Query 019787
Match_columns 336
No_of_seqs 206 out of 1325
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.4E-33 4.6E-38 230.5 9.2 105 11-117 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.4E-33 8.3E-38 230.6 8.5 104 14-119 1-104 (107)
3 3osg_A MYB21; transcription-DN 100.0 6.9E-33 2.3E-37 234.2 9.5 106 8-116 5-110 (126)
4 3zqc_A MYB3; transcription-DNA 100.0 2.6E-32 8.9E-37 231.8 10.8 105 14-120 2-106 (131)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1.2E-32 4.1E-37 232.7 8.4 107 8-116 21-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.5E-30 5E-35 227.1 8.3 108 8-117 52-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2E-29 6.9E-34 219.9 5.4 105 11-117 3-108 (159)
8 2dim_A Cell division cycle 5-l 99.8 1.3E-21 4.3E-26 149.5 1.7 67 8-76 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.2E-20 4.1E-25 159.1 5.7 76 41-117 1-77 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 1.3E-18 4.4E-23 161.3 6.5 107 9-116 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 2.5E-18 8.7E-23 133.3 5.3 59 55-114 10-68 (73)
12 2cu7_A KIAA1915 protein; nucle 99.7 4.3E-17 1.5E-21 125.2 8.1 59 62-120 3-61 (72)
13 2din_A Cell division cycle 5-l 99.7 6.3E-17 2.2E-21 122.1 7.3 60 61-121 2-61 (66)
14 2d9a_A B-MYB, MYB-related prot 99.6 1.5E-16 5E-21 117.8 5.6 56 63-118 3-59 (60)
15 2d9a_A B-MYB, MYB-related prot 99.6 5.8E-17 2E-21 120.0 2.7 57 9-67 3-59 (60)
16 2juh_A Telomere binding protei 99.6 4.5E-17 1.5E-21 137.5 2.0 84 8-92 11-103 (121)
17 1gvd_A MYB proto-oncogene prot 99.6 9.6E-17 3.3E-21 115.6 2.6 52 12-65 1-52 (52)
18 1guu_A C-MYB, MYB proto-oncoge 99.6 7.6E-16 2.6E-20 110.8 6.3 50 66-115 1-51 (52)
19 2roh_A RTBP1, telomere binding 99.6 3.5E-16 1.2E-20 132.3 4.3 80 9-89 26-114 (122)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 1.8E-16 6.1E-21 114.0 1.6 52 12-65 1-52 (52)
21 1gvd_A MYB proto-oncogene prot 99.6 1.4E-15 4.8E-20 109.4 6.1 50 66-115 1-51 (52)
22 1ity_A TRF1; helix-turn-helix, 99.6 2.8E-16 9.5E-21 119.6 2.3 64 8-72 4-68 (69)
23 1w0t_A Telomeric repeat bindin 99.6 3E-15 1E-19 108.3 6.5 49 67-115 1-52 (53)
24 1x41_A Transcriptional adaptor 99.6 2.9E-15 9.8E-20 111.3 6.2 53 63-115 3-56 (60)
25 1ity_A TRF1; helix-turn-helix, 99.6 4.2E-15 1.4E-19 113.0 7.1 59 61-119 3-64 (69)
26 2dim_A Cell division cycle 5-l 99.6 3E-15 1E-19 114.0 5.6 57 63-119 4-61 (70)
27 2yum_A ZZZ3 protein, zinc fing 99.5 6.5E-15 2.2E-19 113.5 6.5 57 63-119 3-65 (75)
28 3sjm_A Telomeric repeat-bindin 99.5 1.7E-15 5.8E-20 114.4 1.5 56 11-67 8-64 (64)
29 1x41_A Transcriptional adaptor 99.5 2.2E-15 7.5E-20 111.9 2.0 55 9-65 3-57 (60)
30 3sjm_A Telomeric repeat-bindin 99.5 1.5E-14 5.3E-19 109.1 6.4 51 66-116 9-62 (64)
31 2din_A Cell division cycle 5-l 99.5 8.8E-16 3E-20 115.8 -0.7 59 8-70 3-61 (66)
32 2elk_A SPCC24B10.08C protein; 99.5 2.6E-14 9E-19 105.5 6.5 51 63-113 4-56 (58)
33 2yum_A ZZZ3 protein, zinc fing 99.5 3.4E-15 1.2E-19 115.1 0.4 63 8-71 2-68 (75)
34 2ltp_A Nuclear receptor corepr 99.2 3.1E-15 1.1E-19 119.6 0.0 58 61-118 9-66 (89)
35 2elk_A SPCC24B10.08C protein; 99.5 1.2E-14 4.1E-19 107.4 1.9 52 10-62 5-56 (58)
36 1w0t_A Telomeric repeat bindin 99.4 1.9E-14 6.6E-19 104.1 1.4 50 13-63 1-51 (53)
37 2cu7_A KIAA1915 protein; nucle 99.4 1.6E-14 5.4E-19 110.8 0.7 58 8-68 3-60 (72)
38 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.8E-13 9.4E-18 105.0 5.9 52 64-115 14-69 (73)
39 3osg_A MYB21; transcription-DN 99.4 5.8E-14 2E-18 118.2 0.3 92 63-156 6-97 (126)
40 2yus_A SWI/SNF-related matrix- 99.3 6.7E-13 2.3E-17 104.1 4.9 48 65-112 15-62 (79)
41 2llk_A Cyclin-D-binding MYB-li 99.3 2.7E-13 9.2E-18 105.1 2.3 58 5-67 14-71 (73)
42 1x58_A Hypothetical protein 49 99.3 2E-12 6.7E-17 97.2 6.3 50 66-115 6-58 (62)
43 3zqc_A MYB3; transcription-DNA 99.3 3.4E-13 1.2E-17 114.0 2.1 83 8-97 48-130 (131)
44 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.4E-12 4.6E-17 105.9 5.4 52 65-116 1-53 (105)
45 2aje_A Telomere repeat-binding 99.3 9E-13 3.1E-17 108.7 3.7 80 7-87 6-94 (105)
46 2ckx_A NGTRF1, telomere bindin 99.3 5.7E-12 1.9E-16 99.8 6.8 49 69-117 1-54 (83)
47 2yus_A SWI/SNF-related matrix- 99.3 1.1E-12 3.9E-17 102.8 2.5 54 5-61 9-62 (79)
48 2ckx_A NGTRF1, telomere bindin 99.3 2.3E-12 7.9E-17 102.1 3.8 69 15-85 1-79 (83)
49 2aje_A Telomere repeat-binding 99.2 9.9E-12 3.4E-16 102.5 7.0 54 63-116 8-66 (105)
50 2juh_A Telomere binding protei 99.2 8E-12 2.7E-16 105.4 6.4 56 61-116 10-70 (121)
51 2k9n_A MYB24; R2R3 domain, DNA 99.2 5.9E-12 2E-16 102.9 5.4 50 68-117 1-51 (107)
52 2ltp_A Nuclear receptor corepr 98.9 9.6E-13 3.3E-17 105.1 0.0 55 7-64 9-63 (89)
53 1ign_A Protein (RAP1); RAP1,ye 99.2 5.8E-12 2E-16 116.9 4.9 55 64-118 4-64 (246)
54 2cjj_A Radialis; plant develop 99.2 1.9E-11 6.6E-16 98.7 6.6 50 67-116 7-60 (93)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.2 4.6E-12 1.6E-16 98.1 1.3 57 6-63 10-68 (73)
56 2roh_A RTBP1, telomere binding 99.2 3.9E-11 1.3E-15 101.4 6.9 55 63-117 26-85 (122)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 6E-10 2.1E-14 82.9 6.7 48 67-114 11-58 (61)
58 3hm5_A DNA methyltransferase 1 99.0 1E-09 3.4E-14 88.7 6.6 66 51-120 17-87 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.6E-09 8.9E-14 82.4 6.0 50 65-115 5-58 (72)
60 2cjj_A Radialis; plant develop 98.8 4.5E-10 1.5E-14 90.7 0.0 49 13-62 7-57 (93)
61 2iw5_B Protein corest, REST co 98.7 1.5E-08 5.1E-13 93.5 5.6 49 67-115 132-180 (235)
62 1wgx_A KIAA1903 protein; MYB D 98.6 4.7E-08 1.6E-12 75.7 5.4 48 68-115 8-59 (73)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.8E-08 6E-13 74.9 2.3 51 8-61 6-56 (61)
64 1x58_A Hypothetical protein 49 98.5 1.9E-08 6.5E-13 75.5 1.8 50 11-63 5-57 (62)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.3E-08 1.1E-12 76.2 0.9 51 10-62 4-56 (72)
66 2xag_B REST corepressor 1; ami 98.4 1.2E-07 4.2E-12 95.8 5.4 47 69-115 381-427 (482)
67 1fex_A TRF2-interacting telome 98.3 6.5E-07 2.2E-11 66.4 5.1 47 68-114 2-58 (59)
68 1ug2_A 2610100B20RIK gene prod 98.2 1.2E-06 4.1E-11 70.3 5.7 49 70-118 35-86 (95)
69 2yqk_A Arginine-glutamic acid 98.2 2.3E-06 8E-11 63.9 6.8 49 63-111 4-53 (63)
70 1wgx_A KIAA1903 protein; MYB D 98.2 2.6E-07 8.8E-12 71.5 0.5 49 14-63 8-58 (73)
71 1fex_A TRF2-interacting telome 98.2 3E-07 1E-11 68.2 0.4 48 14-63 2-58 (59)
72 2lr8_A CAsp8-associated protei 97.5 2.6E-07 8.8E-12 70.4 0.0 45 70-115 16-63 (70)
73 4eef_G F-HB80.4, designed hema 98.1 6.8E-07 2.3E-11 69.1 0.8 43 68-110 20-66 (74)
74 2iw5_B Protein corest, REST co 98.0 1.3E-06 4.6E-11 80.5 2.0 51 10-63 129-179 (235)
75 1ofc_X ISWI protein; nuclear p 98.0 1.1E-05 3.7E-10 77.5 7.9 102 15-118 111-278 (304)
76 4iej_A DNA methyltransferase 1 98.0 1.7E-05 5.8E-10 63.9 7.7 55 68-122 30-89 (93)
77 4eef_G F-HB80.4, designed hema 97.9 1.4E-06 4.8E-11 67.4 0.2 45 14-59 20-66 (74)
78 2crg_A Metastasis associated p 97.8 4.9E-05 1.7E-09 57.9 6.4 43 68-110 8-51 (70)
79 4a69_C Nuclear receptor corepr 97.7 4.5E-05 1.5E-09 61.3 6.0 45 68-112 43-87 (94)
80 2yqk_A Arginine-glutamic acid 97.5 4.4E-05 1.5E-09 56.9 2.1 50 8-60 3-53 (63)
81 2ebi_A DNA binding protein GT- 97.2 0.0003 1E-08 54.8 4.5 50 68-117 4-67 (86)
82 3hm5_A DNA methyltransferase 1 97.1 0.00011 3.7E-09 59.3 1.2 49 12-62 28-80 (93)
83 2xag_B REST corepressor 1; ami 96.9 0.00028 9.5E-09 71.5 2.0 48 11-61 377-424 (482)
84 1ug2_A 2610100B20RIK gene prod 96.7 0.00072 2.5E-08 54.2 2.9 47 13-60 32-79 (95)
85 4b4c_A Chromodomain-helicase-D 96.7 0.004 1.4E-07 55.5 7.9 47 70-116 136-197 (211)
86 2y9y_A Imitation switch protei 96.6 0.0095 3.3E-07 58.6 10.0 106 15-121 124-297 (374)
87 2crg_A Metastasis associated p 96.5 0.00064 2.2E-08 51.7 1.2 44 13-59 7-51 (70)
88 4a69_C Nuclear receptor corepr 96.5 0.00071 2.4E-08 54.3 1.1 44 14-60 43-86 (94)
89 2lr8_A CAsp8-associated protei 95.2 0.0008 2.7E-08 51.3 0.0 46 15-62 15-61 (70)
90 1irz_A ARR10-B; helix-turn-hel 95.4 0.039 1.3E-06 41.4 6.4 47 66-112 5-56 (64)
91 2ebi_A DNA binding protein GT- 95.2 0.0019 6.3E-08 50.3 -1.4 49 13-61 3-62 (86)
92 4iej_A DNA methyltransferase 1 94.5 0.0097 3.3E-07 47.9 1.0 48 12-61 28-79 (93)
93 1ofc_X ISWI protein; nuclear p 93.6 0.11 3.7E-06 49.8 6.5 48 68-115 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 92.5 0.17 5.8E-06 44.8 5.7 51 66-116 5-60 (211)
95 1irz_A ARR10-B; helix-turn-hel 86.2 0.3 1E-05 36.5 1.8 50 10-59 3-54 (64)
96 2xb0_X Chromo domain-containin 85.6 0.74 2.5E-05 43.3 4.6 29 15-44 169-197 (270)
97 2xb0_X Chromo domain-containin 79.0 3.9 0.00013 38.3 6.8 47 68-114 3-54 (270)
98 2rq5_A Protein jumonji; develo 68.0 25 0.00087 28.9 8.4 79 10-115 3-96 (121)
99 2o8x_A Probable RNA polymerase 66.2 9.4 0.00032 26.6 4.8 44 71-116 16-59 (70)
100 1ku3_A Sigma factor SIGA; heli 63.8 11 0.00037 27.1 4.9 45 71-117 11-59 (73)
101 2p7v_B Sigma-70, RNA polymeras 59.2 11 0.00038 26.6 4.2 42 74-116 8-53 (68)
102 3i4p_A Transcriptional regulat 53.1 11 0.00038 31.5 3.7 45 74-119 3-48 (162)
103 1u78_A TC3 transposase, transp 52.9 58 0.002 25.3 7.9 88 15-109 5-100 (141)
104 2y9y_A Imitation switch protei 52.9 23 0.00079 34.7 6.4 44 69-112 124-169 (374)
105 3cz6_A DNA-binding protein RAP 50.0 10 0.00035 33.3 3.0 25 10-34 110-142 (168)
106 3hug_A RNA polymerase sigma fa 48.5 29 0.001 25.9 5.2 42 74-116 40-81 (92)
107 2li6_A SWI/SNF chromatin-remod 47.3 16 0.00055 29.5 3.7 37 79-115 54-98 (116)
108 2k27_A Paired box protein PAX- 45.6 89 0.0031 25.3 8.2 91 14-110 23-133 (159)
109 1x3u_A Transcriptional regulat 44.7 43 0.0015 23.8 5.4 42 71-115 17-58 (79)
110 2lm1_A Lysine-specific demethy 44.5 36 0.0012 26.8 5.3 38 79-116 49-98 (107)
111 2dbb_A Putative HTH-type trans 42.8 36 0.0012 27.5 5.3 45 73-118 8-53 (151)
112 2jrz_A Histone demethylase jar 42.8 32 0.0011 27.7 4.9 38 79-116 45-94 (117)
113 1tty_A Sigma-A, RNA polymerase 42.7 36 0.0012 25.3 4.9 41 75-116 22-66 (87)
114 1or7_A Sigma-24, RNA polymeras 40.6 55 0.0019 26.8 6.1 32 86-118 155-186 (194)
115 2eqy_A RBP2 like, jumonji, at 39.2 41 0.0014 27.3 5.0 38 79-116 47-96 (122)
116 1fse_A GERE; helix-turn-helix 38.4 47 0.0016 23.1 4.7 44 69-115 10-53 (74)
117 3ulq_B Transcriptional regulat 38.4 61 0.0021 24.6 5.6 47 67-116 26-72 (90)
118 3c57_A Two component transcrip 38.3 47 0.0016 25.2 4.9 44 70-116 27-70 (95)
119 2e1c_A Putative HTH-type trans 37.8 33 0.0011 29.0 4.4 45 73-118 26-71 (171)
120 2cxy_A BAF250B subunit, HBAF25 37.8 45 0.0015 27.1 5.0 38 79-116 56-105 (125)
121 1je8_A Nitrate/nitrite respons 37.3 47 0.0016 24.5 4.7 43 70-115 21-63 (82)
122 2yqf_A Ankyrin-1; death domain 37.0 50 0.0017 26.1 5.1 35 71-106 13-47 (111)
123 2rq5_A Protein jumonji; develo 37.0 8.4 0.00029 31.8 0.4 59 23-84 45-113 (121)
124 1kkx_A Transcription regulator 35.1 29 0.00098 28.5 3.4 40 79-118 53-100 (123)
125 2cyy_A Putative HTH-type trans 34.8 44 0.0015 27.1 4.6 44 74-118 7-51 (151)
126 2kk0_A AT-rich interactive dom 34.4 50 0.0017 27.7 4.9 38 79-116 69-119 (145)
127 1xsv_A Hypothetical UPF0122 pr 34.4 70 0.0024 25.2 5.6 40 75-115 29-68 (113)
128 1c20_A DEAD ringer protein; DN 33.8 62 0.0021 26.3 5.3 39 78-116 56-107 (128)
129 1rp3_A RNA polymerase sigma fa 31.7 70 0.0024 26.9 5.5 31 85-116 201-231 (239)
130 3mzy_A RNA polymerase sigma-H 31.5 59 0.002 25.5 4.7 30 86-116 123-152 (164)
131 2q1z_A RPOE, ECF SIGE; ECF sig 31.5 31 0.0011 28.2 3.1 30 86-116 150-179 (184)
132 2jpc_A SSRB; DNA binding prote 31.4 77 0.0026 21.2 4.7 39 76-116 3-41 (61)
133 1k78_A Paired box protein PAX5 31.2 94 0.0032 24.8 6.0 78 14-97 30-118 (149)
134 2of5_H Leucine-rich repeat and 30.2 54 0.0018 26.3 4.2 30 76-106 13-42 (118)
135 3cz6_A DNA-binding protein RAP 29.0 41 0.0014 29.4 3.4 28 53-80 98-126 (168)
136 2o71_A Death domain-containing 28.7 65 0.0022 26.0 4.5 39 63-105 14-52 (115)
137 2jxj_A Histone demethylase jar 28.6 31 0.001 26.6 2.4 37 79-115 41-89 (96)
138 2rnj_A Response regulator prot 28.4 55 0.0019 24.3 3.8 43 70-115 29-71 (91)
139 1tc3_C Protein (TC3 transposas 28.4 1.1E+02 0.0036 18.8 5.4 38 70-109 5-42 (51)
140 2of5_A Death domain-containing 28.0 62 0.0021 26.1 4.2 40 62-105 13-52 (114)
141 2p5v_A Transcriptional regulat 27.9 63 0.0021 26.5 4.4 45 73-118 9-54 (162)
142 2lfw_A PHYR sigma-like domain; 27.4 68 0.0023 26.0 4.5 44 74-118 96-139 (157)
143 2cg4_A Regulatory protein ASNC 27.3 70 0.0024 25.8 4.6 45 74-119 8-53 (152)
144 1ig6_A MRF-2, modulator recogn 26.4 44 0.0015 26.3 3.0 37 79-115 38-87 (107)
145 1p4w_A RCSB; solution structur 25.9 1.3E+02 0.0045 23.2 5.7 46 68-116 32-77 (99)
146 3e7l_A Transcriptional regulat 24.9 1.1E+02 0.0037 21.4 4.6 34 73-107 18-51 (63)
147 2ia0_A Putative HTH-type trans 24.0 80 0.0027 26.5 4.4 45 73-118 16-61 (171)
148 2pn6_A ST1022, 150AA long hypo 23.8 65 0.0022 25.9 3.7 45 74-119 3-48 (150)
149 1s7o_A Hypothetical UPF0122 pr 23.5 1.2E+02 0.0041 23.9 5.1 43 71-115 23-65 (113)
150 1ntc_A Protein (nitrogen regul 23.2 1.3E+02 0.0044 22.6 5.1 35 73-108 50-84 (91)
151 1i1g_A Transcriptional regulat 23.0 95 0.0032 24.4 4.5 43 75-118 5-48 (141)
152 2p1m_A SKP1-like protein 1A; F 23.0 24 0.00083 29.7 0.9 34 40-81 120-153 (160)
153 1wxp_A THO complex subunit 1; 22.0 96 0.0033 24.4 4.3 30 76-106 18-47 (110)
154 2cfx_A HTH-type transcriptiona 20.3 1.1E+02 0.0039 24.4 4.4 45 74-119 5-50 (144)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.4e-33 Score=230.47 Aligned_cols=105 Identities=44% Similarity=0.909 Sum_probs=99.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 019787 11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRW 90 (336)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW 90 (336)
.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++++||++|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence 478999999999999999999998 58999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787 91 SIIAAQLPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 91 ~~IA~~lpGRT~~qcknRw~~llkkk~ 117 (336)
+.||+.|||||+++|++||+.++++++
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998753
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=2.4e-33 Score=230.57 Aligned_cols=104 Identities=33% Similarity=0.670 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 019787 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSII 93 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~I 93 (336)
|++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|++++.+||++|..|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence 689999999999999999997 59999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787 94 AAQLPGRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 94 A~~lpGRT~~qcknRw~~llkkk~~~ 119 (336)
|++|||||+++|++||..++++..+.
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 99999999999999999999886553
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=6.9e-33 Score=234.15 Aligned_cols=106 Identities=40% Similarity=0.706 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG 87 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G 87 (336)
.++.+++++||+|||++|+++|++||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999998 8999999998 8999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 88 SRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 88 ~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
.+|..||+.|||||+++|++||..++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998874
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=2.6e-32 Score=231.81 Aligned_cols=105 Identities=40% Similarity=0.795 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 019787 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSII 93 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~I 93 (336)
||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 799999999999999999997 59999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhHHhhc
Q 019787 94 AAQLPGRTDNDIKNYWNTKLKKKLMAM 120 (336)
Q Consensus 94 A~~lpGRT~~qcknRw~~llkkk~~~~ 120 (336)
|++|||||+++|++||+.++++.+...
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999887643
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=1.2e-32 Score=232.66 Aligned_cols=107 Identities=43% Similarity=0.883 Sum_probs=102.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG 87 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G 87 (336)
.+|.+++++||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++++||
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 458999999999999999999999997 58999999998 9999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 88 SRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 88 ~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
++|+.||++|||||+++|++||+.+++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999875
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.5e-30 Score=227.08 Aligned_cols=108 Identities=43% Similarity=0.875 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG 87 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G 87 (336)
.+|.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||+.||.++|+|.+++++||+|||++|++++++||
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 468999999999999999999999997 58999999998 9999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787 88 SRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 88 ~kW~~IA~~lpGRT~~qcknRw~~llkkk~ 117 (336)
++|+.||++|||||+++|++||+.++++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=2e-29 Score=219.85 Aligned_cols=105 Identities=33% Similarity=0.714 Sum_probs=62.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCC-C
Q 019787 11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGS-R 89 (336)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~-k 89 (336)
.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~ 80 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKR 80 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCccc
Confidence 368999999999999999999997 58999999998 99999999999999999999999999999999999999997 7
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787 90 WSIIAAQLPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 90 W~~IA~~lpGRT~~qcknRw~~llkkk~ 117 (336)
|..||..|||||+.||++||..+|.+.+
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 9999999999999999999999887543
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-21 Score=149.52 Aligned_cols=67 Identities=30% Similarity=0.666 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHH
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEED 76 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED 76 (336)
..|.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 468899999999999999999999996 49999999999 99999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=1.2e-20 Score=159.11 Aligned_cols=76 Identities=29% Similarity=0.625 Sum_probs=52.0
Q ss_pred cccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787 41 LPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 41 IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~ 117 (336)
||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +|..||..|||||+.||++||..+|.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 77 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEV 77 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccc
Confidence 678888 99999999999999999999999999999999999999996 79999999999999999999999887543
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.74 E-value=1.3e-18 Score=161.34 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=93.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC----CccccccccccccCcccccceeccccCCCCC-----------------
Q 019787 9 KANVKKGPWSPEEDSKLKEYIEKYGTGG----NWIALPQKAGLKRCGKSCRLRWLNYLRPNIK----------------- 67 (336)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~----nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lk----------------- 67 (336)
.+.++|++||+|||++|+++|+++|... .|..||..|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678999999999999999999998731 2999999998 99999999999999999997
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 019787 68 ------------HGEFTDEEDRLICSLFAS-I------------------------------------------------ 86 (336)
Q Consensus 68 ------------kg~WT~EED~~Ll~lv~k-~------------------------------------------------ 86 (336)
+..||.|||-.|+..+++ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999887 2
Q ss_pred -----CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 87 -----GS----RWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 87 -----G~----kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
|. .|.+||+.+|+||..++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999998776
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-18 Score=133.35 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=48.0
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787 55 RLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK 114 (336)
Q Consensus 55 r~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llk 114 (336)
--||.++|+|.+++++||+|||++|++++++||++|+.||+.| |||++|||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 9999999999987644
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=4.3e-17 Score=125.18 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=55.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhc
Q 019787 62 LRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120 (336)
Q Consensus 62 L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~ 120 (336)
++|.+++++||+|||++|++++++||.+|..||++|||||+.|||+||+.++++..+..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999987653
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=122.06 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=56.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcC
Q 019787 61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMA 121 (336)
Q Consensus 61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~ 121 (336)
+|+|.+++++||+|||++|++++++||.+|..||+ |+|||+.|||+||..+|++.+....
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999887543
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.5e-16 Score=117.80 Aligned_cols=56 Identities=25% Similarity=0.456 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
+|.+++++||+|||++|+++|++|| .+|..||++|+|||+.||++||..+|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 5999999999999999999999999887543
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=5.8e-17 Score=119.99 Aligned_cols=57 Identities=26% Similarity=0.609 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCC
Q 019787 9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIK 67 (336)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lk 67 (336)
.|.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 58899999999999999999999996 49999999998 99999999999999999875
No 16
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.63 E-value=4.5e-17 Score=137.51 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc---cccCcccccceeccccC-----CCCCCC-CCCHHHHHH
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG---LKRCGKSCRLRWLNYLR-----PNIKHG-EFTDEEDRL 78 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~---~gRt~kQCr~RW~n~L~-----P~lkkg-~WT~EED~~ 78 (336)
.++..++++||+|||+.|+++|++||. ++|..|+..+. .+||+.+|++||.+.|+ |.++++ +|++||+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 357899999999999999999999998 59999999852 48999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCCHHH
Q 019787 79 ICSLFASIGSRWSI 92 (336)
Q Consensus 79 Ll~lv~k~G~kW~~ 92 (336)
|+++...+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=9.6e-17 Score=115.60 Aligned_cols=52 Identities=42% Similarity=0.926 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787 12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN 65 (336)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~ 65 (336)
+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999997 58999999998 999999999999999984
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=7.6e-16 Score=110.75 Aligned_cols=50 Identities=32% Similarity=0.592 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
+++++||+|||++|+++|++||. +|..||+.|+|||+.||++||..+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 999999999999999999999998864
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.60 E-value=3.5e-16 Score=132.26 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=72.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc---cccCcccccceecccc-----CCCCCCCCCCHHH-HHHH
Q 019787 9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPNIKHGEFTDEE-DRLI 79 (336)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~---~gRt~kQCr~RW~n~L-----~P~lkkg~WT~EE-D~~L 79 (336)
+...++++||+|||+.|+++|++||. ++|..|+..+. .+||+.+|++||.+.+ +|.++++.|+++| +..|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 35678999999999999999999998 59999998742 4899999999999998 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 019787 80 CSLFASIGSR 89 (336)
Q Consensus 80 l~lv~k~G~k 89 (336)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=1.8e-16 Score=114.05 Aligned_cols=52 Identities=35% Similarity=0.732 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787 12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN 65 (336)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~ 65 (336)
+++++||+|||++|+++|.+||. .+|..||..|+ +|++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57899999999999999999997 58999999998 999999999999999984
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.4e-15 Score=109.44 Aligned_cols=50 Identities=34% Similarity=0.707 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
+++++||+|||++|+++|++||. +|..||..|+|||+.||++||..+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998864
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=2.8e-16 Score=119.60 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcccccccccc-ccCcccccceeccccCCCCCCCCCC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLRPNIKHGEFT 72 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~P~lkkg~WT 72 (336)
.++..++++||+|||++|+++|++||. .+|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 457889999999999999999999997 599999999975 8999999999999999999988764
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=3e-15 Score=108.32 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhh
Q 019787 67 KHGEFTDEEDRLICSLFASIG-SRWSIIAAQLP--GRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 67 kkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lp--GRT~~qcknRw~~llkk 115 (336)
++++||+|||++|+++|++|| .+|..||..|+ |||+.||++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 59999999999 99999999999999875
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.9e-15 Score=111.26 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
.|.+.+++||+|||++|+++|++|| .+|..||++|+|||+.||++||..+|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 6999999999999999999999988764
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.56 E-value=4.2e-15 Score=113.05 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=53.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHHhh
Q 019787 61 YLRPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLP--GRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lp--GRT~~qcknRw~~llkkk~~~ 119 (336)
...|..++++||+|||++|+++|++|| .+|..||..|+ |||+.||++||..+|++.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 456778899999999999999999999 59999999999 999999999999999986543
No 26
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=114.03 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~ 119 (336)
.|.+++++||+|||++|+++|++|| .+|..||..|+|||+.||++||..+|++.+.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 5788999999999999999999999 69999999999999999999999999876553
No 27
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.5e-15 Score=113.52 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=52.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIG------SRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G------~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~ 119 (336)
+|.+.+++||+|||++|++++++|| .+|..||++|+|||+.||++||..+|++..+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999 68999999999999999999999888876554
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1.7e-15 Score=114.38 Aligned_cols=56 Identities=30% Similarity=0.562 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccCcccccceeccccCCCCC
Q 019787 11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG-LKRCGKSCRLRWLNYLRPNIK 67 (336)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~-~gRt~kQCr~RW~n~L~P~lk 67 (336)
..+|++||+|||++|+++|++||. .+|..||+.++ .+||+.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 467899999999999999999997 58999998764 489999999999999998764
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.2e-15 Score=111.87 Aligned_cols=55 Identities=18% Similarity=0.495 Sum_probs=51.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787 9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN 65 (336)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~ 65 (336)
.+++++++||+|||++|+++|++||. .+|..||+.|+ +||++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 47899999999999999999999996 49999999999 899999999999999764
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1.5e-14 Score=109.12 Aligned_cols=51 Identities=27% Similarity=0.443 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC--CCCHHHHHHHHHHHhhhH
Q 019787 66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLP--GRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lp--GRT~~qcknRw~~llkkk 116 (336)
.++++||+|||++|+++|++||. +|..||+.++ |||+.||++||..++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 46889999999999999999995 8999999865 999999999999998864
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.8e-16 Score=115.77 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGE 70 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~ 70 (336)
.+|.+++++||+|||++|+++|+.||. +|..||. ++ +||++||+.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 579999999999999999999999998 8999999 66 79999999999999999877653
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=2.6e-14 Score=105.51 Aligned_cols=51 Identities=16% Similarity=0.319 Sum_probs=46.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLP-GRTDNDIKNYWNTKL 113 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lp-GRT~~qcknRw~~ll 113 (336)
+..+.+++||+|||++|+++|++|| .+|..||++|+ |||+.||++||..++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999 79999999999 999999999998764
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.4e-15 Score=115.07 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC----CCccccccccccccCcccccceeccccCCCCCCCCC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEF 71 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~----~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~W 71 (336)
.+|.+++++||+|||++|+++|.+||.. .+|..||+.|+ +||++||+.||.++|.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4799999999999999999999999941 38999999999 999999999999999988777653
No 34
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-15 Score=119.58 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=54.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
.++|.+++++||+|||++|++++.+||.+|..||..|+|||++||++||..++++...
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 5688999999999999999999999999999999999999999999999999887543
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.2e-14 Score=107.37 Aligned_cols=52 Identities=25% Similarity=0.496 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceecccc
Q 019787 10 ANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62 (336)
Q Consensus 10 p~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L 62 (336)
..+.+++||+|||++|+++|++||. .+|..||+.|+.+||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999996 499999999987899999999999865
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.43 E-value=1.9e-14 Score=104.07 Aligned_cols=50 Identities=30% Similarity=0.579 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCcccccccccc-ccCcccccceeccccC
Q 019787 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLR 63 (336)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~ 63 (336)
++++||+|||++|+++|++||. .+|..||..++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999997 499999999875 6999999999999875
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.6e-14 Score=110.83 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKH 68 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkk 68 (336)
..|.+++++||+|||++|+++|++||. +|..||..|+ +||+.||+.||..+|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999998 9999999998 999999999999999876665
No 38
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=2.8e-13 Score=104.98 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 64 PNIKHGEFTDEEDRLICSLFASIG----SRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 64 P~lkkg~WT~EED~~Ll~lv~k~G----~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
+.+.+++||+|||++|++++++|| .+|.+||++|||||+.||++||..+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 457789999999999999999999 6899999999999999999999988763
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.37 E-value=5.8e-14 Score=118.18 Aligned_cols=92 Identities=22% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcCCCCCCCCCCCCCCCCCCCCCc
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHHH 142 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~~~~ss~~~~~~p~~~~~~~~~ 142 (336)
.+..++++||+|||++|+++|++||.+|..||..|+|||+.||+.||..+|.+.+.. .+|+..+...+..++......
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~--~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH--TPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC--SCCCHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc--ccCCHHHHHHHHHHHHHHCcC
Confidence 456889999999999999999999999999999999999999999999998765433 245554443332333333345
Q ss_pred cchhhccCCCCCCc
Q 019787 143 HQALVSLLPSQPYY 156 (336)
Q Consensus 143 ~~~~~s~~~~~p~~ 156 (336)
|..++..++++...
T Consensus 84 W~~Ia~~l~gRt~~ 97 (126)
T 3osg_A 84 WAIIAKFFPGRTDI 97 (126)
T ss_dssp HHHHHTTSTTCCHH
T ss_pred HHHHHHHcCCCCHH
Confidence 66666666655443
No 40
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=6.7e-13 Score=104.10 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 019787 65 NIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTK 112 (336)
Q Consensus 65 ~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~l 112 (336)
...+++||+|||++|++++++||.+|.+||++|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999755
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-13 Score=105.08 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCC
Q 019787 5 PCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIK 67 (336)
Q Consensus 5 ~~c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lk 67 (336)
--...|.+++++||+|||++|+++|++||. .|..||+.| +||+.||+.||.. |....+
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 334679999999999999999999999998 699999999 7999999999985 544443
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=2e-12 Score=97.19 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHHhhh
Q 019787 66 IKHGEFTDEEDRLICSLFASIGSRWSIIA---AQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 66 lkkg~WT~EED~~Ll~lv~k~G~kW~~IA---~~lpGRT~~qcknRw~~llkk 115 (336)
.++.+||+|||+.|+++|++||.+|..|+ .++++||+.++++||+.+.|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 577999999999999999875
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.32 E-value=3.4e-13 Score=114.04 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG 87 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G 87 (336)
..|.+++++||+|||++|+++|.+||. .|..||..|+ +||+.+|+.||.++|++.+..++|+.+- +......+
T Consensus 48 l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk 120 (131)
T 3zqc_A 48 LDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK 120 (131)
T ss_dssp TSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence 458999999999999999999999997 8999999998 9999999999999999999999988763 11112224
Q ss_pred CCHHHHHhhC
Q 019787 88 SRWSIIAAQL 97 (336)
Q Consensus 88 ~kW~~IA~~l 97 (336)
.+|..|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 5688887765
No 44
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.31 E-value=1.4e-12 Score=105.95 Aligned_cols=52 Identities=33% Similarity=0.695 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 65 NIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 65 ~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
.+++++||+|||++|+++|++||. +|..||..|||||+.||+.||..+|.+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCc
Confidence 368999999999999999999997 7999999999999999999999988654
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.30 E-value=9e-13 Score=108.73 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=67.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc---cccCcccccceecccc-----CCCCCCCCCCHHHHHH
Q 019787 7 CDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPNIKHGEFTDEEDRL 78 (336)
Q Consensus 7 c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~---~gRt~kQCr~RW~n~L-----~P~lkkg~WT~EED~~ 78 (336)
-.++..++++||+|||+.|+++|++||. ++|..|+..+. .+||+.+|++||.+.+ +|.++++.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 3467889999999999999999999998 59999999762 4899999999999988 7999999988888755
Q ss_pred -HHHHHHHhC
Q 019787 79 -ICSLFASIG 87 (336)
Q Consensus 79 -Ll~lv~k~G 87 (336)
+++|...+|
T Consensus 85 rv~~~~~~~~ 94 (105)
T 2aje_A 85 RVLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 777777655
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.27 E-value=5.7e-12 Score=99.83 Aligned_cols=49 Identities=22% Similarity=0.410 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHH
Q 019787 69 GEFTDEEDRLICSLFASIGS-RWSIIAAQ----LPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 69 g~WT~EED~~Ll~lv~k~G~-kW~~IA~~----lpGRT~~qcknRw~~llkkk~ 117 (336)
.+||+|||+.|+++|++||. +|+.|++. |+|||+++||+||+.+++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999998 99999995 899999999999999998654
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=102.79 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787 5 PCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61 (336)
Q Consensus 5 ~~c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~ 61 (336)
..+.++...+++||+|||++|+++|++||. +|..||..|+ +||+.||+.||.++
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 9 LAKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cCCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 355677888999999999999999999994 9999999999 89999999999997
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.26 E-value=2.3e-12 Score=102.09 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccc----cccccCcccccceecccc-----CCCCCCC-CCCHHHHHHHHHHHH
Q 019787 15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQK----AGLKRCGKSCRLRWLNYL-----RPNIKHG-EFTDEEDRLICSLFA 84 (336)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~----l~~gRt~kQCr~RW~n~L-----~P~lkkg-~WT~EED~~Ll~lv~ 84 (336)
++||+|||++|+++|++||. ++|..|+.. ++ +||+.+|++||.+.+ +|.++++ +..++....++.|..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998 599999985 55 899999999999987 6876665 577777788888775
Q ss_pred H
Q 019787 85 S 85 (336)
Q Consensus 85 k 85 (336)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 4
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.24 E-value=9.9e-12 Score=102.51 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQL----PGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~l----pGRT~~qcknRw~~llkkk 116 (336)
.+..++++||+|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+.+++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34678899999999999999999998 999999965 8999999999999999864
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.24 E-value=8e-12 Score=105.43 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=51.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 019787 61 YLRPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQ----LPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~----lpGRT~~qcknRw~~llkkk 116 (336)
-+.+..++++||+|||+.|+++|++||. +|+.|++. |+|||+++||+||+.+++..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3567788999999999999999999998 99999997 49999999999999999864
No 51
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.24 E-value=5.9e-12 Score=102.95 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787 68 HGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~ 117 (336)
+++||+|||++|+++|++||. +|..||..|||||+.||+.||..+|.+.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i 51 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPAL 51 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccc
Confidence 589999999999999999996 89999999999999999999999887644
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.86 E-value=9.6e-13 Score=105.12 Aligned_cols=55 Identities=24% Similarity=0.475 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCC
Q 019787 7 CDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64 (336)
Q Consensus 7 c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P 64 (336)
...|.+++++||+|||++|+++|.+||. +|..||..|+ +||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 3468899999999999999999999998 7999999999 99999999999998763
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.22 E-value=5.8e-12 Score=116.92 Aligned_cols=55 Identities=31% Similarity=0.515 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 64 PNIKHGEFTDEEDRLICSLFASIGSR------WSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 64 P~lkkg~WT~EED~~Ll~lv~k~G~k------W~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
+.+++++||+|||++|+++|+++|++ |..||++|||||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 46788999999999999999999885 99999999999999999999999998754
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.20 E-value=1.9e-11 Score=98.70 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 67 KHGEFTDEEDRLICSLFASIG----SRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 67 kkg~WT~EED~~Ll~lv~k~G----~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
.+++||+|||++|++++.+|| .+|.+||+.|||||+.+|++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 58999999999999999999999988764
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.17 E-value=4.6e-12 Score=98.08 Aligned_cols=57 Identities=14% Similarity=0.379 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceeccccC
Q 019787 6 CCDKANVKKGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLR 63 (336)
Q Consensus 6 ~c~kp~lkKg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 63 (336)
.-.++...+++||+|||++|+.+|++||. ..+|..||..|+ +||.+||+.||...+.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999983 138999999999 9999999999998654
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.16 E-value=3.9e-11 Score=101.37 Aligned_cols=55 Identities=24% Similarity=0.380 Sum_probs=49.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHH
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQ----LPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~----lpGRT~~qcknRw~~llkkk~ 117 (336)
....++++||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+.+++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 44567899999999999999999998 99999996 489999999999999998653
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=6e-10 Score=82.88 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787 67 KHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK 114 (336)
Q Consensus 67 kkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llk 114 (336)
..++||+||++++++++.+||.+|..||.+||+||..+|..+|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999976544
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.95 E-value=1e-09 Score=88.70 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=59.8
Q ss_pred cccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhHHhhc
Q 019787 51 GKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQL-----PGRTDNDIKNYWNTKLKKKLMAM 120 (336)
Q Consensus 51 ~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~l-----pGRT~~qcknRw~~llkkk~~~~ 120 (336)
+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.....
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678899999976 89999999999999999999999999998 58999999999999999877754
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.87 E-value=2.6e-09 Score=82.35 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 65 NIKHGEFTDEEDRLICSLFASIG----SRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 65 ~lkkg~WT~EED~~Ll~lv~k~G----~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
..+.+.||.|||++|.+++.+|+ .+|.+||++| |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45578899999999999999997 4799999998 99999999999988765
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.81 E-value=4.5e-10 Score=90.69 Aligned_cols=49 Identities=14% Similarity=0.398 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceecccc
Q 019787 13 KKGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYL 62 (336)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L 62 (336)
.+++||+|||++|++++++||. ..+|..||+.++ |||..+|+.||...+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3678999999999999999973 247999999999 999999999998854
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.68 E-value=1.5e-08 Score=93.47 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 67 KHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 67 kkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
..++||+||++++++++.+||.+|..||+.|++||..||+++|....++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999988776
No 62
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=4.7e-08 Score=75.67 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 68 HGEFTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~----kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
...||++|+++|.+++..|+. +|.+||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 467999999999999999984 699999999999999999999988554
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=74.90 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~ 61 (336)
++......+||+||++++.+++.+||. +|..||..|+ +|+..||.++|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 445567789999999999999999996 8999999998 99999999998654
No 64
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.54 E-value=1.9e-08 Score=75.51 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCcccccc---ccccccCcccccceeccccC
Q 019787 11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQ---KAGLKRCGKSCRLRWLNYLR 63 (336)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~---~l~~gRt~kQCr~RW~n~L~ 63 (336)
.-++.+||+|||+.|+++|++||. .|..|+. ++. +||....++||++...
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 347899999999999999999997 8999994 444 8999999999988543
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=3.3e-08 Score=76.20 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceecccc
Q 019787 10 ANVKKGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYL 62 (336)
Q Consensus 10 p~lkKg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L 62 (336)
+..+++.||.|||++|.+++++|+. ..+|..||+.+ +||..+|+.||....
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 5567889999999999999999963 35899999997 499999999997754
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.45 E-value=1.2e-07 Score=95.76 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 69 GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 69 g~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
.+||+||-.++++++.+||.+|..||..+..||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999755443
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.31 E-value=6.5e-07 Score=66.36 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-CHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 019787 68 HGEFTDEEDRLICSLFASI--------GS-RWSIIAA-QLPGRTDNDIKNYWNTKLK 114 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~--------G~-kW~~IA~-~lpGRT~~qcknRw~~llk 114 (336)
+.+||+|||++|++.|.++ |+ -|.++|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 54 3999999 7999999999999987664
No 68
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.25 E-value=1.2e-06 Score=70.27 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 70 EFTDEEDRLICSLFASIGS---RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 70 ~WT~EED~~Ll~lv~k~G~---kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
-||.|||+.||..+++-|. .|..||+.|.+|+.+||++||+.|++-.-+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5999999999999999997 899999999899999999999999875443
No 69
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.3e-06 Score=63.91 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=44.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIGSRWSIIAA-QLPGRTDNDIKNYWNT 111 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~-~lpGRT~~qcknRw~~ 111 (336)
.|.+...+||+||-++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 467788899999999999999999999999999 5899999999988753
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.18 E-value=2.6e-07 Score=71.52 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceeccccC
Q 019787 14 KGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLR 63 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 63 (336)
...||+||+++|..++..|+. .++|..||..++ +||..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 457999999999999999953 358999999999 8999999999987654
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.16 E-value=3e-07 Score=68.19 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCCcccccc-ccccccCcccccceeccccC
Q 019787 14 KGPWSPEEDSKLKEYIEKY--------GTGGNWIALPQ-KAGLKRCGKSCRLRWLNYLR 63 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~ky--------G~~~nW~~IA~-~l~~gRt~kQCr~RW~n~L~ 63 (336)
+.+||+|||+.|++.|.+| |. .-|+.+|+ .++ .+|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 44 37999999 676 9999999999999874
No 72
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.45 E-value=2.6e-07 Score=70.43 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 70 EFTDEEDRLICSLFASIGS---RWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 70 ~WT~EED~~Ll~lv~k~G~---kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
-||.|||+.|+..+++-|. .|..||+.| +||++||++||..|++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4999999999999999998 799999999 99999999999988763
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.07 E-value=6.8e-07 Score=69.14 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 019787 68 HGEFTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYWN 110 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~----kW~~IA~~lpGRT~~qcknRw~ 110 (336)
...||.||+++|..++..|+. +|.+||+.|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 7999999999999999998874
No 74
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.03 E-value=1.3e-06 Score=80.52 Aligned_cols=51 Identities=24% Similarity=0.414 Sum_probs=46.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccC
Q 019787 10 ANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR 63 (336)
Q Consensus 10 p~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 63 (336)
......+||+||++++++++.+||. +|..||..++ +||..||+.+|.++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3456789999999999999999997 8999999999 9999999999988764
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.00 E-value=1.1e-05 Score=77.45 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccc-------ee-----------------------------
Q 019787 15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRL-------RW----------------------------- 58 (336)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~-------RW----------------------------- 58 (336)
+.||..|...++.++.+||. .+|..||..|+ ++|...++. ||
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999998 69999999998 777755431 11
Q ss_pred ------------cc--ccCCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHHH
Q 019787 59 ------------LN--YLRPNIKHGEFTDEEDRLICSLFASIGS----RWSIIAA------------QLPGRTDNDIKNY 108 (336)
Q Consensus 59 ------------~n--~L~P~lkkg~WT~EED~~Ll~lv~k~G~----kW~~IA~------------~lpGRT~~qcknR 108 (336)
.. ..-+.-+...||++||+.|+-++.+||- .|..|.. ++..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 00 0012234568999999999999999995 6999962 4468999999999
Q ss_pred HHHHhhhHHh
Q 019787 109 WNTKLKKKLM 118 (336)
Q Consensus 109 w~~llkkk~~ 118 (336)
..+|++-..+
T Consensus 269 c~tLi~~iek 278 (304)
T 1ofc_X 269 CNTLITLIER 278 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999976443
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.00 E-value=1.7e-05 Score=63.95 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhHHhhcCC
Q 019787 68 HGEFTDEEDRLICSLFASIGSRWSIIAAQLP-----GRTDNDIKNYWNTKLKKKLMAMAP 122 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~~lp-----GRT~~qcknRw~~llkkk~~~~~~ 122 (336)
...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++.+....+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~~ 89 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 3689999999999999999999999998773 799999999999999988876654
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.93 E-value=1.4e-06 Score=67.36 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCCCccccccccccccCcccccceec
Q 019787 14 KGPWSPEEDSKLKEYIEKYG--TGGNWIALPQKAGLKRCGKSCRLRWL 59 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG--~~~nW~~IA~~l~~gRt~kQCr~RW~ 59 (336)
.++||.||+++|..++++|. +..+|.+||+.+| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 56799999999999999994 3468999999999 899999999885
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.77 E-value=4.9e-05 Score=57.90 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHH
Q 019787 68 HGEFTDEEDRLICSLFASIGSRWSIIAA-QLPGRTDNDIKNYWN 110 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~-~lpGRT~~qcknRw~ 110 (336)
..+||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999999999999 689999999998886
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.73 E-value=4.5e-05 Score=61.33 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 019787 68 HGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTK 112 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~l 112 (336)
...||+||.+++.+++..||.+|..||..||+||..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 457999999999999999999999999999999999999887644
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=4.4e-05 Score=56.94 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcccccc-ccccccCcccccceecc
Q 019787 8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQ-KAGLKRCGKSCRLRWLN 60 (336)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~-~l~~gRt~kQCr~RW~n 60 (336)
..|.++...||+||-++..+++.+||. +|..|+. .++ +|+..+|.+-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 468888999999999999999999997 8999998 577 8999999876643
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.21 E-value=0.0003 Score=54.84 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------CHHHHHhhC----CCCCHHHHHHHHHHHhhhHH
Q 019787 68 HGEFTDEEDRLICSLFASIGS----------RWSIIAAQL----PGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~----------kW~~IA~~l----pGRT~~qcknRw~~llkkk~ 117 (336)
...||.+|-.+||+++..... .|..||..| -.||+.||+.+|..|.+.-.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999976321 499999987 26999999999998887643
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.13 E-value=0.00011 Score=59.28 Aligned_cols=49 Identities=12% Similarity=0.358 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc----cccCcccccceecccc
Q 019787 12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG----LKRCGKSCRLRWLNYL 62 (336)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~----~gRt~kQCr~RW~n~L 62 (336)
+...+||.||++.|++|+++||. .|..|+..+. .+||.-+.+.||....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34489999999999999999998 8999999983 3799999999997643
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.90 E-value=0.00028 Score=71.49 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787 11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61 (336)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~ 61 (336)
.....+||.||-+++++++.+||. +|..||..++ +|+..||+..|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345789999999999999999997 9999999999 89999999988654
No 84
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.75 E-value=0.00072 Score=54.25 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CCCccccccccccccCcccccceecc
Q 019787 13 KKGPWSPEEDSKLKEYIEKYGT-GGNWIALPQKAGLKRCGKSCRLRWLN 60 (336)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~-~~nW~~IA~~l~~gRt~kQCr~RW~n 60 (336)
+--.||.|||..|+...++-|. ..-|..||+.++ +|++.|+++|++.
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 3346999999999999999987 458999999998 8999999999977
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.71 E-value=0.004 Score=55.50 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHHh--hC------------CCCCHHHHHHHHHHHhhhH
Q 019787 70 EFTDEEDRLICSLFASIG-SRWSIIAA--QL------------PGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 70 ~WT~EED~~Ll~lv~k~G-~kW~~IA~--~l------------pGRT~~qcknRw~~llkkk 116 (336)
.||++||..|+..+.+|| .+|..|-. .| ..+++..+..|...||+-.
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 599999999999999999 79999975 21 1245678999988777643
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.57 E-value=0.0095 Score=58.58 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccccccccCccccc---------------------------------------
Q 019787 15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCR--------------------------------------- 55 (336)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr--------------------------------------- 55 (336)
+-||.-|=..++.++.+||. .+-..||..|+.+.+...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999998 68999999996455553332
Q ss_pred ---------ceeccc-c--CCC-CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhh------------CCCCCHHHHH
Q 019787 56 ---------LRWLNY-L--RPN-IKHGEFTDEEDRLICSLFASIGS----RWSIIAAQ------------LPGRTDNDIK 106 (336)
Q Consensus 56 ---------~RW~n~-L--~P~-lkkg~WT~EED~~Ll~lv~k~G~----kW~~IA~~------------lpGRT~~qck 106 (336)
.-|... + .+. -+...||++||+.||-++.+||- .|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 111110 0 111 13457999999999999999994 69998432 4579999999
Q ss_pred HHHHHHhhhHHhhcC
Q 019787 107 NYWNTKLKKKLMAMA 121 (336)
Q Consensus 107 nRw~~llkkk~~~~~ 121 (336)
.|...|++-..+...
T Consensus 283 rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 283 RRGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999987666544
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.54 E-value=0.00064 Score=51.65 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCcccccc-ccccccCcccccceec
Q 019787 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQ-KAGLKRCGKSCRLRWL 59 (336)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~-~l~~gRt~kQCr~RW~ 59 (336)
...+||+||-++..+++.+||. +|..|+. .++ +|+..+|.+-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4567999999999999999997 8999998 577 999999987664
No 88
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.45 E-value=0.00071 Score=54.28 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceecc
Q 019787 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n 60 (336)
...||+||.+++.++...||. +|..||..++ +|+..+|.+-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 467999999999999999997 8999999998 9999999886643
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.19 E-value=0.0008 Score=51.27 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CCCccccccccccccCcccccceecccc
Q 019787 15 GPWSPEEDSKLKEYIEKYGT-GGNWIALPQKAGLKRCGKSCRLRWLNYL 62 (336)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~-~~nW~~IA~~l~~gRt~kQCr~RW~n~L 62 (336)
-.||.|||..|+..+++-|. ..-|..||..++ |++.|+..|+...+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLM 61 (70)
Confidence 46999999999999999887 347999999984 99999999998743
No 90
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.41 E-value=0.039 Score=41.45 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHH
Q 019787 66 IKHGEFTDEEDRLICSLFASIGSR---WSIIAAQL--PGRTDNDIKNYWNTK 112 (336)
Q Consensus 66 lkkg~WT~EED~~Ll~lv~k~G~k---W~~IA~~l--pGRT~~qcknRw~~l 112 (336)
..+-.||+|..+..++++.++|.. |..|.+.| +|.|..+|+.|.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345679999999999999999964 78998876 799999999987654
No 91
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.22 E-value=0.0019 Score=50.31 Aligned_cols=49 Identities=18% Similarity=0.436 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC------C--CCCccccccccc---cccCcccccceeccc
Q 019787 13 KKGPWSPEEDSKLKEYIEKYG------T--GGNWIALPQKAG---LKRCGKSCRLRWLNY 61 (336)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG------~--~~nW~~IA~~l~---~gRt~kQCr~RW~n~ 61 (336)
+...||.+|-..|+++..... . ...|..||..|. -.|++.||+.+|.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 457799999999999997531 1 126999999965 469999999999774
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.50 E-value=0.0097 Score=47.85 Aligned_cols=48 Identities=13% Similarity=0.376 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc----cccCcccccceeccc
Q 019787 12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG----LKRCGKSCRLRWLNY 61 (336)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~----~gRt~kQCr~RW~n~ 61 (336)
++...||.||...|++++++|+. .|..|+.... ..|+.-+.++||...
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998 8999998874 268888888888764
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.61 E-value=0.11 Score=49.85 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 68 HGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
-+.||..+...++.++.+||. +|..||..|+|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 347999999999999999997 899999999999999998776666554
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.45 E-value=0.17 Score=44.80 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CCHHHHHh--hCCCCCHHHHHHHHHHHhhhH
Q 019787 66 IKHGEFTDEEDRLICSLFASIG---SRWSIIAA--QLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 66 lkkg~WT~EED~~Ll~lv~k~G---~kW~~IA~--~lpGRT~~qcknRw~~llkkk 116 (336)
-....||+.|-+.|+.++.+|| .+|..|+. .|.+||...|+..+..++..-
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3456899999999999999999 48999986 478999999998777666543
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=86.15 E-value=0.3 Score=36.53 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=36.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-Cccccccccc-cccCcccccceec
Q 019787 10 ANVKKGPWSPEEDSKLKEYIEKYGTGG-NWIALPQKAG-LKRCGKSCRLRWL 59 (336)
Q Consensus 10 p~lkKg~WT~EEDe~L~~lV~kyG~~~-nW~~IA~~l~-~gRt~kQCr~RW~ 59 (336)
+...+-.||+|..+++.++|.+.|... -++.|.+.|+ .+.|..+++-+.+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 345677899999999999999999521 3678877776 3556666655443
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.59 E-value=0.74 Score=43.29 Aligned_cols=29 Identities=38% Similarity=0.738 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccc
Q 019787 15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQK 44 (336)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~ 44 (336)
..|+.+||.+|+..|.+||. ++|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCT-TCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcC-CcHHHHhcC
Confidence 46999999999999999999 699999543
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.05 E-value=3.9 Score=38.33 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CHHHHHh--hCCCCCHHHHHHHHHHHhh
Q 019787 68 HGEFTDEEDRLICSLFASIGS---RWSIIAA--QLPGRTDNDIKNYWNTKLK 114 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~---kW~~IA~--~lpGRT~~qcknRw~~llk 114 (336)
+++||+-|-+.|++++.+||. +|..|+. .|+.|+...++.-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 578999999999999999994 8999976 6789999998888876664
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=68.00 E-value=25 Score=28.88 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=50.8
Q ss_pred CCCCCCCCCHHHH--HHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787 10 ANVKKGPWSPEED--SKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG 87 (336)
Q Consensus 10 p~lkKg~WT~EED--e~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G 87 (336)
++.-+.+|.+.+. +.|.++.+..|+ ....++. ++ +|. || =-.|..+|.+.|
T Consensus 3 ~~~~~~r~~~~~~Fl~~L~~F~~~rGt--pl~~~P~-i~-gk~-----------lD------------L~~Ly~~V~~~G 55 (121)
T 2rq5_A 3 LGSLGRRWGPNVQRLACIKKHLRSQGI--TMDELPL-IG-GCE-----------LD------------LACFFRLINEMG 55 (121)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHTTC--CCSSCCE-ET-TEE-----------CC------------HHHHHHHHHHTT
T ss_pred HHHhhHhcCCcHHHHHHHHHHHHHcCC--CCCCCCc-CC-CEe-----------cc------------HHHHHHHHHHcC
Confidence 3455678998885 567778888888 4444432 23 231 11 013777778887
Q ss_pred --------CCHHHHHhhC--CCC---CHHHHHHHHHHHhhh
Q 019787 88 --------SRWSIIAAQL--PGR---TDNDIKNYWNTKLKK 115 (336)
Q Consensus 88 --------~kW~~IA~~l--pGR---T~~qcknRw~~llkk 115 (336)
+.|.+||..| |.- ....+|.+|..+|-.
T Consensus 56 G~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 56 GMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp SHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 3699999988 322 246789988877754
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.17 E-value=9.4 Score=26.62 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 71 FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 71 WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
++ +.++.++.+.-..|-.+.+||..+ |-+...|+.+....+++.
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44 445555666666788999999999 889999998877665544
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=63.83 E-value=11 Score=27.12 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787 71 FTDEEDRLICSLFAS----IGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117 (336)
Q Consensus 71 WT~EED~~Ll~lv~k----~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~ 117 (336)
.++.| +.++.+.-- .|-.|.+||..+ |-|...|+.+....+++..
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 44444 444545443 467999999999 8999999998777666544
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.17 E-value=11 Score=26.64 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=30.3
Q ss_pred HHHHHHHHHHH----HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 74 EEDRLICSLFA----SIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 74 EED~~Ll~lv~----k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
+.++.++.+.- ..|-.+.+||..+ |-|...|+.+....+++.
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 33444444443 2467899999999 899999999887766554
No 102
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=53.05 E-value=11 Score=31.51 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787 74 EEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 74 EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~~ 119 (336)
+-|.+|+.+.++-|. .|.+||+.+ |=|...|+.|++.+....+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 568889999988776 899999999 899999999999888776543
No 103
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=52.94 E-value=58 Score=25.34 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccC------CCCCCCCCCHHHHHHHHHHHHHhCC
Q 019787 15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR------PNIKHGEFTDEEDRLICSLFASIGS 88 (336)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~------P~lkkg~WT~EED~~Ll~lv~k~G~ 88 (336)
...|.++-..++.++. -|. .-..||..++..| ..+ .||..... +.-.....|++++..|+.+...-+-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~--s~~~ia~~lgis~--~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV--SLHEMSRKISRSR--HCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--CHHHHHHHHTCCH--HHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC--CHHHHHHHHCcCH--HHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 3578888888887774 365 6788999988433 222 23332211 1112235888988888887333223
Q ss_pred CHHHHHhhCCC--CCHHHHHHHH
Q 019787 89 RWSIIAAQLPG--RTDNDIKNYW 109 (336)
Q Consensus 89 kW~~IA~~lpG--RT~~qcknRw 109 (336)
.-.+|+..| | -+...|....
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHHH
Confidence 456888888 4 5666665433
No 104
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=52.90 E-value=23 Score=34.69 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHH
Q 019787 69 GEFTDEEDRLICSLFASIGS-RWSIIAAQLP-GRTDNDIKNYWNTK 112 (336)
Q Consensus 69 g~WT~EED~~Ll~lv~k~G~-kW~~IA~~lp-GRT~~qcknRw~~l 112 (336)
+.||.-+=..++.++.+||. +-..||..|. |+|...|+......
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vF 169 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAF 169 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 46999888999999999997 5899999996 99999999544333
No 105
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.04 E-value=10 Score=33.26 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=19.5
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCC
Q 019787 10 ANVKKGPWSPEEDSKLK--------EYIEKYGT 34 (336)
Q Consensus 10 p~lkKg~WT~EEDe~L~--------~lV~kyG~ 34 (336)
|.-..|-||+|+|+.|. ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 44567889999999886 57788874
No 106
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=48.49 E-value=29 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 74 EEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 74 EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
+.++.++.++-..|-.-.+||..| |-+...|+.|....+++.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344555666556678899999999 899999998887665543
No 107
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.35 E-value=16 Score=29.50 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=28.9
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 79 ICSLFASIGS--------RWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 79 Ll~lv~k~G~--------kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
|..+|.+.|. .|..||..|.--.+..+|..|..+|-.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 7778888873 699999988333378899999888755
No 108
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=45.62 E-value=89 Score=25.34 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc------cCCCCC----CCCCCHHHHHHHHHHH
Q 019787 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY------LRPNIK----HGEFTDEEDRLICSLF 83 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~------L~P~lk----kg~WT~EED~~Ll~lv 83 (336)
....|.++-..++.++. -|. ....||..++..| .. -.||.+. +.+... ....++++.+.|++++
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~--s~~~IA~~lgis~--~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 96 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV--RPCDISRQLRVSH--GC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYK 96 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC--CHHHHHHHHTCCS--HH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC--CHHHHHHHHCcCH--HH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34689999888888885 465 7889999988332 22 2334332 222221 2347888888888888
Q ss_pred HHhCC-CHHHHHhhC---------CCCCHHHHHHHHH
Q 019787 84 ASIGS-RWSIIAAQL---------PGRTDNDIKNYWN 110 (336)
Q Consensus 84 ~k~G~-kW~~IA~~l---------pGRT~~qcknRw~ 110 (336)
.+... .-.+|+..+ ..-+...|....+
T Consensus 97 ~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 97 RQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp HHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred HHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 76432 334565544 1346666654433
No 109
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.69 E-value=43 Score=23.77 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 71 FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 71 WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
+|+.|-+.| .++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 566555554 445 5677899999999 88999999887766654
No 110
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=44.45 E-value=36 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.327 Sum_probs=27.3
Q ss_pred HHHHHHHhC--------CCHHHHHhhCCC-CC---HHHHHHHHHHHhhhH
Q 019787 79 ICSLFASIG--------SRWSIIAAQLPG-RT---DNDIKNYWNTKLKKK 116 (336)
Q Consensus 79 Ll~lv~k~G--------~kW~~IA~~lpG-RT---~~qcknRw~~llkkk 116 (336)
|..+|.+.| ..|.+||..|.- .+ ...+|..|..+|-.-
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 667777777 369999999922 22 467888888877653
No 111
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=42.82 E-value=36 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 73 DEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 73 ~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
.+-|..|+.++++.|. .+.+||+.+ |=+...|+.|.+.+.+..+.
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 3456778888877765 899999999 88999999999988877654
No 112
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=42.81 E-value=32 Score=27.73 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHHHhC--------CCHHHHHhhCCCC--C--HHHHHHHHHHHhhhH
Q 019787 79 ICSLFASIG--------SRWSIIAAQLPGR--T--DNDIKNYWNTKLKKK 116 (336)
Q Consensus 79 Ll~lv~k~G--------~kW~~IA~~lpGR--T--~~qcknRw~~llkkk 116 (336)
|..+|.+.| ..|.+||..|.-- + ...+|..|..+|-.-
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 777777887 3699999988221 1 467899998887653
No 113
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.65 E-value=36 Score=25.26 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 75 EDRLICSLFAS----IGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 75 ED~~Ll~lv~k----~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
.++.++.+.-- .|-.+.+||..+ |-|...|+.+-...+++.
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444544443 467899999999 899999998877666544
No 114
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=40.61 E-value=55 Score=26.83 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=25.5
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 86 IGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 86 ~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
.|-...+||..| |-+...|+.+....+++...
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 366899999999 89999999988766655433
No 115
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.17 E-value=41 Score=27.32 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=27.6
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCC--CC--HHHHHHHHHHHhhhH
Q 019787 79 ICSLFASIGS--------RWSIIAAQLPG--RT--DNDIKNYWNTKLKKK 116 (336)
Q Consensus 79 Ll~lv~k~G~--------kW~~IA~~lpG--RT--~~qcknRw~~llkkk 116 (336)
|..+|.+.|. .|.+||..|.- -+ ...+|..|..+|-.-
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 6677777773 69999998822 12 357899998888664
No 116
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.43 E-value=47 Score=23.09 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 69 GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 69 g~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
..+|+.|-+.|.. + ..|-.-.+||..+ |-+...|+.+...+.++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777766655 4 5677899999999 88999999888776654
No 117
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.39 E-value=61 Score=24.56 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 67 KHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 67 kkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
.....|+.|-+.|.-++ -|-.-.+||..| |-+...|+.+...++++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34568888877666554 788889999999 899999999988877653
No 118
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.28 E-value=47 Score=25.16 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 70 EFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 70 ~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467766665554 4 6788889999999 899999999887776654
No 119
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.84 E-value=33 Score=29.01 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 73 DEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 73 ~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
.+-|..|+.++++.|. .+.+||+.+ |-+...|+.|.+.+.+..+.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 4567788888887775 899999999 88999999999888776554
No 120
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=37.79 E-value=45 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=27.8
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCC-CC---HHHHHHHHHHHhhhH
Q 019787 79 ICSLFASIGS--------RWSIIAAQLPG-RT---DNDIKNYWNTKLKKK 116 (336)
Q Consensus 79 Ll~lv~k~G~--------kW~~IA~~lpG-RT---~~qcknRw~~llkkk 116 (336)
|..+|.+.|. .|.+||..|.- .+ ...+|..|..+|-.-
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 6777777773 69999998822 22 457899998888654
No 121
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.33 E-value=47 Score=24.46 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 70 EFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 70 ~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
.+|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 477777665554 4 5678899999999 89999999887766654
No 122
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=37.02 E-value=50 Score=26.11 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 019787 71 FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIK 106 (336)
Q Consensus 71 WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qck 106 (336)
=|+.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 367778888889999999999999999 77776553
No 123
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=36.98 E-value=8.4 Score=31.81 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCC------CCCccccccccccccCc----ccccceeccccCCCCCCCCCCHHHHHHHHHHHH
Q 019787 23 SKLKEYIEKYGT------GGNWIALPQKAGLKRCG----KSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFA 84 (336)
Q Consensus 23 e~L~~lV~kyG~------~~nW~~IA~~l~~gRt~----kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~ 84 (336)
-+|..+|.+.|- ...|..||..++...+. ...+..|.++|.|- ...+++|-+.|.+-|.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 367888888862 24899999999844322 35677888888763 3488899988887664
No 124
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=35.05 E-value=29 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 79 ICSLFASIGS--------RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 79 Ll~lv~k~G~--------kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
|..+|.+.|. .|.+||..|.--.+..+|..|..+|-.--.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 6677777763 599999988333389999999998877544
No 125
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=34.78 E-value=44 Score=27.10 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 74 EEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 74 EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
+-|..|+.+.++.|. .+.+||+.+ |-+...|..|.+.+....+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 456677788777775 899999999 89999999999988877654
No 126
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.43 E-value=50 Score=27.66 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHhCC--------CHHHHHhhC--CCC---CHHHHHHHHHHHhhhH
Q 019787 79 ICSLFASIGS--------RWSIIAAQL--PGR---TDNDIKNYWNTKLKKK 116 (336)
Q Consensus 79 Ll~lv~k~G~--------kW~~IA~~l--pGR---T~~qcknRw~~llkkk 116 (336)
|..+|.+.|. .|.+||..| +.. ....+|..|..+|-.-
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 6777777773 699999988 322 2568899998888654
No 127
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.41 E-value=70 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 75 EDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 75 ED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
.++.++.++-..|-...+||..+ |-|...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34555666666788999999999 89999999887655544
No 128
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.84 E-value=62 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHHHHHHhC--------CCHHHHHhhC--CCC---CHHHHHHHHHHHhhhH
Q 019787 78 LICSLFASIG--------SRWSIIAAQL--PGR---TDNDIKNYWNTKLKKK 116 (336)
Q Consensus 78 ~Ll~lv~k~G--------~kW~~IA~~l--pGR---T~~qcknRw~~llkkk 116 (336)
.|..+|.+.| ..|.+||..| +.. ....+|..|..+|-.-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3677777887 3699999988 322 2578899998888664
No 129
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=31.69 E-value=70 Score=26.90 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=24.5
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 85 k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
-.|-...+||..| |-|...|+.+....+++.
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 3466899999999 899999998876665543
No 130
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.52 E-value=59 Score=25.51 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=23.9
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 86 IGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 86 ~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
.|-...+||..| |-|...|+.+....+++.
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 466899999999 899999998876655443
No 131
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=31.47 E-value=31 Score=28.20 Aligned_cols=30 Identities=20% Similarity=0.077 Sum_probs=24.4
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 86 IGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 86 ~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
.|-...+||..| |-|...|+++....+++.
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 366789999999 899999999887766554
No 132
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.36 E-value=77 Score=21.25 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 76 DRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 76 D~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
+..++.++ ..|-.-.+||..| |-+...|+.+...++++.
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 34455553 5577888999999 899999999887776653
No 133
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=31.18 E-value=94 Score=24.77 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc------cCCCCC----CCCCCHHHHHHHHHHH
Q 019787 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY------LRPNIK----HGEFTDEEDRLICSLF 83 (336)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~------L~P~lk----kg~WT~EED~~Ll~lv 83 (336)
....|.|+-..++.++. -|. ....||..++.. .. .-.||.+. +.+... ....++++.+.|++++
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~--s~~~iA~~lgis--~~-TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV--RPCDISRQLRVS--HG-CVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC--CHHHHHHHHTCC--HH-HHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC--CHHHHHHHHCcC--HH-HHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 34689999888888884 465 678999998833 22 22334332 223222 2347888888888888
Q ss_pred HHhCC-CHHHHHhhC
Q 019787 84 ASIGS-RWSIIAAQL 97 (336)
Q Consensus 84 ~k~G~-kW~~IA~~l 97 (336)
.+... .-.+|+..+
T Consensus 104 ~~~~~~s~~~i~~~l 118 (149)
T 1k78_A 104 RQNPTMFAWEIRDRL 118 (149)
T ss_dssp HHCTTCCHHHHHHHH
T ss_pred HhCcchhHHHHHHHH
Confidence 76532 334565544
No 134
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.17 E-value=54 Score=26.33 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 019787 76 DRLICSLFASIGSRWSIIAAQLPGRTDNDIK 106 (336)
Q Consensus 76 D~~Ll~lv~k~G~kW~~IA~~lpGRT~~qck 106 (336)
|..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 4567777899999999999999 66666553
No 135
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=28.97 E-value=41 Score=29.44 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=19.9
Q ss_pred cccceeccccC-CCCCCCCCCHHHHHHHH
Q 019787 53 SCRLRWLNYLR-PNIKHGEFTDEEDRLIC 80 (336)
Q Consensus 53 QCr~RW~n~L~-P~lkkg~WT~EED~~Ll 80 (336)
.+-+.|..... |.-..|-||+|+|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 33445555444 56778999999999987
No 136
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=28.69 E-value=65 Score=26.02 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=25.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 019787 63 RPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDI 105 (336)
Q Consensus 63 ~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qc 105 (336)
.+.+-...=|++ .|..+....|..|..+|+.| |=+..+|
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp --CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred CchhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 333333444555 45666788999999999998 6666554
No 137
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=28.64 E-value=31 Score=26.62 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=25.4
Q ss_pred HHHHHHHhC--------CCHHHHHhhC--CC-C-CHHHHHHHHHHHhhh
Q 019787 79 ICSLFASIG--------SRWSIIAAQL--PG-R-TDNDIKNYWNTKLKK 115 (336)
Q Consensus 79 Ll~lv~k~G--------~kW~~IA~~l--pG-R-T~~qcknRw~~llkk 115 (336)
|..+|.+.| ..|.+||..| +. - ....+|..|..+|-.
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 677777776 3699999987 21 1 245778888766643
No 138
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=28.43 E-value=55 Score=24.31 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 70 EFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 70 ~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777666554 4 5677888999999 89999999988766654
No 139
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.43 E-value=1.1e+02 Score=18.82 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHH
Q 019787 70 EFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYW 109 (336)
Q Consensus 70 ~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw 109 (336)
..++++-..++.++ .-|-...+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35677776777766 3477899999999 78888776543
No 140
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.99 E-value=62 Score=26.10 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=26.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 019787 62 LRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDI 105 (336)
Q Consensus 62 L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qc 105 (336)
+.+.+-...=|++ .|..+....|..|..+|+.| |=+..+|
T Consensus 13 ~~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 13 IPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp ---CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred CCchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3444444445555 45666788999999999998 6666655
No 141
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=27.88 E-value=63 Score=26.51 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 73 DEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 73 ~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
.+-|..|+.++++.|. .+.+||+.+ |-+...|..|.+.+.+..+.
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 54 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGIV 54 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 3456677778777765 899999999 88999999999988877654
No 142
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=27.42 E-value=68 Score=26.03 Aligned_cols=44 Identities=14% Similarity=-0.050 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 74 EEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 74 EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
++++.++.+..-.|-.-.+||..| |-+...|+.|....+++...
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 334445555445577889999999 89999999998766655443
No 143
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.34 E-value=70 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787 74 EEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 74 EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~~ 119 (336)
+-|..|+.++++.|. .+.+||+.+ |=+...|+.|.+.+.+..+..
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCcc
Confidence 456678888877775 799999999 889999999999888776543
No 144
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=26.42 E-value=44 Score=26.28 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHhC--------CCHHHHHhhCC--CC---CHHHHHHHHHHHhhh
Q 019787 79 ICSLFASIG--------SRWSIIAAQLP--GR---TDNDIKNYWNTKLKK 115 (336)
Q Consensus 79 Ll~lv~k~G--------~kW~~IA~~lp--GR---T~~qcknRw~~llkk 115 (336)
|..+|.+.| ..|.+||..|. .. ....+|..|..+|-.
T Consensus 38 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 38 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 667777777 47999999882 21 235789999888754
No 145
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.90 E-value=1.3e+02 Score=23.17 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787 68 HGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116 (336)
Q Consensus 68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk 116 (336)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++.
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4568888887765533 688889999999 889999999887776653
No 146
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.87 E-value=1.1e+02 Score=21.41 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 019787 73 DEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKN 107 (336)
Q Consensus 73 ~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qckn 107 (336)
+-|.+.|.++...++.++++.|+.| |=+...+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3577888999999999999999988 555554443
No 147
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=23.99 E-value=80 Score=26.53 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 73 DEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 73 ~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
.+-|..|+.+.++-|. .+.+||+.+ |=|...|..|.+.+.+..+.
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~~l~~L~~~G~I 61 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQL-KKPESTIHFRIKKLQERGVI 61 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 3456677888777765 899999999 89999999999988877654
No 148
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.80 E-value=65 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787 74 EEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 74 EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~~ 119 (336)
+-|..|+.++++.|. .+.+||+.+ |=+...|..|.+.+.+..+..
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEE
Confidence 446677877777664 899999999 889999999999888776543
No 149
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.48 E-value=1.2e+02 Score=23.93 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787 71 FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115 (336)
Q Consensus 71 WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk 115 (336)
+|+.+ +.++.++-..|-.-.+||..+ |-|...|+.+.....++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 55544 455556556788899999999 89999999887665544
No 150
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.23 E-value=1.3e+02 Score=22.60 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHH
Q 019787 73 DEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNY 108 (336)
Q Consensus 73 ~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknR 108 (336)
.-|...|.++++++|.+.++.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 4577888999999999999999999 6666666544
No 151
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=23.03 E-value=95 Score=24.44 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787 75 EDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118 (336)
Q Consensus 75 ED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~ 118 (336)
-|..|+.++...|. .+.+||+.+ |-+...|+.+.+.+....+.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i 48 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45667777776664 899999999 89999999999888776554
No 152
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.97 E-value=24 Score=29.75 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=25.3
Q ss_pred ccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHH
Q 019787 40 ALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICS 81 (336)
Q Consensus 40 ~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~ 81 (336)
.||..+. |+|+.+||+.+. +. ..||+||++.|.+
T Consensus 120 ~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 120 TVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 5666776 899999998652 32 3599999988764
No 153
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=22.03 E-value=96 Score=24.39 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 019787 76 DRLICSLFASIGSRWSIIAAQLPGRTDNDIK 106 (336)
Q Consensus 76 D~~Ll~lv~k~G~kW~~IA~~lpGRT~~qck 106 (336)
+..|-.+....|..|..+|+.| |=+..+|.
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~ 47 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIR 47 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHH
Confidence 3455566678899999999999 66666553
No 154
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=20.29 E-value=1.1e+02 Score=24.43 Aligned_cols=45 Identities=4% Similarity=-0.052 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787 74 EEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119 (336)
Q Consensus 74 EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~~ 119 (336)
+-|..|+.++++.|. ...+||+.+ |-+...|..|.+.+.+..+..
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKI-KLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 446678888877775 799999999 889999999998887766543
Done!