~C~~C~-----------~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 56 HCARCGKPFGFLFNRG--RVCVDCK-----------HRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp B-TTTS-BCSCTSTTC--EEETTTT-----------EEEETTSEEETSSSCCEEEHHHHHH
T ss_pred chhhhCCcccccCCCC--CcCCcCC-----------ccccCccCCcCCCCCCEEChhhHHH
Confidence 677773 22 333 5688887 67899998874 5678889888653
No 147
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=24.39 E-value=41 Score=27.54 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=18.4
Q ss_pred ccccccCCCCcCCCCCCCCcccCCcccccC
Q 019784 278 LTCEACGTQRNKSVGNLKGWSCKFCTLDNS 307 (336)
Q Consensus 278 ~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~ 307 (336)
..|..|+.+.-.. ...+.|.|..|.+.=.
T Consensus 36 ~~Cp~C~~~~VkR-~a~GIW~C~kCg~~fA 64 (89)
T COG1997 36 HVCPFCGRTTVKR-IATGIWKCRKCGAKFA 64 (89)
T ss_pred CcCCCCCCcceee-eccCeEEcCCCCCeec
Confidence 3577777663222 3467899999886543
No 148
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=24.32 E-value=38 Score=36.81 Aligned_cols=18 Identities=50% Similarity=1.298 Sum_probs=13.3
Q ss_pred CCCccCCcccccccccCccccccCCC
Q 019784 261 GQMWQCNMCTLLNQPLALTCEACGTQ 286 (336)
Q Consensus 261 ~~~W~C~~CT~~N~~~a~~C~aC~~~ 286 (336)
...|.|+-|+ .|++|++.
T Consensus 60 ~~gWrC~~cr--------vCe~c~~~ 77 (694)
T KOG4443|consen 60 SGGWRCPSCR--------VCEACGTT 77 (694)
T ss_pred cCCcccCCce--------eeeecccc
Confidence 3459999996 58888744
No 149
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=23.97 E-value=55 Score=33.03 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHH
Q 019784 82 FFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKE 118 (336)
Q Consensus 82 f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e 118 (336)
.+=||.++.||||||-|+.+|--+..--+.+-|+..-
T Consensus 77 hLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~a 113 (396)
T KOG0593|consen 77 HLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKA 113 (396)
T ss_pred EEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3456778999999999999998776666666555543
No 150
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.35 E-value=2e+02 Score=30.45 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhc
Q 019784 20 EDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHN 99 (336)
Q Consensus 20 ~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~ 99 (336)
-+.+-...+|+|..|...|.+ =..|-+| +. -.-.-+.|-|....|+..-+=.+.--..|+|||.|+
T Consensus 178 Yq~~S~~~~~lAe~vs~~i~~----E~~lFdf-r~---------~~~~p~LLiLDR~~DpvTPLL~qWTYQaMvHEl~gi 243 (549)
T KOG1299|consen 178 YQTSSRACKRLAEEVSYRITK----ESTLFDF-RR---------TDSPPLLLILDRRDDPVTPLLNQWTYQAMVHELLGI 243 (549)
T ss_pred eecCCHHHHHHHHHHHHHHhh----hhhhccc-cc---------CCCCCeEEEEecCCCCCchhhhHHHHHHHHHHHhcc
Confidence 344556788899988888877 1233333 11 011246677777677777777777888999999997
Q ss_pred C
Q 019784 100 E 100 (336)
Q Consensus 100 ~ 100 (336)
.
T Consensus 244 ~ 244 (549)
T KOG1299|consen 244 K 244 (549)
T ss_pred c
Confidence 4
No 151
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=22.96 E-value=84 Score=27.34 Aligned_cols=30 Identities=27% Similarity=0.640 Sum_probs=24.5
Q ss_pred CCCCcccCCcccccCCcCccccccCCCCCCC
Q 019784 293 NLKGWSCKFCTLDNSSLSERCLACGEWRYSN 323 (336)
Q Consensus 293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s 323 (336)
....|-|..|.-.=.+ -..|..|++--++.
T Consensus 94 ~~~~W~Cv~C~~~Y~G-eK~C~~C~tGiYS~ 123 (128)
T PF11682_consen 94 RKTDWHCVMCGNHYHG-EKYCPKCGTGIYSI 123 (128)
T ss_pred cCceEEEecCCCccCc-CEecCCCCCcccce
Confidence 4568999999977666 59999999987653
No 152
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.77 E-value=32 Score=34.05 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=10.9
Q ss_pred CCCCCcccC-CcccccCC
Q 019784 292 GNLKGWSCK-FCTLDNSS 308 (336)
Q Consensus 292 ~~~~~W~C~-~CT~~N~~ 308 (336)
-..+.|.|. .|-..|..
T Consensus 349 lP~G~WICD~~C~~~~~~ 366 (381)
T KOG1512|consen 349 LPRGEWICDMRCREATLN 366 (381)
T ss_pred ccCccchhhhHHHHhcCC
Confidence 346789997 56655544
No 153
>PRK12496 hypothetical protein; Provisional
Probab=22.18 E-value=51 Score=29.48 Aligned_cols=10 Identities=40% Similarity=0.414 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q 019784 191 IQAAAMAAER 200 (336)
Q Consensus 191 re~~a~AAer 200 (336)
.+++|.|.+-
T Consensus 81 ~~~iaLA~el 90 (164)
T PRK12496 81 IEVLALALEL 90 (164)
T ss_pred HHHHHHHHHh
Confidence 3556666654
No 154
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=22.04 E-value=23 Score=37.09 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=28.2
Q ss_pred eeeecCC----CcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCc
Q 019784 59 LGINIGG----GAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEY 101 (336)
Q Consensus 59 lG~N~N~----G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~ 101 (336)
.|.|+|. |..+.+ -+.|-..|-||.--++|+.|||+|=+-
T Consensus 307 yG~~ynNAfWdG~qMvy---GDGDG~~f~~~S~sLDVvAHElTHGvt 350 (507)
T COG3227 307 YGKNYNNAFWDGDQMVY---GDGDGSFFTPFSGSLDVVAHELTHGVT 350 (507)
T ss_pred eccccccccccCceeEe---ecCCcceecccccccceehhhhcchhh
Confidence 3566653 544432 345666788999899999999999653
No 155
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=21.87 E-value=44 Score=33.00 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=26.2
Q ss_pred CceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCch
Q 019784 57 SLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNA 106 (336)
Q Consensus 57 ~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~ 106 (336)
...|+-.-.|....+..... ....+ .|++|||-||.-..|+-
T Consensus 127 ~w~Gla~v~G~~~~~~~~~~----~~~~~----~~~~HElgHN~GL~Ha~ 168 (314)
T PF05548_consen 127 GWAGLATVPGSQSWLWISGY----GVQDW----ATIMHELGHNLGLWHAG 168 (314)
T ss_pred CceEEeecCCcceeeeecCc----ccccH----HHHHHHhhhhccccccC
Confidence 34566433466665555432 11111 39999999999999984
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.74 E-value=61 Score=35.35 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 019784 21 DDARQILEKVAK 32 (336)
Q Consensus 21 ~~A~~~L~rlA~ 32 (336)
.+-+++++.+|.
T Consensus 88 ~~~~~L~~~ia~ 99 (665)
T PRK14873 88 PEIRRLARAVAD 99 (665)
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 157
>PF09569 RE_ScaI: ScaI restriction endonuclease; InterPro: IPR019069 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease ScaI, which recognises and cleaves the double-stranded sequence AGT^ACT.
Probab=21.48 E-value=59 Score=29.96 Aligned_cols=18 Identities=50% Similarity=0.785 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHhhhhh
Q 019784 81 DFFPYEQILDTMLHELCH 98 (336)
Q Consensus 81 ~f~p~~~i~~vllHELaH 98 (336)
.++|-++|+.++||||.-
T Consensus 55 dIFP~PQimGf~Lh~LI~ 72 (191)
T PF09569_consen 55 DIFPKPQIMGFFLHELIA 72 (191)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 478999999999999864
No 158
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.
Probab=21.45 E-value=58 Score=30.17 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhcCcCCCchh
Q 019784 85 YEQILDTMLHELCHNEYGPHNAD 107 (336)
Q Consensus 85 ~~~i~~vllHELaH~~~~~H~~~ 107 (336)
++.+..+++|||.|+.--.|=..
T Consensus 142 ~~R~~Kea~HElGH~~GL~HC~~ 164 (194)
T PF07998_consen 142 LERVCKEAVHELGHLFGLDHCEN 164 (194)
T ss_dssp HHHHHHHHHHHHHHHTT----SS
T ss_pred HHHHHHHHHHHHHHHcCCcCCCC
Confidence 57888999999999998888433
No 159
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=21.44 E-value=51 Score=29.84 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhcCcCCCc
Q 019784 87 QILDTMLHELCHNEYGPHN 105 (336)
Q Consensus 87 ~i~~vllHELaH~~~~~H~ 105 (336)
....|++|||-|.+-..|-
T Consensus 91 ~~~~~i~HElgHaLG~~HE 109 (198)
T cd04327 91 EFSRVVLHEFGHALGFIHE 109 (198)
T ss_pred hHHHHHHHHHHHHhcCccc
Confidence 4568999999999877664
No 160
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=21.18 E-value=56 Score=31.38 Aligned_cols=26 Identities=19% Similarity=0.588 Sum_probs=22.5
Q ss_pred CCCccCCcccccccccCccccccCCC
Q 019784 261 GQMWQCNMCTLLNQPLALTCEACGTQ 286 (336)
Q Consensus 261 ~~~W~C~~CT~~N~~~a~~C~aC~~~ 286 (336)
+..|.|..|.+.=......|..|++-
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~~~ 377 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCKAW 377 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCCCc
Confidence 34599999999999999999999865
No 161
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.03 E-value=49 Score=24.67 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=19.5
Q ss_pred ccccccCCCCcCCCCCCCCcccCCcccccCCc----Cccccc--cCCC
Q 019784 278 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSSL----SERCLA--CGEW 319 (336)
Q Consensus 278 ~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~----~~~C~~--Cg~~ 319 (336)
..|..|+.+-- .....-.|+.|...-... ...|.. |+++
T Consensus 6 ~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~ 50 (54)
T PF14446_consen 6 CKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTG 50 (54)
T ss_pred ccChhhCCccc---CCCCEEECCCCCCcccHHHHhhCCceEeccCCCC
Confidence 35777764421 123356677776544332 345555 5544
No 162
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=20.89 E-value=46 Score=35.65 Aligned_cols=18 Identities=28% Similarity=0.566 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhcCcCC
Q 019784 86 EQILDTMLHELCHNEYGP 103 (336)
Q Consensus 86 ~~i~~vllHELaH~~~~~ 103 (336)
.....|++||+||-+.||
T Consensus 286 rsl~~vIaHEIAHSWtGN 303 (613)
T KOG1047|consen 286 RSLVDVIAHEIAHSWTGN 303 (613)
T ss_pred cchhhHHHHHhhhhhccc
Confidence 345799999999988886
No 163
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=20.79 E-value=70 Score=23.89 Aligned_cols=31 Identities=23% Similarity=0.523 Sum_probs=23.2
Q ss_pred cccccCccccccCCCCcCCCCCCCCcccCCcccccCC
Q 019784 272 LNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSS 308 (336)
Q Consensus 272 ~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~ 308 (336)
++.+....|..||..+.. --.|..|+|.+.-
T Consensus 22 l~~~~l~~C~~CG~~~~~------H~vC~~CG~Y~gr 52 (57)
T PRK12286 22 LKAPGLVECPNCGEPKLP------HRVCPSCGYYKGR 52 (57)
T ss_pred ccCCcceECCCCCCccCC------eEECCCCCcCCCE
Confidence 466777789999987654 5788888887754
No 164
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=20.77 E-value=53 Score=30.04 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhhcCc
Q 019784 87 QILDTMLHELCHNEY 101 (336)
Q Consensus 87 ~i~~vllHELaH~~~ 101 (336)
.+..|++||+.|-+-
T Consensus 21 ~~l~t~~HE~gHal~ 35 (200)
T PF13398_consen 21 RLLVTFVHELGHALA 35 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455699999999753
Done!