Query 019785
Match_columns 336
No_of_seqs 217 out of 735
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0396 Uncharacterized conser 100.0 1.8E-70 3.8E-75 514.8 30.1 298 37-334 1-309 (389)
2 KOG2817 Predicted E3 ubiquitin 100.0 7.3E-35 1.6E-39 277.4 22.4 181 144-324 117-302 (394)
3 PF10607 CLTH: CTLH/CRA C-term 100.0 2.6E-33 5.6E-38 239.2 13.7 141 181-321 2-144 (145)
4 KOG2659 LisH motif-containing 99.9 2.7E-26 5.8E-31 206.5 16.6 174 143-317 26-203 (228)
5 smart00757 CRA CT11-RanBPM. pr 99.7 1.7E-18 3.7E-23 138.2 6.6 94 233-326 1-98 (99)
6 COG5109 Uncharacterized conser 99.5 5.4E-12 1.2E-16 117.5 19.1 179 144-325 101-305 (396)
7 smart00668 CTLH C-terminal to 99.3 1.3E-12 2.8E-17 94.0 5.4 55 181-235 2-56 (58)
8 smart00667 LisH Lissencephaly 97.9 3E-05 6.5E-10 48.9 4.6 32 142-173 2-33 (34)
9 PF08513 LisH: LisH; InterPro 97.7 5.3E-05 1.1E-09 46.2 4.1 27 144-170 1-27 (27)
10 KOG0293 WD40 repeat-containing 97.6 0.00061 1.3E-08 66.6 11.4 120 143-269 17-137 (519)
11 KOG1477 SPRY domain-containing 95.7 0.0036 7.8E-08 63.5 0.8 172 148-326 254-449 (469)
12 PF04494 TFIID_90kDa: WD40 ass 86.8 1.9 4E-05 36.7 6.0 48 215-262 38-85 (142)
13 PF04136 Sec34: Sec34-like fam 85.5 23 0.0005 30.6 12.6 37 195-231 103-139 (157)
14 KOG1333 Uncharacterized conser 85.3 15 0.00032 33.3 11.0 141 144-287 6-154 (241)
15 cd08044 TAF5_NTD2 TAF5_NTD2 is 82.7 2.4 5.2E-05 35.5 4.8 65 200-264 12-76 (133)
16 KOG0275 Conserved WD40 repeat- 79.3 22 0.00048 34.5 10.4 139 144-294 8-151 (508)
17 PF03962 Mnd1: Mnd1 family; I 76.9 50 0.0011 29.5 11.6 121 49-177 58-187 (188)
18 PF10607 CLTH: CTLH/CRA C-term 74.9 21 0.00045 29.7 8.3 58 149-207 7-67 (145)
19 PF07889 DUF1664: Protein of u 70.2 35 0.00075 28.6 8.2 28 56-83 38-65 (126)
20 PF14712 Snapin_Pallidin: Snap 69.7 46 0.00099 25.6 8.5 77 48-131 12-91 (92)
21 PHA01750 hypothetical protein 66.4 39 0.00085 25.0 6.8 48 53-111 26-74 (75)
22 COG1322 Predicted nuclease of 62.8 74 0.0016 32.4 10.5 71 90-160 128-215 (448)
23 PF12126 DUF3583: Protein of u 59.6 1.7E+02 0.0036 28.1 14.9 113 89-234 38-155 (324)
24 PF13805 Pil1: Eisosome compon 58.4 93 0.002 29.5 9.7 68 46-113 53-123 (271)
25 PF10154 DUF2362: Uncharacteri 58.2 39 0.00085 34.9 7.7 80 32-113 101-180 (510)
26 smart00030 CLb CLUSTERIN Beta 56.8 1.2E+02 0.0026 27.4 9.5 33 50-82 4-36 (206)
27 PF01601 Corona_S2: Coronaviru 55.4 1.1E+02 0.0023 32.3 10.2 113 48-168 239-356 (610)
28 PF09398 FOP_dimer: FOP N term 54.0 27 0.00057 27.0 4.4 33 143-175 18-50 (81)
29 PF14559 TPR_19: Tetratricopep 51.3 77 0.0017 22.0 6.4 65 191-262 2-66 (68)
30 PF11221 Med21: Subunit 21 of 50.5 1.6E+02 0.0034 25.0 10.2 75 57-131 65-142 (144)
31 PF03938 OmpH: Outer membrane 45.9 1.8E+02 0.0039 24.4 12.1 70 40-109 26-96 (158)
32 PF09755 DUF2046: Uncharacteri 44.5 2.1E+02 0.0046 27.7 9.8 86 46-131 23-119 (310)
33 PF07035 Mic1: Colon cancer-as 43.9 1.6E+02 0.0035 25.8 8.3 82 144-245 29-115 (167)
34 KOG2659 LisH motif-containing 43.6 85 0.0018 29.0 6.7 69 144-212 64-135 (228)
35 cd00632 Prefoldin_beta Prefold 41.1 1E+02 0.0023 24.4 6.3 44 38-81 47-90 (105)
36 smart00806 AIP3 Actin interact 40.9 4E+02 0.0087 27.0 12.1 105 46-150 158-292 (426)
37 PF13838 Clathrin_H_link: Clat 40.9 36 0.00079 25.2 3.2 41 220-261 7-47 (66)
38 PF05120 GvpG: Gas vesicle pro 40.4 1.7E+02 0.0036 22.5 7.3 59 50-108 7-71 (79)
39 PF06248 Zw10: Centromere/kine 40.4 4.6E+02 0.0099 27.5 15.4 33 182-214 110-142 (593)
40 PF01383 CpcD: CpcD/allophycoc 39.7 19 0.00041 25.6 1.5 23 41-64 23-45 (56)
41 PF04100 Vps53_N: Vps53-like, 39.1 4E+02 0.0087 26.4 16.4 60 54-113 25-84 (383)
42 PF12895 Apc3: Anaphase-promot 38.7 1.6E+02 0.0034 21.6 7.1 50 189-244 34-83 (84)
43 cd05804 StaR_like StaR_like; a 38.5 3.3E+02 0.0071 25.5 10.4 97 146-246 116-213 (355)
44 PF14769 CLAMP: Flagellar C1a 38.0 1.1E+02 0.0024 24.1 5.9 25 276-300 61-85 (101)
45 PF06160 EzrA: Septation ring 37.6 5E+02 0.011 27.1 15.9 47 182-228 259-305 (560)
46 PF10602 RPN7: 26S proteasome 37.6 2.8E+02 0.006 24.2 15.4 106 144-250 36-144 (177)
47 PRK10780 periplasmic chaperone 36.3 2.8E+02 0.006 23.8 10.1 70 41-110 34-104 (165)
48 smart00668 CTLH C-terminal to 36.3 49 0.0011 22.6 3.2 29 222-250 4-32 (58)
49 KOG3647 Predicted coiled-coil 35.9 2.6E+02 0.0056 26.6 8.6 70 91-160 110-191 (338)
50 PF05531 NPV_P10: Nucleopolyhe 35.1 2E+02 0.0044 21.9 7.5 54 58-112 8-61 (75)
51 PF12569 NARP1: NMDA receptor- 34.1 3.3E+02 0.0072 28.3 10.1 91 143-233 261-365 (517)
52 TIGR01837 PHA_granule_1 poly(h 33.6 2.7E+02 0.0058 22.8 10.6 33 71-103 22-54 (118)
53 PF00804 Syntaxin: Syntaxin; 33.4 1.4E+02 0.003 22.6 5.8 28 105-132 43-70 (103)
54 PF03882 KicB: KicB killing fa 33.3 5.2E+02 0.011 26.1 12.1 108 46-153 158-278 (440)
55 PF13934 ELYS: Nuclear pore co 33.1 3.8E+02 0.0082 24.4 9.9 91 144-248 78-169 (226)
56 PF07303 Occludin_ELL: Occludi 33.0 2.5E+02 0.0055 22.4 7.5 66 64-131 25-93 (101)
57 PRK11788 tetratricopeptide rep 32.8 4.4E+02 0.0094 25.0 11.8 18 229-246 224-241 (389)
58 PRK10361 DNA recombination pro 32.7 3.9E+02 0.0085 27.5 10.1 70 90-159 137-223 (475)
59 TIGR02552 LcrH_SycD type III s 32.6 2.5E+02 0.0054 22.2 8.6 56 148-206 55-111 (135)
60 KOG1854 Mitochondrial inner me 32.2 4.5E+02 0.0099 28.0 10.6 61 63-123 288-348 (657)
61 KOG1621 1D-myo-inositol-tripho 31.8 88 0.0019 31.0 5.1 59 35-113 327-385 (458)
62 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.1 3.1E+02 0.0066 22.7 9.0 80 52-131 33-118 (132)
63 PF14282 FlxA: FlxA-like prote 30.8 2.8E+02 0.0061 22.2 7.7 50 64-113 22-71 (106)
64 PF05205 COMPASS-Shg1: COMPASS 30.7 2.8E+02 0.0061 22.2 7.6 64 102-166 13-79 (106)
65 PRK15179 Vi polysaccharide bio 30.5 5.4E+02 0.012 27.8 11.3 98 144-249 86-184 (694)
66 COG5109 Uncharacterized conser 30.4 1.7E+02 0.0036 28.5 6.6 67 144-211 112-187 (396)
67 PF12569 NARP1: NMDA receptor- 30.2 5.1E+02 0.011 26.9 10.7 93 146-246 196-289 (517)
68 COG3883 Uncharacterized protei 30.2 4.8E+02 0.01 24.7 9.8 47 62-112 46-92 (265)
69 PF00627 UBA: UBA/TS-N domain; 30.0 76 0.0016 20.1 3.1 18 186-203 18-37 (37)
70 PF14691 Fer4_20: Dihydroprymi 29.9 65 0.0014 26.2 3.4 27 220-246 39-65 (111)
71 PRK13454 F0F1 ATP synthase sub 29.8 3.8E+02 0.0083 23.4 9.6 90 20-113 8-103 (181)
72 COG3937 Uncharacterized conser 29.6 3.1E+02 0.0067 22.3 8.1 39 73-111 26-64 (108)
73 PF04053 Coatomer_WDAD: Coatom 29.5 1.7E+02 0.0037 29.7 7.0 74 147-243 298-371 (443)
74 PLN02372 violaxanthin de-epoxi 29.1 5.3E+02 0.011 26.1 10.0 76 52-130 363-444 (455)
75 PF02609 Exonuc_VII_S: Exonucl 29.0 1.2E+02 0.0026 21.0 4.2 12 118-129 34-45 (53)
76 KOG0263 Transcription initiati 28.4 1.3E+02 0.0029 32.2 6.1 32 141-172 19-50 (707)
77 PF10046 BLOC1_2: Biogenesis o 27.9 3E+02 0.0066 21.6 9.1 27 56-82 2-28 (99)
78 KOG3876 Arfaptin and related p 27.5 5.4E+02 0.012 24.5 9.8 36 189-224 252-287 (341)
79 PF05508 Ran-binding: RanGTP-b 27.3 4.9E+02 0.011 25.1 9.2 65 49-114 38-105 (302)
80 PF09943 DUF2175: Uncharacteri 27.3 1E+02 0.0022 24.8 3.9 32 49-80 69-101 (101)
81 PF14276 DUF4363: Domain of un 27.2 1.3E+02 0.0027 24.4 4.7 48 181-228 29-76 (121)
82 KOG2662 Magnesium transporters 27.1 3.4E+02 0.0075 27.3 8.3 29 49-82 173-201 (414)
83 PF04840 Vps16_C: Vps16, C-ter 27.0 5.8E+02 0.013 24.6 18.3 78 151-244 184-262 (319)
84 PF01920 Prefoldin_2: Prefoldi 27.0 1.4E+02 0.003 23.1 4.8 43 39-81 47-89 (106)
85 KOG3060 Uncharacterized conser 26.7 3.8E+02 0.0081 25.5 8.1 141 139-322 50-211 (289)
86 smart00806 AIP3 Actin interact 26.1 5E+02 0.011 26.3 9.4 64 58-128 152-216 (426)
87 PF13371 TPR_9: Tetratricopept 25.7 2.2E+02 0.0047 19.9 5.3 52 191-247 6-57 (73)
88 KOG3091 Nuclear pore complex, 25.6 5.3E+02 0.012 26.6 9.5 34 49-82 333-369 (508)
89 PF10475 DUF2450: Protein of u 24.9 5.9E+02 0.013 24.0 16.4 31 182-212 129-159 (291)
90 PF12126 DUF3583: Protein of u 24.7 3.4E+02 0.0073 26.2 7.5 16 117-132 107-122 (324)
91 PF13432 TPR_16: Tetratricopep 24.7 2.4E+02 0.0051 19.3 6.7 55 150-206 3-57 (65)
92 cd00189 TPR Tetratricopeptide 24.5 2.3E+02 0.005 19.1 8.8 88 150-245 6-94 (100)
93 PLN03088 SGT1, suppressor of 24.2 5.9E+02 0.013 24.7 9.6 89 151-247 9-98 (356)
94 PF01399 PCI: PCI domain; Int 24.1 3.1E+02 0.0066 20.6 6.3 28 184-211 3-30 (105)
95 KOG2069 Golgi transport comple 23.9 8.7E+02 0.019 25.6 11.4 128 33-168 17-154 (581)
96 PTZ00196 60S ribosomal protein 23.9 1.6E+02 0.0034 23.6 4.4 41 221-261 50-92 (98)
97 PF08569 Mo25: Mo25-like; Int 23.8 5.8E+02 0.013 24.8 9.4 113 86-211 10-127 (335)
98 PF06148 COG2: COG (conserved 23.7 70 0.0015 26.5 2.6 30 46-75 22-51 (133)
99 cd00194 UBA Ubiquitin Associat 23.6 1.1E+02 0.0024 19.1 3.0 19 186-204 17-37 (38)
100 PF10827 DUF2552: Protein of u 23.5 49 0.0011 24.9 1.4 16 195-210 60-75 (79)
101 PRK05260 condesin subunit F; P 23.3 7.9E+02 0.017 24.9 12.1 119 46-164 158-289 (440)
102 PF03915 AIP3: Actin interacti 23.1 1.7E+02 0.0037 29.6 5.6 36 46-81 154-189 (424)
103 KOG4594 Sequence-specific sing 22.9 93 0.002 29.8 3.4 32 141-172 15-46 (354)
104 PF07729 FCD: FCD domain; Int 22.8 1.4E+02 0.003 22.9 4.1 29 179-207 95-123 (125)
105 PF07106 TBPIP: Tat binding pr 22.7 4.9E+02 0.011 22.3 7.9 48 60-109 85-132 (169)
106 PRK10564 maltose regulon perip 22.4 1.2E+02 0.0026 29.3 4.1 40 185-232 262-301 (303)
107 PF07139 DUF1387: Protein of u 22.2 7.2E+02 0.016 24.0 10.6 44 88-131 213-256 (302)
108 PF14966 DNA_repr_REX1B: DNA r 22.0 2.2E+02 0.0048 22.5 5.0 48 58-107 37-84 (97)
109 PF04799 Fzo_mitofusin: fzo-li 21.8 5.6E+02 0.012 22.6 8.3 18 93-110 137-154 (171)
110 PF01158 Ribosomal_L36e: Ribos 21.7 1.9E+02 0.0042 23.1 4.5 43 219-261 48-92 (98)
111 PF06676 DUF1178: Protein of u 21.6 3.6E+02 0.0078 23.2 6.5 48 50-97 74-133 (148)
112 cd07651 F-BAR_PombeCdc15_like 21.6 6.1E+02 0.013 23.0 10.2 23 60-82 103-125 (236)
113 PRK15174 Vi polysaccharide exp 21.5 9.8E+02 0.021 25.3 15.8 158 148-313 288-464 (656)
114 PF07304 SRA1: Steroid recepto 21.3 2.1E+02 0.0046 24.7 5.2 26 181-206 106-131 (157)
115 PF02813 Retro_M: Retroviral M 21.0 1.3E+02 0.0029 23.1 3.3 40 255-296 23-62 (86)
116 PF04124 Dor1: Dor1-like famil 21.0 7.5E+02 0.016 23.8 12.1 30 49-82 6-35 (338)
117 PF10552 ORF6C: ORF6C domain; 20.8 4.5E+02 0.0098 21.2 8.3 21 189-209 88-108 (116)
118 PF14823 Sirohm_synth_C: Siroh 20.7 1.3E+02 0.0029 22.3 3.3 35 94-132 3-37 (70)
119 PRK11032 hypothetical protein; 20.3 5.8E+02 0.013 22.2 9.1 36 95-130 26-62 (160)
120 PF12931 Sec16_C: Sec23-bindin 20.3 91 0.002 29.5 2.9 24 186-209 1-24 (284)
121 PHA02687 ORF061 late transcrip 20.3 4E+02 0.0086 24.0 6.6 76 25-110 137-212 (231)
122 smart00299 CLH Clathrin heavy 20.1 2.1E+02 0.0045 23.2 4.8 46 150-205 75-121 (140)
123 PRK14127 cell division protein 20.1 1.4E+02 0.0031 24.3 3.6 43 50-112 7-49 (109)
No 1
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-70 Score=514.81 Aligned_cols=298 Identities=39% Similarity=0.655 Sum_probs=284.8
Q ss_pred chhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 37 LTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS----ENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (336)
Q Consensus 37 ~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~----~~~~~~~~~~~ld~li~kl~~lkrkl~~~ 112 (336)
++|++++||++||||||.++|+||+.||.|+||+++|...++++.+. ...+.+.+++.+|.||.+++.+||++++.
T Consensus 1 ~~~~l~l~y~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~kv~~~krk~e~~ 80 (389)
T KOG0396|consen 1 MTFHLKLEYQLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRKVQCLKRKLEEY 80 (389)
T ss_pred CcchhhhhchhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999773 13458999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhh---ccCc-chhhhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 019785 113 SRTEHLQAQKCRARLNHLE---SADA-ENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVI 188 (336)
Q Consensus 113 ~~~e~~~~~~~~~Rl~~L~---~~~~-~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~ 188 (336)
++.|.+.+++|++||+|+. +.+. .+...|+++++||+|+|||+|+||+++|..|.++++|++++|+|+|.+++.|+
T Consensus 81 iq~e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~ 160 (389)
T KOG0396|consen 81 IQSEEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIR 160 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHH
Confidence 9999999999999999999 3344 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccC
Q 019785 189 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKS 268 (336)
Q Consensus 189 ~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~ 268 (336)
++|+.|++.|||.||++|+..|+|.+|.|||++|+|+|||||+.+++.+||+|||+||.||+.++.++++.+||+|||++
T Consensus 161 ~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~ 240 (389)
T KOG0396|consen 161 DSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPK 240 (389)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhcCcccHHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCCCcccC---CCCccccc
Q 019785 269 NTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSV---ICEYFCWL 334 (336)
Q Consensus 269 ~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~~C~~~---~~~~~~~~ 334 (336)
.+.+++|..+++++||+.|+++|.++++++||+|.+|+|.+.+++|+|++|||.|+.+ .+.+.|||
T Consensus 241 ~t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~~Cpv 309 (389)
T KOG0396|consen 241 YTSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSALKTPRCLNDESDNNPNNCPV 309 (389)
T ss_pred ccCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhhcccccccccccCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999987 45566776
No 2
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-35 Score=277.38 Aligned_cols=181 Identities=30% Similarity=0.599 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc--ccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDL--VDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~--~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L 221 (336)
+.||.+|+.||+|+|+.|+|+.|++|+|+... .-...|.++++|.++|+.||+++||+|+..|+.+|...+|.|||.|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~L 196 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKL 196 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHH
Confidence 44799999999999999999999999999754 3468899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCChH--HHHHHHHHhccchhhhcHHHHHHHHHHhcccCC-CCCCchhhhcCcccHHHHHHHHHHHHHHH
Q 019785 222 RLQEFIELVRGENNL--RAITYARKYLAPWGATHMKELQRVMATLAFKSN-TECTTYKALFEPKQWDFLVDQFKQEFCKL 298 (336)
Q Consensus 222 r~q~fIELir~~~~~--eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~-~~~~~y~~L~~~~rw~~L~~~F~~~~~~l 298 (336)
|.++|+++++.|+-. +||.|||+|++||+..+..|||.+|++|.|... .+.+||.+++++..|.++++.|.++||.+
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycal 276 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCAL 276 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999998655 999999999999999999999999999999766 56799999999999999999999999999
Q ss_pred hCCCCCchhHHHHHhchhccCCCCcc
Q 019785 299 YGMTLEPLLNIYLQAGLSALNTPYPY 324 (336)
Q Consensus 299 ~gl~~~s~L~~~l~aGlsaLkt~~C~ 324 (336)
+|+|.+|||.+++.||++||++...|
T Consensus 277 lg~s~eSPL~v~v~aG~~Alp~Llk~ 302 (394)
T KOG2817|consen 277 LGISVESPLSVLVNAGCIALPQLLKY 302 (394)
T ss_pred cCCCccCcHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999998876544
No 3
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=100.00 E-value=2.6e-33 Score=239.21 Aligned_cols=141 Identities=40% Similarity=0.682 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHH
Q 019785 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRV 260 (336)
Q Consensus 181 f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~ 260 (336)
|.++++|+++|++||+++|++||++|+|.|.+.++.|+|.|++|+|||||+.|+..+||+|||+++.|+...+.++++++
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~ 81 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKL 81 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999988877789999999
Q ss_pred HHHhcccCCCC--CCchhhhcCcccHHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCC
Q 019785 261 MATLAFKSNTE--CTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTP 321 (336)
Q Consensus 261 m~lLaf~~~~~--~~~y~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~ 321 (336)
|++|+|.++.. ++||++++++++|+.|++.|++++|+.+|+|.+|||+.++++|++++||.
T Consensus 82 ~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l 144 (145)
T PF10607_consen 82 MSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL 144 (145)
T ss_pred HHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence 99999999876 68999999999999999999999999999999999999999999999986
No 4
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.94 E-value=2.7e-26 Score=206.55 Aligned_cols=174 Identities=22% Similarity=0.367 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC-cccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhh
Q 019785 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQD-LVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (336)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~-~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L 221 (336)
+..+|++|++||..+||.++|+.|++++|+.. .+|.+.+.++.+|+.+|+.|++..|++.+++..|.+...+..|.|.|
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHL 105 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHH
Confidence 57899999999999999999999999999987 78999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhccchhhh---cHHHHHHHHHHhcccCCCCCCchhhhcCcccHHHHHHHHHHHHHHH
Q 019785 222 RLQEFIELVRGENNLRAITYARKYLAPWGAT---HMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKL 298 (336)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~~~~---~~~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l 298 (336)
++|+||||||+|+..+||+|+|.+++|++.. .+.+++++|++|+|.++ +.+|+..+++.++|.++|+.+++++++.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~-~~sp~~~l~~~s~R~kvA~~vN~aiL~~ 184 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELS-QESPSAELLSQSLRQKVASEVNSAILAS 184 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCc-ccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 47899999999999965 4599999999999999999999999999
Q ss_pred hCCCCCchhHHHHHhchhc
Q 019785 299 YGMTLEPLLNIYLQAGLSA 317 (336)
Q Consensus 299 ~gl~~~s~L~~~l~aGlsa 317 (336)
++....|.|..++..++.+
T Consensus 185 ~~~~~~~~l~~llk~~~~~ 203 (228)
T KOG2659|consen 185 QEHESEPKLPFLLKLISWA 203 (228)
T ss_pred hcccccchHHHHHHHHHHH
Confidence 9999999999998766655
No 5
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=99.75 E-value=1.7e-18 Score=138.17 Aligned_cols=94 Identities=37% Similarity=0.553 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHhccchhhhc---HHHHHHHHHHhcccCCCCCCchhhhcCcccHHHHHHHHHHHHHHHh-CCCCCchhH
Q 019785 233 ENNLRAITYARKYLAPWGATH---MKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLY-GMTLEPLLN 308 (336)
Q Consensus 233 ~~~~eAi~yar~~l~~~~~~~---~~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l~-gl~~~s~L~ 308 (336)
+++.+||+|||+++++|...+ .++|+++||+|||.++.+.+||+++++++||+.++++|++++|..+ |++.+|+|.
T Consensus 1 ~~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~ 80 (99)
T smart00757 1 GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLE 80 (99)
T ss_pred CcHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHH
Confidence 357899999999999999888 7899999999999987567999999999999999999999999999 999999999
Q ss_pred HHHHhchhccCCCCcccC
Q 019785 309 IYLQAGLSALNTPYPYSV 326 (336)
Q Consensus 309 ~~l~aGlsaLkt~~C~~~ 326 (336)
+++++|+.+++|..|+..
T Consensus 81 ~~~~~~~~~~~~l~~~~~ 98 (99)
T smart00757 81 ILLSAGLAALKTLLEKGG 98 (99)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999754
No 6
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=99.46 E-value=5.4e-12 Score=117.52 Aligned_cols=179 Identities=16% Similarity=0.163 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVD-IEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d-~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (336)
..++.+.-.++.+.|-..-+..++.+.|++++.. .+.|.-++.|.+.|.+.++..-++|. +-...|.+.++.+|++|.
T Consensus 101 v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtesel~l~ 179 (396)
T COG5109 101 VTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTESELELY 179 (396)
T ss_pred eeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchhhhHHH
Confidence 3466677777778887777888888999988775 58999999999999999999999999 778889998887777766
Q ss_pred HHH--HHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccCCC------C-----------------CCchhh
Q 019785 223 LQE--FIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNT------E-----------------CTTYKA 277 (336)
Q Consensus 223 ~q~--fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~~------~-----------------~~~y~~ 277 (336)
.-. +.-++-. ++++|+.|.++.++.|...|...|+..|-.|.+.+.. . .-.|.+
T Consensus 180 ~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksligqPiEdID 258 (396)
T COG5109 180 LVSHESLLLIHK-RYDEALRLCFTKLASFVPKHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIEDID 258 (396)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhcCCcHHHHH
Confidence 554 4444443 8999999999999999999999999999999985430 0 012222
Q ss_pred hcCcccHHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCCCccc
Q 019785 278 LFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYS 325 (336)
Q Consensus 278 L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~~C~~ 325 (336)
- -..-|..|...|.++||+..|+|.+|||...+.+|.+|++....+.
T Consensus 259 k-vnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~l~k~~ 305 (396)
T COG5109 259 K-VNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQLSKSG 305 (396)
T ss_pred H-hhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHHHHHhh
Confidence 1 1357999999999999999999999999999999999987766553
No 7
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=99.35 E-value=1.3e-12 Score=94.04 Aligned_cols=55 Identities=38% Similarity=0.583 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCCh
Q 019785 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENN 235 (336)
Q Consensus 181 f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~ 235 (336)
|.++.+|+++|+.|++++|++||+++++.+.+.+|.++|.|++|+||||++.|+.
T Consensus 2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 6789999999999999999999999999999999999999999999999998864
No 8
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.86 E-value=3e-05 Score=48.91 Aligned_cols=32 Identities=34% Similarity=0.689 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q 019785 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (336)
Q Consensus 142 ~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~ 173 (336)
.+..++++|.+||.++||.++|..|.+|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999875
No 9
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.74 E-value=5.3e-05 Score=46.22 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESS 170 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es 170 (336)
+.||++|.+||.++||.+||..|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 10
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.61 E-value=0.00061 Score=66.65 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhh
Q 019785 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQDL-VDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (336)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~-~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L 221 (336)
+..+-|++.+.|+..||-+++..+..|+||--. .|.. ...+.++.|++..|+.-...-.-...+......|.+
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~k------lf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv 90 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTK------LFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLV 90 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHH------HHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHH
Confidence 457789999999999999999999999998532 3444 466788999999998877666333344456788999
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccCC
Q 019785 222 RLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269 (336)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~ 269 (336)
..|.|+|+++.|++.+|+...|..+.+... +.+.+.++...|++++.
T Consensus 91 ~kQ~fLEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~ 137 (519)
T KOG0293|consen 91 NKQIFLEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSND 137 (519)
T ss_pred HHHHHHHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhcccc
Confidence 999999999999999999999977776543 56778888888887654
No 11
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=95.72 E-value=0.0036 Score=63.46 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=133.2
Q ss_pred HHHHHHHHHhChHHHHHHHHHHhCC-CCccc---HHHHH--------HHHHHHHHHHcCChHHHHHHHHhhchhhhh---
Q 019785 148 RILVDYMLRMSYYETAEKLAESSNI-QDLVD---IEVFQ--------EAKKVIDALQNKEVAPALAWCSDNKSRLKK--- 212 (336)
Q Consensus 148 rlI~dyLlR~G~~~tA~~L~~es~i-~~~~d---~e~f~--------~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k--- 212 (336)
..+..|++..|+.+++..++....- .+.+. ...+. .+.......-.+-+..+.+.|.+..+..++
T Consensus 254 ~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 333 (469)
T KOG1477|consen 254 VPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVGQ 333 (469)
T ss_pred CCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccce
Confidence 4788899999999999888765432 11111 11111 122222333457778888888888777776
Q ss_pred ----cCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhh-----hcHHHHHHHHHHhcccCCCCCCchhhhcCccc
Q 019785 213 ----SKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGA-----THMKELQRVMATLAFKSNTECTTYKALFEPKQ 283 (336)
Q Consensus 213 ----~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~-----~~~~eiq~~m~lLaf~~~~~~~~y~~L~~~~r 283 (336)
..+..-+.++++.+|.+.+.|.+...++|-+..+++... ...+.++.+++||+|.++.. ++-..++++..
T Consensus 334 ~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~-s~~g~~~~~~~ 412 (469)
T KOG1477|consen 334 VFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEE-SPVGYLLDPIQ 412 (469)
T ss_pred eecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCccc-CccccccCccc
Confidence 347888999999999999999999999999999988766 34678999999999999875 66788889999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCCCcccC
Q 019785 284 WDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSV 326 (336)
Q Consensus 284 w~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~~C~~~ 326 (336)
.+-+++..+.+.+...+.+.+++|..++. +++.|...
T Consensus 413 ~e~v~~~~n~~il~t~~~~~~~~l~~~l~------~~~~~~~~ 449 (469)
T KOG1477|consen 413 REPVAEALNSAILETDNNSKDPDLERVLS------QTPAELSL 449 (469)
T ss_pred chhHHhhhcccccccCCCCccchhhhhhc------cchhhHhh
Confidence 99999999999999999999999888886 67777554
No 12
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=86.81 E-value=1.9 Score=36.65 Aligned_cols=48 Identities=13% Similarity=0.405 Sum_probs=42.7
Q ss_pred CchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHH
Q 019785 215 SKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA 262 (336)
Q Consensus 215 s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~ 262 (336)
+.+-|=+.+.=|++||..|...+|..|..++-..+...+..+|+++.+
T Consensus 38 ~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~ 85 (142)
T PF04494_consen 38 SRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSS 85 (142)
T ss_dssp GGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 568999999999999999999999999999999998888888888865
No 13
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=85.50 E-value=23 Score=30.61 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=21.1
Q ss_pred ChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHh
Q 019785 195 EVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR 231 (336)
Q Consensus 195 di~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir 231 (336)
.++.||+++.+|...-....-.+-|+--+.+.+.|||
T Consensus 103 ~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk 139 (157)
T PF04136_consen 103 RLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIK 139 (157)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4788999999986543332223344444444444444
No 14
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.32 E-value=15 Score=33.33 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHH----HHhhchhhhhcC----C
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAW----CSDNKSRLKKSK----S 215 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W----~~~n~~~L~k~~----s 215 (336)
.++|.++-+||+=.|+..|-++|-.|...+......+=....+..+++..+|++..-+. =+...++|.... .
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~ 85 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH 85 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 67899999999999999999888877665432222111223345556667777654332 223344444432 3
Q ss_pred chhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccCCCCCCchhhhcCcccHHHH
Q 019785 216 KFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFL 287 (336)
Q Consensus 216 ~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L 287 (336)
.||-.|.+...+--|..++...|=+|.+|.-+... +..|=+.-+.+=-.+...+.+|++..|+. .|.++
T Consensus 86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq--nq~eWkDWF~fPf~~~a~~tppf~~~F~k-tw~e~ 154 (241)
T KOG1333|consen 86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ--NQAEWKDWFVLPFLPSAKDTPPFRKYFDK-TWIEI 154 (241)
T ss_pred HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh--cchhhhhheecccCCCCCCCccHHHHHHh-hhhHh
Confidence 56666777777777778888888888876433322 12222233222222333455788887754 57665
No 15
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=82.75 E-value=2.4 Score=35.54 Aligned_cols=65 Identities=11% Similarity=0.311 Sum_probs=49.0
Q ss_pred HHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHh
Q 019785 200 LAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATL 264 (336)
Q Consensus 200 L~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lL 264 (336)
-.|+.+.-..-+..=+.+-|=+.+.-|++||.+|...+|..|..++-.-+...|.++|+++.+..
T Consensus 12 ~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~ 76 (133)
T cd08044 12 RKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSIT 76 (133)
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccC
Confidence 34665552222222245889999999999999999999999999988888777888888886544
No 16
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=79.34 E-value=22 Score=34.54 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQ-DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~-~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (336)
..+-|+|.+||-.+....|-..|.+|.++. .-+| .......+|-+|.|+..|.-.+..+--- .-...|+
T Consensus 8 sdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVD-----Svd~Fv~dI~sG~WD~VL~~vqsLKLP~-----kkL~dLY 77 (508)
T KOG0275|consen 8 SDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVD-----SVDGFVNDINSGHWDTVLKTVQSLKLPD-----KKLIDLY 77 (508)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhccceeech-----hHHHHHHhcccCchHHHHHHHHhccCch-----hHHHHHH
Confidence 367799999999999999999999999875 2222 2335678899999999999887764322 2235788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhccchh--hhcHHHHHHHHHHhc--ccCCCCCCchhhhcCcccHHHHHHHHHHH
Q 019785 223 LQEFIELVRGENNLRAITYARKYLAPWG--ATHMKELQRVMATLA--FKSNTECTTYKALFEPKQWDFLVDQFKQE 294 (336)
Q Consensus 223 ~q~fIELir~~~~~eAi~yar~~l~~~~--~~~~~eiq~~m~lLa--f~~~~~~~~y~~L~~~~rw~~L~~~F~~~ 294 (336)
-|-.+|||.-.....|-..+|+-=+-.. ....+..-++-.+|. |-+| ...|.+--...|+..+++....+
T Consensus 78 EqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp--~EaY~dssKEkrRa~IAQ~ls~E 151 (508)
T KOG0275|consen 78 EQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDP--REAYGDSSKEKRRAVIAQALSGE 151 (508)
T ss_pred HHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccCh--hhhcCcchHHHHHHHHHHHhcCc
Confidence 8889999887777777777764322111 122333334444444 2232 23466644456777777665443
No 17
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.94 E-value=50 Score=29.47 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------C-CC--ChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 019785 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS------E-NF--SKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQ 119 (336)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~------~-~~--~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~ 119 (336)
.-|.+..++..+.. ..+.+++..+...+.++... + .. .....++.+..+-+.+..|+.++.......-..
T Consensus 58 sFps~~~~~~~~~~-~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 58 SFPSQAKQKRQNKL-EKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred ecChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34777777665554 34455555555555554331 1 11 123344555555555555555555333222233
Q ss_pred HHHHHHHHHhhhccCcchhhhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCccc
Q 019785 120 AQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVD 177 (336)
Q Consensus 120 ~~~~~~Rl~~L~~~~~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d 177 (336)
++..+..+..+. .....|. .---+|..|+.+. +.-....|.++.||++..|
T Consensus 137 i~~~~~~~~~~~----~~anrwT--DNI~~l~~~~~~k-~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 137 IEKLKEEIKIAK----EAANRWT--DNIFSLKSYLKKK-FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHH----HHHHHHH--hhHHHHHHHHHHh-cCCCHHHHHHHcCCccccC
Confidence 444444333332 2334562 2224677777773 2233566778899975443
No 18
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=74.85 E-value=21 Score=29.72 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=45.2
Q ss_pred HHHHHHHHhChHHHHHHHHHHhC--C-CCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhc
Q 019785 149 ILVDYMLRMSYYETAEKLAESSN--I-QDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNK 207 (336)
Q Consensus 149 lI~dyLlR~G~~~tA~~L~~es~--i-~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~ 207 (336)
-|.+.+ +.|-.+.|-..+++.. + +...+........+..+-|+.|++.+|++|+.++-
T Consensus 7 ~I~~~I-~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 7 KIRQAI-LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHHH-HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 356666 8999999988877653 2 23345677778889999999999999999999964
No 19
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.19 E-value=35 Score=28.59 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019785 56 KKTIRTNHRAVEKEITSVISNVADVSDS 83 (336)
Q Consensus 56 ~k~fr~~qk~ieke~~~v~~~~~~l~~~ 83 (336)
||++.++-..|-+.+++|...++..++.
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999887664
No 20
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=69.67 E-value=46 Score=25.63 Aligned_cols=77 Identities=16% Similarity=0.364 Sum_probs=45.4
Q ss_pred ccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 019785 48 LRVPFEHYKKTI---RTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCR 124 (336)
Q Consensus 48 ~~vP~E~l~k~f---r~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~ 124 (336)
+..|.+.+..++ +..|..+--.++.....+.++..... ..+... ++.-+.||..+|+++.... ..++.++
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~--~~~~~~-~~~y~~KL~~ikkrm~~l~----~~l~~lk 84 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQ--INEPFD-LDPYVKKLVNIKKRMSNLH----ERLQKLK 84 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHH-hhHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 344455555443 45677777777777777776654110 111112 3337778888888876664 4466778
Q ss_pred HHHHhhh
Q 019785 125 ARLNHLE 131 (336)
Q Consensus 125 ~Rl~~L~ 131 (336)
.|+.+|+
T Consensus 85 ~R~~~L~ 91 (92)
T PF14712_consen 85 KRADKLQ 91 (92)
T ss_pred HHHHhhc
Confidence 8887764
No 21
>PHA01750 hypothetical protein
Probab=66.36 E-value=39 Score=24.98 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 019785 53 EHYKKTIRTNHRA-VEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (336)
Q Consensus 53 E~l~k~fr~~qk~-ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~ 111 (336)
=-++..||.+-|. +.+|++.+...+.+++. +.|.+-+++..+|||++.
T Consensus 26 lKIKq~lkdAvkeIV~~ELdNL~~ei~~~ki-----------kqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 26 LKIKQALKDAVKEIVNSELDNLKTEIEELKI-----------KQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHhhcc
Confidence 3456667766554 45688888877777653 356677788888888753
No 22
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=62.82 E-value=74 Score=32.39 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhchHHHHHHHHHHHHHHhhhcc---------------C-cchhhhhcHHHHHHHHHH
Q 019785 90 DAVNHLTSLVSR-LQGLKRKLEEGSRTEHLQAQKCRARLNHLESA---------------D-AENLAEWNNTRVKRILVD 152 (336)
Q Consensus 90 ~~~~~ld~li~k-l~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~~---------------~-~~~~~~w~~~~l~rlI~d 152 (336)
+..+.|+.+... ++++++++++...++-+-......+|+.+... . +-....|....|.++|-+
T Consensus 128 ~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wGEv~Le~ILe~ 207 (448)
T COG1322 128 QNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWGEVQLERILED 207 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Confidence 345555555543 55667777666555544444444444333311 0 334578999999999999
Q ss_pred HHHHhChH
Q 019785 153 YMLRMSYY 160 (336)
Q Consensus 153 yLlR~G~~ 160 (336)
.+++.||.
T Consensus 208 ~gl~~~~e 215 (448)
T COG1322 208 SGLREGYE 215 (448)
T ss_pred hCchhccc
Confidence 99999984
No 23
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=59.63 E-value=1.7e+02 Score=28.13 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHH-HHHHHHHHHHHHhhhccCcchhhhhcHHHHHHHHHHHHHHhChHHHHHHHH
Q 019785 89 DDAVNHLTSLVSRLQGLKRKLEEGSRTE-HLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLA 167 (336)
Q Consensus 89 ~~~~~~ld~li~kl~~lkrkl~~~~~~e-~~~~~~~~~Rl~~L~~~~~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~L~ 167 (336)
+.+...+..+|+.++.-+|+|-+..... ..-.+.+-.++.||.. ...|-+.--.+++-|.+++
T Consensus 38 elIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~Lea-------vLqRir~G~~LVekM~~YA--------- 101 (324)
T PF12126_consen 38 ELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEA-------VLQRIRTGGALVEKMKLYA--------- 101 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHhHHHHHHHHHHhc---------
Confidence 4466778888888888888876655333 4456666677777752 2334444455555555554
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchh----hhhcCCchhHhhhHHHHHHHHhcCC
Q 019785 168 ESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR----LKKSKSKFEFQLRLQEFIELVRGEN 234 (336)
Q Consensus 168 ~es~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~----L~k~~s~LeF~Lr~q~fIELir~~~ 234 (336)
.|.+++.--.-|+++| .-+..-.|. .-+..+--||+.|+|.++.-|-+|.
T Consensus 102 --------SDQEVLdMh~FlreAL---------~rLrqeePq~lqa~V~td~F~E~k~rLQ~L~scItq~t 155 (324)
T PF12126_consen 102 --------SDQEVLDMHGFLREAL---------ERLRQEEPQNLQAAVRTDGFDEFKARLQDLVSCITQGT 155 (324)
T ss_pred --------chHHHHHHHHHHHHHH---------HHhhhhcCcccccceecccHHHHHHHHHHHHHHHhcCc
Confidence 2333333223344433 333333332 1223455689999999999998774
No 24
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=58.42 E-value=93 Score=29.51 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=32.7
Q ss_pred ccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019785 46 QFLRVPFEHYKKTIRTNHRAVE---KEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (336)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ie---ke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~~ 113 (336)
|.+--|.-.|-|.-|..-...| +|...+.+.+......++-+-.++..+|..|+..+..+.....+..
T Consensus 53 pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~ 123 (271)
T PF13805_consen 53 PELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRL 123 (271)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333 3555555666555543332334555666666666655555554443
No 25
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=58.23 E-value=39 Score=34.88 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=66.7
Q ss_pred CCCCCchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 019785 32 PKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (336)
Q Consensus 32 ~~~~~~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~ 111 (336)
.+||.++.+|.+|+...+.=-|.++++=...+|.-+|....+...+..+... .++.++......-.+..+.++.+|..
T Consensus 101 iHSpaletLL~LE~~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a~q~Lg~~--ltd~dIN~laaqH~Ee~q~ie~kw~s 178 (510)
T PF10154_consen 101 IHSPALETLLQLEHNYAKAVSELIQARDQELKKLQERQTEEMEKAMQKLGIS--LTDRDINHLAAQHFEEQQRIESKWSS 178 (510)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999888887653 55666777777778888888888876
Q ss_pred hc
Q 019785 112 GS 113 (336)
Q Consensus 112 ~~ 113 (336)
..
T Consensus 179 eL 180 (510)
T PF10154_consen 179 EL 180 (510)
T ss_pred HH
Confidence 54
No 26
>smart00030 CLb CLUSTERIN Beta chain.
Probab=56.75 E-value=1.2e+02 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 50 VPFEHYKKTIRTNHRAVEKEITSVISNVADVSD 82 (336)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~ 82 (336)
+|-+.|+.--....|.|++|+.+.+..+++++.
T Consensus 4 ~~~~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~ 36 (206)
T smart00030 4 VSDNELQEMSTQGSKYINKEIKNALKGVKQIKT 36 (206)
T ss_pred CChhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999998865
No 27
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=55.40 E-value=1.1e+02 Score=32.31 Aligned_cols=113 Identities=15% Similarity=0.235 Sum_probs=48.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH----HHHHHHHHhhhchHHHHHHHHH
Q 019785 48 LRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSR----LQGLKRKLEEGSRTEHLQAQKC 123 (336)
Q Consensus 48 ~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~k----l~~lkrkl~~~~~~e~~~~~~~ 123 (336)
+-+.-..|.+|.+..=....+-+.++...+...+. ++.++..++.. |+.|-.+|...-..=...++-+
T Consensus 239 val~t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~--------Al~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~dI 310 (610)
T PF01601_consen 239 VALQTDVLQENQKIIANSFNKAIGNIQLGFTTTAS--------ALNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQDI 310 (610)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 45566778888777777777777777766654432 45555555543 4555555555444445667788
Q ss_pred HHHHHhhhc-cCcchhhhhcHHHHHHHHHHHHHHhChHHHHHHHHH
Q 019785 124 RARLNHLES-ADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAE 168 (336)
Q Consensus 124 ~~Rl~~L~~-~~~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~L~~ 168 (336)
..||+.|.. ...+.+..-.-..||-.+.+.|.+.--......|++
T Consensus 311 y~RLd~leAdaQVDRLItGRL~aLnafVtq~l~~~~evr~sr~LA~ 356 (610)
T PF01601_consen 311 YNRLDQLEADAQVDRLITGRLAALNAFVTQQLTKYTEVRASRQLAQ 356 (610)
T ss_dssp HHHHHHHHHH------------------------------------
T ss_pred HHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888872 223333333234455555555555544444444443
No 28
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=54.00 E-value=27 Score=26.98 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc
Q 019785 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQDL 175 (336)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~ 175 (336)
...++.+|.|||--+||.-|+..|..|+|....
T Consensus 18 g~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 18 GRLINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred hHHHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 356899999999999999999999999998743
No 29
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=51.32 E-value=77 Score=22.00 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHH
Q 019785 191 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA 262 (336)
Q Consensus 191 L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~ 262 (336)
+..|+++.|++.++.--. ....+.+ ++..-..-+++.|+..+|..+..+-+....+ ..+++.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~---~~p~~~~--~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ---RNPDNPE--ARLLLAQCYLKQGQYDEAEELLERLLKQDPD--NPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH---HTTTSHH--HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT--HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH---HCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--HHHHHHHHh
Confidence 678999999998877632 2222333 3334455577889999999998865544332 245555443
No 30
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=50.50 E-value=1.6e+02 Score=24.98 Aligned_cols=75 Identities=11% Similarity=0.225 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhh
Q 019785 57 KTIRTNHRAVEKEITSVISNVADVSDSE---NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (336)
Q Consensus 57 k~fr~~qk~ieke~~~v~~~~~~l~~~~---~~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~ 131 (336)
-.|+...+.+=+.+-.-...|..|-.+. +.+.++..+.|..+-+.+....+++.+..++-+..++++...|..+.
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666655555555554432 45678888999999999999999999999888888888888877654
No 31
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=45.91 E-value=1.8e+02 Score=24.40 Aligned_cols=70 Identities=7% Similarity=0.085 Sum_probs=45.1
Q ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHHHHHHHH
Q 019785 40 ALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKL 109 (336)
Q Consensus 40 ~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~ld~li~kl~~lkrkl 109 (336)
.+.-++|..+-.-+.+++.+...++.++..-..+.....++.+.. .++.++....-..+-.+.+.+++..
T Consensus 26 ~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 26 KVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888887777777777776532 3555555444444445544444443
No 32
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.51 E-value=2.1e+02 Score=27.66 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=49.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c-C--CCChHHHHH-HHHHHHHHHHHHHHHHhh----hch
Q 019785 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD---S-E--NFSKDDAVN-HLTSLVSRLQGLKRKLEE----GSR 114 (336)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~---~-~--~~~~~~~~~-~ld~li~kl~~lkrkl~~----~~~ 114 (336)
..++.+++.|.+..+.....++.+-..+.....++.. . . ....++-.. .-+.++.||+++++.=+. ...
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999888777776666554444443333322 1 0 011111112 225677777777665433 335
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019785 115 TEHLQAQKCRARLNHLE 131 (336)
Q Consensus 115 ~e~~~~~~~~~Rl~~L~ 131 (336)
+|.-+...+.++|..|.
T Consensus 103 EEE~ltn~L~rkl~qLr 119 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLR 119 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666677777888777
No 33
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=43.93 E-value=1.6e+02 Score=25.82 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH-HcCC-hHHHHHHHHhhchhhhhcCCchhHhh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDAL-QNKE-VAPALAWCSDNKSRLKKSKSKFEFQL 221 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L-~~gd-i~~AL~W~~~n~~~L~k~~s~LeF~L 221 (336)
..+..++++-|.+.|.+..-..|.+-.=|++...+. -.| .-|. ..++...+- ++-..|
T Consensus 29 ~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA---------~~LLs~~~~~~~~~Ql~l-----------DMLkRL 88 (167)
T PF07035_consen 29 HELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLA---------CQLLSLGNQYPPAYQLGL-----------DMLKRL 88 (167)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHH---------HHHHHhHccChHHHHHHH-----------HHHHHh
Confidence 579999999999999999988888776676664322 111 1111 122222222 222222
Q ss_pred h--HHHHHH-HHhcCChHHHHHHHHHh
Q 019785 222 R--LQEFIE-LVRGENNLRAITYARKY 245 (336)
Q Consensus 222 r--~q~fIE-Lir~~~~~eAi~yar~~ 245 (336)
. --..+| |+..|++.+|+.|+|+.
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2 223445 78899999999999974
No 34
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.63 E-value=85 Score=29.01 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCC---CcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQ---DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKK 212 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~---~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k 212 (336)
..=.|+.+.+++..|-.+.|..+..+..-+ ...++..+....+.++-|+.|.++.||++....-...-+
T Consensus 64 ~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~ 135 (228)
T KOG2659|consen 64 SMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAE 135 (228)
T ss_pred hHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccccc
Confidence 344578899999999999998888775432 222234556677889999999999999999887544333
No 35
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.08 E-value=1e+02 Score=24.38 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=32.1
Q ss_pred hhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019785 38 TEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVS 81 (336)
Q Consensus 38 ~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~ 81 (336)
.-...+...|++.|.+.+..........++.++..+...+..+.
T Consensus 47 ~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 47 EVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred hHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667888888888888888887777777777666665543
No 36
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=40.92 E-value=4e+02 Score=26.98 Aligned_cols=105 Identities=12% Similarity=0.280 Sum_probs=53.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCC-------C-------hHHHHHHHHHHHHHHHHHH
Q 019785 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS-----ENF-------S-------KDDAVNHLTSLVSRLQGLK 106 (336)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~-----~~~-------~-------~~~~~~~ld~li~kl~~lk 106 (336)
..||-=+-.+|-.+...++.+..-+..|...+..++.. ++. + .+..+.++|.+-+-++.|+
T Consensus 158 ~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LR 237 (426)
T smart00806 158 KSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALR 237 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444566666666666666666666666655331 111 1 2445556666666666666
Q ss_pred HHHhhh-chHHH-------HHHHHHHHHHHhhhccCcchhhhhcH---HHHHHHH
Q 019785 107 RKLEEG-SRTEH-------LQAQKCRARLNHLESADAENLAEWNN---TRVKRIL 150 (336)
Q Consensus 107 rkl~~~-~~~e~-------~~~~~~~~Rl~~L~~~~~~~~~~w~~---~~l~rlI 150 (336)
+.+.+. ..-.. +-+..+.+.|..++++=..--+.|.+ ..|+.+.
T Consensus 238 kDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~Vc 292 (426)
T smart00806 238 KDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVC 292 (426)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 655432 11111 23445566666666432222345543 5666554
No 37
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=40.90 E-value=36 Score=25.19 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHH
Q 019785 220 QLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVM 261 (336)
Q Consensus 220 ~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m 261 (336)
.|..++|-+|+..|++.+|...|-. -+.-.-...+-|++.-
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~-sP~giLRt~~Ti~rFk 47 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN-SPRGILRTPETINRFK 47 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH-SGGGTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CccchhcCHHHHHHHH
Confidence 4688999999999999999999873 2222223445555554
No 38
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=40.42 E-value=1.7e+02 Score=22.47 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhh---cCCCChHHHHHHHHHHHHHHHHHHHH
Q 019785 50 VPFEHYKKTIRTNHRAVEKEIT---SVISNVADVSD---SENFSKDDAVNHLTSLVSRLQGLKRK 108 (336)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~---~v~~~~~~l~~---~~~~~~~~~~~~ld~li~kl~~lkrk 108 (336)
-|+--+...++.++...|+|+. .|...+.++.- .+.++.++....=+.++.+|+.+++-
T Consensus 7 aPvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~~~ 71 (79)
T PF05120_consen 7 APVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEALEAGEISEEEFERREDELLDRLEEARRR 71 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888999999999999865 44444544433 45788888989999999999988763
No 39
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=40.37 E-value=4.6e+02 Score=27.47 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhchhhhhcC
Q 019785 182 QEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK 214 (336)
Q Consensus 182 ~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~ 214 (336)
..+..+..++.+|++-.|+.++.+-+..|...+
T Consensus 110 ~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~ 142 (593)
T PF06248_consen 110 ELLEEVEEALKEGNYLDAADLLEELKSLLDDLK 142 (593)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 345667788889999999999999999888753
No 40
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=39.71 E-value=19 Score=25.64 Aligned_cols=23 Identities=13% Similarity=0.483 Sum_probs=18.4
Q ss_pred hhhccccccccHHHHHHHHHHHHH
Q 019785 41 LKLEHQFLRVPFEHYKKTIRTNHR 64 (336)
Q Consensus 41 l~le~~~~~vP~E~l~k~fr~~qk 64 (336)
-.-...++ ||||.|+..++.+++
T Consensus 23 Rrs~~~~~-Vpy~~ls~~~q~I~r 45 (56)
T PF01383_consen 23 RRSNQTYV-VPYSQLSQEMQRINR 45 (56)
T ss_dssp HHHEEEEE-EEHHHHHHHHHHHHH
T ss_pred EeeeEEEE-EcHHHhHHHHHHHHH
Confidence 44556666 999999999998876
No 41
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=39.06 E-value=4e+02 Score=26.44 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019785 54 HYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (336)
Q Consensus 54 ~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~~ 113 (336)
.+....+.-.+.++.|+......-......+..+-+++...+..+++++..+|.+.+++.
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE 84 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE 84 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666555544433222223346788889999999999999987663
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=38.67 E-value=1.6e+02 Score=21.65 Aligned_cols=50 Identities=16% Similarity=0.036 Sum_probs=30.7
Q ss_pred HHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHH
Q 019785 189 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARK 244 (336)
Q Consensus 189 ~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~ 244 (336)
-..+.|+...|+.+++. ..... .+ +..+...---+++.|+..+||.+..+
T Consensus 34 ~~~~~~~y~~A~~~~~~--~~~~~--~~--~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 34 CYFQQGKYEEAIELLQK--LKLDP--SN--PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHTTHHHHHHHHHHC--HTHHH--CH--HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH--hCCCC--CC--HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 33478999999999987 22222 22 23333334446667889999887664
No 43
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=38.52 E-value=3.3e+02 Score=25.55 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHH
Q 019785 146 VKRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (336)
Q Consensus 146 l~rlI~dyLlR~G~~~tA~~L~~es-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q 224 (336)
...+++.-+...|.++-|....++. .+. +-+......+..|. ...|+++.|++|+.+.-..... .+.+....+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~--~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~ 191 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL--EMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWH 191 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH--HHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHH
Confidence 3345667788999888887666554 332 22223333333333 3689999999999876443221 23333333333
Q ss_pred HHHHHHhcCChHHHHHHHHHhc
Q 019785 225 EFIELVRGENNLRAITYARKYL 246 (336)
Q Consensus 225 ~fIELir~~~~~eAi~yar~~l 246 (336)
.-.-++..|+..+|+.+.++.+
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHh
Confidence 3344667899999999998865
No 44
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=38.01 E-value=1.1e+02 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=21.5
Q ss_pred hhhcCcccHHHHHHHHHHHHHHHhC
Q 019785 276 KALFEPKQWDFLVDQFKQEFCKLYG 300 (336)
Q Consensus 276 ~~L~~~~rw~~L~~~F~~~~~~l~g 300 (336)
..+|+.+....+.+-|...+++.|.
T Consensus 61 ~~iFs~~~~~~i~~y~~~t~frHyk 85 (101)
T PF14769_consen 61 IGIFSVDQVKAIIDYFHNTYFRHYK 85 (101)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999887764
No 45
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=37.61 E-value=5e+02 Score=27.13 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHH
Q 019785 182 QEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (336)
Q Consensus 182 ~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE 228 (336)
..+......|.+++++.|-+...+-...+......|+=++.-.++++
T Consensus 259 ~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~ 305 (560)
T PF06160_consen 259 EQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE 305 (560)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778999999999999999888888777877777666665
No 46
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=37.57 E-value=2.8e+02 Score=24.19 Aligned_cols=106 Identities=11% Similarity=-0.022 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHH--HHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcC-CchhHh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIE--VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK-SKFEFQ 220 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e--~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~-s~LeF~ 220 (336)
.+...-+++|+++.|-.+.|.....+. .+..+... +=.-++-|+=+|..||+..+..++.+-+.-+.+.+ ......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 344567899999999888775443331 11122222 22346678889999999999999999988877733 467777
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHhccchh
Q 019785 221 LRLQEFIELVRGENNLRAITYARKYLAPWG 250 (336)
Q Consensus 221 Lr~q~fIELir~~~~~eAi~yar~~l~~~~ 250 (336)
|.+-+.+-.+..+++.+|-...-.-.+.|.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 888899999999998888877776666654
No 47
>PRK10780 periplasmic chaperone; Provisional
Probab=36.30 E-value=2.8e+02 Score=23.83 Aligned_cols=70 Identities=6% Similarity=0.076 Sum_probs=44.0
Q ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHHHHHHHHh
Q 019785 41 LKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKLE 110 (336)
Q Consensus 41 l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~ld~li~kl~~lkrkl~ 110 (336)
+..++|..+.=-..|.+.|...|+.+++....+.....++.+.. ..+.++....-..+..+-+.++++..
T Consensus 34 il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~ 104 (165)
T PRK10780 34 IFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQ 104 (165)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667766666677778888888777777777777777775532 35555555444555555555555543
No 48
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=36.28 E-value=49 Score=22.64 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=24.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhccchh
Q 019785 222 RLQEFIELVRGENNLRAITYARKYLAPWG 250 (336)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~~ 250 (336)
...++.+.|..|+..+|++++.++-++..
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~ 32 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLL 32 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHh
Confidence 35678899999999999999998766543
No 49
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.91 E-value=2.6e+02 Score=26.65 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHH----------HHHHHHHHHhhhccCcchhhhhc--HHHHHHHHHHHHHHhC
Q 019785 91 AVNHLTSLVSRLQGLKRKLEEGSRTEHLQ----------AQKCRARLNHLESADAENLAEWN--NTRVKRILVDYMLRMS 158 (336)
Q Consensus 91 ~~~~ld~li~kl~~lkrkl~~~~~~e~~~----------~~~~~~Rl~~L~~~~~~~~~~w~--~~~l~rlI~dyLlR~G 158 (336)
....+..+..+++.++.+|+....+|..+ +.+.++|+..|+++-+.-.+.|. ..+|..+---||+|.-
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~ 189 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFH 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888999999998877666533 55667778888877655444443 3567777777777765
Q ss_pred hH
Q 019785 159 YY 160 (336)
Q Consensus 159 ~~ 160 (336)
..
T Consensus 190 nl 191 (338)
T KOG3647|consen 190 NL 191 (338)
T ss_pred hH
Confidence 33
No 50
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=35.10 E-value=2e+02 Score=21.85 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (336)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~ 112 (336)
..|..-|.++.-++.+...+..+.... ....+..++||.+-.+|..+..++.+.
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888999999888887642 234556677777777777777766543
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=34.11 E-value=3.3e+02 Score=28.25 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCC---CcccHHHHHHHHHHH----HHHHcCChHHHHHHHHhhchhhhhc-C
Q 019785 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQ---DLVDIEVFQEAKKVI----DALQNKEVAPALAWCSDNKSRLKKS-K 214 (336)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~---~~~d~e~f~~~~~I~----~~L~~gdi~~AL~W~~~n~~~L~k~-~ 214 (336)
...||--.+-|++|.|..+.|...+.-.--+ ...|....+-++-+. .-.+.|++..||..+..-...-... .
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999998777654322 223333333333222 2247899999999887764443333 2
Q ss_pred CchhHhhhHH------HHHHHHhcC
Q 019785 215 SKFEFQLRLQ------EFIELVRGE 233 (336)
Q Consensus 215 s~LeF~Lr~q------~fIELir~~ 233 (336)
-.+.|.-++. -||+|++-.
T Consensus 341 DQfDFH~Yc~RK~t~r~Y~~~L~~e 365 (517)
T PF12569_consen 341 DQFDFHSYCLRKMTLRAYVDMLRWE 365 (517)
T ss_pred ccccHHHHHHhhccHHHHHHHHHHH
Confidence 3566665554 789999854
No 52
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=33.64 E-value=2.7e+02 Score=22.80 Aligned_cols=33 Identities=3% Similarity=0.020 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 019785 71 TSVISNVADVSDSENFSKDDAVNHLTSLVSRLQ 103 (336)
Q Consensus 71 ~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~ 103 (336)
......|.+|-+.+..+.+++...++.++++++
T Consensus 22 ek~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 22 EEGSKFFNRLVKEGELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 445566667766677888888888888888877
No 53
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=33.41 E-value=1.4e+02 Score=22.64 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=15.5
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHhhhc
Q 019785 105 LKRKLEEGSRTEHLQAQKCRARLNHLES 132 (336)
Q Consensus 105 lkrkl~~~~~~e~~~~~~~~~Rl~~L~~ 132 (336)
++++++....+-......|+.+|..|+.
T Consensus 43 ~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 43 LKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444566677777777763
No 54
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=33.35 E-value=5.2e+02 Score=26.06 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=64.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 019785 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS-ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCR 124 (336)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~-~~~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~ 124 (336)
..||.....+--..--.|+.++..-..|...|+.+-.. -...-......|+..-..|+.|+.-++..-.+-...+.+++
T Consensus 158 a~LkySVaeifd~Idl~QR~MDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LL~EtsgtLRELqdtL~aagd~lqa~Ll~IQ 237 (440)
T PF03882_consen 158 APLKYSVAEIFDSIDLNQRAMDEQQQSVKEEIAALLNQDWRAAIQSCEQLLDETSGTLRELQDTLEAAGDKLQAQLLRIQ 237 (440)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34566666777777788999999999999999977442 11223445566677777777777776655433333333332
Q ss_pred HH------HHhhhcc------CcchhhhhcHHHHHHHHHHH
Q 019785 125 AR------LNHLESA------DAENLAEWNNTRVKRILVDY 153 (336)
Q Consensus 125 ~R------l~~L~~~------~~~~~~~w~~~~l~rlI~dy 153 (336)
.- ++++... .-+....|.+..++-+|+.+
T Consensus 238 e~~~~~~~l~~v~~l~~~Lq~kLDrI~sWGqq~idlWigYd 278 (440)
T PF03882_consen 238 EAVMGRDELEFVDNLIFDLQMKLDRIISWGQQAIDLWIGYD 278 (440)
T ss_dssp HHHHCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1111100 02334678888888887543
No 55
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.06 E-value=3.8e+02 Score=24.40 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH-cCChHHHHHHHHhhchhhhhcCCchhHhhh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQ-NKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L~-~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (336)
..+..+=+-|++..|-++.|-.+.-+..+..- ...+|.+.|. +|+-+-|+.+...-+|.+... --
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~-------~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~-------~~ 143 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLIPW-------FPDKILQALLRRGDPKLALRYLRAVGPPLSSP-------EA 143 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCCcc-------cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH-------HH
Confidence 44555556666666777777655544333211 0113666653 688888888888877766543 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhccc
Q 019785 223 LQEFIELVRGENNLRAITYARKYLAP 248 (336)
Q Consensus 223 ~q~fIELir~~~~~eAi~yar~~l~~ 248 (336)
..-++.++..+.+.||..|+|++-.+
T Consensus 144 ~~~~~~~La~~~v~EAf~~~R~~~~~ 169 (226)
T PF13934_consen 144 LTLYFVALANGLVTEAFSFQRSYPDE 169 (226)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCchh
Confidence 22334446678888888888876654
No 56
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=33.01 E-value=2.5e+02 Score=22.37 Aligned_cols=66 Identities=9% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhh
Q 019785 64 RAVEKEITSVISNVADVSDSE---NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (336)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~~---~~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~ 131 (336)
+.+-.++..|...|.+|.... +.+..+. ..+..|+..-+.+| +-.....++..-..-++..|.||+
T Consensus 25 k~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey-~~i~~I~~eY~k~K-k~~p~y~~~K~Rc~yL~~KL~HIK 93 (101)
T PF07303_consen 25 KELHAEVDAVSRRFQELDSELKRLPPGSQEY-KRIAQILQEYNKKK-KRDPNYQEKKKRCEYLHNKLSHIK 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-TTSHHH-HHHH---HHHHHHH-HTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHH
Confidence 556677778888887775521 1222222 22225666666555 223333444454555566666665
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=32.82 E-value=4.4e+02 Score=25.03 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=11.1
Q ss_pred HHhcCChHHHHHHHHHhc
Q 019785 229 LVRGENNLRAITYARKYL 246 (336)
Q Consensus 229 Lir~~~~~eAi~yar~~l 246 (336)
+.+.|+..+|+.+.++-+
T Consensus 224 ~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 224 ALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 334567777777766544
No 58
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.72 E-value=3.9e+02 Score=27.50 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhhcc-----------------CcchhhhhcHHHHHHHHHH
Q 019785 90 DAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESA-----------------DAENLAEWNNTRVKRILVD 152 (336)
Q Consensus 90 ~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~~-----------------~~~~~~~w~~~~l~rlI~d 152 (336)
.....|.=+=++|..+++++++...++.+....++..|..|.+. ++-....|-.-.|.+++-.
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~ 216 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEA 216 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHH
Confidence 34445566668899999999999988877777777777777622 1223578988889999887
Q ss_pred HHHHhCh
Q 019785 153 YMLRMSY 159 (336)
Q Consensus 153 yLlR~G~ 159 (336)
-.++.|+
T Consensus 217 sGL~~~~ 223 (475)
T PRK10361 217 SGLREGY 223 (475)
T ss_pred hCCCcCC
Confidence 7778873
No 59
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=32.63 E-value=2.5e+02 Score=22.16 Aligned_cols=56 Identities=18% Similarity=0.041 Sum_probs=33.1
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 019785 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDN 206 (336)
Q Consensus 148 rlI~dyLlR~G~~~tA~~L~~es-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n 206 (336)
..++.-+.+.|-++.|....+.. .+. ..+.+.+..+..+. ...|+.+.|+.|...-
T Consensus 55 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~--~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 55 LGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL--LALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH--HHcCCHHHHHHHHHHH
Confidence 45566677777777776544433 333 23345544444333 3568899999988655
No 60
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=32.23 E-value=4.5e+02 Score=27.99 Aligned_cols=61 Identities=23% Similarity=0.430 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 019785 63 HRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKC 123 (336)
Q Consensus 63 qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~ 123 (336)
.+..++|+..+...+.--.+..+++.++....+--.+.++..+.+++......++..+.+.
T Consensus 288 r~~F~~EL~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~a 348 (657)
T KOG1854|consen 288 RHQFEQELESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKRA 348 (657)
T ss_pred HHHHHHHHHHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555322111122466788888888899999999999998776665544443
No 61
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=31.77 E-value=88 Score=30.99 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=43.8
Q ss_pred CCchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019785 35 TQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (336)
Q Consensus 35 ~~~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~~ 113 (336)
=+++.+.++|-. ++++||.. |-+..|+..|.+.-.. -...+..+|++|+.+++.|+.+.
T Consensus 327 FRIEgiKk~dG~--------~~~nFKkt-----rt~EqVt~~f~dF~~g-------~~~vlq~yi~rLk~mR~alE~S~ 385 (458)
T KOG1621|consen 327 FRIEGIKKLDGA--------LEKNFKKT-----RTVEQVTTTFMDFFGG-------QRSVLQQYIERLKSMRKALEHSS 385 (458)
T ss_pred eeeeehhhhcch--------hhhcchhh-----hhHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHhhhcc
Confidence 456677777764 68899988 5667788888887543 22367889999999999887764
No 62
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.10 E-value=3.1e+02 Score=22.71 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 019785 52 FEHYKKTIRTNHRAVEKEITSVISNVADVSDSE------NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRA 125 (336)
Q Consensus 52 ~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~------~~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~ 125 (336)
.+...+..+.+|...|+|+..-...+..+.... ...........+.....|...+..|..-...-..-+..++.
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345566677888888888877777666664410 01112233444455555555555555544444455666677
Q ss_pred HHHhhh
Q 019785 126 RLNHLE 131 (336)
Q Consensus 126 Rl~~L~ 131 (336)
|++-|.
T Consensus 113 r~~dL~ 118 (132)
T PF07926_consen 113 RIEDLN 118 (132)
T ss_pred HHHHHH
Confidence 766554
No 63
>PF14282 FlxA: FlxA-like protein
Probab=30.75 E-value=2.8e+02 Score=22.18 Aligned_cols=50 Identities=12% Similarity=0.325 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019785 64 RAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (336)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~~ 113 (336)
+.|.+.+..+...+.++....+++.+.....+..|-..+..|...|....
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777778878764467777788888888888888888876554
No 64
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=30.68 E-value=2.8e+02 Score=22.19 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHhhhc--cC-cchhhhhcHHHHHHHHHHHHHHhChHHHHHHH
Q 019785 102 LQGLKRKLEEGSRTEHLQAQKCRARLNHLES--AD-AENLAEWNNTRVKRILVDYMLRMSYYETAEKL 166 (336)
Q Consensus 102 l~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~--~~-~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~L 166 (336)
+..++|++-... ......+.+..|++-+-+ ++ .+....+++..+..+|-.++.|.|++..++..
T Consensus 13 FD~lRk~~l~~~-~~~~~~~~l~~~v~~~v~~~l~~~~~l~~~nk~k~~alI~~~i~rs~~~~~~e~~ 79 (106)
T PF05205_consen 13 FDKLRKECLADF-DTSPAYQNLRQRVEEIVESELERDPWLLSKNKGKARALIEGAIDRSGVYKGVERI 79 (106)
T ss_pred hHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHHhhhhhhHHHH
Confidence 445566654443 333566677777655541 11 22345566888999999999999998876544
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.49 E-value=5.4e+02 Score=27.78 Aligned_cols=98 Identities=7% Similarity=-0.127 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhh
Q 019785 144 TRVKRILVDYMLRMSYYETAEKLAES-SNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~L~~e-s~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (336)
...-+++++-+.+.|.++-|..+... ..+.+. +...+..+..|. .+.+.+++|++||+..-.. .+=...-+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L--~~~~~~eeA~~~~~~~l~~-----~p~~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGV--KRQQGIEAGRAEIELYFSG-----GSSSAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHH--HHhccHHHHHHHHHHHhhc-----CCCCHHHH
Confidence 46668899999999999888766544 233321 223333333332 3568899999999877432 23334455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhccch
Q 019785 223 LQEFIELVRGENNLRAITYARKYLAPW 249 (336)
Q Consensus 223 ~q~fIELir~~~~~eAi~yar~~l~~~ 249 (336)
.+.-+.|...|...+|+.+.++-+.+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 677788888899999999888888654
No 66
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=30.41 E-value=1.7e+02 Score=28.52 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhC--hHHH------HHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhh
Q 019785 144 TRVKRILVDYMLRMS--YYET------AEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLK 211 (336)
Q Consensus 144 ~~l~rlI~dyLlR~G--~~~t------A~~L~~es-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~ 211 (336)
.+.+.++.-|+++.. ..+. -..|.+-. ||.+. +.-.|+++.+|+..|..|+++.+++||.--...|.
T Consensus 112 ~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k-~~~l~iE~~Qi~gyl~kgdtesel~l~~~~~esl~ 187 (396)
T COG5109 112 NNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEK-STFLLIEFLQIEGYLSKGDTESELELYLVSHESLL 187 (396)
T ss_pred hhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccc-hhHhHHHHHHhcCccccCCchhhhHHHHHHHHHHH
Confidence 567778888988874 3222 23444444 88644 35668888899999999999999999975544433
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=30.24 E-value=5.1e+02 Score=26.88 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHH
Q 019785 146 VKRILVDYMLRMSYYETAEKLAESSNIQ-DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (336)
Q Consensus 146 l~rlI~dyLlR~G~~~tA~~L~~es~i~-~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q 224 (336)
+.-++++|.-+.|.++.|-.+..+. |+ .+.-+|.|....+|.. ..|++..|.+|.+.-+.- ...+--| -.-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~a-I~htPt~~ely~~KarilK--h~G~~~~Aa~~~~~Ar~L-D~~DRyi----NsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKA-IEHTPTLVELYMTKARILK--HAGDLKEAAEAMDEAREL-DLADRYI----NSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhC-ChhhHHH----HHH
Confidence 5567899999999999998887653 33 2233677776666655 579999999999887642 1111000 000
Q ss_pred HHHHHHhcCChHHHHHHHHHhc
Q 019785 225 EFIELVRGENNLRAITYARKYL 246 (336)
Q Consensus 225 ~fIELir~~~~~eAi~yar~~l 246 (336)
----++|.|++.+|..-+..+-
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhc
Confidence 1112778899988888776443
No 68
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.24 E-value=4.8e+02 Score=24.71 Aligned_cols=47 Identities=13% Similarity=0.339 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 62 NHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (336)
Q Consensus 62 ~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~ 112 (336)
.++.++.|++.+...+.++.+. .++..+.++.+=..+..++.++.+.
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k----~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSK----IDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554332 2223444444444455555554433
No 69
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=30.05 E-value=76 Score=20.10 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.1
Q ss_pred HHHHHHH--cCChHHHHHHH
Q 019785 186 KVIDALQ--NKEVAPALAWC 203 (336)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~ 203 (336)
..+.+|+ +||++.|++|+
T Consensus 18 ~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHhC
Confidence 4667774 58999999995
No 70
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=29.93 E-value=65 Score=26.19 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHhc
Q 019785 220 QLRLQEFIELVRGENNLRAITYARKYL 246 (336)
Q Consensus 220 ~Lr~q~fIELir~~~~~eAi~yar~~l 246 (336)
.+..+.||.+|+.|+..+|++.+++..
T Consensus 39 ~~dip~~i~~i~~g~~~~A~~~i~~~n 65 (111)
T PF14691_consen 39 HIDIPEYIRLIREGNFKEAYELIREDN 65 (111)
T ss_dssp ---HHHHHHHHHCT-HHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 456799999999999999999998643
No 71
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=29.78 E-value=3.8e+02 Score=23.45 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhccc-----cccccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 019785 20 PTPAAAGGMTPFPKLTQLTEALKLEHQ-----FLRVPFEHYKKT-IRTNHRAVEKEITSVISNVADVSDSENFSKDDAVN 93 (336)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~le~~-----~~~vP~E~l~k~-fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~ 93 (336)
++.+++...-|++.-|.+|...-..+- .|=|=|=.|+|- |+-+.+.|+.--..|.+.+.+..+. ..++..
T Consensus 8 ~~~~~~~~~~~~~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~----~~eA~~ 83 (181)
T PRK13454 8 AAAAAAGHAASAPGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEEL----KQKAVE 83 (181)
T ss_pred hhccccccccCCCCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHH
Confidence 344444444455556655553211111 123333334443 5556666666666666655554332 223344
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 019785 94 HLTSLVSRLQGLKRKLEEGS 113 (336)
Q Consensus 94 ~ld~li~kl~~lkrkl~~~~ 113 (336)
.+...-++|...+.+..+..
T Consensus 84 ~~~eye~~L~~Ar~EA~~ii 103 (181)
T PRK13454 84 AEKAYNKALADARAEAQRIV 103 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555544444433
No 72
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=29.61 E-value=3.1e+02 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 019785 73 VISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (336)
Q Consensus 73 v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~ 111 (336)
+...+.++-+.+.++.+++...++.++...+.-+..+++
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~ 64 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEE 64 (108)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344445666667899999999999999988855544443
No 73
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=29.46 E-value=1.7e+02 Score=29.72 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHH
Q 019785 147 KRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (336)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (336)
-.-|+.||-..||.+.|-.|+++ ...+..=+|.-|+++.|++-+.+.... ....|=.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-------------~~~rFeLAl~lg~L~~A~~~a~~~~~~----------~~W~~Lg 354 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-------------PDHRFELALQLGNLDIALEIAKELDDP----------EKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS--------------HHHHHHHHHHCT-HHHHHHHCCCCSTH----------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-------------hHHHhHHHHhcCCHHHHHHHHHhcCcH----------HHHHHHH
Confidence 56688999999999999988643 134677789999999999988766421 1344445
Q ss_pred HHHHhcCChHHHHHHHH
Q 019785 227 IELVRGENNLRAITYAR 243 (336)
Q Consensus 227 IELir~~~~~eAi~yar 243 (336)
-+-+++|+..-|-.+.+
T Consensus 355 ~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHTTBHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 56677888888877776
No 74
>PLN02372 violaxanthin de-epoxidase
Probab=29.13 E-value=5.3e+02 Score=26.11 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHH--HHHHHHHHHHHHh----hhchHHHHHHHHHHH
Q 019785 52 FEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTS--LVSRLQGLKRKLE----EGSRTEHLQAQKCRA 125 (336)
Q Consensus 52 ~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~--li~kl~~lkrkl~----~~~~~e~~~~~~~~~ 125 (336)
.|.|-|.-....|.|.||+..+...+.+-... + .......++. +-+.+..|+...+ +..++|.+.++.++.
T Consensus 363 ~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~ 439 (455)
T PLN02372 363 LERLEKDVEEGEKTIVKEARQIEEELEKEVEK--L-GKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKM 439 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 68888888899999999966666555531110 0 0112223333 5666666666544 344555666666666
Q ss_pred HHHhh
Q 019785 126 RLNHL 130 (336)
Q Consensus 126 Rl~~L 130 (336)
++...
T Consensus 440 ~~~~v 444 (455)
T PLN02372 440 EASEV 444 (455)
T ss_pred HHHHH
Confidence 55433
No 75
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=29.04 E-value=1.2e+02 Score=21.04 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHh
Q 019785 118 LQAQKCRARLNH 129 (336)
Q Consensus 118 ~~~~~~~~Rl~~ 129 (336)
++++.|+.+|+.
T Consensus 34 ~l~~~c~~~L~~ 45 (53)
T PF02609_consen 34 ELIKKCQERLEE 45 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 76
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.37 E-value=1.3e+02 Score=32.20 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=28.4
Q ss_pred hcHHHHHHHHHHHHHHhChHHHHHHHHHHhCC
Q 019785 141 WNNTRVKRILVDYMLRMSYYETAEKLAESSNI 172 (336)
Q Consensus 141 w~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i 172 (336)
.....+|+++.+||.+.||..+-..+.++.++
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l 50 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANL 50 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcc
Confidence 34678999999999999999999999999775
No 77
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.86 E-value=3e+02 Score=21.63 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 56 KKTIRTNHRAVEKEITSVISNVADVSD 82 (336)
Q Consensus 56 ~k~fr~~qk~ieke~~~v~~~~~~l~~ 82 (336)
.+-|-.+.+.|+-|+......+.-+.+
T Consensus 2 ~~~f~~~~~~v~~el~~t~~d~~LLe~ 28 (99)
T PF10046_consen 2 ERMFSKVSKYVESELEATNEDYNLLEN 28 (99)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356777888888888888777776644
No 78
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=27.55 E-value=5.4e+02 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHH
Q 019785 189 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (336)
Q Consensus 189 ~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q 224 (336)
.++-.+-+..|-+-|.+++.+-.|..++.-.+++++
T Consensus 252 ~~~t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfL 287 (341)
T KOG3876|consen 252 DALTKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFL 287 (341)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344567788888999999998888888887776544
No 79
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=27.33 E-value=4.9e+02 Score=25.11 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=50.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCChHHHHHHHHHHHHHHHHHHHHHhhhch
Q 019785 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVS---DSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSR 114 (336)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~---~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~~~ 114 (336)
+||=+.. +..+..|+.+|.-+..|..++.-++ ..|+.+-+.++...+.+-.-++.+-+++++...
T Consensus 38 ~ip~~~~-~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~ 105 (302)
T PF05508_consen 38 KIPDKDR-KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREIDSFDERLEEAAE 105 (302)
T ss_pred hCCHHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776 8899999999999999888877442 245777778888888888888888888776655
No 80
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=27.28 E-value=1e+02 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=26.3
Q ss_pred cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019785 49 RVPF-EHYKKTIRTNHRAVEKEITSVISNVADV 80 (336)
Q Consensus 49 ~vP~-E~l~k~fr~~qk~ieke~~~v~~~~~~l 80 (336)
+++= |.+++..++..|.+|+....+++.+.++
T Consensus 69 ~~~~~ee~k~~~~q~rK~~Ek~Aa~LT~~i~~~ 101 (101)
T PF09943_consen 69 RLAESEEVKKVLRQVRKDLEKNAAKLTRKIEKL 101 (101)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444 8999999999999999999988877653
No 81
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=27.19 E-value=1.3e+02 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHH
Q 019785 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (336)
Q Consensus 181 f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE 228 (336)
-.....|.+++.++|++.|-.-+.+-...-.+....+.|-+..+++=.
T Consensus 29 ~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~ 76 (121)
T PF14276_consen 29 EEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDN 76 (121)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHH
Confidence 355678999999999999999999999999998888888888887744
No 82
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=27.12 E-value=3.4e+02 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD 82 (336)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~ 82 (336)
..||| ||+..-.+|-=.+.+...+.++..
T Consensus 173 ~lPFE-----FrALE~aLe~~~s~L~~~~~~Le~ 201 (414)
T KOG2662|consen 173 ELPFE-----FRALEVALEAACSFLDSRLSELET 201 (414)
T ss_pred CCchH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666 566555555555555555555543
No 83
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=27.05 E-value=5.8e+02 Score=24.61 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=54.7
Q ss_pred HHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHH-H
Q 019785 151 VDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE-L 229 (336)
Q Consensus 151 ~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE-L 229 (336)
+..|+..|....|+.+.++.+|.+-- | -.-+|.--...|+|+.--.|... .+|++=|+ -|++ +
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkr----f-w~lki~aLa~~~~w~eL~~fa~s-------kKsPIGye----pFv~~~ 247 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKR----F-WWLKIKALAENKDWDELEKFAKS-------KKSPIGYE----PFVEAC 247 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHH----H-HHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChH----HHHHHH
Confidence 45667789899999999999986321 1 23356666678999988887653 24776666 4555 3
Q ss_pred HhcCChHHHHHHHHH
Q 019785 230 VRGENNLRAITYARK 244 (336)
Q Consensus 230 ir~~~~~eAi~yar~ 244 (336)
++.|...+|..|..+
T Consensus 248 ~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK 262 (319)
T ss_pred HHCCCHHHHHHHHHh
Confidence 346788889888886
No 84
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.02 E-value=1.4e+02 Score=23.12 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=33.8
Q ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019785 39 EALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVS 81 (336)
Q Consensus 39 ~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~ 81 (336)
-...+...|++.|.+.+......-.+.++.++..+......+.
T Consensus 47 ~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 47 VYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777899999999999988888888888888776665543
No 85
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.66 E-value=3.8e+02 Score=25.55 Aligned_cols=141 Identities=18% Similarity=0.243 Sum_probs=81.5
Q ss_pred hhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHH--HHHHHHHHH---HcCChHHHHHHHHhhchhhhhc
Q 019785 139 AEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQ--EAKKVIDAL---QNKEVAPALAWCSDNKSRLKKS 213 (336)
Q Consensus 139 ~~w~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~--~~~~I~~~L---~~gdi~~AL~W~~~n~~~L~k~ 213 (336)
+.| .+...+.--.+..|-.+.|..-.++..- .|- .+-.+..++ ..|+.+.|++..+.. ..
T Consensus 50 e~w---~l~EqV~IAAld~~~~~lAq~C~~~L~~-------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~l----L~- 114 (289)
T KOG3060|consen 50 EIW---TLYEQVFIAALDTGRDDLAQKCINQLRD-------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESL----LE- 114 (289)
T ss_pred hHH---HHHHHHHHHHHHhcchHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHH----hc-
Confidence 456 4555555556666767777644443211 121 122233443 368888888876443 22
Q ss_pred CCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccCCCCCCchhhhcCcccHHHHHHHHH-
Q 019785 214 KSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFK- 292 (336)
Q Consensus 214 ~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~- 292 (336)
+.+..|-.|..+.+-+--.|+..+||+-..+++-.|. .|++.|.++++.|.
T Consensus 115 ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~----------------------------~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 115 DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM----------------------------NDQEAWHELAEIYLS 166 (289)
T ss_pred cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc----------------------------CcHHHHHHHHHHHHh
Confidence 2367777888777777777888888877776654442 36788999988653
Q ss_pred -----H-HHH--H-HhCCCCCchhHHH------HHhchhccCCCC
Q 019785 293 -----Q-EFC--K-LYGMTLEPLLNIY------LQAGLSALNTPY 322 (336)
Q Consensus 293 -----~-~~~--~-l~gl~~~s~L~~~------l~aGlsaLkt~~ 322 (336)
+ .|| . +.--|.+|..|.. .++|...+.+..
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2 344 1 3345666666543 455655544433
No 86
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=26.07 E-value=5e+02 Score=26.30 Aligned_cols=64 Identities=8% Similarity=0.261 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHH-HhhhchHHHHHHHHHHHHHH
Q 019785 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRK-LEEGSRTEHLQAQKCRARLN 128 (336)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrk-l~~~~~~e~~~~~~~~~Rl~ 128 (336)
.+..--..+.+|+..+-..-..- ..+....+..+.++++.+|.- +.-+......++..++++|+
T Consensus 152 ~~~~el~~lrrdLavlRQ~~~~~-------~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~ 216 (426)
T smart00806 152 EQRAELKSLQRELAVLRQTHNSF-------FTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLS 216 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHH
Confidence 34444455566665544333222 334667788888888888874 33333455567777777765
No 87
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=25.74 E-value=2.2e+02 Score=19.93 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=39.9
Q ss_pred HHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhcc
Q 019785 191 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 247 (336)
Q Consensus 191 L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~ 247 (336)
+.+++++.|+++++.--. .+ +-...++.+.-.-+.+.|+..+|+.+..+.+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~----~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALE----LD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHHH----hC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 578999999998876532 22 22667777788888889999999999987664
No 88
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.64 E-value=5.3e+02 Score=26.63 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q 019785 49 RVPFEHYKKTIRTNHRAVEK---EITSVISNVADVSD 82 (336)
Q Consensus 49 ~vP~E~l~k~fr~~qk~iek---e~~~v~~~~~~l~~ 82 (336)
-|=||-|+++.+.---.+.. -+++|.+.+.+|.+
T Consensus 333 vvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk 369 (508)
T KOG3091|consen 333 VVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQK 369 (508)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34478888775532222211 23444445555544
No 89
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.93 E-value=5.9e+02 Score=23.97 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhchhhhh
Q 019785 182 QEAKKVIDALQNKEVAPALAWCSDNKSRLKK 212 (336)
Q Consensus 182 ~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k 212 (336)
..-..|...|..||...||+-|.+...-+..
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~ 159 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQLLEE 159 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 3344677777888888888888887766543
No 90
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=24.70 E-value=3.4e+02 Score=26.16 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhc
Q 019785 117 HLQAQKCRARLNHLES 132 (336)
Q Consensus 117 ~~~~~~~~~Rl~~L~~ 132 (336)
.+...-++..|.+|..
T Consensus 107 LdMh~FlreAL~rLrq 122 (324)
T PF12126_consen 107 LDMHGFLREALERLRQ 122 (324)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4556666777777773
No 91
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=24.68 E-value=2.4e+02 Score=19.32 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 019785 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDN 206 (336)
Q Consensus 150 I~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n 206 (336)
.+..++..|-++.|....++.=-..+-+.+....+..|.. ..|+.+.|++|..+-
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY--QQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence 4566778888888876665542222334444444444433 678888888877654
No 92
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=24.54 E-value=2.3e+02 Score=19.11 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=42.9
Q ss_pred HHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHH
Q 019785 150 LVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (336)
Q Consensus 150 I~dyLlR~G~~~tA~~L~~es-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE 228 (336)
++..+.+.|.++.|..+.++. .+.+ .+...+..+..+ ....|+.+.|++++..-...... .. ..+...-.-
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~~~~ 77 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAA--YYKLGKYEEALEDYEKALELDPD-NA----KAYYNLGLA 77 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCc-ch----hHHHHHHHH
Confidence 455566677777666555443 3322 122222222222 23458888888888664322111 11 222222223
Q ss_pred HHhcCChHHHHHHHHHh
Q 019785 229 LVRGENNLRAITYARKY 245 (336)
Q Consensus 229 Lir~~~~~eAi~yar~~ 245 (336)
+...|+..+|+.+.++-
T Consensus 78 ~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 78 YYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 34456677777776643
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=24.22 E-value=5.9e+02 Score=24.68 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=51.7
Q ss_pred HHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHH
Q 019785 151 VDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIEL 229 (336)
Q Consensus 151 ~dyLlR~G~~~tA~~L~~es-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIEL 229 (336)
+.-+++.|.++.|..+..+. .+. ..+...+..+.. -.+..|+.+.|+..+..--. +. .. ....+....+-+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~--~~~~~g~~~eAl~~~~~Al~-l~---P~-~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQ--ANIKLGNFTEAVADANKAIE-LD---PS-LAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHH-hC---cC-CHHHHHHHHHHH
Confidence 55667777777776555443 332 233444433333 33567899999988766521 21 11 122344445556
Q ss_pred HhcCChHHHHHHHHHhcc
Q 019785 230 VRGENNLRAITYARKYLA 247 (336)
Q Consensus 230 ir~~~~~eAi~yar~~l~ 247 (336)
...|++.+|+.+.++-+.
T Consensus 81 ~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 81 MKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 667888999888886554
No 94
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=24.06 E-value=3.1e+02 Score=20.64 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhchhhh
Q 019785 184 AKKVIDALQNKEVAPALAWCSDNKSRLK 211 (336)
Q Consensus 184 ~~~I~~~L~~gdi~~AL~W~~~n~~~L~ 211 (336)
+.++.+++..||+....+++..+...+.
T Consensus 3 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 30 (105)
T PF01399_consen 3 YSELLRAFRSGDLQEFEEFLEKHSESLF 30 (105)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999954444
No 95
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.93 E-value=8.7e+02 Score=25.61 Aligned_cols=128 Identities=14% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCCCchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 33 KLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (336)
Q Consensus 33 ~~~~~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~ 112 (336)
.+|.++.-+. .+.--|||.++|. +-.+--|...+.....++.-.+--.-.++-...+.+.+-+...+++....
T Consensus 17 ~~~~~~~~v~---~l~~~~~e~l~ke----~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l 89 (581)
T KOG2069|consen 17 NSPEMDAYVR---ELTTKPLEELRKE----KALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKEL 89 (581)
T ss_pred cCchhHHHHH---HHcCCcHHHHHhh----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 4444444332 2446789999886 22366677777777777755321122224555566666666666666655
Q ss_pred chHHHHHHHHHHHHHHhhhccCc----------chhhhhcHHHHHHHHHHHHHHhChHHHHHHHHH
Q 019785 113 SRTEHLQAQKCRARLNHLESADA----------ENLAEWNNTRVKRILVDYMLRMSYYETAEKLAE 168 (336)
Q Consensus 113 ~~~e~~~~~~~~~Rl~~L~~~~~----------~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~L~~ 168 (336)
.....++...|++=.++..+++. ..-..|.--++-++ ++-..|.||++-|-.|++
T Consensus 90 ~l~~~~L~s~~~~f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~l-M~~cir~~~~~ealel~a 154 (581)
T KOG2069|consen 90 SLQLPELTSPCKRFQDFAEEISEHRRLNSLTLDKHPQLLELLELPQL-MDRCIRNGYYDEALELAA 154 (581)
T ss_pred HHhhHHhhhHHHHHHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHH-HHHHHHhhhhhhHHHHHH
Confidence 55444444555444444433321 11123443333333 346779999988766653
No 96
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=23.91 E-value=1.6e+02 Score=23.61 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHhccchhhh--cHHHHHHHH
Q 019785 221 LRLQEFIELVRGENNLRAITYARKYLAPWGAT--HMKELQRVM 261 (336)
Q Consensus 221 Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~--~~~eiq~~m 261 (336)
=+-...+|||+.|+---|+.|+++-+..+.-. ..+|++.+.
T Consensus 50 PYErr~mELLkv~kdKrAlKfaKkRlGth~RaK~Kreel~~vl 92 (98)
T PTZ00196 50 PYERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDEIQEAL 92 (98)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34567899999999899999999998766432 235555443
No 97
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.83 E-value=5.8e+02 Score=24.85 Aligned_cols=113 Identities=12% Similarity=0.241 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhhccC-cchhhhhcHHHHHHHHHHHHHHhChHHHHH
Q 019785 86 FSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESAD-AENLAEWNNTRVKRILVDYMLRMSYYETAE 164 (336)
Q Consensus 86 ~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~~~-~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~ 164 (336)
-++.+.++.+.+.+.++. ........+....+.+.+..++.+= .+....|..+.+..+. .=+++.|.. .
T Consensus 10 KtP~ElVr~l~e~L~~L~------~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa-~Ei~~~dll---~ 79 (335)
T PF08569_consen 10 KTPAELVRSLREALEKLD------SKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLA-QEIYRSDLL---Y 79 (335)
T ss_dssp --HHHHHHHHHHHHHHHH------SS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHH-HHHHHHTHH---H
T ss_pred CCHHHHHHHHHHHHHHhc------cccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHH-HHHHHhCHH---H
Confidence 456677777777777764 1112222334444555555555321 2223456666654433 334455433 2
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHcCC----hHHHHHHHHhhchhhh
Q 019785 165 KLAESSNIQDLVDIEVFQEAKKVIDALQNKE----VAPALAWCSDNKSRLK 211 (336)
Q Consensus 165 ~L~~es~i~~~~d~e~f~~~~~I~~~L~~gd----i~~AL~W~~~n~~~L~ 211 (336)
.|.. .+. ..|.|.=.....|...+.+++ ..|+.+|+..|+|++.
T Consensus 80 ~Li~--~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil 127 (335)
T PF08569_consen 80 LLIR--NLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEIL 127 (335)
T ss_dssp HHHH--TGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHH
T ss_pred HHHH--Hhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHH
Confidence 2322 121 234555555556666665433 2268888888866543
No 98
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=23.67 E-value=70 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019785 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVIS 75 (336)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~ 75 (336)
..=.+|.|.|++-.+...+.++.++-.+++
T Consensus 22 ~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN 51 (133)
T PF06148_consen 22 NRRYVSLEDLRKDLRSYSKELKNELIELIN 51 (133)
T ss_dssp ------------------------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999998866554
No 99
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=23.58 E-value=1.1e+02 Score=19.11 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=14.5
Q ss_pred HHHHHHH--cCChHHHHHHHH
Q 019785 186 KVIDALQ--NKEVAPALAWCS 204 (336)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~~ 204 (336)
+++.+|. +||++.|++|+-
T Consensus 17 ~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 17 EARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHhCCCHHHHHHHHh
Confidence 4666663 689999999974
No 100
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=23.52 E-value=49 Score=24.86 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=13.2
Q ss_pred ChHHHHHHHHhhchhh
Q 019785 195 EVAPALAWCSDNKSRL 210 (336)
Q Consensus 195 di~~AL~W~~~n~~~L 210 (336)
-++.|++|+.+|.+.+
T Consensus 60 tld~Ai~Wi~e~M~~i 75 (79)
T PF10827_consen 60 TLDLAIAWIGEHMPHI 75 (79)
T ss_pred cHHHHHHHHHhcccch
Confidence 4678999999998764
No 101
>PRK05260 condesin subunit F; Provisional
Probab=23.27 E-value=7.9e+02 Score=24.88 Aligned_cols=119 Identities=12% Similarity=0.175 Sum_probs=68.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 019785 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCR 124 (336)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~ 124 (336)
..||.....+--..--.|+.++-.-..|...|+++-... ...-......|+.+-..|+.|+.-+...-.+=...+.+++
T Consensus 158 a~LkySVaeifd~Idl~QR~mDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LLdEtsgtLRELqdtL~aagD~lqaqLl~IQ 237 (440)
T PRK05260 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQ 237 (440)
T ss_pred hcCcCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445666677777777788999999899988888774320 0112234566677777777777777655433222222222
Q ss_pred HH------HHhhhcc------CcchhhhhcHHHHHHHHHHHHHHhChHHHHH
Q 019785 125 AR------LNHLESA------DAENLAEWNNTRVKRILVDYMLRMSYYETAE 164 (336)
Q Consensus 125 ~R------l~~L~~~------~~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~ 164 (336)
.- ++++.+. ..+....|.+..++-+|+.+=.-+-|.-+|.
T Consensus 238 ~~~~~~~~l~~vd~~~~~Lq~kLDRI~sWGqqaidlWigYdrhVHkfIRtaI 289 (440)
T PRK05260 238 DATMGRDDLDFVDRLVFDLQSKLDRIISWGQQAIDLWIGYDRHVHKFIRTAI 289 (440)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 2222210 0234568999999888865544444455543
No 102
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=23.08 E-value=1.7e+02 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019785 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVS 81 (336)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~ 81 (336)
..+|-=.-.||.-+...++.+...+..+...+..+.
T Consensus 154 ~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k 189 (424)
T PF03915_consen 154 QSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVK 189 (424)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566666666666666666666555443
No 103
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=22.90 E-value=93 Score=29.78 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=27.8
Q ss_pred hcHHHHHHHHHHHHHHhChHHHHHHHHHHhCC
Q 019785 141 WNNTRVKRILVDYMLRMSYYETAEKLAESSNI 172 (336)
Q Consensus 141 w~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i 172 (336)
-.|++|...|-+||++-|-..+|+.|..|...
T Consensus 15 qArekLa~YvYEYLlhvgaqksaqtflseirw 46 (354)
T KOG4594|consen 15 QAREKLALYVYEYLLHVGAQKSAQTFLSEIRW 46 (354)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 35689999999999999999999999987543
No 104
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=22.84 E-value=1.4e+02 Score=22.88 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHhhc
Q 019785 179 EVFQEAKKVIDALQNKEVAPALAWCSDNK 207 (336)
Q Consensus 179 e~f~~~~~I~~~L~~gdi~~AL~W~~~n~ 207 (336)
.....-.+|.++|.+||.+.|-+++.+|-
T Consensus 95 ~~~~~h~~i~~ai~~~d~~~a~~~~~~h~ 123 (125)
T PF07729_consen 95 RSLEEHREIIDAIRAGDPEAAREALRQHI 123 (125)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34566778999999999999999998773
No 105
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.65 E-value=4.9e+02 Score=22.27 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 019785 60 RTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKL 109 (336)
Q Consensus 60 r~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl 109 (336)
+.--..+..++..+...++.+.+. ++.++....+..+-+.+..++.++
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~--~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSE--PTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345556666666666666543 455555555555444444444443
No 106
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.35 E-value=1.2e+02 Score=29.27 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhc
Q 019785 185 KKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG 232 (336)
Q Consensus 185 ~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~ 232 (336)
+.|.++++.||++.||...+|-+. |=+.==++-||.-|+.
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~--------LG~~~Ar~tFik~V~~ 301 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAER--------LGSTSARSTFISSVKG 301 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------hCCchHHHHHHHHhhc
Confidence 579999999999999999998732 2222335556666553
No 107
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=22.21 E-value=7.2e+02 Score=24.01 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhh
Q 019785 88 KDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (336)
Q Consensus 88 ~~~~~~~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~ 131 (336)
+++++..|+.=-++...|||.-+-+..-.+..+..+++-|.||-
T Consensus 213 K~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 213 KAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence 45566667766677777777766666555555666666677665
No 108
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=22.05 E-value=2.2e+02 Score=22.54 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 019785 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKR 107 (336)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkr 107 (336)
.||+.-+.|..++..+...+.++.+.. ..+.....+..+|..|+...+
T Consensus 37 ~y~~~~~~iT~~f~~~S~ei~~ie~~L--~~~~~~~~la~~i~~lQ~~Ek 84 (97)
T PF14966_consen 37 AYRQLCHEITQEFSAISKEILAIEAEL--RDEHERPDLAELIRELQEQEK 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccCCHHHHHHHHHHHHHHH
Confidence 466777777778877777777776531 111122345566666665433
No 109
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.78 E-value=5.6e+02 Score=22.61 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019785 93 NHLTSLVSRLQGLKRKLE 110 (336)
Q Consensus 93 ~~ld~li~kl~~lkrkl~ 110 (336)
..|+.+..+...||.|..
T Consensus 137 ~~le~~~~~~k~LrnKa~ 154 (171)
T PF04799_consen 137 QRLEEIQSKSKTLRNKAN 154 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555543
No 110
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=21.67 E-value=1.9e+02 Score=23.12 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=31.1
Q ss_pred HhhhHHHHHHHHhcCChHHHHHHHHHhccchhhh--cHHHHHHHH
Q 019785 219 FQLRLQEFIELVRGENNLRAITYARKYLAPWGAT--HMKELQRVM 261 (336)
Q Consensus 219 F~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~--~~~eiq~~m 261 (336)
|-=+-.+.+|||+.++---|+.|+++-+...... ..+|++.++
T Consensus 48 faPYEkr~mELlkv~kdKrAlKf~KKRlGth~RAKrKrEel~~vl 92 (98)
T PF01158_consen 48 FAPYEKRAMELLKVSKDKRALKFAKKRLGTHIRAKRKREELSNVL 92 (98)
T ss_dssp HCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4445567899999999999999999988765431 245555443
No 111
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=21.65 E-value=3.6e+02 Score=23.22 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------CCCChHHHHHHHHH
Q 019785 50 VPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS------------ENFSKDDAVNHLTS 97 (336)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~------------~~~~~~~~~~~ld~ 97 (336)
.+...+.+..+..++.|+++.+.|-..|++=... +..+.+++...+++
T Consensus 74 ~~~~~~~~~l~~~~~~v~~n~e~VG~~FAeEAR~iHyGea~~R~I~G~at~eE~~~L~eE 133 (148)
T PF06676_consen 74 EPPAELEAALRKLRRHVEKNSEDVGDRFAEEARKIHYGEAEERGIYGEATPEEAKELIEE 133 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHcCCCccccCcCcCCHHHHHHHHHc
Confidence 6788899999999999999999999999854331 24566777666553
No 112
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.62 E-value=6.1e+02 Score=22.95 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 019785 60 RTNHRAVEKEITSVISNVADVSD 82 (336)
Q Consensus 60 r~~qk~ieke~~~v~~~~~~l~~ 82 (336)
|..+-.+++-.......+..+.+
T Consensus 103 K~~~~~~~k~~k~~~~~~~~l~K 125 (236)
T cd07651 103 KKIQSHMEKLLKKKQDQEKYLEK 125 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345655555555555544
No 113
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=21.52 E-value=9.8e+02 Score=25.33 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=82.2
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHH
Q 019785 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (336)
Q Consensus 148 rlI~dyLlR~G~~~tA~~L~~es-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (336)
..++..+.+.|.++.|....++. .+. +.+.+....+.. -....|+.+.|++.+..--. .......+. ...-
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~--~l~~~G~~~eA~~~l~~al~---~~P~~~~~~--~~~a 359 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR--ALRQVGQYTAASDEFVQLAR---EKGVTSKWN--RYAA 359 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH--HHHHCCCHHHHHHHHHHHHH---hCccchHHH--HHHH
Confidence 34566677777776665444432 222 112222222222 22357889999888754321 111222222 2222
Q ss_pred HHHHhcCChHHHHHHHHHhccchhhh---cHHH-HHHHHHHhcc-cCCCCC-Cchhhh-c-----C------cccHHHHH
Q 019785 227 IELVRGENNLRAITYARKYLAPWGAT---HMKE-LQRVMATLAF-KSNTEC-TTYKAL-F-----E------PKQWDFLV 288 (336)
Q Consensus 227 IELir~~~~~eAi~yar~~l~~~~~~---~~~e-iq~~m~lLaf-~~~~~~-~~y~~L-~-----~------~~rw~~L~ 288 (336)
.-+...|+..+|+.+.++.+...... +..+ +...-..+.- +.+... -=..++ + | -.+|..|+
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWERRAKWGYLA 439 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHHHHHhhHHH
Confidence 33456799999999988765543221 1222 1112222221 111110 000111 1 1 25899999
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHh
Q 019785 289 DQFKQEFCKLYGMTLEPLLNIYLQA 313 (336)
Q Consensus 289 ~~F~~~~~~l~gl~~~s~L~~~l~a 313 (336)
+-|.-+++..-|=+.+.||...+..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (656)
T PRK15174 440 DNFLLDWLECRGEQADEPMYRLADI 464 (656)
T ss_pred HHHHHHHHHhcccchhhHHHHHhhh
Confidence 9999999999999999888876554
No 114
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=21.33 E-value=2.1e+02 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhh
Q 019785 181 FQEAKKVIDALQNKEVAPALAWCSDN 206 (336)
Q Consensus 181 f~~~~~I~~~L~~gdi~~AL~W~~~n 206 (336)
|..+.+|.-+|....+++|=.|.---
T Consensus 106 ~~~A~~Ih~~L~t~h~~E~~~WmvGV 131 (157)
T PF07304_consen 106 YDAADEIHVDLMTDHVDECGNWMVGV 131 (157)
T ss_dssp HHHHHHHHHHHHHSSHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHhccHHHhhhHHHHH
Confidence 56666677777766777766665443
No 115
>PF02813 Retro_M: Retroviral M domain; InterPro: IPR004028 The Gag polyprotein directs the assembly and release of virus particles from infected cells. The Gag polyprotein has three domains required for activity: an N-terminal membrane-binding (M) domain that directs Gag to the plasma membrane, an interaction (I) domain involved in Gag aggregation, and a late assembly (L) domain that mediates the budding process []. During viral maturation, the Gag polyprotein is then cleaved into major structural proteins by the viral protease, yielding the matrix, capsid, nucleoprotein, and some smaller peptides. In Rous sarcoma virus (RSV), the M domain consists of the first 85 residues of the matrix protein. However, unlike other Gag polyproteins, the M domain of RSV Gag is not myristylated, but retains full activity [].This domain forms an alpha helical bundle structure []. This entry represents the M domain of the Gag polyprotein found in avian retroviruses. This entry also identifies Gag polyproteins from several avian endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; PDB: 1A6S_A.
Probab=20.98 E-value=1.3e+02 Score=23.06 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcccCCCCCCchhhhcCcccHHHHHHHHHHHHH
Q 019785 255 KELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFC 296 (336)
Q Consensus 255 ~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~~~~ 296 (336)
+||--+..+|--..... +| .++|++.+|+.+...|.+-..
T Consensus 23 Kei~a~Ls~L~~Eg~L~-sP-sdi~~~~~Wd~~Ta~lsQram 62 (86)
T PF02813_consen 23 KEIGAMLSLLQKEGLLT-SP-SDIYSPGSWDPITAALSQRAM 62 (86)
T ss_dssp SHHHHHHHTGGGTT-TT--G-GGGGSTTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHccCcC-Ch-hhccCCCcchHHHHHHHHHHH
Confidence 45665555554332222 44 789999999999888866443
No 116
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=20.95 E-value=7.5e+02 Score=23.79 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=19.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD 82 (336)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~ 82 (336)
.-|||.|.+ ---.++.+...+...+.++..
T Consensus 6 s~~l~~L~~----Ep~~L~~~~~~l~~ql~~La~ 35 (338)
T PF04124_consen 6 SLSLESLFS----EPQSLSEEIASLDAQLQSLAF 35 (338)
T ss_pred cCCHHHHHh----hHHHHHHHHHHHHHHHHHHHH
Confidence 457777776 445566677777777776654
No 117
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=20.83 E-value=4.5e+02 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.9
Q ss_pred HHHHcCChHHHHHHHHhhchh
Q 019785 189 DALQNKEVAPALAWCSDNKSR 209 (336)
Q Consensus 189 ~~L~~gdi~~AL~W~~~n~~~ 209 (336)
.+|...|.+.|+++++.+.|.
T Consensus 88 ~~I~~kdfd~A~~~I~~W~p~ 108 (116)
T PF10552_consen 88 KDIPRKDFDEALEFINNWEPS 108 (116)
T ss_pred HhhhHHHHHHHHHHHHHcCCC
Confidence 456778899999999888774
No 118
>PF14823 Sirohm_synth_C: Sirohaem biosynthesis protein C-terminal; PDB: 1KYQ_B.
Probab=20.65 E-value=1.3e+02 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhhc
Q 019785 94 HLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLES 132 (336)
Q Consensus 94 ~ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~ 132 (336)
.+...|++|..|++++-+..... ...++|..-++.
T Consensus 3 ~~g~AIe~vG~LR~~LR~~ap~~----~~~~~RM~Wm~~ 37 (70)
T PF14823_consen 3 NLGEAIENVGELRSRLREVAPDP----EDGKRRMRWMSQ 37 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHS-SC----CCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHH
Confidence 35677888999999888765433 344555544443
No 119
>PRK11032 hypothetical protein; Provisional
Probab=20.33 E-value=5.8e+02 Score=22.22 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH-HHhh
Q 019785 95 LTSLVSRLQGLKRKLEEGSRTEHLQAQKCRAR-LNHL 130 (336)
Q Consensus 95 ld~li~kl~~lkrkl~~~~~~e~~~~~~~~~R-l~~L 130 (336)
++.+|++....-....+..++|...+...-+| |.++
T Consensus 26 l~~~ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef 62 (160)
T PRK11032 26 IDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEF 62 (160)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444554444444333 4443
No 120
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=20.32 E-value=91 Score=29.47 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=19.4
Q ss_pred HHHHHHHcCChHHHHHHHHhhchh
Q 019785 186 KVIDALQNKEVAPALAWCSDNKSR 209 (336)
Q Consensus 186 ~I~~~L~~gdi~~AL~W~~~n~~~ 209 (336)
+|.+.|..||.+.|+++|-+++-.
T Consensus 1 ~I~~~Ll~G~~~~Av~~al~~~~w 24 (284)
T PF12931_consen 1 KIQQLLLVGNREEAVELALDNGLW 24 (284)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-H
T ss_pred CHHHHHhCCCHHHHHHHHHHCCCh
Confidence 588999999999999999888653
No 121
>PHA02687 ORF061 late transcription factor VLTF-4; Provisional
Probab=20.28 E-value=4e+02 Score=23.96 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q 019785 25 AGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQG 104 (336)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~ 104 (336)
+.+.++|....+.|+.=.+|.+-|+|-++.+-+-||. |..-++.|...+.++... .+......|+.-|..
T Consensus 137 ~~~~as~rspsd~dn~D~md~SDLklAt~~IikDlK~----Ln~RVsAlSTVLeDVQAa------sIsRqFtsL~KaI~e 206 (231)
T PHA02687 137 AEGGASGRSPSDDDNLDEMDDSDLMLAFSAILADFKD----LTGRVKALSSVLTDVQAS------GVRRSFSGLGKALTE 206 (231)
T ss_pred ccccccCCCCCCCccccccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3344444444455666679999999999999998875 445566777777766543 144556666666666
Q ss_pred HHHHHh
Q 019785 105 LKRKLE 110 (336)
Q Consensus 105 lkrkl~ 110 (336)
++--..
T Consensus 207 Lk~lA~ 212 (231)
T PHA02687 207 AAAIAA 212 (231)
T ss_pred HHHHHh
Confidence 654443
No 122
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=20.14 E-value=2.1e+02 Score=23.22 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHc-CChHHHHHHHHh
Q 019785 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQN-KEVAPALAWCSD 205 (336)
Q Consensus 150 I~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L~~-gdi~~AL~W~~~ 205 (336)
++..+.+.|+++.+..+....|.-.. -|.-.|.. +|.+.|+++|..
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~~~~----------Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGNFKD----------AIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcCHHH----------HHHHHHHcccCHHHHHHHHHh
Confidence 45556666777666666555443211 12233344 789999999987
No 123
>PRK14127 cell division protein GpsB; Provisional
Probab=20.07 E-value=1.4e+02 Score=24.26 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785 50 VPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (336)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lkrkl~~~ 112 (336)
.|-+..+|.|+..-| ..+.+++..-||.+++-++.+.++....
T Consensus 7 Tp~DI~~KeF~~~~R--------------------GYd~~EVD~FLd~V~~dye~l~~e~~~L 49 (109)
T PRK14127 7 TPKDILEKEFKTSMR--------------------GYDQDEVDKFLDDVIKDYEAFQKEIEEL 49 (109)
T ss_pred CHHHHhhCccCCCCC--------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777764422 3556666777777776666665555433
Done!