Query 019786
Match_columns 336
No_of_seqs 141 out of 1614
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 07:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019786.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019786hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 12.6 3.3E+02 0.024 21.9 13.6 11 136-146 196-206 (447)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 12.0 94 0.0068 16.4 2.6 25 119-149 4-28 (30)
3 d1iwga8 f.35.1.1 (A:513-566,A: 9.2 3.8E+02 0.028 20.5 9.5 31 287-318 95-125 (222)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 8.4 5.4E+02 0.04 21.6 23.1 71 137-210 243-315 (383)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 8.3 4E+02 0.029 20.0 10.2 50 270-319 60-109 (199)
6 d1wiga2 g.39.1.3 (A:33-73) Act 6.5 57 0.0041 19.0 0.2 9 91-99 20-28 (41)
7 d1oedb_ f.36.1.1 (B:) Acetylch 5.3 1.5E+02 0.011 23.2 2.4 18 94-112 24-41 (250)
8 d1pv7a_ f.38.1.2 (A:) Lactose 4.8 6.5E+02 0.048 19.0 8.0 10 10-19 28-37 (417)
9 d1oedc_ f.36.1.1 (C:) Acetylch 4.7 1.6E+02 0.012 22.9 2.2 18 94-112 24-41 (260)
10 d2e74g1 f.23.26.1 (G:9-35) Pet 4.2 2.9E+02 0.021 14.0 2.6 19 176-194 3-21 (27)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.65 E-value=3.3e+02 Score=21.89 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=4.9
Q ss_pred HHHHHHHHhcC
Q 019786 136 NAAASQFILGQ 146 (336)
Q Consensus 136 ~~~~~~l~l~~ 146 (336)
..++.+.+.+|
T Consensus 196 ~~~~~~~~~~~ 206 (447)
T d1pw4a_ 196 VALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHhccc
Confidence 34444444443
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.04 E-value=94 Score=16.37 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=12.5
Q ss_pred hHHHHHhhhhcchhhHHHHHHHHHHhcCcCC
Q 019786 119 LFFIYWFYFFSALEPFFNAAASQFILGQQLP 149 (336)
Q Consensus 119 ~~~~~~~~~~~~~~Pi~~~~~~~l~l~~~~~ 149 (336)
+..++.|+++.++. +-.++++|+|.
T Consensus 4 i~yv~ifac~i~lf------ffaiffreppr 28 (30)
T d2axtt1 4 ITYVFIFACIIALF------FFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHH------HHHHHTSCCCC
T ss_pred eehHHHHHHHHHHH------HHHHHhcCCCC
Confidence 34455555544332 33456677654
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=3.8e+02 Score=20.48 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCchhhhHHHHHHHHHHHH
Q 019786 287 VFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 318 (336)
Q Consensus 287 v~~~i~~~~~fge~~s~~~~~G~~li~~gv~~ 318 (336)
+...+.+..+.|.+++....+|.++. .|+..
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l-~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTT-IGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccch-hhhhh
Confidence 34556677788999999998888876 44443
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.35 E-value=5.4e+02 Score=21.63 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=32.7
Q ss_pred HHHHHHHhcCcCChhhHHHHHHHhhhheeeecccccccHHH-HHHHHHHH-HHHHHHHHHHhhhhcCCChhhHHHH
Q 019786 137 AAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTG-FISAMISN-ISFTYRSIYSKKAMTDMDSTNIYAY 210 (336)
Q Consensus 137 ~~~~~l~l~~~~~~~~~~sl~~~~~Gv~l~~~~~~~~~~~G-~l~~l~s~-~~~a~~~v~~k~~~~~~~~~~l~~~ 210 (336)
......+.++|++......- .++|.+-++......++.+ .+...+++ +++-.+..+.+|. +-.||......
T Consensus 243 ~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~~~~~~v 315 (383)
T d1u7ga_ 243 WIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFGV 315 (383)
T ss_dssp HHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-ccccccceEee
Confidence 33334456677877765532 2345444433333334343 45555544 3343444443333 43455544433
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.25 E-value=4e+02 Score=19.96 Aligned_cols=50 Identities=24% Similarity=0.130 Sum_probs=35.4
Q ss_pred hhccChhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHh
Q 019786 270 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 319 (336)
Q Consensus 270 l~~~s~~~~si~~~l~~v~~~i~~~~~fge~~s~~~~~G~~li~~gv~~~ 319 (336)
.+...+.........-.+........++|.+++..+..+..+.+....-+
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 35455555556666666777777788899999999988888776555533
No 6
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.46 E-value=57 Score=19.04 Aligned_cols=9 Identities=44% Similarity=0.829 Sum_probs=6.0
Q ss_pred ccccccccc
Q 019786 91 GEIWHYADQ 99 (336)
Q Consensus 91 ~~~~~~~~~ 99 (336)
+++|||.-+
T Consensus 20 s~IWHP~C~ 28 (41)
T d1wiga2 20 SSIWHPACR 28 (41)
T ss_dssp TEEECTTHH
T ss_pred CceeCCccc
Confidence 368998643
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.31 E-value=1.5e+02 Score=23.17 Aligned_cols=18 Identities=44% Similarity=0.597 Sum_probs=14.2
Q ss_pred ccccccCchhHHHHHHHHh
Q 019786 94 WHYADQGENHFILSMSLLL 112 (336)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ 112 (336)
|-|.|.|| ++.+|+++++
T Consensus 24 ~~p~~~~e-r~~l~it~lL 41 (250)
T d1oedb_ 24 YLPPDAGE-KMSLSISALL 41 (250)
T ss_dssp HHHHHCGG-GHHHHHHHHH
T ss_pred eecCCCCC-cEEeeHHHHH
Confidence 56678866 8999888877
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=6.5e+02 Score=19.04 Aligned_cols=10 Identities=0% Similarity=-0.011 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 019786 10 NILNKRIYNY 19 (336)
Q Consensus 10 ~i~nK~~~~~ 19 (336)
.++..++-++
T Consensus 28 ~~l~~~l~~~ 37 (417)
T d1pv7a_ 28 PFFPIWLHDI 37 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3444444443
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.70 E-value=1.6e+02 Score=22.95 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.0
Q ss_pred ccccccCchhHHHHHHHHh
Q 019786 94 WHYADQGENHFILSMSLLL 112 (336)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ 112 (336)
|-|.|.|| ++.+|.++++
T Consensus 24 ~lp~~~~~-r~~l~it~lL 41 (260)
T d1oedc_ 24 YLPAESGE-KMSTAISVLL 41 (260)
T ss_dssp HHHHHCTT-CHHHHHHHHH
T ss_pred eeCCCCCC-cEEeeHHHHH
Confidence 66777766 8888888777
No 10
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.23 E-value=2.9e+02 Score=14.04 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019786 176 TGFISAMISNISFTYRSIY 194 (336)
Q Consensus 176 ~G~l~~l~s~~~~a~~~v~ 194 (336)
.|.+.+-++++.||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5777888888888887654
Done!