BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019788
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 188 QVWRNDSEIYAHSGRLKTPYADELLGSKFCLH----VKGFEVNTARI 230
Q+ R++ E+ +G +T Y D L K CL +K VNT R+
Sbjct: 60 QLQRSEEELSNANGAFETSYIDALADPKICLRDIPFLKMLGVNTLRV 106
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 188 QVWRNDSEIYAHSGRLKTPYADELLGSKFCLH----VKGFEVNTARI 230
Q+ R++ E+ +G +T Y D L K CL +K VNT R+
Sbjct: 60 QLQRSEEELSNANGAFETSYIDALADPKICLRDIPFLKMLGVNTLRV 106
>pdb|2JFE|X Chain X, The Crystal Structure Of Human Cytosolic Beta-Glucosidase
Length = 469
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 213 GSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP--FADVLNWKSFSIV 263
G+ ++ KG + I D L G P++ H+DLP D W S +I+
Sbjct: 87 GTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQTLEDQGGWLSEAII 139
>pdb|2ZOX|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
Cytosolic Beta-Glucosidase
pdb|3VKK|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
Cytosolic Beta-Glucosidase-Mannose Complex
Length = 469
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 213 GSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP--FADVLNWKSFSIV 263
G+ ++ KG + I D L G P++ H+DLP D W S +I+
Sbjct: 87 GTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQTLEDQGGWLSEAII 139
>pdb|2E9L|A Chain A, Crystal Structure Of Human Cytosolic Neutral
Beta-Glycosylceramidase (Klotho-Related Prote:klrp)
Complex With Glucose And Fatty Acids
pdb|2E9M|A Chain A, Crystal Structure Of Human Cytosolic Neutral Beta-
Glycosylceramidase (Klotho-Related Prote:klrp) Complex
With Galactose And Fatty Acids
Length = 469
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 213 GSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP--FADVLNWKSFSIV 263
G+ ++ KG + I D L G P++ H+DLP D W S +I+
Sbjct: 87 GTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQTLEDQGGWLSEAII 139
>pdb|3U60|A Chain A, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
Length = 195
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 242 IIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGISSEEYLLLQSYVLKVRKHFQ 299
++A Y + D +N+KS I+ +PL+ K LKG+ ++++L + +K +K +
Sbjct: 125 LLAKRYQVNTNDAINYKS--ILTKNGKLPLVLKELKGLVTDDFLKEVTKNVKEQKQLK 180
>pdb|3U5Z|A Chain A, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|K Chain K, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U61|A Chain A, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 199
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 242 IIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGISSEEYLLLQSYVLKVRKHFQ 299
++A Y + D +N+KS I+ +PL+ K LKG+ ++++L + +K +K +
Sbjct: 125 LLAKRYQVNTNDAINYKS--ILTKNGKLPLVLKELKGLVTDDFLKEVTKNVKEQKQLK 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,630,652
Number of Sequences: 62578
Number of extensions: 436687
Number of successful extensions: 1093
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 9
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)