Query 019786
Match_columns 336
No_of_seqs 141 out of 1614
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:04:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.0 1.2E-05 4.2E-10 66.7 7.8 59 265-323 46-105 (137)
2 3b5d_A Multidrug transporter E 98.0 1.9E-05 6.4E-10 63.0 7.8 72 60-170 33-105 (110)
3 2i68_A Protein EMRE; transmemb 97.8 2.1E-05 7.2E-10 65.3 5.7 71 60-169 33-104 (137)
4 3b5d_A Multidrug transporter E 97.6 0.00028 9.6E-09 56.1 9.2 56 267-322 48-104 (110)
5 3l1l_A Arginine/agmatine antip 30.8 74 0.0025 29.6 6.1 22 304-325 409-430 (445)
6 2rdd_B UPF0092 membrane protei 16.3 2E+02 0.0067 17.4 3.8 14 312-325 11-24 (37)
7 2lkg_A Acetylcholine receptor; 6.3 3.6E+02 0.012 21.4 3.1 19 93-112 71-89 (140)
8 4dx5_A Acriflavine resistance 5.9 1.6E+03 0.055 23.5 8.8 38 279-317 368-405 (1057)
9 1u7g_A Probable ammonium trans 5.7 1.6E+03 0.054 20.8 23.0 74 134-210 243-317 (385)
10 3b9w_A Ammonium transporter fa 5.4 1.7E+03 0.059 20.8 20.1 54 134-189 220-274 (407)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.03 E-value=1.2e-05 Score=66.69 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=41.2
Q ss_pred HHHhHhhccChhHHHHH-HHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHhhhhh
Q 019786 265 LATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 323 (336)
Q Consensus 265 ~~~~~l~~~s~~~~si~-~~l~~v~~~i~~~~~fge~~s~~~~~G~~li~~gv~~~~~~~ 323 (336)
....++++.++...... ..+.|+++.++|+++|||++|..+++|++++++|+.+.+..+
T Consensus 46 l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567899999877666 899999999999999999999999999999999999887643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.99 E-value=1.9e-05 Score=63.03 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhhhhhhccccchhhhhhh-ccccccccccCchhHHHHHHHHhhhhhhhhHHHHHhhhhcchhhHHHHH
Q 019786 60 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAA 138 (336)
Q Consensus 60 ~~~~~~~~~~~~~~~~~sl~~~~vs~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~~~ 138 (336)
.+...++++++..+...++++.+++.+..+ . ++.|+++++
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~---------------------------------------g~~~v~~~l 73 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWS---------------------------------------GVGIVLISL 73 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHh---------------------------------------hHHHHHHHH
Confidence 355566778888999999999999999888 7 999999999
Q ss_pred HHHHHhcCcCChhhHHHHHHHhhhheeeeccc
Q 019786 139 ASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 170 (336)
Q Consensus 139 ~~~l~l~~~~~~~~~~sl~~~~~Gv~l~~~~~ 170 (336)
.+.+++||+++..+++++.++++|+......+
T Consensus 74 ~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 74 LSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999876544
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.82 E-value=2.1e-05 Score=65.29 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhhhhhhccccchhhhhhh-ccccccccccCchhHHHHHHHHhhhhhhhhHHHHHhhhhcchhhHHHHH
Q 019786 60 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAA 138 (336)
Q Consensus 60 ~~~~~~~~~~~~~~~~~sl~~~~vs~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~~~ 138 (336)
.+...++++++..+.+.++++++++.+..+ . ++.|+++++
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~---------------------------------------~l~pv~~~l 73 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWS---------------------------------------GVGIVLISL 73 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHH---------------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHH---------------------------------------HHHHHHHHH
Confidence 355666788889999999999999998888 7 999999999
Q ss_pred HHHHHhcCcCChhhHHHHHHHhhhheeeecc
Q 019786 139 ASQFILGQQLPLTLWLSLAPVVIGVSMASLT 169 (336)
Q Consensus 139 ~~~l~l~~~~~~~~~~sl~~~~~Gv~l~~~~ 169 (336)
++++++||+++..++++++++++|+.++...
T Consensus 74 ~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 74 LSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.62 E-value=0.00028 Score=56.10 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=49.7
Q ss_pred HhHhhccChhHHHHH-HHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHhhhh
Q 019786 267 TNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 322 (336)
Q Consensus 267 ~~~l~~~s~~~~si~-~~l~~v~~~i~~~~~fge~~s~~~~~G~~li~~gv~~~~~~ 322 (336)
..++|+.+..+.... ..+.|+.+.+.++++|||++|..+++|++++++|+...+..
T Consensus 48 ~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456788888877665 78999999999999999999999999999999999987754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=30.82 E-value=74 Score=29.62 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhHH
Q 019786 304 QTGIGTVIAIAGVAAYSYIKAQ 325 (336)
Q Consensus 304 ~~~~G~~li~~gv~~~~~~~~~ 325 (336)
....|..+...|..+|...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456888888999888765543
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=16.25 E-value=2e+02 Score=17.40 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=5.4
Q ss_pred HHHHHHHhhhhhHH
Q 019786 312 AIAGVAAYSYIKAQ 325 (336)
Q Consensus 312 i~~gv~~~~~~~~~ 325 (336)
++.++..+-..|.+
T Consensus 11 ~~~~ifYFl~iRPQ 24 (37)
T 2rdd_B 11 VFGLIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhhH
Confidence 33444433333333
No 7
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=6.33 E-value=3.6e+02 Score=21.40 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.3
Q ss_pred cccccccCchhHHHHHHHHh
Q 019786 93 IWHYADQGENHFILSMSLLL 112 (336)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ 112 (336)
-|-|.|.|| ++.+|...+.
T Consensus 71 F~Lp~dsge-Rvslgit~lL 89 (140)
T 2lkg_A 71 FYLPTDSGE-KMTESKSVLK 89 (140)
T ss_dssp SSSCCSSSH-HHHHHHHHHH
T ss_pred eEcCCCCCC-EEEEeeehHH
Confidence 477788765 8888887766
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=5.86 E-value=1.6e+03 Score=23.47 Aligned_cols=38 Identities=29% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHH
Q 019786 279 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVA 317 (336)
Q Consensus 279 si~~~l~~v~~~i~~~~~fge~~s~~~~~G~~li~~gv~ 317 (336)
.++...-.+...+....++|.++|..+.+|.++. .|+.
T Consensus 368 ~~~~ip~~~~~~~~~l~~~g~~ln~~sl~gl~~~-iGi~ 405 (1057)
T 4dx5_A 368 PTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLA-IGLL 405 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH-eecc
Confidence 3344444455666677788999999999887766 4543
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=5.75 E-value=1.6e+03 Score=20.80 Aligned_cols=74 Identities=9% Similarity=-0.032 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCcCChhhHHHHHHHhhhheeeeccccccc-HHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHH
Q 019786 134 FFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFN-WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAY 210 (336)
Q Consensus 134 i~~~~~~~l~l~~~~~~~~~~sl~~~~~Gv~l~~~~~~~~~-~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~l~~~ 210 (336)
+..++.+++ .++|++......- .++|.+-+.......+ +...+..+++++..-....+.|+..+-.||......
T Consensus 243 l~~~~~~~~-~~gk~~~~~~~nG--~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD~l~a~~v 317 (385)
T 1u7g_A 243 LGWIFGEWA-LRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGV 317 (385)
T ss_dssp HHHHHHHHH-HHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHH
T ss_pred HHHHHHHHH-HcCCCCHHHHHHH--HHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCCEee
Confidence 335556665 4567887766533 2334443332222333 344455555555544433333333344455554433
No 10
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=5.37 E-value=1.7e+03 Score=20.78 Aligned_cols=54 Identities=6% Similarity=-0.047 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCcCChhhHHHHHHHhhhheeeeccccccc-HHHHHHHHHHHHHHH
Q 019786 134 FFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFN-WTGFISAMISNISFT 189 (336)
Q Consensus 134 i~~~~~~~l~l~~~~~~~~~~sl~~~~~Gv~l~~~~~~~~~-~~G~l~~l~s~~~~a 189 (336)
+..++++++..++|++......- .++|.+-+...-...+ +...+..+++++..-
T Consensus 220 l~~~~~~~~~~~gK~~~~~~~nG--~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~ 274 (407)
T 3b9w_A 220 LATYFLSALFHKGKASIVDMANA--ALAGGVAIGSVCNIVGPVGAFVIGLLGGAISV 274 (407)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHH--TTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHh--hhhhhheeccCCCCCCHHHHHHHHHHHHHHHH
Confidence 33455666656678888766544 3344444333222233 333445555544433
Done!