Query 019788
Match_columns 336
No_of_seqs 164 out of 820
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03016 Exostosin: Exostosin 100.0 1.3E-58 2.7E-63 436.5 21.4 276 2-279 2-302 (302)
2 KOG1021 Acetylglucosaminyltran 100.0 8.3E-57 1.8E-61 448.3 24.4 323 1-327 111-461 (464)
3 KOG2264 Exostosin EXT1L [Signa 100.0 2E-32 4.3E-37 265.7 14.7 290 2-325 193-529 (907)
4 KOG1022 Acetylglucosaminyltran 99.9 8.5E-25 1.8E-29 212.0 16.1 294 3-323 97-409 (691)
5 PF00852 Glyco_transf_10: Glyc 97.5 0.00024 5.1E-09 69.1 7.5 141 139-286 139-304 (349)
6 cd03801 GT1_YqgM_like This fam 97.3 0.0026 5.6E-08 58.8 11.7 94 205-301 267-363 (374)
7 PF00534 Glycos_transf_1: Glyc 97.2 0.0016 3.4E-08 55.6 7.9 85 204-291 83-169 (172)
8 cd03820 GT1_amsD_like This fam 97.1 0.0056 1.2E-07 56.4 11.5 95 205-301 244-340 (348)
9 cd03822 GT1_ecORF704_like This 97.1 0.0051 1.1E-07 57.8 10.8 93 205-301 259-355 (366)
10 PLN02871 UDP-sulfoquinovose:DA 97.1 0.0049 1.1E-07 61.9 11.2 96 205-303 323-423 (465)
11 cd03821 GT1_Bme6_like This fam 96.9 0.0085 1.9E-07 55.9 10.8 92 205-301 273-367 (375)
12 cd03814 GT1_like_2 This family 96.9 0.0031 6.8E-08 59.1 7.5 94 205-301 258-353 (364)
13 cd03818 GT1_ExpC_like This fam 96.9 0.013 2.8E-07 57.3 12.0 117 182-301 266-388 (396)
14 cd03794 GT1_wbuB_like This fam 96.8 0.013 2.7E-07 55.0 11.0 94 205-301 286-387 (394)
15 cd05844 GT1_like_7 Glycosyltra 96.8 0.023 5.1E-07 54.0 12.9 94 205-301 256-358 (367)
16 cd03819 GT1_WavL_like This fam 96.7 0.019 4.1E-07 54.3 11.8 94 204-300 254-352 (355)
17 cd03808 GT1_cap1E_like This fa 96.6 0.02 4.3E-07 53.0 11.0 92 205-299 255-349 (359)
18 cd03809 GT1_mtfB_like This fam 96.6 0.011 2.3E-07 55.6 9.2 92 205-301 264-357 (365)
19 TIGR03088 stp2 sugar transfera 96.5 0.023 4.9E-07 54.7 11.0 94 205-301 264-360 (374)
20 TIGR03449 mycothiol_MshA UDP-N 96.5 0.033 7.2E-07 54.2 12.3 95 205-302 294-390 (405)
21 cd03817 GT1_UGDG_like This fam 96.4 0.081 1.8E-06 49.4 13.8 90 205-298 270-361 (374)
22 PRK10307 putative glycosyl tra 96.4 0.021 4.6E-07 56.0 9.7 100 200-302 289-396 (412)
23 cd03823 GT1_ExpE7_like This fa 96.4 0.053 1.1E-06 50.5 12.0 87 205-294 254-343 (359)
24 PRK15427 colanic acid biosynth 96.3 0.052 1.1E-06 53.7 12.1 99 200-301 284-393 (406)
25 cd04962 GT1_like_5 This family 96.2 0.063 1.4E-06 51.1 11.9 93 206-301 263-358 (371)
26 cd03799 GT1_amsK_like This is 96.2 0.054 1.2E-06 50.9 11.2 94 205-301 247-349 (355)
27 cd03800 GT1_Sucrose_synthase T 96.0 0.027 5.8E-07 54.1 8.4 93 206-301 295-390 (398)
28 cd03798 GT1_wlbH_like This fam 96.0 0.035 7.7E-07 51.4 9.0 94 205-301 270-364 (377)
29 cd03811 GT1_WabH_like This fam 96.0 0.12 2.6E-06 47.5 12.1 81 206-289 256-341 (353)
30 TIGR02149 glgA_Coryne glycogen 95.9 0.077 1.7E-06 51.1 11.1 94 205-301 272-374 (388)
31 cd03807 GT1_WbnK_like This fam 95.8 0.08 1.7E-06 49.1 10.5 91 206-301 261-354 (365)
32 PRK15484 lipopolysaccharide 1, 95.8 0.098 2.1E-06 51.1 11.4 95 205-302 268-366 (380)
33 cd03804 GT1_wbaZ_like This fam 95.8 0.043 9.2E-07 52.3 8.6 79 197-279 244-323 (351)
34 cd04951 GT1_WbdM_like This fam 95.7 0.1 2.2E-06 49.1 10.7 91 205-300 254-347 (360)
35 TIGR02095 glgA glycogen/starch 95.7 0.1 2.2E-06 52.5 11.2 91 206-301 358-460 (473)
36 cd03805 GT1_ALG2_like This fam 95.6 0.17 3.6E-06 48.8 12.0 102 196-301 281-386 (392)
37 PRK14098 glycogen synthase; Pr 95.4 0.17 3.7E-06 51.4 11.8 92 206-302 374-474 (489)
38 PRK09814 beta-1,6-galactofuran 95.4 0.042 9.1E-07 52.7 7.1 88 205-298 218-316 (333)
39 cd04949 GT1_gtfA_like This fam 95.4 0.13 2.9E-06 49.2 10.5 94 205-301 270-366 (372)
40 cd03806 GT1_ALG11_like This fa 95.4 0.21 4.5E-06 49.6 12.0 130 169-302 273-415 (419)
41 PRK00654 glgA glycogen synthas 95.3 0.2 4.3E-06 50.5 11.7 91 206-301 349-450 (466)
42 cd03816 GT1_ALG1_like This fam 94.9 0.23 5E-06 49.1 10.7 119 169-295 269-399 (415)
43 PRK14099 glycogen synthase; Pr 94.9 0.34 7.4E-06 49.2 12.1 92 206-302 361-467 (485)
44 cd03825 GT1_wcfI_like This fam 94.8 0.12 2.5E-06 48.9 8.0 86 206-294 257-344 (365)
45 cd04955 GT1_like_6 This family 94.8 0.28 6E-06 46.3 10.5 97 199-301 252-352 (363)
46 cd03791 GT1_Glycogen_synthase_ 94.5 0.31 6.7E-06 48.8 10.8 84 206-292 363-457 (476)
47 cd03812 GT1_CapH_like This fam 94.5 0.33 7.1E-06 45.8 10.3 72 204-279 257-328 (358)
48 PF13524 Glyco_trans_1_2: Glyc 94.4 0.1 2.2E-06 39.9 5.4 81 217-301 2-84 (92)
49 cd03802 GT1_AviGT4_like This f 94.3 0.56 1.2E-05 43.7 11.3 77 198-279 227-305 (335)
50 cd03796 GT1_PIG-A_like This fa 94.1 0.34 7.4E-06 47.3 9.8 94 205-303 261-357 (398)
51 cd03813 GT1_like_3 This family 94.1 0.39 8.4E-06 48.4 10.4 92 206-300 363-463 (475)
52 cd03792 GT1_Trehalose_phosphor 94.1 0.52 1.1E-05 45.5 10.9 92 205-301 265-359 (372)
53 PRK09922 UDP-D-galactose:(gluc 93.9 0.44 9.6E-06 45.8 10.0 72 206-279 250-321 (359)
54 PF13692 Glyco_trans_1_4: Glyc 93.8 0.08 1.7E-06 43.1 4.1 76 197-278 55-131 (135)
55 KOG2619 Fucosyltransferase [Ca 93.6 0.45 9.7E-06 46.5 9.3 139 138-281 159-318 (372)
56 cd03795 GT1_like_4 This family 93.5 0.96 2.1E-05 42.4 11.5 98 200-300 249-353 (357)
57 TIGR03087 stp1 sugar transfera 93.5 0.32 6.8E-06 47.6 8.4 91 206-302 290-385 (397)
58 TIGR02918 accessory Sec system 93.5 1.6 3.5E-05 44.6 13.7 92 206-300 385-486 (500)
59 PLN02949 transferase, transfer 93.5 1.7 3.6E-05 44.0 13.7 102 197-301 337-444 (463)
60 cd04946 GT1_AmsK_like This fam 93.1 1.3 2.7E-05 43.7 11.9 92 206-300 301-398 (407)
61 TIGR02472 sucr_P_syn_N sucrose 92.5 0.29 6.3E-06 48.8 6.5 94 206-302 329-429 (439)
62 PRK15490 Vi polysaccharide bio 91.5 1.8 3.9E-05 44.8 10.8 65 205-272 464-528 (578)
63 PHA01633 putative glycosyl tra 91.1 0.5 1.1E-05 45.8 6.1 41 205-246 215-255 (335)
64 PHA01630 putative group 1 glyc 90.5 0.74 1.6E-05 44.4 6.8 41 205-246 201-241 (331)
65 TIGR00236 wecB UDP-N-acetylglu 89.4 6.3 0.00014 37.9 12.4 125 172-317 233-361 (365)
66 KOG1387 Glycosyltransferase [C 89.4 1.5 3.3E-05 42.5 7.6 89 205-298 348-443 (465)
67 PLN02605 monogalactosyldiacylg 89.3 5.4 0.00012 38.8 11.9 79 206-294 275-362 (382)
68 PLN02939 transferase, transfer 89.0 2.8 6E-05 46.0 10.2 91 208-302 851-955 (977)
69 TIGR02468 sucrsPsyn_pln sucros 88.9 2.6 5.7E-05 46.6 10.0 94 206-302 560-659 (1050)
70 PRK13609 diacylglycerol glucos 87.6 5.1 0.00011 38.7 10.4 81 206-295 266-353 (380)
71 cd03793 GT1_Glycogen_synthase_ 87.5 1.2 2.7E-05 46.0 6.2 99 204-303 465-576 (590)
72 PF00919 UPF0004: Uncharacteri 87.3 0.88 1.9E-05 36.0 4.0 34 27-61 8-42 (98)
73 PRK13608 diacylglycerol glucos 86.9 5 0.00011 39.3 9.9 83 206-297 266-355 (391)
74 TIGR01133 murG undecaprenyldip 85.5 1.9 4.1E-05 40.8 6.0 83 206-293 243-334 (348)
75 PLN02316 synthase/transferase 84.9 11 0.00023 42.0 12.0 93 209-303 915-1023(1036)
76 PRK05749 3-deoxy-D-manno-octul 84.4 5.3 0.00011 39.4 8.8 87 206-296 312-404 (425)
77 cd04950 GT1_like_1 Glycosyltra 83.4 1.7 3.8E-05 42.1 4.9 67 205-278 265-336 (373)
78 cd01635 Glycosyltransferase_GT 81.1 10 0.00023 32.3 8.6 76 169-246 135-213 (229)
79 PRK15179 Vi polysaccharide bio 80.7 12 0.00025 40.0 10.1 91 206-301 584-681 (694)
80 smart00672 CAP10 Putative lipo 77.7 20 0.00044 33.3 9.7 131 163-296 78-230 (256)
81 PRK00726 murG undecaprenyldiph 76.9 12 0.00027 35.5 8.4 84 206-294 245-338 (357)
82 PLN02275 transferase, transfer 76.6 11 0.00023 36.5 7.9 74 169-245 261-340 (371)
83 PLN00142 sucrose synthase 75.8 7.6 0.00017 42.0 7.0 92 209-303 661-760 (815)
84 cd03785 GT1_MurG MurG is an N- 75.1 12 0.00026 35.3 7.7 84 205-294 244-338 (350)
85 PRK10125 putative glycosyl tra 75.0 10 0.00022 37.4 7.4 66 206-275 299-364 (405)
86 TIGR03590 PseG pseudaminic aci 70.7 13 0.00027 34.8 6.5 32 206-243 234-265 (279)
87 COG0438 RfaG Glycosyltransfera 70.2 39 0.00085 30.1 9.6 46 200-246 262-308 (381)
88 cd03788 GT1_TPS Trehalose-6-Ph 68.9 7.9 0.00017 39.0 5.1 89 204-297 351-445 (460)
89 TIGR02470 sucr_synth sucrose s 64.9 18 0.0004 39.1 7.0 87 215-304 645-738 (784)
90 PF05686 Glyco_transf_90: Glyc 62.4 38 0.00082 33.6 8.3 130 163-294 152-297 (395)
91 TIGR02400 trehalose_OtsA alpha 59.9 28 0.0006 35.2 7.0 83 205-293 347-436 (456)
92 PRK00025 lpxB lipid-A-disaccha 54.4 21 0.00045 34.3 4.9 85 206-297 254-358 (380)
93 PRK14333 (dimethylallyl)adenos 54.3 21 0.00045 35.9 5.0 34 28-62 16-50 (448)
94 PLN02501 digalactosyldiacylgly 53.1 50 0.0011 35.5 7.6 38 208-246 613-650 (794)
95 PLN02846 digalactosyldiacylgly 52.2 49 0.0011 33.6 7.2 38 209-247 296-333 (462)
96 COG0707 MurG UDP-N-acetylgluco 52.0 89 0.0019 30.5 8.8 94 206-317 245-351 (357)
97 PRK14862 rimO ribosomal protei 51.7 25 0.00054 35.3 5.1 33 28-61 17-50 (440)
98 PRK14340 (dimethylallyl)adenos 50.7 26 0.00056 35.3 5.0 34 27-61 15-49 (445)
99 PRK14338 (dimethylallyl)adenos 48.0 27 0.00058 35.3 4.6 34 27-61 29-63 (459)
100 PRK14335 (dimethylallyl)adenos 46.6 29 0.00063 35.0 4.6 34 27-61 9-43 (455)
101 PRK14336 (dimethylallyl)adenos 45.7 30 0.00065 34.4 4.6 35 27-62 10-45 (418)
102 PRK14334 (dimethylallyl)adenos 44.1 33 0.00072 34.3 4.6 34 27-61 9-43 (440)
103 PRK14328 (dimethylallyl)adenos 43.7 32 0.0007 34.4 4.5 35 27-62 10-45 (439)
104 PRK14331 (dimethylallyl)adenos 43.5 36 0.00078 34.1 4.7 33 28-61 10-43 (437)
105 PRK14332 (dimethylallyl)adenos 42.3 41 0.00088 33.9 4.9 35 27-62 19-54 (449)
106 PRK14337 (dimethylallyl)adenos 41.1 42 0.00091 33.7 4.8 33 28-61 13-45 (446)
107 TIGR00661 MJ1255 conserved hyp 40.9 73 0.0016 30.1 6.2 67 205-277 239-310 (321)
108 PLN03063 alpha,alpha-trehalose 39.9 80 0.0017 34.4 7.0 84 205-293 367-457 (797)
109 PRK14325 (dimethylallyl)adenos 39.5 42 0.0009 33.6 4.5 34 28-62 13-47 (444)
110 KOG3185 Translation initiation 38.6 26 0.00057 31.2 2.5 33 213-245 20-52 (245)
111 PF13528 Glyco_trans_1_3: Glyc 38.3 78 0.0017 29.4 6.0 34 205-243 242-275 (318)
112 COG0621 MiaB 2-methylthioadeni 37.7 37 0.00081 34.2 3.8 43 277-320 275-323 (437)
113 TIGR01574 miaB-methiolase tRNA 36.6 48 0.001 33.2 4.4 35 27-62 8-44 (438)
114 TIGR01578 MiaB-like-B MiaB-lik 35.4 52 0.0011 32.8 4.4 35 27-62 8-43 (420)
115 PRK14327 (dimethylallyl)adenos 35.3 65 0.0014 33.1 5.2 35 26-61 74-109 (509)
116 PRK14329 (dimethylallyl)adenos 34.5 58 0.0013 33.0 4.6 35 27-62 32-67 (467)
117 TIGR00089 RNA modification enz 34.4 55 0.0012 32.6 4.4 35 27-62 8-43 (429)
118 PF06258 Mito_fiss_Elm1: Mitoc 34.3 95 0.0021 29.7 5.8 36 205-244 220-255 (311)
119 COG0297 GlgA Glycogen synthase 33.8 1.5E+02 0.0033 30.3 7.5 41 206-246 361-401 (487)
120 PRK14326 (dimethylallyl)adenos 33.3 74 0.0016 32.6 5.2 34 27-61 22-56 (502)
121 TIGR01125 MiaB-like tRNA modif 32.0 62 0.0013 32.2 4.3 35 27-62 8-43 (430)
122 PRK14330 (dimethylallyl)adenos 27.2 85 0.0018 31.3 4.4 34 27-61 9-43 (434)
123 PF15582 Imm40: Immunity prote 26.6 94 0.002 29.1 4.1 24 206-229 261-284 (327)
124 PF15024 Glyco_transf_18: Glyc 25.4 82 0.0018 32.7 3.8 48 200-250 327-375 (559)
125 PRK14501 putative bifunctional 25.3 84 0.0018 33.6 4.2 68 205-278 353-424 (726)
126 PF09851 SHOCT: Short C-termin 24.1 1E+02 0.0022 18.8 2.7 26 267-292 3-30 (31)
127 cd02133 PA_C5a_like PA_C5a_lik 23.6 1.3E+02 0.0027 25.0 4.2 42 206-247 40-81 (143)
128 cd00538 PA PA: Protease-associ 22.2 2.2E+02 0.0047 22.3 5.2 37 211-247 44-80 (126)
129 COG3980 spsG Spore coat polysa 21.4 1.9E+02 0.0041 27.7 5.1 68 166-238 157-247 (318)
130 TIGR00215 lpxB lipid-A-disacch 21.2 1.2E+02 0.0027 29.6 4.1 87 206-298 260-369 (385)
131 PF02444 HEV_ORF1: Hepatitis E 21.0 72 0.0016 25.1 1.9 34 212-245 14-47 (114)
132 COG2355 Zn-dependent dipeptida 20.6 48 0.001 31.9 1.1 70 221-290 145-214 (313)
No 1
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=1.3e-58 Score=436.51 Aligned_cols=276 Identities=35% Similarity=0.618 Sum_probs=222.9
Q ss_pred CCCCeEEEeCCCCCCCcccccC------CCCCCCCCcchHHHHHHHHHhcCCcccCCcCCccEEEEccccccccc-cCCC
Q 019788 2 NRSFRVYVYPHRRNDPFANVLL------PVDFEPRGNYASESYFKKAFMKSHFVTKDPSKADLFFLPFSIARMRH-DRRI 74 (336)
Q Consensus 2 ~~~~kIYVY~~~~~~~~~~~~~------p~~~~~~~~y~~E~~~~~~L~~S~~rT~dP~eAdlF~vP~~~~~~~~-~~~~ 74 (336)
.++|||||||++ +.|+..++ ....+..++|++|.+|+++|++|+++|+||+|||+||||++.++... ..+.
T Consensus 2 ~~~lkVYVY~lp--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~ 79 (302)
T PF03016_consen 2 HRGLKVYVYPLP--PKFNKDLLDPREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGS 79 (302)
T ss_pred CCCCEEEEEeCC--ccccccceeccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCC
Confidence 478999999999 45554443 12356789999999999999999999999999999999999887621 0110
Q ss_pred -CCCChhhHHHHHHHHhhhcCccccccCCCCeEEEeecCCcchhhhhhHHHhhceEEEe-ccCCCccCCcccCCccccCc
Q 019788 75 -GTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMQKAWEVKLNAIQVV-CSSSYFISGHIAHKDVSLPQ 152 (336)
Q Consensus 75 -~~~~~~~~l~~~~~~l~~~~PyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~~ai~l~-~~~~~~~~~frp~~Dv~iP~ 152 (336)
........+..++..+++++|||||++|+||||++++|+|.|.....+....+++.++ ..+++...+|+|++||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P~ 159 (302)
T PF03016_consen 80 PNSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIPP 159 (302)
T ss_pred ccchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCeeccc
Confidence 1122345566777777888999999999999999999999887665555555555444 34556789999999999998
Q ss_pred cCCCCC-CC----CCCCCCCCceEEEEeccCC-------chHHHHHHHHHhcCCCceEecCC----CchhHHHHhccccE
Q 019788 153 IWPRQE-DP----PKLGSSKRNKLAFFAGAVN-------SPVREKLLQVWRNDSEIYAHSGR----LKTPYADELLGSKF 216 (336)
Q Consensus 153 ~~~~~~-~~----~~~~~~~R~~l~~F~G~~~-------~~~R~~l~~~~~~~~~~~~~~g~----~~~~y~~~l~~S~F 216 (336)
..+... .. ...+..+|++|++|+|+.. +.+|+.|++.|.+.++..+..+. .+.+|.+.|++|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~F 239 (302)
T PF03016_consen 160 FVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDPDFRCSDGSETCPSPSEYMELLRNSKF 239 (302)
T ss_pred cccccccCCccccccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCCcceeeecccccccchHHHHhcccCeE
Confidence 765442 11 2345689999999999842 47999999999887765543221 23489999999999
Q ss_pred EEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC
Q 019788 217 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 217 cl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 279 (336)
||||+|+++++.||+|||.+|||||||+|++.|||+++|||++|||+|+++++++|+++|++|
T Consensus 240 CL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 240 CLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred EEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=8.3e-57 Score=448.35 Aligned_cols=323 Identities=34% Similarity=0.607 Sum_probs=259.5
Q ss_pred CCCCCeEEEeCCCCCCCcccccCCCCCCCCCcchHHHHHHHHH--hcCCcccCCcCCccEEEEccccccccccC-CC---
Q 019788 1 MNRSFRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKAF--MKSHFVTKDPSKADLFFLPFSIARMRHDR-RI--- 74 (336)
Q Consensus 1 m~~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L--~~S~~rT~dP~eAdlF~vP~~~~~~~~~~-~~--- 74 (336)
|+..+|||+|..+..+.+|. + .+|..++|++|..||+++ ..+++||.||++||+||||||.++..... ..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~---~-~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~ 186 (464)
T KOG1021|consen 111 NEKRGKVYVYHEGNKPLFHT---P-SWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDE 186 (464)
T ss_pred hcccCceEEecCCCCccccC---C-CcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCc
Confidence 56789999999885444432 2 357899999999999999 57899999999999999999998754311 11
Q ss_pred -CCCChhhHHHHHHHHhhhcCccccccCCCCeEEEeecCCcchhhhhhHHHhhceEEEeccCCCccCCcccC-CccccCc
Q 019788 75 -GTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMQKAWEVKLNAIQVVCSSSYFISGHIAH-KDVSLPQ 152 (336)
Q Consensus 75 -~~~~~~~~l~~~~~~l~~~~PyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~~ai~l~~~~~~~~~~frp~-~Dv~iP~ 152 (336)
......+.+++++..+++++|||||++|+||||+++|+|+............+.|...++.+.....+.+. +|++||+
T Consensus 187 ~~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~iP~ 266 (464)
T KOG1021|consen 187 RVNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFFPWNKDVAIPY 266 (464)
T ss_pred ccchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccccCCCcccCCC
Confidence 12245667788888888999999999999999999999987653211111111122222222355667777 9999998
Q ss_pred cCCCC---CC----CCCCCCCCCceEEEEecc-CCchHHHHHHHHHhcCCC----ceEecCCC----chhHHHHhccccE
Q 019788 153 IWPRQ---ED----PPKLGSSKRNKLAFFAGA-VNSPVREKLLQVWRNDSE----IYAHSGRL----KTPYADELLGSKF 216 (336)
Q Consensus 153 ~~~~~---~~----~~~~~~~~R~~l~~F~G~-~~~~~R~~l~~~~~~~~~----~~~~~g~~----~~~y~~~l~~S~F 216 (336)
..... .. ....+..+|++|++|+|+ .++.+|+.|+++|+++++ ..+..|.+ +..|.+.|++|+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~F 346 (464)
T KOG1021|consen 267 PTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPAGGQIRSILLDLWKKDPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKF 346 (464)
T ss_pred ccCcCccCccccccccCCCCCCCceEEEEeccccCCcHHHHHHHHhhcCcCccccccCCCCccccCCcchHHHHhhcCeE
Confidence 74332 11 124455799999999999 899999999999988222 22233422 3599999999999
Q ss_pred EEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhH-HHHHhCCCHHHHHHHHHHHHh-h
Q 019788 217 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLL-KKILKGISSEEYLLLQSYVLK-V 294 (336)
Q Consensus 217 cl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l-~~~L~~i~~~~~~~m~~~~~~-~ 294 (336)
||||+|++++|.|+||||.+|||||||+|++.+||++++||++|||+|++++++++ .++|.+++.+++.+||+++.+ +
T Consensus 347 CL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v 426 (464)
T KOG1021|consen 347 CLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIRLV 426 (464)
T ss_pred EECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 999999999999999999995 9
Q ss_pred hccceecc--CCCCccHHHHHHHHHHHHhhhcccc
Q 019788 295 RKHFQWHV--FPSDYDAFYMVMYELWLRRSSVRVQ 327 (336)
Q Consensus 295 ~~~f~y~~--~~~~~daf~~~~~~l~~rr~~~r~~ 327 (336)
.++|++.. +.+.+|||++++.++|+|+...+..
T Consensus 427 ~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~~~ 461 (464)
T KOG1021|consen 427 PRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLRSR 461 (464)
T ss_pred HhhEEeCCCCCCCcchhHHHHHhhhhhcccccccc
Confidence 99999998 7788999999999999999887743
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.98 E-value=2e-32 Score=265.68 Aligned_cols=290 Identities=19% Similarity=0.275 Sum_probs=206.2
Q ss_pred CCCCeEEEeCCCCCCCcccccCCCCCCCCCcch---HHHHHHHHHhcCCcccCCcCCccEEEEccccccccccCCCCCCC
Q 019788 2 NRSFRVYVYPHRRNDPFANVLLPVDFEPRGNYA---SESYFKKAFMKSHFVTKDPSKADLFFLPFSIARMRHDRRIGTEG 78 (336)
Q Consensus 2 ~~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~---~E~~~~~~L~~S~~rT~dP~eAdlF~vP~~~~~~~~~~~~~~~~ 78 (336)
.+.|.|||||.++.. + |++. ....|.+.+.+..|.|+||+.||++++-+ .......-..+.+
T Consensus 193 tSgfPVYvyd~D~~~-~------------G~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lv--ge~q~P~~l~p~e 257 (907)
T KOG2264|consen 193 TSGFPVYVYDSDIIT-S------------GQSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLV--GEIQSPVVLTPAE 257 (907)
T ss_pred cCCceeEEeccceee-c------------ccchHHHHHHHHHHhcccceeEeeCCCccEEEEEEe--ccccCCCcCChHh
Confidence 367999999977531 1 2222 34467788888999999999999999842 2222211112222
Q ss_pred hhhHHHHHHHHhhhcCccccccCCCCeEEEeecCCcc--hhhhhhHHHhhceEEEeccCCCccCCcccCCccccCcc-CC
Q 019788 79 IPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGR--SAMQKAWEVKLNAIQVVCSSSYFISGHIAHKDVSLPQI-WP 155 (336)
Q Consensus 79 ~~~~l~~~~~~l~~~~PyWnr~~G~dH~~v~~~d~g~--~~~~~~~~~~~~ai~l~~~~~~~~~~frp~~Dv~iP~~-~~ 155 (336)
++++ -++||| |++|+||++++.+.-.. .... .-..+.||.+ +++++...||||+|.++|+. ++
T Consensus 258 --------lekl-yslp~w-~~dg~Nhvl~Nl~r~s~~~n~ly--n~~t~raivv--Qssf~~~q~RpgfDl~V~pv~h~ 323 (907)
T KOG2264|consen 258 --------LEKL-YSLPHW-RTDGFNHVLFNLGRPSDTQNLLY--NFQTGRAIVV--QSSFYTVQIRPGFDLPVDPVNHI 323 (907)
T ss_pred --------hhhh-hcCccc-cCCCcceEEEEccCcccccccee--EeccCceEEE--eecceeeeeccCCCcccCccccc
Confidence 2232 468999 79999999998753110 0000 0012345544 66788999999999999755 33
Q ss_pred CCCC----CCCCCCCCCceEEEEeccCCc------hHHHHHHHHHhcCC-------CceEe-c-------CC--------
Q 019788 156 RQED----PPKLGSSKRNKLAFFAGAVNS------PVREKLLQVWRNDS-------EIYAH-S-------GR-------- 202 (336)
Q Consensus 156 ~~~~----~~~~~~~~R~~l~~F~G~~~~------~~R~~l~~~~~~~~-------~~~~~-~-------g~-------- 202 (336)
..++ ....-+.+|++|+.|+|++.+ +.+....++..+.+ ..+.+ + ..
T Consensus 324 ~~e~~~~e~~p~vP~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpewal 403 (907)
T KOG2264|consen 324 AVEKNFVELTPLVPFQRKYLITLQGKIESDNSSLNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEWAL 403 (907)
T ss_pred ccCccceecCcccchhhheeEEEEeeecccccccchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCCcchhhh
Confidence 3332 233456899999999997532 23333333322211 11111 1 01
Q ss_pred Cc--hhHHHHhccccEEE-eecCCCC-----CcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHH
Q 019788 203 LK--TPYADELLGSKFCL-HVKGFEV-----NTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKK 274 (336)
Q Consensus 203 ~~--~~y~~~l~~S~Fcl-~p~G~~~-----~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~ 274 (336)
|+ .+-.+++..|+||| .|+|++- .-.||+|||+.||||||+++...|||+|.|||.+.++++|.+++.+++-
T Consensus 404 cg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~tE~HF 483 (907)
T KOG2264|consen 404 CGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARLTEAHF 483 (907)
T ss_pred ccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccccchHHH
Confidence 21 36789999999998 5788864 3579999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhhccceeccCCCCccHHHHHHHHHHHHhhhcc
Q 019788 275 ILKGISSEEYLLLQSYVLKVRKHFQWHVFPSDYDAFYMVMYELWLRRSSVR 325 (336)
Q Consensus 275 ~L~~i~~~~~~~m~~~~~~~~~~f~y~~~~~~~daf~~~~~~l~~rr~~~r 325 (336)
+|+++.++++.+||+ +.+|+|+++.++.++..-++...++.|+.+.
T Consensus 484 llrs~~dsDll~mRR-----qGRl~wEtYls~~~~~~~tvlA~lR~rlqIP 529 (907)
T KOG2264|consen 484 LLRSFEDSDLLEMRR-----QGRLFWETYLSDRHLLARTVLAALRYRLQIP 529 (907)
T ss_pred HHHhcchhhHHHHHh-----hhhhhHHHHhhHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999 7789999999999987777778888887765
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.92 E-value=8.5e-25 Score=211.97 Aligned_cols=294 Identities=18% Similarity=0.173 Sum_probs=214.9
Q ss_pred CCCeEEEeCCCCCCCcccccCCCCC-CCCCcchHHHH-HHHHHhcCCcccCCcCCccEEEEccccccccccCCCCCCChh
Q 019788 3 RSFRVYVYPHRRNDPFANVLLPVDF-EPRGNYASESY-FKKAFMKSHFVTKDPSKADLFFLPFSIARMRHDRRIGTEGIP 80 (336)
Q Consensus 3 ~~~kIYVY~~~~~~~~~~~~~p~~~-~~~~~y~~E~~-~~~~L~~S~~rT~dP~eAdlF~vP~~~~~~~~~~~~~~~~~~ 80 (336)
.+.|||+|.++.- ++... ........|.. +.++...|.+.|.|+++||+|. | ..+.+++. -++.+
T Consensus 97 ~~~KvyIy~l~~~-------vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf~-P-s~d~lnQn-~l~~k--- 163 (691)
T KOG1022|consen 97 FETKVYIYMLGDI-------VDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLFM-P-SSDELNQN-PLSWK--- 163 (691)
T ss_pred cccceeEEehhhh-------hhhhcccccccccHHHHHHHHHHHhccceecCCCceEEEe-c-chhhhccC-cchHH---
Confidence 4689999998841 22211 12334455554 6688899999999999999998 4 34444442 22211
Q ss_pred hHHHHHHHHhhhcCccccccCCCCeEEEeecCCcchhhhhhHHH-hhceEEEeccCCCccCCcccCCccccCccCCCCCC
Q 019788 81 DFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMQKAWEV-KLNAIQVVCSSSYFISGHIAHKDVSLPQIWPRQED 159 (336)
Q Consensus 81 ~~l~~~~~~l~~~~PyWnr~~G~dH~~v~~~d~g~~~~~~~~~~-~~~ai~l~~~~~~~~~~frp~~Dv~iP~~~~~~~~ 159 (336)
++ +.+.+++-.|+| |.||..+++-+.|......+.+. ..+|+ ...+++.++.||++.||.||.++|....
T Consensus 164 --l~---~~ala~l~~wdr--g~nH~~fnmLpGg~p~yntaldv~~d~a~--~~gggf~tW~yr~g~dv~ipv~Sp~~v~ 234 (691)
T KOG1022|consen 164 --LE---KVALAKLLVWDR--GVNHEGFNMLPGGDPTYNTALDVGQDEAW--YSGGGFGTWKYRKGNDVYIPVRSPGNVG 234 (691)
T ss_pred --HH---HHHHhcccchhc--ccceeeEeeccCCCCCccccccCCcceeE--EecCCcCcccccCCCccccccccccccC
Confidence 11 112355678998 99999999877664332211111 22343 3356778999999999999999888666
Q ss_pred CCCCCCCCCceEEEEecc-CCchHHHHHHHHHhcCCCceEecCC-----------C----chhHHHHhccccEEEeecCC
Q 019788 160 PPKLGSSKRNKLAFFAGA-VNSPVREKLLQVWRNDSEIYAHSGR-----------L----KTPYADELLGSKFCLHVKGF 223 (336)
Q Consensus 160 ~~~~~~~~R~~l~~F~G~-~~~~~R~~l~~~~~~~~~~~~~~g~-----------~----~~~y~~~l~~S~Fcl~p~G~ 223 (336)
.+...+..|.+++.-.|- ++..+|..+.++...++...+..+. + ..+|...+...+||+.-+|.
T Consensus 235 ~~~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~fc~~~R~~ 314 (691)
T KOG1022|consen 235 RAFLYDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGFCDGDRVT 314 (691)
T ss_pred ccccCCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccccccccccceeeeEeccccc
Confidence 666666777776655553 6778999888887666554443322 2 13899999999999999999
Q ss_pred CCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCCCHHHHHHHHHHHHhhhccceeccC
Q 019788 224 EVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGISSEEYLLLQSYVLKVRKHFQWHVF 303 (336)
Q Consensus 224 ~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~~~~~~~m~~~~~~~~~~f~y~~~ 303 (336)
+.+.+-+.+-+.+||+|||..|.+.+||.+++||...||+++|..+.++.+.|+++....+.+||. |...++..+
T Consensus 315 r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~-----r~~~~rl~r 389 (691)
T KOG1022|consen 315 RGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQL-----RRIGSRLNR 389 (691)
T ss_pred cCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhh-----hhhhhhHhh
Confidence 888999999999999999999999999999999999999999999999999999999999999988 444445556
Q ss_pred CCCccHHHHHHHHHHHHhhh
Q 019788 304 PSDYDAFYMVMYELWLRRSS 323 (336)
Q Consensus 304 ~~~~daf~~~~~~l~~rr~~ 323 (336)
+.+.-+...++.+.+..|+.
T Consensus 390 f~~~~~~~l~~~~~i~~~ll 409 (691)
T KOG1022|consen 390 FPPFKRGFLLLLSSIGKRLL 409 (691)
T ss_pred cchHHHHHHHHHHHHhhhhh
Confidence 66666666666666665543
No 5
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=97.53 E-value=0.00024 Score=69.11 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=70.8
Q ss_pred cCCcccCCccccCccCCCCCC--CC----CCCCCCCc-eEEEEeccCCc-hHHHHHHHHHhcCCCceEecCCC-------
Q 019788 139 ISGHIAHKDVSLPQIWPRQED--PP----KLGSSKRN-KLAFFAGAVNS-PVREKLLQVWRNDSEIYAHSGRL------- 203 (336)
Q Consensus 139 ~~~frp~~Dv~iP~~~~~~~~--~~----~~~~~~R~-~l~~F~G~~~~-~~R~~l~~~~~~~~~~~~~~g~~------- 203 (336)
..+||.+.||.+|+....... .. .....+++ ..++++..+.. .-|..+++.+...-. +-..|.|
T Consensus 139 TMTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~~~-vd~yG~c~~~~~~~ 217 (349)
T PF00852_consen 139 TMTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKYIP-VDSYGKCGNNNPCP 217 (349)
T ss_dssp ----------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTTS--EEE-SSTT--SSS-
T ss_pred ccccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhhcC-eEccCCCCCCCCcc
Confidence 456888999999975432211 10 11223444 44555555432 359889888877632 3345666
Q ss_pred chhHHHHhccccEEEeecC---CCCCcchHHHHHhcCcEEEEEe--cc-c--ccCCCCCCCCCceEEEEcCCChhhHHHH
Q 019788 204 KTPYADELLGSKFCLHVKG---FEVNTARIADSLYYGCVPVIIA--NH-Y--DLPFADVLNWKSFSIVVATLDIPLLKKI 275 (336)
Q Consensus 204 ~~~y~~~l~~S~Fcl~p~G---~~~~s~rl~dal~~GcIPVii~--d~-~--~lPf~~~idw~~~sv~v~~~~~~~l~~~ 275 (336)
.....+.+++-+|.|+... .+..+-.||+|+.+|||||+.+ .. + .+|=...|+.++|. .+.+|.+.
T Consensus 218 ~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~La~y 291 (349)
T PF00852_consen 218 RDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKELADY 291 (349)
T ss_dssp -S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHHHHHH
T ss_pred cccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHHHHHH
Confidence 1368899999999999764 3456899999999999999999 42 2 36657778887773 56778888
Q ss_pred HhCCC--HHHHHH
Q 019788 276 LKGIS--SEEYLL 286 (336)
Q Consensus 276 L~~i~--~~~~~~ 286 (336)
|+.+. ++.+.+
T Consensus 292 l~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 292 LKYLDKNDELYNK 304 (349)
T ss_dssp HHHHHT-HHHHH-
T ss_pred HHHHhcCHHHHhh
Confidence 88773 444443
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.33 E-value=0.0026 Score=58.84 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=69.2
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.++.+.|.+|.+.++|.-....+..++||+++|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .++
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPE 343 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChH
Confidence 5889999999999999766666788999999998 6777664 3344555556777888888777777777664 456
Q ss_pred HHHHHHHHHH-hhhccceec
Q 019788 283 EYLLLQSYVL-KVRKHFQWH 301 (336)
Q Consensus 283 ~~~~m~~~~~-~~~~~f~y~ 301 (336)
...+|.++.. .+.+.+.|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 344 LRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 6777887776 455555443
No 7
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.19 E-value=0.0016 Score=55.59 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=55.9
Q ss_pred chhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCCC--H
Q 019788 204 KTPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGIS--S 281 (336)
Q Consensus 204 ~~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~--~ 281 (336)
..+..+.++.|.+.++|......+..+.|||.+|| |||+++.- .+.+++.=..-.+.++..++.++.+.+..+- +
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~~--~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDIG--GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESST--HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccccccccccceecccccccccccccccccccccc-ceeecccc--CCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 35889999999999999988888899999999999 66666621 1222221122446677778888777777653 3
Q ss_pred HHHHHHHHHH
Q 019788 282 EEYLLLQSYV 291 (336)
Q Consensus 282 ~~~~~m~~~~ 291 (336)
+...+|.++.
T Consensus 160 ~~~~~l~~~~ 169 (172)
T PF00534_consen 160 ELRQKLGKNA 169 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4455555544
No 8
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.12 E-value=0.0056 Score=56.43 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=67.6
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.+..+.|+++.+++.|.........++|||++||. ||.++....+ +++++-....+.++..++.++.+.+..+ +++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 47788999999999997666567889999999985 5555532222 1223333566777888877777666665 577
Q ss_pred HHHHHHHHHHhhhccceec
Q 019788 283 EYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 283 ~~~~m~~~~~~~~~~f~y~ 301 (336)
...+|.++..+..+.|.|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 322 LRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 7888888887777776554
No 9
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.06 E-value=0.0051 Score=57.81 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=67.5
Q ss_pred hhHHHHhccccEEEeecCCC--CCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--C
Q 019788 205 TPYADELLGSKFCLHVKGFE--VNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--S 280 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~--~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~ 280 (336)
.+..+.|+.|.+++.|.... ..+..+.|||++|+ |||.++.-. .+.+.+ ..-.+.++..+..++.+.|..+ +
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcC
Confidence 47889999999999998766 67788999999999 999887432 222333 3345667777777777766654 3
Q ss_pred HHHHHHHHHHHHhhhccceec
Q 019788 281 SEEYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 281 ~~~~~~m~~~~~~~~~~f~y~ 301 (336)
++...+|+++..+..+.|.|+
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 335 PELAQALRARAREYARAMSWE 355 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHH
Confidence 567888888888776666554
No 10
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.06 E-value=0.0049 Score=61.86 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=71.8
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCC---CCceEEEEcCCChhhHHHHHhCC--
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLN---WKSFSIVVATLDIPLLKKILKGI-- 279 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~id---w~~~sv~v~~~~~~~l~~~L~~i-- 279 (336)
.+..+.|+.+..++.|......+.-++|||++| +|||.++.-- ..++++ ..+..+.++..+..++.+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~gg--~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAGG--IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCCC--cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 478899999999999987766778899999999 7999887432 233343 26677788888888776666554
Q ss_pred CHHHHHHHHHHHHhhhccceeccC
Q 019788 280 SSEEYLLLQSYVLKVRKHFQWHVF 303 (336)
Q Consensus 280 ~~~~~~~m~~~~~~~~~~f~y~~~ 303 (336)
+++...+|.++.++....|.|...
T Consensus 400 ~~~~~~~~~~~a~~~~~~fsw~~~ 423 (465)
T PLN02871 400 DPELRERMGAAAREEVEKWDWRAA 423 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHH
Confidence 467778888888876666666543
No 11
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.91 E-value=0.0085 Score=55.95 Aligned_cols=92 Identities=15% Similarity=0.244 Sum_probs=60.2
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.+..+.+..|.++++|.-....+..++|||++|| |||.++.-- ..+.+.- ...+.++.+ ..++.+.+..+ .++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKVP--WQELIEY-GCGWVVDDD-VDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCCC--HHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHH
Confidence 3677889999999999766666788999999997 888776422 2222222 344444443 35555544443 346
Q ss_pred HHHHHHHHHHhh-hccceec
Q 019788 283 EYLLLQSYVLKV-RKHFQWH 301 (336)
Q Consensus 283 ~~~~m~~~~~~~-~~~f~y~ 301 (336)
...+|.++.++. .++|.|+
T Consensus 348 ~~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 348 RLKAMGENGRALVEERFSWT 367 (375)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 778888877765 6666554
No 12
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.87 E-value=0.0031 Score=59.11 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=67.7
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.+..+.|+.|..+++|.+.......++|||++|| |||.++.-. ..+.+.=....+.++..+..++.+.+..+ .++
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 4788899999999999877777788999999999 788777432 23334324566677777776666655554 577
Q ss_pred HHHHHHHHHHhhhccceec
Q 019788 283 EYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 283 ~~~~m~~~~~~~~~~f~y~ 301 (336)
...+|.++..+....+.|+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 335 LRRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHHhhcCHH
Confidence 7888888877765555443
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.86 E-value=0.013 Score=57.31 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=76.5
Q ss_pred HHHHHHHHHhc--CCCceEecCCCc-hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCC
Q 019788 182 VREKLLQVWRN--DSEIYAHSGRLK-TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWK 258 (336)
Q Consensus 182 ~R~~l~~~~~~--~~~~~~~~g~~~-~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~ 258 (336)
.++.+.+.... ..+.+...|..+ .++.+.|+.|..++.|.-....+.-++|||++|| |||.++.- +..+++.=.
T Consensus 266 ~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~--g~~e~i~~~ 342 (396)
T cd03818 266 WKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA--PVREVITDG 342 (396)
T ss_pred HHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC--CchhhcccC
Confidence 45555555432 223344567654 4788899999999887654444567999999999 88877642 445666545
Q ss_pred ceEEEEcCCChhhHHHHHhCC--CHHHHHHHHHHHHh-hhccceec
Q 019788 259 SFSIVVATLDIPLLKKILKGI--SSEEYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 259 ~~sv~v~~~~~~~l~~~L~~i--~~~~~~~m~~~~~~-~~~~f~y~ 301 (336)
.-.+.++..+...+.+.+..+ .++...+|.++.++ +.++|.|+
T Consensus 343 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 343 ENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred CceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHH
Confidence 567778888877666655543 45667778777765 33445543
No 14
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.80 E-value=0.013 Score=54.96 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=64.9
Q ss_pred hhHHHHhccccEEEeecCCCCC-----cchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC
Q 019788 205 TPYADELLGSKFCLHVKGFEVN-----TARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~-----s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 279 (336)
.+..+.|..+.++++|...+.. ...++||+++|| |||.++.-..+ +.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESA--ELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCch--hhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 4788899999999999765543 556899999997 88877643221 122112556677777887777777665
Q ss_pred --CHHHHHHHHHHHHhhhc-cceec
Q 019788 280 --SSEEYLLLQSYVLKVRK-HFQWH 301 (336)
Q Consensus 280 --~~~~~~~m~~~~~~~~~-~f~y~ 301 (336)
++++..+|.++..+... +|.|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHhhcHH
Confidence 67778888877765443 55444
No 15
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.78 E-value=0.023 Score=54.04 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=64.5
Q ss_pred hhHHHHhccccEEEeecCC------CCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhC
Q 019788 205 TPYADELLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKG 278 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 278 (336)
.+..+.+..|..+++|.-. ......++|||++|| |||.++.-. ..+.+.=....+.++..+..++.+.|..
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHH
Confidence 4677889999988887532 224678999999997 999887533 2333433456778888888777766655
Q ss_pred C--CHHHHHHHHHHHHh-hhccceec
Q 019788 279 I--SSEEYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 279 i--~~~~~~~m~~~~~~-~~~~f~y~ 301 (336)
+ +++...+|.++.++ +.++|.|+
T Consensus 333 l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 333 LLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 4 45667778777665 45666554
No 16
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.74 E-value=0.019 Score=54.26 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=66.4
Q ss_pred chhHHHHhccccEEEeec-CCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHh-CC--
Q 019788 204 KTPYADELLGSKFCLHVK-GFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILK-GI-- 279 (336)
Q Consensus 204 ~~~y~~~l~~S~Fcl~p~-G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~-~i-- 279 (336)
..+..+.|+.|..+++|. -......-++|||++|| |||.++. -+..+.+.-..-.+.++..+...+.+.|. .+
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 347889999999999886 33345578999999999 7887763 23455555555667778888888777763 22
Q ss_pred CHHHHHHHHHHHHhh-hcccee
Q 019788 280 SSEEYLLLQSYVLKV-RKHFQW 300 (336)
Q Consensus 280 ~~~~~~~m~~~~~~~-~~~f~y 300 (336)
++++..+|.++.++. ..+|.|
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~ 352 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSY 352 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhh
Confidence 577888888877754 444444
No 17
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.64 E-value=0.02 Score=52.98 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=63.1
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.+..+.++.|.++++|......+..++|||.+|| |||.++.-.. .+.+.=....+.++.++..++.+.+..+ +++
T Consensus 255 ~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~~--~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 255 DDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPGC--REAVIDGVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred ccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCCc--hhhhhcCcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 3677889999999999776667788999999996 7777764322 2333223455677777777766666553 466
Q ss_pred HHHHHHHHHHhh-hccce
Q 019788 283 EYLLLQSYVLKV-RKHFQ 299 (336)
Q Consensus 283 ~~~~m~~~~~~~-~~~f~ 299 (336)
...+|.++.++. ..+|.
T Consensus 332 ~~~~~~~~~~~~~~~~~s 349 (359)
T cd03808 332 LRARMGQAARKRAEEEFD 349 (359)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 777777766554 55543
No 18
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.64 E-value=0.011 Score=55.64 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=66.0
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhC-C-CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKG-I-SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-i-~~~ 282 (336)
.+..+.++.+.+++.|.-....+..++|||++|| |||.++.- ...+.+ .+..+.++..+..++.+.|.. + +++
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 3778899999999988654445677999999997 77776642 223334 345667777788777777766 3 567
Q ss_pred HHHHHHHHHHhhhccceec
Q 019788 283 EYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 283 ~~~~m~~~~~~~~~~f~y~ 301 (336)
...+|.++.+++.+.|.|+
T Consensus 339 ~~~~~~~~~~~~~~~~sw~ 357 (365)
T cd03809 339 LREELRERGLARAKRFSWE 357 (365)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 7788888877777776665
No 19
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.54 E-value=0.023 Score=54.73 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=64.9
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.+..+.|+.|..+++|.-......-++|||++|+ |||.+|.-. ..+++.-....+.++..+..++.+.|..+ +++
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~g--~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVGG--NPELVQHGVTGALVPPGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCCC--cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 4678889999999888655556778999999996 999988422 33445445567778888887776666554 355
Q ss_pred HHHHHHHHHHh-hhccceec
Q 019788 283 EYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 283 ~~~~m~~~~~~-~~~~f~y~ 301 (336)
...+|.++.++ +.+.|.|+
T Consensus 341 ~~~~~~~~a~~~~~~~fs~~ 360 (374)
T TIGR03088 341 ARRAHGAAGRARAEQQFSIN 360 (374)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 56666666554 34565444
No 20
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.54 E-value=0.033 Score=54.25 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=65.6
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.+..+.|+.|..++.|.-......-+.|||++|| |||.++.-- ..+.+.=....+.++..+..++.+.+..+ +++
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADALARLLDDPR 370 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHHHHHHHhCHH
Confidence 4778899999998888644445677999999997 888877422 22344323455677777877766555443 456
Q ss_pred HHHHHHHHHHhhhccceecc
Q 019788 283 EYLLLQSYVLKVRKHFQWHV 302 (336)
Q Consensus 283 ~~~~m~~~~~~~~~~f~y~~ 302 (336)
...+|.++..+..+.|.|+.
T Consensus 371 ~~~~~~~~~~~~~~~fsw~~ 390 (405)
T TIGR03449 371 TRIRMGAAAVEHAAGFSWAA 390 (405)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 77888888877666666654
No 21
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=96.44 E-value=0.081 Score=49.37 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 282 (336)
.+..+.++.|.+.++|......+..++|||++|+ |||.++.- .+.+.+.=..-.+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 4788899999999999876666788999999987 66666532 22333433344556666553 333333332 355
Q ss_pred HHHHHHHHHHhhhccc
Q 019788 283 EYLLLQSYVLKVRKHF 298 (336)
Q Consensus 283 ~~~~m~~~~~~~~~~f 298 (336)
..++|+++.++....+
T Consensus 346 ~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 346 LRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678888777766553
No 22
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.35 E-value=0.021 Score=55.99 Aligned_cols=100 Identities=8% Similarity=0.032 Sum_probs=68.3
Q ss_pred cCCCc-hhHHHHhccccEEEeecCCCC----CcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHH
Q 019788 200 SGRLK-TPYADELLGSKFCLHVKGFEV----NTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKK 274 (336)
Q Consensus 200 ~g~~~-~~y~~~l~~S~Fcl~p~G~~~----~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~ 274 (336)
.|..+ .+..+.++.|..++.|.-.+. ....++|||++| +|||.++.--....+++. .-.+.++..+..++.+
T Consensus 289 ~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~ 365 (412)
T PRK10307 289 LPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALVA 365 (412)
T ss_pred eCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHH
Confidence 44433 477888999999988743222 234689999999 488888642222334555 4577788888888888
Q ss_pred HHhCC--CHHHHHHHHHHHHh-hhccceecc
Q 019788 275 ILKGI--SSEEYLLLQSYVLK-VRKHFQWHV 302 (336)
Q Consensus 275 ~L~~i--~~~~~~~m~~~~~~-~~~~f~y~~ 302 (336)
.|..+ +++...+|+++.++ +.++|.|+.
T Consensus 366 ~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 396 (412)
T PRK10307 366 AIAALARQALLRPKLGTVAREYAERTLDKEN 396 (412)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 77665 46677888888876 556776654
No 23
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.35 E-value=0.053 Score=50.52 Aligned_cols=87 Identities=16% Similarity=0.050 Sum_probs=61.1
Q ss_pred hhHHHHhccccEEEeecC-CCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CH
Q 019788 205 TPYADELLGSKFCLHVKG-FEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SS 281 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G-~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 281 (336)
.+..+.++.|..+++|.- .......+.|||++| +|||.++.- ...+.++-....+.++..+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 478889999999999963 344567899999999 577777632 233445555567888888877766665554 46
Q ss_pred HHHHHHHHHHHhh
Q 019788 282 EEYLLLQSYVLKV 294 (336)
Q Consensus 282 ~~~~~m~~~~~~~ 294 (336)
+...+|+++.++.
T Consensus 331 ~~~~~~~~~~~~~ 343 (359)
T cd03823 331 DLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHhHHHh
Confidence 6677777766443
No 24
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.29 E-value=0.052 Score=53.69 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=67.1
Q ss_pred cCCCc-hhHHHHhccccEEEeecCC------CCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhH
Q 019788 200 SGRLK-TPYADELLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLL 272 (336)
Q Consensus 200 ~g~~~-~~y~~~l~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l 272 (336)
.|..+ .+..+.++.+..++.|.=. .....-++|||++|+ |||.++.--. .+++.=..-.+.+++.+..++
T Consensus 284 ~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g~--~E~v~~~~~G~lv~~~d~~~l 360 (406)
T PRK15427 284 PGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSGI--PELVEADKSGWLVPENDAQAL 360 (406)
T ss_pred eCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCCc--hhhhcCCCceEEeCCCCHHHH
Confidence 34433 4778899999999988521 223467999999996 9998874322 244433455677888888877
Q ss_pred HHHHhCC---CHHHHHHHHHHHHh-hhccceec
Q 019788 273 KKILKGI---SSEEYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 273 ~~~L~~i---~~~~~~~m~~~~~~-~~~~f~y~ 301 (336)
.+.+..+ +++...+|.++.++ +.++|-|+
T Consensus 361 a~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 361 AQRLAAFSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 7776654 56778888887764 45665443
No 25
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.21 E-value=0.063 Score=51.14 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=66.3
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHHH
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSEE 283 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~~ 283 (336)
+..+.|+.|..++.|.-.......+.|||++| +|||.++.-. ..+.+.-..-...++..+..++.+.+..+ +++.
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAGG--IPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDEL 339 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCCC--chhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHH
Confidence 67888999999999975555567899999999 6888887532 34445444445667777877766655543 5677
Q ss_pred HHHHHHHHHhh-hccceec
Q 019788 284 YLLLQSYVLKV-RKHFQWH 301 (336)
Q Consensus 284 ~~~m~~~~~~~-~~~f~y~ 301 (336)
..+|+++.++. .++|.|+
T Consensus 340 ~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 340 WQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 88888888775 5665443
No 26
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=96.20 E-value=0.054 Score=50.94 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=61.5
Q ss_pred hhHHHHhccccEEEeecCC------CCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhC
Q 019788 205 TPYADELLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKG 278 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 278 (336)
.+..+.++++.++++|... ......++|||.+|| |||.++.- ...+.+.=..-...+++.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~-Pvi~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGL-PVISTDVS--GIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCC-CEEecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 4788899999999998654 345688999999998 45555532 23344432334566777777666665554
Q ss_pred C--CHHHHHHHHHHHHh-hhccceec
Q 019788 279 I--SSEEYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 279 i--~~~~~~~m~~~~~~-~~~~f~y~ 301 (336)
+ .+++..+|.++.++ +...|.|+
T Consensus 324 ~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 324 LLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 4 45667778777764 44555444
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.04 E-value=0.027 Score=54.11 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=65.6
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHHH
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSEE 283 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~~ 283 (336)
+..+.++.|..+++|.-.......++|||++|+ |||.++.- ...+.+.=....+.++..+..++.+.+..+ +++.
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~-Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 371 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGL-PVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPAL 371 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCC-CEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 577789999999999766566678999999995 99988742 233344333556777877777766665554 4677
Q ss_pred HHHHHHHHHhhh-ccceec
Q 019788 284 YLLLQSYVLKVR-KHFQWH 301 (336)
Q Consensus 284 ~~~m~~~~~~~~-~~f~y~ 301 (336)
..+|.++.++.. ++|.|+
T Consensus 372 ~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 372 RRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 788888776543 666554
No 28
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=96.03 E-value=0.035 Score=51.45 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=60.4
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC-CHHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI-SSEE 283 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i-~~~~ 283 (336)
.+..+.+.+|.++++|......+..++||+++|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+ .+.+
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcH
Confidence 3678999999999999877667888999999999 677766321 22334334445677777877666655553 2222
Q ss_pred HHHHHHHHHhhhccceec
Q 019788 284 YLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 284 ~~~m~~~~~~~~~~f~y~ 301 (336)
....+++...+.+.|.|+
T Consensus 347 ~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 347 LRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHhHHHHHHHHHHhhHH
Confidence 233344444556665444
No 29
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.95 E-value=0.12 Score=47.49 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=52.8
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhH----HHHHhCCC-
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLL----KKILKGIS- 280 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l----~~~L~~i~- 280 (336)
+..+.+..|.++++|.........++|||.+|| |||.++.- ...+.+.=....+.++.++...+ ..++....
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~-PvI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGT-PVVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCC-CEEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 456789999999999765556778999999998 56665533 22344443455667788777665 33333332
Q ss_pred HHHHHHHHH
Q 019788 281 SEEYLLLQS 289 (336)
Q Consensus 281 ~~~~~~m~~ 289 (336)
++...+|..
T Consensus 333 ~~~~~~~~~ 341 (353)
T cd03811 333 PELRERLAA 341 (353)
T ss_pred hHHHHHHHH
Confidence 445555666
No 30
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=95.93 E-value=0.077 Score=51.09 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=62.7
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCCh------hhHHHHHhC
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDI------PLLKKILKG 278 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~------~~l~~~L~~ 278 (336)
.+..+.++.|..+++|.-......-++|||++|| |||.++.-. ..+++.=....+.++..+. ..+.+.|..
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 4678889999999998655555677899999999 888887432 2233432344556666555 555555544
Q ss_pred C--CHHHHHHHHHHHHh-hhccceec
Q 019788 279 I--SSEEYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 279 i--~~~~~~~m~~~~~~-~~~~f~y~ 301 (336)
+ ++++..+|.++.++ +.+.|.|+
T Consensus 349 l~~~~~~~~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 349 LLADPELAKKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 3 56777788777765 45566554
No 31
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=95.84 E-value=0.08 Score=49.13 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=60.3
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHHH
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSEE 283 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~~ 283 (336)
+..+.|+.|..+++|......+.-+.|||++|| |||.++.-. ..+.+. +..+.++..+..++.+.+..+ .++.
T Consensus 261 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~--~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (365)
T cd03807 261 DVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVG--DTGFLVPPGDPEALAEAIEALLADPAL 335 (365)
T ss_pred cHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhh--cCCEEeCCCCHHHHHHHHHHHHhChHH
Confidence 567889999999999877667788999999996 788776321 122221 145666777776666655554 3456
Q ss_pred HHHHHHHHHh-hhccceec
Q 019788 284 YLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 284 ~~~m~~~~~~-~~~~f~y~ 301 (336)
..+|.++..+ +.+.|.|+
T Consensus 336 ~~~~~~~~~~~~~~~~s~~ 354 (365)
T cd03807 336 RQALGEAARERIEENFSIE 354 (365)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 6666666654 45555554
No 32
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.81 E-value=0.098 Score=51.10 Aligned_cols=95 Identities=7% Similarity=0.067 Sum_probs=60.4
Q ss_pred hhHHHHhccccEEEeecCC-CCCcchHHHHHhcCcEEEEEecccccCCCCCC-CCCceEEEEcCCChhhHHHHHhCC-CH
Q 019788 205 TPYADELLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADVL-NWKSFSIVVATLDIPLLKKILKGI-SS 281 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~~~sv~v~~~~~~~l~~~L~~i-~~ 281 (336)
.+..+.++.|..+++|... .....-++|||++| +|||.++.-- ..+++ |-..-.+.++..+..++.+.|..+ ++
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4677889999999998753 44557799999999 6899887522 22333 322222345666776666655443 33
Q ss_pred HHHHHHHHHHHh-hhccceecc
Q 019788 282 EEYLLLQSYVLK-VRKHFQWHV 302 (336)
Q Consensus 282 ~~~~~m~~~~~~-~~~~f~y~~ 302 (336)
.+..+|.++.++ +.++|.|+.
T Consensus 345 ~~~~~~~~~ar~~~~~~fsw~~ 366 (380)
T PRK15484 345 PELTQIAEQAKDFVFSKYSWEG 366 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 445677776664 566665553
No 33
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.79 E-value=0.043 Score=52.33 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=52.0
Q ss_pred eEecCCCc-hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHH
Q 019788 197 YAHSGRLK-TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKI 275 (336)
Q Consensus 197 ~~~~g~~~-~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~ 275 (336)
+...|..+ .+..+.++.+..+++|.- ......++|||++|| |||.++.-.. .+.+.=.+..+.++..+...+.+.
T Consensus 244 V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~~--~e~i~~~~~G~~~~~~~~~~la~~ 319 (351)
T cd03804 244 VTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGGA--LETVIDGVTGILFEEQTVESLAAA 319 (351)
T ss_pred EEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCCC--cceeeCCCCEEEeCCCCHHHHHHH
Confidence 33345443 368899999999998865 334566899999998 9998874222 233322345677777777666655
Q ss_pred HhCC
Q 019788 276 LKGI 279 (336)
Q Consensus 276 L~~i 279 (336)
|..+
T Consensus 320 i~~l 323 (351)
T cd03804 320 VERF 323 (351)
T ss_pred HHHH
Confidence 5544
No 34
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=95.69 E-value=0.1 Score=49.13 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=58.2
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC---CH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI---SS 281 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i---~~ 281 (336)
.+..+.|+.|...+.|.........++|||++|| |||.+|.-. ..+.+. +....++..+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~~--~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAGG--VREVVG--DSGLIVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCCC--hhhEec--CCceEeCCCCHHHHHHHHHHHHhCCH
Confidence 3667889999999998776666788999999999 888877421 222221 134455667776666655543 45
Q ss_pred HHHHHHHHHHHhhhcccee
Q 019788 282 EEYLLLQSYVLKVRKHFQW 300 (336)
Q Consensus 282 ~~~~~m~~~~~~~~~~f~y 300 (336)
+....|..+...+.+.|.|
T Consensus 329 ~~~~~~~~~~~~~~~~~s~ 347 (360)
T cd04951 329 EERDIIGARRERIVKKFSI 347 (360)
T ss_pred HHHHHHHHHHHHHHHhcCH
Confidence 5555555553345555544
No 35
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.68 E-value=0.1 Score=52.47 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=59.0
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCC-CCC-----ceEEEEcCCChhhHHHHHhCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVL-NWK-----SFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~-----~~sv~v~~~~~~~l~~~L~~i 279 (336)
...+.++.|.++++|.-..+...-..|||++||.||+ ++.-- ..+++ |.+ .-.+.+++.+..++.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~gg--~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTGG--LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCCC--ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 4567899999999998777777889999999996665 44211 22222 321 556777887877665555442
Q ss_pred ------CHHHHHHHHHHHHhhhccceec
Q 019788 280 ------SSEEYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 280 ------~~~~~~~m~~~~~~~~~~f~y~ 301 (336)
.++...+|.++.. .+.|.|+
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~ 460 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWD 460 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcH
Confidence 4556667766543 3455554
No 36
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.60 E-value=0.17 Score=48.84 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=63.2
Q ss_pred ceEecCCCch-hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHH
Q 019788 196 IYAHSGRLKT-PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKK 274 (336)
Q Consensus 196 ~~~~~g~~~~-~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~ 274 (336)
.+...|..+. +..+.++.|.++++|........-++|||++|| |||.++.-- ..+.+.-..-.+.++. +..++.+
T Consensus 281 ~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a~ 356 (392)
T cd03805 281 QVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGK-PVIACNSGG--PLETVVDGETGFLCEP-TPEEFAE 356 (392)
T ss_pred eEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCC-CEEEECCCC--cHHHhccCCceEEeCC-CHHHHHH
Confidence 3444565443 567889999999988766555677899999995 777776421 1233322233444554 5555555
Q ss_pred HHhCC--CHHHHHHHHHHHHh-hhccceec
Q 019788 275 ILKGI--SSEEYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 275 ~L~~i--~~~~~~~m~~~~~~-~~~~f~y~ 301 (336)
.+..+ .++...+|+++.++ +.+.|.|+
T Consensus 357 ~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 357 AMLKLANDPDLADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhcCHH
Confidence 44443 35567888877765 45666554
No 37
>PRK14098 glycogen synthase; Provisional
Probab=95.43 E-value=0.17 Score=51.43 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=59.7
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCC-CC---CceEEEEcCCChhhHHHHHhCC--
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVL-NW---KSFSIVVATLDIPLLKKILKGI-- 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw---~~~sv~v~~~~~~~l~~~L~~i-- 279 (336)
...+.++.|.+++.|.-..+...-..|||++||+||+...+= + .+.+ |+ ..-.+.++..+...+.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l--~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-I--VETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-C--ceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 456789999999999877777788999999999999865431 1 1111 21 3345667888877666655431
Q ss_pred ---CHHHHHHHHHHHHhhhccceecc
Q 019788 280 ---SSEEYLLLQSYVLKVRKHFQWHV 302 (336)
Q Consensus 280 ---~~~~~~~m~~~~~~~~~~f~y~~ 302 (336)
.++.+.+|+++. +.+.|.|+.
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~fsw~~ 474 (489)
T PRK14098 451 LYHDEERWEELVLEA--MERDFSWKN 474 (489)
T ss_pred HHcCHHHHHHHHHHH--hcCCCChHH
Confidence 355666665543 335555543
No 38
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.42 E-value=0.042 Score=52.72 Aligned_cols=88 Identities=26% Similarity=0.329 Sum_probs=64.9
Q ss_pred hhHHHHhccccEEEeecCCC-----------CCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHH
Q 019788 205 TPYADELLGSKFCLHVKGFE-----------VNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLK 273 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~-----------~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~ 273 (336)
++..+.++. .|+|++.+++ .....++++|++|+ |||+++.-.++ +.+.=....+.++ ++.++.
T Consensus 218 eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~-PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el~ 291 (333)
T PRK09814 218 EELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL-PVIVWSKAAIA--DFIVENGLGFVVD--SLEELP 291 (333)
T ss_pred HHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC-CEEECCCccHH--HHHHhCCceEEeC--CHHHHH
Confidence 355666665 9999887761 23446889999996 99998753322 3443355666666 667899
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhccc
Q 019788 274 KILKGISSEEYLLLQSYVLKVRKHF 298 (336)
Q Consensus 274 ~~L~~i~~~~~~~m~~~~~~~~~~f 298 (336)
+.|+.++++++.+|+++.+++.+.+
T Consensus 292 ~~l~~~~~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 292 EIIDNITEEEYQEMVENVKKISKLL 316 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988775
No 39
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.39 E-value=0.13 Score=49.24 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=64.1
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc-cccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SS 281 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 281 (336)
.+..+.++++..++.|.-.......+.|||++|| |||..+- ... .+.+.=.+-.+.++..+..++.+.|..+ .+
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~--~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP--SEIIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc--HHHcccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 3667788999999988755455678999999999 7777652 221 1223323455677777777666655554 46
Q ss_pred HHHHHHHHHHHhhhccceec
Q 019788 282 EEYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 282 ~~~~~m~~~~~~~~~~f~y~ 301 (336)
+.+.+|+++..+..+.|.|.
T Consensus 347 ~~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 347 KLLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 78888988887776666543
No 40
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.36 E-value=0.21 Score=49.60 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=74.9
Q ss_pred ceEEEEeccCC----chHHHHHHHHHhc--CCCceEecCCCc-hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEE
Q 019788 169 NKLAFFAGAVN----SPVREKLLQVWRN--DSEIYAHSGRLK-TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPV 241 (336)
Q Consensus 169 ~~l~~F~G~~~----~~~R~~l~~~~~~--~~~~~~~~g~~~-~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPV 241 (336)
+.-+.+.|+.. ...+..|.+.... -++.+...|..+ .+..+.|+.|..++.|.-......-+.|||++||.||
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvI 352 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPL 352 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEE
Confidence 45667777532 1223334333222 223344456544 4788999999999988655556788999999999766
Q ss_pred EEecccccCCCCCCC---CCceEEEEcCCChhhHHHHHhC---CCHHHHHHHHHHHHhhhccceecc
Q 019788 242 IIANHYDLPFADVLN---WKSFSIVVATLDIPLLKKILKG---ISSEEYLLLQSYVLKVRKHFQWHV 302 (336)
Q Consensus 242 ii~d~~~lPf~~~id---w~~~sv~v~~~~~~~l~~~L~~---i~~~~~~~m~~~~~~~~~~f~y~~ 302 (336)
.-..+ -|.++++. =.+-.+.+. +..++.+.+.. .+++....|+++.+++.++|.++.
T Consensus 353 a~~~g--gp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 415 (419)
T cd03806 353 AHASG--GPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEE 415 (419)
T ss_pred EEcCC--CCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHH
Confidence 54322 24455553 122233332 44444443332 255566667777777777775543
No 41
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.30 E-value=0.2 Score=50.45 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=58.6
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCC-CCC-----ceEEEEcCCChhhHHHHHhCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVL-NWK-----SFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~-----~~sv~v~~~~~~~l~~~L~~i 279 (336)
.....++.|.+++.|.=..+...-..|||++||+||+-..+ - ..+.+ |.. .-.+.++..+...+.+.|..+
T Consensus 349 ~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g-G--~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~ 425 (466)
T PRK00654 349 LAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG-G--LADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRA 425 (466)
T ss_pred HHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC-C--ccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 34577899999999977777778899999999988874322 1 12222 321 446778888877766655442
Q ss_pred -----CHHHHHHHHHHHHhhhccceec
Q 019788 280 -----SSEEYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 280 -----~~~~~~~m~~~~~~~~~~f~y~ 301 (336)
.++...+|.++.. ...|.|+
T Consensus 426 l~~~~~~~~~~~~~~~~~--~~~fsw~ 450 (466)
T PRK00654 426 LELYRQPPLWRALQRQAM--AQDFSWD 450 (466)
T ss_pred HHHhcCHHHHHHHHHHHh--ccCCChH
Confidence 3445666665543 3455444
No 42
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.91 E-value=0.23 Score=49.13 Aligned_cols=119 Identities=16% Similarity=0.247 Sum_probs=71.3
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcC--CCceEecCCC-chhHHHHhccccEEEeec----CCCCCcchHHHHHhcCcEEE
Q 019788 169 NKLAFFAGAVNSPVREKLLQVWRND--SEIYAHSGRL-KTPYADELLGSKFCLHVK----GFEVNTARIADSLYYGCVPV 241 (336)
Q Consensus 169 ~~l~~F~G~~~~~~R~~l~~~~~~~--~~~~~~~g~~-~~~y~~~l~~S~Fcl~p~----G~~~~s~rl~dal~~GcIPV 241 (336)
+..+.+.|. |..+..+.+..+.. ++.+...|.. ..++.+.|+.|..+++|. |.+ ...-++|||++|+ ||
T Consensus 269 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-PV 344 (415)
T cd03816 269 KLLCIITGK--GPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLD-LPMKVVDMFGCGL-PV 344 (415)
T ss_pred CEEEEEEec--CccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccC-CcHHHHHHHHcCC-CE
Confidence 366677774 44455555544322 2333344543 458889999999988642 222 3567999999998 99
Q ss_pred EEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--C---HHHHHHHHHHHHhhh
Q 019788 242 IIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--S---SEEYLLLQSYVLKVR 295 (336)
Q Consensus 242 ii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~---~~~~~~m~~~~~~~~ 295 (336)
|.++.-. ..+++.=..-.+.++ +..++.+.+..+ + +++..+|.++.++..
T Consensus 345 I~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 345 CALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred EEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9987432 223342222233343 555555544433 2 678888888777654
No 43
>PRK14099 glycogen synthase; Provisional
Probab=94.89 E-value=0.34 Score=49.21 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=60.6
Q ss_pred hHHHHh-ccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCC-CCCC--------ceEEEEcCCChhhHHHH
Q 019788 206 PYADEL-LGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADV-LNWK--------SFSIVVATLDIPLLKKI 275 (336)
Q Consensus 206 ~y~~~l-~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~-idw~--------~~sv~v~~~~~~~l~~~ 275 (336)
+....+ +.|.+.+.|.-..+...-..|||++||+||+-..+ -+ .++ +|.+ .-.+.++..+...|.+.
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~G-Gl--~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVG-GL--ADTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCC-Cc--cceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 455555 56888888877777788899999999999884321 11 122 2432 34677888888776666
Q ss_pred HhC----C-CHHHHHHHHHHHHhhhccceecc
Q 019788 276 LKG----I-SSEEYLLLQSYVLKVRKHFQWHV 302 (336)
Q Consensus 276 L~~----i-~~~~~~~m~~~~~~~~~~f~y~~ 302 (336)
|.. + +++...+|+++.. .+.|.|+.
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~ 467 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWRN 467 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChHH
Confidence 553 2 4667777877664 35566654
No 44
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=94.79 E-value=0.12 Score=48.85 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=59.4
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHHH
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SSEE 283 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~~ 283 (336)
+..+.|+.|.+.+.|......+.-++|||.+|| |||..+. -+..+.+.=.+-.+.++..+..++.+.|..+ +++.
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~ 333 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE 333 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 567889999999999876667788999999998 5666653 2333444333456677777776655555443 4556
Q ss_pred HHHHHHHHHhh
Q 019788 284 YLLLQSYVLKV 294 (336)
Q Consensus 284 ~~~m~~~~~~~ 294 (336)
..+|.++..+.
T Consensus 334 ~~~~~~~~~~~ 344 (365)
T cd03825 334 REELGEAAREL 344 (365)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 45
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.76 E-value=0.28 Score=46.29 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=56.0
Q ss_pred ecCCCc-hhHHHHhccccEEEeecCC-CCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCC-hhhHHHH
Q 019788 199 HSGRLK-TPYADELLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLD-IPLLKKI 275 (336)
Q Consensus 199 ~~g~~~-~~y~~~l~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~-~~~l~~~ 275 (336)
..|..+ .+..+.+.++..++.|.-. ......++|||++|| |||.++.- +..+++.-. ...++..+ +.+....
T Consensus 252 ~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~ 326 (363)
T cd04955 252 FVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLLEE 326 (363)
T ss_pred EccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHHHH
Confidence 344432 3667888888888887654 445667999999999 77777632 233444322 33344444 3332222
Q ss_pred HhCCCHHHHHHHHHHHHhh-hccceec
Q 019788 276 LKGISSEEYLLLQSYVLKV-RKHFQWH 301 (336)
Q Consensus 276 L~~i~~~~~~~m~~~~~~~-~~~f~y~ 301 (336)
|.+ .++...+|.++..+. ...|.|+
T Consensus 327 l~~-~~~~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 327 LEA-DPEEVSAMAKAARERIREKYTWE 352 (363)
T ss_pred HHh-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 222 345667777766653 3445444
No 46
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.55 E-value=0.31 Score=48.76 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=54.6
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCC-CCCC-----ceEEEEcCCChhhHHHHHhCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADV-LNWK-----SFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~-idw~-----~~sv~v~~~~~~~l~~~L~~i 279 (336)
...+.++.|.+.+.|.-..+...-..|||++||.||+-..+ ...+. .|.. .-.+.++..+..++.+.+..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 45678889999999977777778899999999988754322 11222 2332 146677777776665555442
Q ss_pred -----CHHHHHHHHHHHH
Q 019788 280 -----SSEEYLLLQSYVL 292 (336)
Q Consensus 280 -----~~~~~~~m~~~~~ 292 (336)
.++...+|.++..
T Consensus 440 l~~~~~~~~~~~~~~~~~ 457 (476)
T cd03791 440 LALYRDPEAWRKLQRNAM 457 (476)
T ss_pred HHHHcCHHHHHHHHHHHh
Confidence 2466666666543
No 47
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=94.47 E-value=0.33 Score=45.77 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=46.7
Q ss_pred chhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC
Q 019788 204 KTPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 204 ~~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 279 (336)
..+..+.+++|.++++|.-......-+.|||++|| |||.++.-.. .+.+.= ........++..++.+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~~~~--~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDTITK--EVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEEcCCch--hhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 34677889999999999766667888999999998 5566653221 222221 333444455556665555544
No 48
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.35 E-value=0.1 Score=39.93 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=44.5
Q ss_pred EEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEc-CCChhhHHHHHhCCCHHHHHHHHHHHHh-h
Q 019788 217 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVA-TLDIPLLKKILKGISSEEYLLLQSYVLK-V 294 (336)
Q Consensus 217 cl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~-~~~~~~l~~~L~~i~~~~~~~m~~~~~~-~ 294 (336)
||-|.-.+..+.|++|++++|+..|. .+.- .+.+.++..+-.+.+. .+++.+....|.+ .+++.++|.++..+ +
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~-~~~~--~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVIS-DDSP--GLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERV 77 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEE-CChH--HHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 34443334457899999999984443 3331 1222345555556665 2333333333322 67888888887764 4
Q ss_pred hccceec
Q 019788 295 RKHFQWH 301 (336)
Q Consensus 295 ~~~f~y~ 301 (336)
..++.|.
T Consensus 78 ~~~~t~~ 84 (92)
T PF13524_consen 78 LKRHTWE 84 (92)
T ss_pred HHhCCHH
Confidence 4455443
No 49
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.27 E-value=0.56 Score=43.70 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=48.2
Q ss_pred EecCCCc-hhHHHHhccccEEEeecC-CCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHH
Q 019788 198 AHSGRLK-TPYADELLGSKFCLHVKG-FEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKI 275 (336)
Q Consensus 198 ~~~g~~~-~~y~~~l~~S~Fcl~p~G-~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~ 275 (336)
...|..+ .+..+.++.+.+++.|.- .......++|||++|+ |||.+|.--. .++++=..-.+.++. ..++.+.
T Consensus 227 ~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~--~e~i~~~~~g~l~~~--~~~l~~~ 301 (335)
T cd03802 227 EYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAV--PEVVEDGVTGFLVDS--VEELAAA 301 (335)
T ss_pred EEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCc--hhheeCCCcEEEeCC--HHHHHHH
Confidence 3344433 356788999999999864 2344678999999997 9999885332 234432222333343 5566666
Q ss_pred HhCC
Q 019788 276 LKGI 279 (336)
Q Consensus 276 L~~i 279 (336)
|+.+
T Consensus 302 l~~l 305 (335)
T cd03802 302 VARA 305 (335)
T ss_pred HHHH
Confidence 6544
No 50
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=94.10 E-value=0.34 Score=47.33 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=55.2
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC---CH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI---SS 281 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i---~~ 281 (336)
.+..+.++.+..++.|.-.......+.|||++|| |||.++.-- ..+++.=. ..+.++. +..++.+.|..+ ..
T Consensus 261 ~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~~~-~~~~~~~-~~~~l~~~l~~~l~~~~ 335 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLPPD-MILLAEP-DVESIVRKLEEAISILR 335 (398)
T ss_pred HHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhheeCC-ceeecCC-CHHHHHHHHHHHHhChh
Confidence 4788899999999888654445678999999998 677766432 22344322 2333443 555444444332 22
Q ss_pred HHHHHHHHHHHhhhccceeccC
Q 019788 282 EEYLLLQSYVLKVRKHFQWHVF 303 (336)
Q Consensus 282 ~~~~~m~~~~~~~~~~f~y~~~ 303 (336)
++...+++...++.++|.|+..
T Consensus 336 ~~~~~~~~~~~~~~~~fs~~~~ 357 (398)
T cd03796 336 TGKHDPWSFHNRVKKMYSWEDV 357 (398)
T ss_pred hhhhHHHHHHHHHHhhCCHHHH
Confidence 2222334444557777766543
No 51
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.08 E-value=0.39 Score=48.43 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=61.4
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCC------CceEEEEcCCChhhHHHHHhCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNW------KSFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw------~~~sv~v~~~~~~~l~~~L~~i 279 (336)
+..+.|..+..++.|.-......-++|||++|| |||.+|.-- ..+.+.= ....+.++..+..++.+.+..+
T Consensus 363 ~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g~--~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~l 439 (475)
T cd03813 363 NVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVGS--CRELIEGADDEALGPAGEVVPPADPEALARAILRL 439 (475)
T ss_pred cHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCCC--hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHH
Confidence 566788889998888644445678999999999 888876321 1222211 2467788888887766666554
Q ss_pred --CHHHHHHHHHHHHh-hhcccee
Q 019788 280 --SSEEYLLLQSYVLK-VRKHFQW 300 (336)
Q Consensus 280 --~~~~~~~m~~~~~~-~~~~f~y 300 (336)
+++...+|.++.++ +.+.|.|
T Consensus 440 l~~~~~~~~~~~~a~~~v~~~~s~ 463 (475)
T cd03813 440 LKDPELRRAMGEAGRKRVERYYTL 463 (475)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCH
Confidence 56777888877765 4444433
No 52
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=94.07 E-value=0.52 Score=45.45 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=57.8
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCC-h-hhHHHHHhCCCHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLD-I-PLLKKILKGISSE 282 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~-~-~~l~~~L~~i~~~ 282 (336)
.+..+.++.+..++.|........-+.|||++| +|||.++.-.++ +.|.-....+.++..+ + ..|...|. +++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 466778889999988876555677899999999 599998743332 3332233333444322 1 22333333 466
Q ss_pred HHHHHHHHHHh-hhccceec
Q 019788 283 EYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 283 ~~~~m~~~~~~-~~~~f~y~ 301 (336)
...+|.++.++ +...|.|+
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~ 359 (372)
T cd03792 340 LRRKMGANAREHVRENFLIT 359 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHH
Confidence 77888887776 45666554
No 53
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=93.87 E-value=0.44 Score=45.83 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=48.3
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 279 (336)
.+.+.++.+..++.|........-+.|||++| +|||.++...- ..+++.=..-.+.++..+..++.+.+..+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHH
Confidence 45666778888888876555678899999999 58888872221 12334323445566788887776666654
No 54
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=93.85 E-value=0.08 Score=43.06 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=43.7
Q ss_pred eEecCCCchhHHHHhccccEEEeecC-CCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHH
Q 019788 197 YAHSGRLKTPYADELLGSKFCLHVKG-FEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKI 275 (336)
Q Consensus 197 ~~~~g~~~~~y~~~l~~S~Fcl~p~G-~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~ 275 (336)
+...|.. .++.+.++++..+++|.- +...+..++|++.+|| |||.++. ++.+.+.-....+.+ .++..++.+.
T Consensus 55 v~~~g~~-~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~ 128 (135)
T PF13692_consen 55 VRFHGFV-EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEELAEA 128 (135)
T ss_dssp EEEE-S--HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHH
T ss_pred EEEcCCH-HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHHHHH
Confidence 3444554 489999999999999864 2245789999999998 6666655 344444335566666 6676666665
Q ss_pred HhC
Q 019788 276 LKG 278 (336)
Q Consensus 276 L~~ 278 (336)
|..
T Consensus 129 i~~ 131 (135)
T PF13692_consen 129 IER 131 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 55
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.61 E-value=0.45 Score=46.53 Aligned_cols=139 Identities=19% Similarity=0.146 Sum_probs=85.4
Q ss_pred ccCCcccCCccccCccCCCC-C----CCCCC--CCCCCceEEEEeccC-CchHHHHHHHHHhcCCCceEecCCCc-----
Q 019788 138 FISGHIAHKDVSLPQIWPRQ-E----DPPKL--GSSKRNKLAFFAGAV-NSPVREKLLQVWRNDSEIYAHSGRLK----- 204 (336)
Q Consensus 138 ~~~~frp~~Dv~iP~~~~~~-~----~~~~~--~~~~R~~l~~F~G~~-~~~~R~~l~~~~~~~~~~~~~~g~~~----- 204 (336)
+..+||-+.|+-.|+-.-.. + ..+.. -..+++..+.+.... ...-|..+.+.+...-. +-+.|.|.
T Consensus 159 ~T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~l~-iD~YG~c~~~~~~ 237 (372)
T KOG2619|consen 159 WTMTYRRDSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIPRSARLDYYKELMKHLE-IDSYGECLRKNAN 237 (372)
T ss_pred ceEEEeccCCCCCccceEeecccCceecccccccccccceeeeeccccCcchHHHHHHHHHHhhCc-eeecccccccccc
Confidence 34567777888887532111 0 01111 134555666777664 34567766666654411 22334432
Q ss_pred ----hhHHHHhccccEEEeecCC---CCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcC-CChhhHHHHH
Q 019788 205 ----TPYADELLGSKFCLHVKGF---EVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVAT-LDIPLLKKIL 276 (336)
Q Consensus 205 ----~~y~~~l~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~-~~~~~l~~~L 276 (336)
....+.+.+-||-|.-... ..-+..|+.|+.+|.|||+++......| ++ .+.-|.|.. ..+.+|...|
T Consensus 238 ~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~yl 313 (372)
T KOG2619|consen 238 RDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAYL 313 (372)
T ss_pred CCCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHHH
Confidence 2567888899999986542 3458899999999999999998554333 33 444444443 4567899999
Q ss_pred hCCCH
Q 019788 277 KGISS 281 (336)
Q Consensus 277 ~~i~~ 281 (336)
+.+.+
T Consensus 314 k~L~~ 318 (372)
T KOG2619|consen 314 KKLDK 318 (372)
T ss_pred HHhhc
Confidence 98843
No 56
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.54 E-value=0.96 Score=42.38 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=63.7
Q ss_pred cCCCc-hhHHHHhccccEEEeecC--CCCCcchHHHHHhcCcEEEEEecccccCCCCCC-CCCceEEEEcCCChhhHHHH
Q 019788 200 SGRLK-TPYADELLGSKFCLHVKG--FEVNTARIADSLYYGCVPVIIANHYDLPFADVL-NWKSFSIVVATLDIPLLKKI 275 (336)
Q Consensus 200 ~g~~~-~~y~~~l~~S~Fcl~p~G--~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~~~sv~v~~~~~~~l~~~ 275 (336)
.|..+ .+..+.++.+..+++|.- .......+.|||.+|+ |||.++.-..+ +.+ +.....+.++..+..++.+.
T Consensus 249 ~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~ 325 (357)
T cd03795 249 LGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAEA 325 (357)
T ss_pred cCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHHH
Confidence 34433 367888999999998852 2233467999999986 77776632211 112 23456677777887776666
Q ss_pred HhCC--CHHHHHHHHHHHHhh-hcccee
Q 019788 276 LKGI--SSEEYLLLQSYVLKV-RKHFQW 300 (336)
Q Consensus 276 L~~i--~~~~~~~m~~~~~~~-~~~f~y 300 (336)
+..+ .+++..+|.++.++. .+.|.+
T Consensus 326 i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 353 (357)
T cd03795 326 IRRLLEDPELRERLGEAARERAEEEFTA 353 (357)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHhcch
Confidence 6654 577888888888764 455544
No 57
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=93.53 E-value=0.32 Score=47.55 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=58.7
Q ss_pred hHHHHhccccEEEeec--CCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--CH
Q 019788 206 PYADELLGSKFCLHVK--GFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI--SS 281 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~--G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 281 (336)
+....++.+..+++|. |.| ....+.|||++|| |||.++.- .+.+..=..-.+.++ .+..++.+.+..+ ++
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG-~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARG-IQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCC-cccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 5677888999998884 333 3457999999998 99988742 122211123345566 6666666555543 45
Q ss_pred HHHHHHHHHHHh-hhccceecc
Q 019788 282 EEYLLLQSYVLK-VRKHFQWHV 302 (336)
Q Consensus 282 ~~~~~m~~~~~~-~~~~f~y~~ 302 (336)
+...+|.++.++ +.+.|.|+.
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWPR 385 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 667888887765 456776653
No 58
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=93.52 E-value=1.6 Score=44.59 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=55.2
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc-cccCCCCCCCCCceEEEEcC----CC----hhhHHHHH
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDLPFADVLNWKSFSIVVAT----LD----IPLLKKIL 276 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lPf~~~idw~~~sv~v~~----~~----~~~l~~~L 276 (336)
+..+.++.+.-++.|.-......-+.|||++|| |||.+|- +-. .+.|.=..-.+.++. .+ +..+.+.+
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHH
Confidence 456777788877777644445677999999998 7777762 222 123322333344441 22 44444433
Q ss_pred hC-CCHHHHHHHHHHHHhhhcccee
Q 019788 277 KG-ISSEEYLLLQSYVLKVRKHFQW 300 (336)
Q Consensus 277 ~~-i~~~~~~~m~~~~~~~~~~f~y 300 (336)
.. +.++++.+|.++..+..+.|.|
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~fs~ 486 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGFLT 486 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhcCH
Confidence 22 2466788898888887777644
No 59
>PLN02949 transferase, transferring glycosyl groups
Probab=93.49 E-value=1.7 Score=43.98 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=60.1
Q ss_pred eEecCCCc-hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCC-CCC-ceEEEEcCCChhhHH
Q 019788 197 YAHSGRLK-TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVL-NWK-SFSIVVATLDIPLLK 273 (336)
Q Consensus 197 ~~~~g~~~-~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~-~~sv~v~~~~~~~l~ 273 (336)
+...|..+ .+..+.+++|.+++.|.-......-+.|||++||+||....+ =|-++++ ++. .-.-.+. .+..++.
T Consensus 337 V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~-~~~~~la 413 (463)
T PLN02949 337 VEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA-TTVEEYA 413 (463)
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC-CCHHHHH
Confidence 33345443 467788899998887765555567899999999877775432 1222222 111 1111112 2555555
Q ss_pred HHHhCC---CHHHHHHHHHHHHhhhccceec
Q 019788 274 KILKGI---SSEEYLLLQSYVLKVRKHFQWH 301 (336)
Q Consensus 274 ~~L~~i---~~~~~~~m~~~~~~~~~~f~y~ 301 (336)
+.+..+ ++++..+|+++.++...+|.++
T Consensus 414 ~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e 444 (463)
T PLN02949 414 DAILEVLRMRETERLEIAAAARKRANRFSEQ 444 (463)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCHH
Confidence 544442 5667778888887665666544
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=93.06 E-value=1.3 Score=43.73 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=54.7
Q ss_pred hHHHHhcccc--EEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcC-CChhhHHHHHhCC--C
Q 019788 206 PYADELLGSK--FCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVAT-LDIPLLKKILKGI--S 280 (336)
Q Consensus 206 ~y~~~l~~S~--Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~-~~~~~l~~~L~~i--~ 280 (336)
+..+.++.+. ..+.|.........+.|||++|+ |||.++---. .++++=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg~--~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGGT--PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCCc--HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 5556666533 33334433335677999999996 9998873322 244433333445554 4666666655554 5
Q ss_pred HHHHHHHHHHHHhh-hcccee
Q 019788 281 SEEYLLLQSYVLKV-RKHFQW 300 (336)
Q Consensus 281 ~~~~~~m~~~~~~~-~~~f~y 300 (336)
++...+|+++.++. .++|-+
T Consensus 378 ~~~~~~m~~~ar~~~~~~f~~ 398 (407)
T cd04946 378 EEEYQTMREKAREKWEENFNA 398 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCH
Confidence 77888898887764 345433
No 61
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=92.53 E-value=0.29 Score=48.76 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=59.4
Q ss_pred hHHHHhccc----cEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--
Q 019788 206 PYADELLGS----KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI-- 279 (336)
Q Consensus 206 ~y~~~l~~S----~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i-- 279 (336)
+..+.++.+ ..++.|.-......-+.|||++|| |||.++.-- ..++++=.+-.+.++..+...+.+.+..+
T Consensus 329 ~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~gg--~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 329 DVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDGG--PRDIIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCCC--cHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 334445544 444555434445667999999999 999998422 33444334556778888887766665543
Q ss_pred CHHHHHHHHHHHHh-hhccceecc
Q 019788 280 SSEEYLLLQSYVLK-VRKHFQWHV 302 (336)
Q Consensus 280 ~~~~~~~m~~~~~~-~~~~f~y~~ 302 (336)
+++...+|.++.++ +.++|.|+.
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~~ 429 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWDA 429 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 45666777776654 566776653
No 62
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.46 E-value=1.8 Score=44.78 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=45.1
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLL 272 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l 272 (336)
.+..+.|+.+..++.|.-......-+.|||++|| |||.++.--.| +.|.=..-.+.++..+...+
T Consensus 464 ~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~~--EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 464 RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGSA--ECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCcH--HHcccCCcEEEECCCChhhH
Confidence 3667788999998888655666788999999999 99988743222 33433445566777665443
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=91.06 E-value=0.5 Score=45.75 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=34.4
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 246 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 246 (336)
.+..+.++.|.+.+.|.-......-+.|||++|| |||.++-
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 4667889999999988766666788999999999 9998864
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=90.54 E-value=0.74 Score=44.37 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=32.1
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 246 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 246 (336)
.+..+.++.+..++.|.-......-+.|||++|| |||.++.
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~ 241 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEK 241 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCC
Confidence 3677889999999988655545667999999998 7777763
No 65
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=89.45 E-value=6.3 Score=37.89 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=65.0
Q ss_pred EEEeccCCchHHHHHHHHHhcCCCceEecCCCc-hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEeccc-cc
Q 019788 172 AFFAGAVNSPVREKLLQVWRNDSEIYAHSGRLK-TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY-DL 249 (336)
Q Consensus 172 ~~F~G~~~~~~R~~l~~~~~~~~~~~~~~g~~~-~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~-~l 249 (336)
+.+.|..+..++..+.+.+...+. +...|..+ .++...|+.+.+++.+.|. -+.||+.+|| |||..... ..
T Consensus 233 ~vi~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~~~~~ 305 (365)
T TIGR00236 233 IVYPVHLNPVVREPLHKHLGDSKR-VHLIEPLEYLDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRDTTER 305 (365)
T ss_pred EEEECCCChHHHHHHHHHhCCCCC-EEEECCCChHHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCCCCCC
Confidence 444443333455544444432222 33334332 3788899999998877642 2799999997 88875321 22
Q ss_pred CCCCCCCCCceEEEEcCCChhhHHHHHhCC--CHHHHHHHHHHHHhhhccceeccCCCCccHHHHHHHHH
Q 019788 250 PFADVLNWKSFSIVVATLDIPLLKKILKGI--SSEEYLLLQSYVLKVRKHFQWHVFPSDYDAFYMVMYEL 317 (336)
Q Consensus 250 Pf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~~f~y~~~~~~~daf~~~~~~l 317 (336)
| +.+. ....+.++ .+..+|.+.++.+ +++...+|.++ . .+.+.+.|...++..|
T Consensus 306 ~--e~~~-~g~~~lv~-~d~~~i~~ai~~ll~~~~~~~~~~~~----~------~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 306 P--ETVE-AGTNKLVG-TDKENITKAAKRLLTDPDEYKKMSNA----S------NPYGDGEASERIVEEL 361 (365)
T ss_pred h--HHHh-cCceEEeC-CCHHHHHHHHHHHHhChHHHHHhhhc----C------CCCcCchHHHHHHHHH
Confidence 2 3333 33444554 4555555544433 23333344331 1 2224567777777444
No 66
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=89.37 E-value=1.5 Score=42.50 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=57.9
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc-----cccCCCCCCCCCceEEEEcCCChhhHHHHHhCC
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-----YDLPFADVLNWKSFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-----~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 279 (336)
++..+.+.++.+.+.-.=+........|+|++|.|||.=..+ ++.|++. +-.=++.+++..-...+|+-+
T Consensus 348 ~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G-----~~tGFla~t~~EYaE~iLkIv 422 (465)
T KOG1387|consen 348 EKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDG-----ETTGFLAPTDEEYAEAILKIV 422 (465)
T ss_pred HHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCC-----ccceeecCChHHHHHHHHHHH
Confidence 377889999999987666666678899999999999986542 3444432 112233344444344444432
Q ss_pred --CHHHHHHHHHHHHhhhccc
Q 019788 280 --SSEEYLLLQSYVLKVRKHF 298 (336)
Q Consensus 280 --~~~~~~~m~~~~~~~~~~f 298 (336)
+.++...||++.++--.+|
T Consensus 423 ~~~~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 423 KLNYDERNMMRRNARKSLARF 443 (465)
T ss_pred HcCHHHHHHHHHHHHHHHHHh
Confidence 5666888888877655554
No 67
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=89.32 E-value=5.4 Score=38.83 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=49.9
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCC------CCCCceEEEEcCCChhhHHHHHhCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADV------LNWKSFSIVVATLDIPLLKKILKGI 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~------idw~~~sv~v~~~~~~~l~~~L~~i 279 (336)
+..+.|+.|...+.+.|. .-+.|||.+|+ |||+.+. .|-++. ++ ....+.+ .+...|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 678889999998887662 24899999997 8888763 233322 22 3344433 4555555544433
Q ss_pred --C-HHHHHHHHHHHHhh
Q 019788 280 --S-SEEYLLLQSYVLKV 294 (336)
Q Consensus 280 --~-~~~~~~m~~~~~~~ 294 (336)
+ ++..++|+++.++.
T Consensus 345 l~~~~~~~~~m~~~~~~~ 362 (382)
T PLN02605 345 FGDKSDELEAMSENALKL 362 (382)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 2 66777887776554
No 68
>PLN02939 transferase, transferring glycosyl groups
Probab=89.04 E-value=2.8 Score=45.96 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=58.9
Q ss_pred HHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCC--------ceEEEEcCCChhhHHHHHhC-
Q 019788 208 ADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWK--------SFSIVVATLDIPLLKKILKG- 278 (336)
Q Consensus 208 ~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~--------~~sv~v~~~~~~~l~~~L~~- 278 (336)
...++.|.++++|.=..+...-..|||++||+||+...+= ++ +-+.|++ .-.+.++..+...+...|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 3578999999999877778888999999999999764321 11 1112332 23556677777665544432
Q ss_pred ---C--CHHHHHHHHHHHHhhhccceecc
Q 019788 279 ---I--SSEEYLLLQSYVLKVRKHFQWHV 302 (336)
Q Consensus 279 ---i--~~~~~~~m~~~~~~~~~~f~y~~ 302 (336)
+ +++...+|+++. +...|.|..
T Consensus 929 L~~~~~dpe~~~~L~~~a--m~~dFSWe~ 955 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQKD--MNIDFSWDS 955 (977)
T ss_pred HHHhccCHHHHHHHHHHH--HHhcCCHHH
Confidence 2 467777787653 345666654
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=88.85 E-value=2.6 Score=46.63 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=62.2
Q ss_pred hHHHHhccc----cEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC--
Q 019788 206 PYADELLGS----KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI-- 279 (336)
Q Consensus 206 ~y~~~l~~S----~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i-- 279 (336)
+..+.++.+ ..++.|.-..+...-+.|||++|+ |||.++.- ...++|.-..-.+.|+..+...|.+.|..+
T Consensus 560 dvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~ 636 (1050)
T TIGR02468 560 DVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVA 636 (1050)
T ss_pred HHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhh
Confidence 334455544 355556544455677999999996 99998742 233444444557788888887777666554
Q ss_pred CHHHHHHHHHHHHhhhccceecc
Q 019788 280 SSEEYLLLQSYVLKVRKHFQWHV 302 (336)
Q Consensus 280 ~~~~~~~m~~~~~~~~~~f~y~~ 302 (336)
+++...+|.++..+..+.|.|..
T Consensus 637 Dpelr~~m~~~gr~~v~~FSWe~ 659 (1050)
T TIGR02468 637 DKQLWAECRQNGLKNIHLFSWPE 659 (1050)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHH
Confidence 46677889888877666676664
No 70
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=87.64 E-value=5.1 Score=38.72 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=47.2
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCC-----CCCCCceEEEEcCCChhhHHHHHhCC-
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-----VLNWKSFSIVVATLDIPLLKKILKGI- 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-----~idw~~~sv~v~~~~~~~l~~~L~~i- 279 (336)
+..+.|+.|...++..| ..-+.||+.+|+ |||+.+.. |-++ .+.-..+.+.+ .+..++.+.++.+
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~--~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll 336 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPV--PGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALL 336 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCC--CCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHH
Confidence 46688888987665333 345899999997 68876532 1111 11112344432 4555555554443
Q ss_pred -CHHHHHHHHHHHHhhh
Q 019788 280 -SSEEYLLLQSYVLKVR 295 (336)
Q Consensus 280 -~~~~~~~m~~~~~~~~ 295 (336)
+++...+|.++..++.
T Consensus 337 ~~~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 337 QDDMKLLQMKEAMKSLY 353 (380)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 4677788888776543
No 71
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.51 E-value=1.2 Score=46.02 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=63.1
Q ss_pred chhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccC-C-CCCC-CCCceEEEEcC-------CChhhHH
Q 019788 204 KTPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP-F-ADVL-NWKSFSIVVAT-------LDIPLLK 273 (336)
Q Consensus 204 ~~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lP-f-~~~i-dw~~~sv~v~~-------~~~~~l~ 273 (336)
+..|.+.++.+.-++.|.-..++..-..||+++|+ |||.++.--++ + .+++ +-.+..+.|.. +.+.+|.
T Consensus 465 g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~-PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 465 GLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGI-PSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred CcchHHHhhhceEEEeccccCCCCcHHHHHHHcCC-CEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 34799999999999999877777888999999995 99999864432 0 1222 33345666652 2234454
Q ss_pred HHHhCC---CHHHHHHHHHHHHhhhccceeccC
Q 019788 274 KILKGI---SSEEYLLLQSYVLKVRKHFQWHVF 303 (336)
Q Consensus 274 ~~L~~i---~~~~~~~m~~~~~~~~~~f~y~~~ 303 (336)
+.|..+ +..+....|....++...|.|+.-
T Consensus 544 ~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~ 576 (590)
T cd03793 544 QYMYEFCQLSRRQRIIQRNRTERLSDLLDWRNL 576 (590)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHH
Confidence 444443 333333333333377888888764
No 72
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=87.35 E-value=0.88 Score=35.97 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=25.3
Q ss_pred CCCCCcchHHHHHHHHHhcCC-cccCCcCCccEEEE
Q 019788 27 FEPRGNYASESYFKKAFMKSH-FVTKDPSKADLFFL 61 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~-~rT~dP~eAdlF~v 61 (336)
+|..++|.+|.+.- .|.+.+ -.|++|++||+++|
T Consensus 8 GC~~N~~Dse~i~~-~l~~~G~~~~~~~e~AD~iii 42 (98)
T PF00919_consen 8 GCQMNQYDSERIAS-ILQAAGYEIVDDPEEADVIII 42 (98)
T ss_pred CCcccHHHHHHHHH-HHHhcCCeeecccccCCEEEE
Confidence 36777788776544 455555 47999999999997
No 73
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=86.89 E-value=5 Score=39.34 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=52.1
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCC-----CCceEEEEcCCChhhHHHHHhCC-
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLN-----WKSFSIVVATLDIPLLKKILKGI- 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~id-----w~~~sv~v~~~~~~~l~~~L~~i- 279 (336)
+..+.|+.|..++..+|. .-+.||+.+|+ |||+.+.. |-++..+ =..+++.+. +..++.+.|..+
T Consensus 266 ~~~~~~~~aDl~I~k~gg----~tl~EA~a~G~-PvI~~~~~--pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~ll 336 (391)
T PRK13608 266 HMNEWMASSQLMITKPGG----ITISEGLARCI-PMIFLNPA--PGQELENALYFEEKGFGKIAD--TPEEAIKIVASLT 336 (391)
T ss_pred hHHHHHHhhhEEEeCCch----HHHHHHHHhCC-CEEECCCC--CCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHHh
Confidence 677889999999885442 34899999996 89987642 3332211 123444332 444444444433
Q ss_pred -CHHHHHHHHHHHHhhhcc
Q 019788 280 -SSEEYLLLQSYVLKVRKH 297 (336)
Q Consensus 280 -~~~~~~~m~~~~~~~~~~ 297 (336)
+++.+.+|+++..+..+.
T Consensus 337 ~~~~~~~~m~~~~~~~~~~ 355 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKIK 355 (391)
T ss_pred cCHHHHHHHHHHHHHhcCC
Confidence 567888999888776543
No 74
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=85.50 E-value=1.9 Score=40.83 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=51.6
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCC-----CCCCCCceEEEEcCCC--hhhHHHHHhC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFA-----DVLNWKSFSIVVATLD--IPLLKKILKG 278 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~-----~~idw~~~sv~v~~~~--~~~l~~~L~~ 278 (336)
++.+.|..|..++.+.| ..-++|||.+|+ |||+.+.-.-+-+ +.+.-....+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 67889999999998766 246999999996 8877531100000 1233345556666654 5555555544
Q ss_pred C--CHHHHHHHHHHHHh
Q 019788 279 I--SSEEYLLLQSYVLK 293 (336)
Q Consensus 279 i--~~~~~~~m~~~~~~ 293 (336)
+ +++...+|.++.++
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 3 46667777776644
No 75
>PLN02316 synthase/transferase
Probab=84.90 E-value=11 Score=42.02 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=56.6
Q ss_pred HHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCC------------ceEEEEcCCChhhHHHHH
Q 019788 209 DELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWK------------SFSIVVATLDIPLLKKIL 276 (336)
Q Consensus 209 ~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~------------~~sv~v~~~~~~~l~~~L 276 (336)
..++.|.+.|+|.=..+...-..|||++||+||+-..+ -+| +-+.|++ .-.+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 57899999999987888889999999999999996543 111 1112331 345677777776544433
Q ss_pred hC-CC--HHHHHHHHHHHHh-hhccceeccC
Q 019788 277 KG-IS--SEEYLLLQSYVLK-VRKHFQWHVF 303 (336)
Q Consensus 277 ~~-i~--~~~~~~m~~~~~~-~~~~f~y~~~ 303 (336)
.. +. .+....|++..++ +.+.|.|+..
T Consensus 993 ~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~ 1023 (1036)
T PLN02316 993 NRAISAWYDGRDWFNSLCKRVMEQDWSWNRP 1023 (1036)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhCCHHHH
Confidence 32 11 1222333433333 3566766643
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=84.37 E-value=5.3 Score=39.35 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred hHHHHhccccEEEeecCC-CCCcchHHHHHhcCcEEEEEecccccCCCCC---CCCCceEEEEcCCChhhHHHHHhCC--
Q 019788 206 PYADELLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADV---LNWKSFSIVVATLDIPLLKKILKGI-- 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~---idw~~~sv~v~~~~~~~l~~~L~~i-- 279 (336)
+..+.++.|..|+++... .....-+.||+++|| |||.++... -+.+. +.-..+.+ +..+..+|.+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 567788889887775332 113345899999997 888875421 01111 11123333 344555555555443
Q ss_pred CHHHHHHHHHHHHhhhc
Q 019788 280 SSEEYLLLQSYVLKVRK 296 (336)
Q Consensus 280 ~~~~~~~m~~~~~~~~~ 296 (336)
+++...+|.++.++...
T Consensus 388 ~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 388 DPDARQAYGEAGVAFLK 404 (425)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 46677788877766543
No 77
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=83.39 E-value=1.7 Score=42.10 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=42.1
Q ss_pred hhHHHHhccccEEEeecCCC-----CCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhC
Q 019788 205 TPYADELLGSKFCLHVKGFE-----VNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKG 278 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~-----~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 278 (336)
.+..+.++.+..|+.|--.. .....++|+|++|+ |||.++ +.+......-.+.+ ..+..++.+.++.
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 47888899999999985322 23467999999997 888654 22333333323333 4456555555544
No 78
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=81.13 E-value=10 Score=32.35 Aligned_cols=76 Identities=18% Similarity=0.068 Sum_probs=45.7
Q ss_pred ceEEEEeccCCch-HHHHHHHHHhcCCCceEecCCC--chhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEec
Q 019788 169 NKLAFFAGAVNSP-VREKLLQVWRNDSEIYAHSGRL--KTPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 245 (336)
Q Consensus 169 ~~l~~F~G~~~~~-~R~~l~~~~~~~~~~~~~~g~~--~~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d 245 (336)
+.-+.+.|..... ..+.+....... ..+...|.. ...+...++.|..+++|......+..++|||.+|| |||.++
T Consensus 135 ~~~~~i~G~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~ 212 (229)
T cd01635 135 DLKLVIAGDGPEREYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATD 212 (229)
T ss_pred CeEEEEEeCCCChHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcC
Confidence 4667777764332 222211222222 223334442 33555666669999999887788899999999987 555555
Q ss_pred c
Q 019788 246 H 246 (336)
Q Consensus 246 ~ 246 (336)
.
T Consensus 213 ~ 213 (229)
T cd01635 213 V 213 (229)
T ss_pred C
Confidence 3
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=80.71 E-value=12 Score=39.99 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=53.2
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCCh------hhHHHHHhCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDI------PLLKKILKGI 279 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~------~~l~~~L~~i 279 (336)
+....|..+...+.|.-......-+.|||.+|| |||.++.-- ..++|.=..-.+.++..+. ..|.+.|...
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 566778888887777545556788999999996 888877422 2233433444556675553 2344444433
Q ss_pred CHHHHHHHHHHHHh-hhccceec
Q 019788 280 SSEEYLLLQSYVLK-VRKHFQWH 301 (336)
Q Consensus 280 ~~~~~~~m~~~~~~-~~~~f~y~ 301 (336)
.. -.+|+++.++ +.+.|.|+
T Consensus 661 ~~--~~~l~~~ar~~a~~~FS~~ 681 (694)
T PRK15179 661 AA--DPGIARKAADWASARFSLN 681 (694)
T ss_pred hc--cHHHHHHHHHHHHHhCCHH
Confidence 21 1344555543 44565444
No 80
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=77.70 E-value=20 Score=33.28 Aligned_cols=131 Identities=13% Similarity=0.160 Sum_probs=82.3
Q ss_pred CCCCCCceEEEEeccCCch-HHHHHHHHHhcCCCce---Ee--c--CCCc---------hhHHHHhccccEEEeecCCCC
Q 019788 163 LGSSKRNKLAFFAGAVNSP-VREKLLQVWRNDSEIY---AH--S--GRLK---------TPYADELLGSKFCLHVKGFEV 225 (336)
Q Consensus 163 ~~~~~R~~l~~F~G~~~~~-~R~~l~~~~~~~~~~~---~~--~--g~~~---------~~y~~~l~~S~Fcl~p~G~~~ 225 (336)
.+-..|.-.++|+|+.+++ .|+.|++...+.++.+ +. . +.|+ ..-.+...+-||=|...|.+
T Consensus 78 ~pW~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~- 156 (256)
T smart00672 78 TKWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVA- 156 (256)
T ss_pred CCccccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCcc-
Confidence 3556788889999998776 8999998876654321 11 1 1111 12345556789999999987
Q ss_pred CcchHHHHHhcCcEEEEEecccccCCCC-CCCCCceEEEEcC--CC--hhhHHHHHhCCCHHHHHHHHHHHHhhhc
Q 019788 226 NTARIADSLYYGCVPVIIANHYDLPFAD-VLNWKSFSIVVAT--LD--IPLLKKILKGISSEEYLLLQSYVLKVRK 296 (336)
Q Consensus 226 ~s~rl~dal~~GcIPVii~d~~~lPf~~-~idw~~~sv~v~~--~~--~~~l~~~L~~i~~~~~~~m~~~~~~~~~ 296 (336)
.|.||.--|.+|++++.....+..=|.+ +.+|.-+. -|.. ++ +.+..+.+++ .+++.+++-++..+..+
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~~~ 230 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNE-HDKKAQEIGKRGSEFIQ 230 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 5789999999999999888654322332 24565553 2222 23 6666666665 34555555555555433
No 81
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=76.89 E-value=12 Score=35.55 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=51.6
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc-cccC-----CCCCCCCCceEEEEcCCC--hhhHHHHHh
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDLP-----FADVLNWKSFSIVVATLD--IPLLKKILK 277 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lP-----f~~~idw~~~sv~v~~~~--~~~l~~~L~ 277 (336)
++.+.|..|..+++..| ..-++|||++|+ |||+... .... ..+.+--....+.++.++ ...|.+.++
T Consensus 245 ~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~ 319 (357)
T PRK00726 245 DMAAAYAAADLVICRAG----ASTVAELAAAGL-PAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLL 319 (357)
T ss_pred hHHHHHHhCCEEEECCC----HHHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHH
Confidence 67788999999998766 245999999997 5555431 1110 011222234567777766 556666555
Q ss_pred CC--CHHHHHHHHHHHHhh
Q 019788 278 GI--SSEEYLLLQSYVLKV 294 (336)
Q Consensus 278 ~i--~~~~~~~m~~~~~~~ 294 (336)
.+ +++...+|+++.++.
T Consensus 320 ~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 320 ELLSDPERLEAMAEAARAL 338 (357)
T ss_pred HHHcCHHHHHHHHHHHHhc
Confidence 43 356667787765444
No 82
>PLN02275 transferase, transferring glycosyl groups
Probab=76.64 E-value=11 Score=36.54 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=48.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcC--CCceEecCCC-chhHHHHhccccEEEeecCC---CCCcchHHHHHhcCcEEEE
Q 019788 169 NKLAFFAGAVNSPVREKLLQVWRND--SEIYAHSGRL-KTPYADELLGSKFCLHVKGF---EVNTARIADSLYYGCVPVI 242 (336)
Q Consensus 169 ~~l~~F~G~~~~~~R~~l~~~~~~~--~~~~~~~g~~-~~~y~~~l~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVi 242 (336)
++-+.+.|. |+.|..|.+..... +++....|.. ..++.+.|+.+..++.|... ......++|||++|+ |||
T Consensus 261 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~-PVV 337 (371)
T PLN02275 261 RLLFIITGK--GPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVC 337 (371)
T ss_pred CeEEEEEeC--CCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC-CEE
Confidence 467888884 56666665554422 3333333433 45888999999999875321 113567999999997 888
Q ss_pred Eec
Q 019788 243 IAN 245 (336)
Q Consensus 243 i~d 245 (336)
.++
T Consensus 338 a~~ 340 (371)
T PLN02275 338 AVS 340 (371)
T ss_pred Eec
Confidence 876
No 83
>PLN00142 sucrose synthase
Probab=75.82 E-value=7.6 Score=42.01 Aligned_cols=92 Identities=5% Similarity=0.099 Sum_probs=58.3
Q ss_pred HHhcc-ccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHh----C--CCH
Q 019788 209 DELLG-SKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILK----G--ISS 281 (336)
Q Consensus 209 ~~l~~-S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~----~--i~~ 281 (336)
..+++ +..+++|.-..+...-+.|||++|+ |||.++.--++ ++|.=..-.+.|+..+...+.+.|. . -++
T Consensus 661 r~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~~--EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 661 RYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGPA--EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred HHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCHH--HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCH
Confidence 33443 3445567555556678999999997 78777642222 3343345567788888766555443 2 257
Q ss_pred HHHHHHHHHHH-hhhccceeccC
Q 019788 282 EEYLLLQSYVL-KVRKHFQWHVF 303 (336)
Q Consensus 282 ~~~~~m~~~~~-~~~~~f~y~~~ 303 (336)
+...+|.++.+ ++.++|.|+..
T Consensus 738 ~lr~~mg~~Ar~rv~e~FSWe~~ 760 (815)
T PLN00142 738 SYWNKISDAGLQRIYECYTWKIY 760 (815)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHH
Confidence 77788887764 56788888754
No 84
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=75.06 E-value=12 Score=35.30 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=52.4
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEeccc-------ccCCCCCCCCCceEEEEcCC--ChhhHHHH
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY-------DLPFADVLNWKSFSIVVATL--DIPLLKKI 275 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~-------~lPf~~~idw~~~sv~v~~~--~~~~l~~~ 275 (336)
.++.+.|..+...+++.|. .-+.|||.+|+ |||+.+.- ..+.+. +......+.++.. +..+|.+.
T Consensus 244 ~~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~-l~~~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 244 DDMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANARA-LVKAGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hhHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHH-HHhCCCEEEEecCCCCHHHHHHH
Confidence 3677889999999887662 34899999997 66654311 111111 2224556677765 66666666
Q ss_pred HhCC--CHHHHHHHHHHHHhh
Q 019788 276 LKGI--SSEEYLLLQSYVLKV 294 (336)
Q Consensus 276 L~~i--~~~~~~~m~~~~~~~ 294 (336)
|+.+ +++...+|+++.++.
T Consensus 318 i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 318 LLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred HHHHhcCHHHHHHHHHHHHhc
Confidence 5544 466777777766543
No 85
>PRK10125 putative glycosyl transferase; Provisional
Probab=74.97 E-value=10 Score=37.44 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=48.7
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHH
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKI 275 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~ 275 (336)
+..+.++.+...+.|.-......-+.|||++|| |||.+|-=-.| ++++= .-.+.++..|...|.+.
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~~--Eiv~~-~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAAR--EVLQK-SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCChH--HhEeC-CcEEEECCCCHHHHHhc
Confidence 567888889988888766667788999999996 89888743322 34432 24778899898877763
No 86
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=70.67 E-value=13 Score=34.81 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=27.0
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEE
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVII 243 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii 243 (336)
+..+.|+.|..+++..|.+ ++|++.+| +|+|+
T Consensus 234 ~m~~lm~~aDl~Is~~G~T-----~~E~~a~g-~P~i~ 265 (279)
T TIGR03590 234 NMAELMNEADLAIGAAGST-----SWERCCLG-LPSLA 265 (279)
T ss_pred HHHHHHHHCCEEEECCchH-----HHHHHHcC-CCEEE
Confidence 6789999999999987732 99999999 67765
No 87
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.15 E-value=39 Score=30.07 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=32.4
Q ss_pred cCCCc-hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc
Q 019788 200 SGRLK-TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 246 (336)
Q Consensus 200 ~g~~~-~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 246 (336)
.|..+ ....+.++.+...+.|.-......-+.||+++| +|||.++.
T Consensus 262 ~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~ 308 (381)
T COG0438 262 LGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDV 308 (381)
T ss_pred ecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCC
Confidence 45444 466667887999998843322233499999999 99988764
No 88
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=68.92 E-value=7.9 Score=38.98 Aligned_cols=89 Identities=10% Similarity=-0.020 Sum_probs=58.7
Q ss_pred chhHHHHhccccEEEeecCCCCCcchHHHHHhcCcE---EEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhC--
Q 019788 204 KTPYADELLGSKFCLHVKGFEVNTARIADSLYYGCV---PVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKG-- 278 (336)
Q Consensus 204 ~~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcI---PVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-- 278 (336)
..+..+.++.|.-++.|.-......-..|||++||= |||+++.--.+-. ..-.+.|+..+...+.+.|..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHH
Confidence 357888899999988876444445668899999995 5898874322111 233678888888776665543
Q ss_pred -CCHHHHHHHHHHHHhhhcc
Q 019788 279 -ISSEEYLLLQSYVLKVRKH 297 (336)
Q Consensus 279 -i~~~~~~~m~~~~~~~~~~ 297 (336)
.++++..+|.++.++....
T Consensus 426 ~~~~~e~~~~~~~~~~~v~~ 445 (460)
T cd03788 426 TMPLEERRERHRKLREYVRT 445 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 3566666666665554433
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=64.87 E-value=18 Score=39.06 Aligned_cols=87 Identities=6% Similarity=0.147 Sum_probs=57.7
Q ss_pred cEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCC------CHHHHHHHH
Q 019788 215 KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGI------SSEEYLLLQ 288 (336)
Q Consensus 215 ~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i------~~~~~~~m~ 288 (336)
..+++|.=..+...-+.|||++|+ |||.++.=-+ .++|.=..-.+.|+..+...+.+.|..+ +++...+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456677666677788999999998 5565553211 1223334556778888877666555432 577788888
Q ss_pred HHHH-hhhccceeccCC
Q 019788 289 SYVL-KVRKHFQWHVFP 304 (336)
Q Consensus 289 ~~~~-~~~~~f~y~~~~ 304 (336)
++.+ ++.++|.|....
T Consensus 722 ~~a~~rV~~~FSW~~~A 738 (784)
T TIGR02470 722 QGGLQRIYEKYTWKIYS 738 (784)
T ss_pred HHHHHHHHHhCCHHHHH
Confidence 8755 577888887653
No 90
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=62.43 E-value=38 Score=33.56 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCCCCCceEEEEeccCCch-HHHHHHHHHhcCCCce---Eec---C-----CCchhHHHHhccccEEEeecCCCCCcchH
Q 019788 163 LGSSKRNKLAFFAGAVNSP-VREKLLQVWRNDSEIY---AHS---G-----RLKTPYADELLGSKFCLHVKGFEVNTARI 230 (336)
Q Consensus 163 ~~~~~R~~l~~F~G~~~~~-~R~~l~~~~~~~~~~~---~~~---g-----~~~~~y~~~l~~S~Fcl~p~G~~~~s~rl 230 (336)
.+-.+|.-.++|+|+.... .|..|++.-.+.+... +.. + .....-.+...+-+|-+...|.+ +|.||
T Consensus 152 ~pW~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~-~S~Rl 230 (395)
T PF05686_consen 152 VPWEDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNA-WSGRL 230 (395)
T ss_pred CChhhcccceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCce-eehhH
Confidence 3456788889999996544 5998887654433211 110 0 01112345566788889999987 47899
Q ss_pred HHHHhcCcEEEEEecccccCCCC-CCCCCceEEEEcC-CChhhHHHHHhCC--CHHHHHHHHHHHHhh
Q 019788 231 ADSLYYGCVPVIIANHYDLPFAD-VLNWKSFSIVVAT-LDIPLLKKILKGI--SSEEYLLLQSYVLKV 294 (336)
Q Consensus 231 ~dal~~GcIPVii~d~~~lPf~~-~idw~~~sv~v~~-~~~~~l~~~L~~i--~~~~~~~m~~~~~~~ 294 (336)
.--|++|++.+.....+..=|.+ +.+|.-+.- |.. ++..+|.+.++=. .+++.+++-++..+.
T Consensus 231 kylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVP-V~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f 297 (395)
T PF05686_consen 231 KYLLACNSVVLKVKSPYYEFFYRALKPWVHYVP-VKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRF 297 (395)
T ss_pred HHHHcCCceEEEeCCcHHHHHHhhhcccccEEE-eccccchhhHHHHhhhcccChHHHHHHHHHHHHH
Confidence 99999999988886654322222 346666642 333 3444555544322 244555555554443
No 91
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=59.95 E-value=28 Score=35.15 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=54.5
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEE----EEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhC--
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVP----VIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKG-- 278 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIP----Vii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-- 278 (336)
.+....++.+.-|++|.-......-..|||++|+ | ||+++.--.+ +.+. -++.|++.+...+.+.|..
T Consensus 347 ~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~aL 420 (456)
T TIGR02400 347 EELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARAL 420 (456)
T ss_pred HHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHHH
Confidence 4788889999999987643334567999999996 8 8888743211 1122 3678888888776665543
Q ss_pred -CCHHHHHHHHHHHHh
Q 019788 279 -ISSEEYLLLQSYVLK 293 (336)
Q Consensus 279 -i~~~~~~~m~~~~~~ 293 (336)
.+.++..++.+++++
T Consensus 421 ~~~~~er~~r~~~~~~ 436 (456)
T TIGR02400 421 TMPLEEREERHRAMMD 436 (456)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 355555554444443
No 92
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=54.44 E-value=21 Score=34.31 Aligned_cols=85 Identities=9% Similarity=0.103 Sum_probs=47.1
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCCC----CCCCce------------E--EEEcCC
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADV----LNWKSF------------S--IVVATL 267 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~----idw~~~------------s--v~v~~~ 267 (336)
+..+.++.|..++++.|. -..||+.+|| |||+.... -||... .....+ + +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 456778888888887653 2459999997 88776433 122100 101111 1 111233
Q ss_pred ChhhHHHHHhCC--CHHHHHHHHHHHHhhhcc
Q 019788 268 DIPLLKKILKGI--SSEEYLLLQSYVLKVRKH 297 (336)
Q Consensus 268 ~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~~ 297 (336)
+..+|.+.+..+ +++...+|.++..++.+.
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQ 358 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 334454444443 567777888887666554
No 93
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=54.29 E-value=21 Score=35.93 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=26.7
Q ss_pred CCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 28 EPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 28 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
|..++|.+|.+.- .|.+.+| .|+++++||+++|=
T Consensus 16 C~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADiiiiN 50 (448)
T PRK14333 16 CQMNKADSERMAG-ILEDMGYQWAEDELQADLVLYN 50 (448)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEE
Confidence 7788888887655 4666666 78999999999983
No 94
>PLN02501 digalactosyldiacylglycerol synthase
Probab=53.14 E-value=50 Score=35.51 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=27.3
Q ss_pred HHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc
Q 019788 208 ADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 246 (336)
Q Consensus 208 ~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 246 (336)
.+.++.+...+.|.-......-+.|||++|| |||..+.
T Consensus 613 ~~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl-PVVATd~ 650 (794)
T PLN02501 613 DDSLHGYKVFINPSISDVLCTATAEALAMGK-FVVCADH 650 (794)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCC-CEEEecC
Confidence 3567777766666544445677999999997 8888874
No 95
>PLN02846 digalactosyldiacylglycerol synthase
Probab=52.20 E-value=49 Score=33.59 Aligned_cols=38 Identities=26% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEeccc
Q 019788 209 DELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 247 (336)
Q Consensus 209 ~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~ 247 (336)
+.++.++..+.|.-......-+.|||++|+ |||..|.-
T Consensus 296 ~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~-PVVa~~~~ 333 (462)
T PLN02846 296 PLFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANHP 333 (462)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCC-cEEEecCC
Confidence 466666766666544445677899999996 88888743
No 96
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=51.96 E-value=89 Score=30.54 Aligned_cols=94 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCC--CC-------CCCCceEEEEcCCCh--hhHHH
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFA--DV-------LNWKSFSIVVATLDI--PLLKK 274 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~--~~-------idw~~~sv~v~~~~~--~~l~~ 274 (336)
++.+.|+.|.-++|=.|.+- +.|+...| +|+|+ +.+|.. ++ +-=...+..++++++ .+|.+
T Consensus 245 dm~~~~~~ADLvIsRaGa~T----i~E~~a~g-~P~Il---iP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~ 316 (357)
T COG0707 245 DMAALLAAADLVISRAGALT----IAELLALG-VPAIL---VPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316 (357)
T ss_pred hHHHHHHhccEEEeCCcccH----HHHHHHhC-CCEEE---eCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHH
Confidence 77889999999999887652 78887777 68887 333333 00 111357888898884 45666
Q ss_pred HHhCC--CHHHHHHHHHHHHhhhccceeccCCCCccHHHHHHHHH
Q 019788 275 ILKGI--SSEEYLLLQSYVLKVRKHFQWHVFPSDYDAFYMVMYEL 317 (336)
Q Consensus 275 ~L~~i--~~~~~~~m~~~~~~~~~~f~y~~~~~~~daf~~~~~~l 317 (336)
.|..+ +++++.+|.++.+.+.. .||...+...+
T Consensus 317 ~i~~l~~~~~~l~~m~~~a~~~~~----------p~aa~~i~~~~ 351 (357)
T COG0707 317 LILRLLSNPEKLKAMAENAKKLGK----------PDAAERIADLL 351 (357)
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC----------CCHHHHHHHHH
Confidence 66554 36899999988766633 36666665444
No 97
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=51.69 E-value=25 Score=35.28 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 28 EPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 28 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
|..+++.+|.+.- .|.+.+| .|+++++||+++|
T Consensus 17 C~~N~~dse~~~~-~l~~~G~~~~~~~~~aD~ivi 50 (440)
T PRK14862 17 CPKALVDSERILT-QLRAEGYEISPSYDGADLVIV 50 (440)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 7788888887655 4555666 6888999999998
No 98
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=50.67 E-value=26 Score=35.25 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=26.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
+|..+++.+|.+.-. |.+.+| .|+++++||+++|
T Consensus 15 GC~~N~~dse~~~~~-l~~~G~~~~~~~~~ADviii 49 (445)
T PRK14340 15 GCQMNQADSEIITAL-LQDEGYVPAASEEDADIVLL 49 (445)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEE
Confidence 478888888766554 666666 6889999999998
No 99
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=48.01 E-value=27 Score=35.30 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=27.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
+|..+++.+|.+.-. |.+.+| .|+++++||+++|
T Consensus 29 GC~~N~~dse~~~~~-l~~~G~~~~~~~~~AD~~ii 63 (459)
T PRK14338 29 GCQMNVSDSERLEAA-LQGVGYSPAERPEDADFIVL 63 (459)
T ss_pred CCCCCHHHHHHHHHH-HHHCcCEECCCcccCCEEEE
Confidence 688999999877664 555565 6899999999998
No 100
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.56 E-value=29 Score=34.99 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=26.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
+|..++|.+|.+.- .|.+.+| .|++|++||+.+|
T Consensus 9 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~ADv~ii 43 (455)
T PRK14335 9 GCQMNVAESASMEQ-LLLARGWTKAVDAETCDVLII 43 (455)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 47788888887655 4555555 7899999999998
No 101
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=45.73 E-value=30 Score=34.44 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=26.7
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
+|..++|.+|.+.-. |.+.+| .|+++++||+++|=
T Consensus 10 GC~~N~~dse~~~~~-l~~~G~~~~~~~~~AD~viiN 45 (418)
T PRK14336 10 GCQMNQAESERLGRL-FELWGYSLADKAEDAELVLVN 45 (418)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe
Confidence 377888888876654 555555 78999999999983
No 102
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.08 E-value=33 Score=34.35 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=26.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
+|..++|.+|.+.- .|.+.+| .|+++++||+.+|
T Consensus 9 GC~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADi~ii 43 (440)
T PRK14334 9 GCQMNEYDTHLVES-ELVSLGAEIVDSVDEADFVLV 43 (440)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 37788888887655 4555666 7889999999998
No 103
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.67 E-value=32 Score=34.40 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
+|..++|.+|.+.- .|.+.+| .|+++++||+++|=
T Consensus 10 GC~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADv~iiN 45 (439)
T PRK14328 10 GCQMNEEDSEKLAG-MLKSMGYERTENREEADIIIFN 45 (439)
T ss_pred CCCCCHHHHHHHHH-HHHHCcCEECCCcCcCCEEEEe
Confidence 37788888887655 4555665 78889999999983
No 104
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.52 E-value=36 Score=34.07 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=25.9
Q ss_pred CCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 28 EPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 28 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
|..++|.+|.+.-. |.+.+| .|+++++||+.+|
T Consensus 10 C~~N~~ds~~~~~~-l~~~G~~~~~~~~~aDviii 43 (437)
T PRK14331 10 CQMNFNDSEKIKGI-LQTLGYEPADDWEEADLILV 43 (437)
T ss_pred CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEE
Confidence 77888888876554 666665 7888999999998
No 105
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.28 E-value=41 Score=33.92 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=27.2
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
+|..+++.+|.+. ..|.+.+| .|+++++||+.+|=
T Consensus 19 GC~~N~~dse~~~-~~l~~~G~~~~~~~~~ADvviiN 54 (449)
T PRK14332 19 GCQMNEYDSGIVS-SLMRDAEYSTSNDPENSDIIFLN 54 (449)
T ss_pred CCCCCHHHHHHHH-HHHHHCcCEECCCcccCCEEEEE
Confidence 4888888888766 45666665 67899999999983
No 106
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.06 E-value=42 Score=33.72 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCCCcchHHHHHHHHHhcCCcccCCcCCccEEEE
Q 019788 28 EPRGNYASESYFKKAFMKSHFVTKDPSKADLFFL 61 (336)
Q Consensus 28 ~~~~~y~~E~~~~~~L~~S~~rT~dP~eAdlF~v 61 (336)
|..++|.+|.+.- .|.+.+|...++++||+++|
T Consensus 13 C~~N~~dse~~~~-~l~~~G~~~~~~~~ADiiii 45 (446)
T PRK14337 13 CQMNVNDSDWLAR-ALVARGFTEAPEEEARVFIV 45 (446)
T ss_pred CCCcHHHHHHHHH-HHHHCCCEECCcCCCCEEEE
Confidence 7788888887655 46666776566789999998
No 107
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=40.86 E-value=73 Score=30.07 Aligned_cols=67 Identities=21% Similarity=0.413 Sum_probs=41.5
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccCCCC-----CCCCCceEEEEcCCChhhHHHHHh
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-----VLNWKSFSIVVATLDIPLLKKILK 277 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-----~idw~~~sv~v~~~~~~~l~~~L~ 277 (336)
.+..+.|..++.+++-.|.+. +.||+.+| +|+++-.... -++. .+.-...++.+.+.++..+..+|.
T Consensus 239 ~~~~~~l~~ad~vI~~~G~~t----~~Ea~~~g-~P~l~ip~~~-~~eQ~~na~~l~~~g~~~~l~~~~~~~~~~~~~ 310 (321)
T TIGR00661 239 DNFKELIKNAELVITHGGFSL----ISEALSLG-KPLIVIPDLG-QFEQGNNAVKLEDLGCGIALEYKELRLLEAILD 310 (321)
T ss_pred HHHHHHHHhCCEEEECCChHH----HHHHHHcC-CCEEEEcCCC-cccHHHHHHHHHHCCCEEEcChhhHHHHHHHHh
Confidence 368899999999999888762 88999999 4777643210 0011 133345566666666533333333
No 108
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=39.91 E-value=80 Score=34.35 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=53.1
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEE----EEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhC--
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVP----VIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKG-- 278 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIP----Vii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-- 278 (336)
.++...++.+.-|++|.=......-..|||++|+ | +|+++---.+ +.+ ..-++.|++.+...+.+.+..
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 4778899999999988633333455899999998 6 7777632111 112 345889999888766554432
Q ss_pred -CCHHHHHHHHHHHHh
Q 019788 279 -ISSEEYLLLQSYVLK 293 (336)
Q Consensus 279 -i~~~~~~~m~~~~~~ 293 (336)
+++++..++.+.+.+
T Consensus 442 ~m~~~er~~r~~~~~~ 457 (797)
T PLN03063 442 NMSDEERETRHRHNFQ 457 (797)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 355555444444433
No 109
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.54 E-value=42 Score=33.62 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 28 EPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 28 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
|..++|-+|.+... |.+.++ .|+++++||+++|=
T Consensus 13 C~~N~~ds~~~~~~-l~~~g~~~~~~~~~aDvviin 47 (444)
T PRK14325 13 CQMNEYDSSKMADL-LGAEGYELTDDPEEADLILLN 47 (444)
T ss_pred CCCcHHHHHHHHHH-HHHCcCEECCCcCCCCEEEEE
Confidence 77888888876654 555555 78999999999983
No 110
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=38.64 E-value=26 Score=31.16 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=28.2
Q ss_pred cccEEEeecCCCCCcchHHHHHhcCcEEEEEec
Q 019788 213 GSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 245 (336)
Q Consensus 213 ~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d 245 (336)
.-+|||+..|.+..-...|||=..+.|||+-..
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~ts 52 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHTS 52 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEee
Confidence 468999998988888889999999999998543
No 111
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=38.33 E-value=78 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.511 Sum_probs=28.9
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEE
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVII 243 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii 243 (336)
.++.+.|+.|+.+++-.|.+- +.||+.+|+ |+++
T Consensus 242 ~~~~~~m~~ad~vIs~~G~~t----~~Ea~~~g~-P~l~ 275 (318)
T PF13528_consen 242 PDFAELMAAADLVISKGGYTT----ISEALALGK-PALV 275 (318)
T ss_pred HHHHHHHHhCCEEEECCCHHH----HHHHHHcCC-CEEE
Confidence 478999999999999999873 889999996 6665
No 112
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.74 E-value=37 Score=34.16 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=32.3
Q ss_pred hCCCHHHHHHHHHHHHhhhccceeccC------CCCccHHHHHHHHHHHH
Q 019788 277 KGISSEEYLLLQSYVLKVRKHFQWHVF------PSDYDAFYMVMYELWLR 320 (336)
Q Consensus 277 ~~i~~~~~~~m~~~~~~~~~~f~y~~~------~~~~daf~~~~~~l~~r 320 (336)
+..+.+++.++-+.+++..+.+...+. ..+...|+.|+ +++++
T Consensus 275 R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl-~lv~e 323 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETL-DLVEE 323 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHH-HHHHH
Confidence 446788999999999988888887765 23456799998 66554
No 113
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=36.59 E-value=48 Score=33.16 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=26.5
Q ss_pred CCCCCcchHHHHHHHHHhcC-Cc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKS-HF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S-~~-rT~dP~eAdlF~vP 62 (336)
+|..++|.+|.+.-. |.+. +| .|.++++||+++|=
T Consensus 8 GC~~N~~dse~~~~~-l~~~~G~~~~~~~~~aDv~iiN 44 (438)
T TIGR01574 8 GCQMNVRDSEHMAAL-LTAKEGYALTEDAKEADVLLIN 44 (438)
T ss_pred CCCCcHHHHHHHHHH-HHhcCCcEECCCcccCCEEEEe
Confidence 478888888876555 4444 55 78889999999983
No 114
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=35.40 E-value=52 Score=32.76 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=26.8
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
+|..++|.+|.+.- .|.+.+| .|+++++||+++|=
T Consensus 8 GC~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADviiin 43 (420)
T TIGR01578 8 GCTLNNGDSEIMKN-SLAAYGHELVNNAEEADLAILN 43 (420)
T ss_pred CCCCcHHHHHHHHH-HHHHCCCEECCCcccCCEEEEE
Confidence 47788888886554 4666666 78899999999983
No 115
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.30 E-value=65 Score=33.11 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 26 DFEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 26 ~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
.+|..+++.+|.+.- .|.+.+| .|+++++||+++|
T Consensus 74 ~GC~~N~~Dse~~~~-~L~~~Gy~~~~~~~~ADviii 109 (509)
T PRK14327 74 YGCQMNEHDTEVMAG-IFEALGYEPTDDTEDADVILL 109 (509)
T ss_pred CCCCccHHHHHHHHH-HHHHCcCEECCCcCCCCEEEE
Confidence 358888888887654 4556666 6889999999997
No 116
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.50 E-value=58 Score=32.95 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=26.8
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
+|..++|-+|.+.- .|...+| .|.++++||+.+|=
T Consensus 32 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~ADiviiN 67 (467)
T PRK14329 32 GCQMNFADSEIVAS-ILQMAGYNTTENLEEADLVLVN 67 (467)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEe
Confidence 58888888876544 5666666 67889999999983
No 117
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=34.41 E-value=55 Score=32.55 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
+|+.+++.+|.+.-. |.+.+| .|+++++||+++|-
T Consensus 8 GC~~N~~ds~~~~~~-l~~~g~~~~~~~~~aD~v~in 43 (429)
T TIGR00089 8 GCQMNEADSEIMAGL-LKEAGYEVTDDPEEADVIIIN 43 (429)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe
Confidence 477888888865544 555666 68889999999984
No 118
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=34.34 E-value=95 Score=29.69 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=27.9
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEe
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIA 244 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~ 244 (336)
..|...|+.|...++- +|+ .--+.||+.+| -||.+-
T Consensus 220 nPy~~~La~ad~i~VT-~DS--vSMvsEA~~tG-~pV~v~ 255 (311)
T PF06258_consen 220 NPYLGFLAAADAIVVT-EDS--VSMVSEAAATG-KPVYVL 255 (311)
T ss_pred CcHHHHHHhCCEEEEc-Ccc--HHHHHHHHHcC-CCEEEe
Confidence 3688999999888774 555 34699999999 588763
No 119
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=33.80 E-value=1.5e+02 Score=30.26 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=32.3
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecc
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 246 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 246 (336)
-+.+.++.|.+=|.|.=..|..--=+.||+.|||||+-..+
T Consensus 361 la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tG 401 (487)
T COG0297 361 LAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETG 401 (487)
T ss_pred HHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccC
Confidence 56678888999888866666555567899999999998753
No 120
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.26 E-value=74 Score=32.56 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=26.5
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
+|..++|.+|.+.- .|.+.+| .|+++++||+++|
T Consensus 22 GC~~N~~dse~~~~-~L~~~G~~~~~~~e~ADvvvi 56 (502)
T PRK14326 22 GCQMNVHDSERLAG-LLEAAGYVRAAEGQDADVVVF 56 (502)
T ss_pred CCCCcHHHHHHHHH-HHHHCCCEECCCcCCCCEEEE
Confidence 58888888887655 4555566 6788999999998
No 121
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=31.97 E-value=62 Score=32.24 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEEc
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFLP 62 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~vP 62 (336)
+|..++|-+|.+-- .|.+.++ .|.++++||+.+|=
T Consensus 8 GC~~N~~ds~~~~~-~l~~~g~~~~~~~~~aD~viin 43 (430)
T TIGR01125 8 GCPKNLVDSEVMLG-ILREAGYEVTPNYEDADYVIVN 43 (430)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEe
Confidence 47788888876544 4555665 78899999999983
No 122
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.23 E-value=85 Score=31.32 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCCCCcchHHHHHHHHHhcCCc-ccCCcCCccEEEE
Q 019788 27 FEPRGNYASESYFKKAFMKSHF-VTKDPSKADLFFL 61 (336)
Q Consensus 27 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 61 (336)
+|..+++-+|.+.-. |...++ .|+++++||+++|
T Consensus 9 GC~~N~~ds~~~~~~-l~~~g~~~~~~~~~aDlvvi 43 (434)
T PRK14330 9 GCQMNENDSETMAGL-LKKEGFEPASNPEEADVVII 43 (434)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEE
Confidence 377888888876654 555554 6788999999998
No 123
>PF15582 Imm40: Immunity protein 40
Probab=26.63 E-value=94 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=17.7
Q ss_pred hHHHHhccccEEEeecCCCCCcch
Q 019788 206 PYADELLGSKFCLHVKGFEVNTAR 229 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~r 229 (336)
...+++++||||+|--..+.+..|
T Consensus 261 ~~Y~LF~DSTF~F~NiNG~~~~~~ 284 (327)
T PF15582_consen 261 KMYDLFCDSTFCFCNINGTHTRFS 284 (327)
T ss_pred HHHHHhhhceEEEEEecCceeeee
Confidence 677899999999996555544333
No 124
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=25.39 E-value=82 Score=32.69 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=34.0
Q ss_pred cCCCc-hhHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEecccccC
Q 019788 200 SGRLK-TPYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP 250 (336)
Q Consensus 200 ~g~~~-~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lP 250 (336)
.|..+ .++.+.|++|+-=+= -|...-++.=+|||..|| |+|...+..|
T Consensus 327 HG~l~~~ef~~lL~~akvfiG-lGfP~EgPaPlEAia~G~--vFlNp~~~pp 375 (559)
T PF15024_consen 327 HGILSGDEFQQLLRKAKVFIG-LGFPYEGPAPLEAIANGC--VFLNPRFNPP 375 (559)
T ss_pred cCcCCHHHHHHHHHhhhEeee-cCCCCCCCChHHHHHcCC--ccccccCCCC
Confidence 34433 489999999886543 366566777899999999 6666655555
No 125
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=25.30 E-value=84 Score=33.64 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=43.2
Q ss_pred hhHHHHhccccEEEeecCCCCCcchHHHHHhcCc---EEEEEecccc-cCCCCCCCCCceEEEEcCCChhhHHHHHhC
Q 019788 205 TPYADELLGSKFCLHVKGFEVNTARIADSLYYGC---VPVIIANHYD-LPFADVLNWKSFSIVVATLDIPLLKKILKG 278 (336)
Q Consensus 205 ~~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~Gc---IPVii~d~~~-lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 278 (336)
.++...++.+.-|+.|.=......-..|||++|| =++|++...- .+ +... ++.|++.+...+.+.+..
T Consensus 353 ~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~--~l~~----~llv~P~d~~~la~ai~~ 424 (726)
T PRK14501 353 EELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA--ELAE----ALLVNPNDIEGIAAAIKR 424 (726)
T ss_pred HHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH--HhCc----CeEECCCCHHHHHHHHHH
Confidence 4788899999999887533333456889999987 1355554211 11 1111 678888888776665533
No 126
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.07 E-value=1e+02 Score=18.76 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=18.6
Q ss_pred CChhhHHHHHhC--CCHHHHHHHHHHHH
Q 019788 267 LDIPLLKKILKG--ISSEEYLLLQSYVL 292 (336)
Q Consensus 267 ~~~~~l~~~L~~--i~~~~~~~m~~~~~ 292 (336)
+.+..|.+.+.+ |+++++.++++.+.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 345566666654 79999999888764
No 127
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=23.65 E-value=1.3e+02 Score=24.98 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=31.1
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEeccc
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 247 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~ 247 (336)
+|...-.+-+..||.+|.-........|..+|..-|||.++-
T Consensus 40 d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~ 81 (143)
T cd02133 40 DFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNV 81 (143)
T ss_pred ccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecC
Confidence 444444568899998887544566788999999999997654
No 128
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=22.21 E-value=2.2e+02 Score=22.32 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=27.9
Q ss_pred hccccEEEeecCCCCCcchHHHHHhcCcEEEEEeccc
Q 019788 211 LLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 247 (336)
Q Consensus 211 l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~ 247 (336)
-.+-+.+||-+|..........|..+|..-|||.++-
T Consensus 44 ~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~ 80 (126)
T cd00538 44 DVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNG 80 (126)
T ss_pred CccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECC
Confidence 3467888888876443456788999999999997543
No 129
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.43 E-value=1.9e+02 Score=27.65 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcCC-CceEecCCC----------------------chhHHHHhccccEEEeecC
Q 019788 166 SKRNKLAFFAGAVNSPVREKLLQVWRNDS-EIYAHSGRL----------------------KTPYADELLGSKFCLHVKG 222 (336)
Q Consensus 166 ~~R~~l~~F~G~~~~~~R~~l~~~~~~~~-~~~~~~g~~----------------------~~~y~~~l~~S~Fcl~p~G 222 (336)
..|++|+.+-|+=.+.+--+++..+.+.. ...++.|.. ..+..++|.++.=|+..+|
T Consensus 157 ~~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaG 236 (318)
T COG3980 157 PKRDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAG 236 (318)
T ss_pred chheEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccc
Confidence 46789999999755555555555555544 333444410 2368899999999999888
Q ss_pred CCCCcchHHHHHhcCc
Q 019788 223 FEVNTARIADSLYYGC 238 (336)
Q Consensus 223 ~~~~s~rl~dal~~Gc 238 (336)
.+ +|||+..|.
T Consensus 237 st-----lyEa~~lgv 247 (318)
T COG3980 237 ST-----LYEALLLGV 247 (318)
T ss_pred hH-----HHHHHHhcC
Confidence 66 899999884
No 130
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=21.18 E-value=1.2e+02 Score=29.57 Aligned_cols=87 Identities=10% Similarity=0.172 Sum_probs=49.4
Q ss_pred hHHHHhccccEEEeecCCCCCcchHHHHHhcCcEEEEEeccc-ccC-----------CCCC---CCCCceEEEEcCCCh-
Q 019788 206 PYADELLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY-DLP-----------FADV---LNWKSFSIVVATLDI- 269 (336)
Q Consensus 206 ~y~~~l~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~-~lP-----------f~~~---idw~~~sv~v~~~~~- 269 (336)
+..+.|+.|..++++.|.. -+ |++.+|+ |+|+.... .+| |-.. +-=...+.-+-+++.
T Consensus 260 ~~~~~l~aADl~V~~SGt~----tl-Ea~a~G~-P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~ 333 (385)
T TIGR00215 260 DARKAMFAADAALLASGTA----AL-EAALIKT-PMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECT 333 (385)
T ss_pred hHHHHHHhCCEEeecCCHH----HH-HHHHcCC-CEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCC
Confidence 4456889999999998764 25 9999996 77776432 222 2110 000122222222332
Q ss_pred -hhHHHHHhCC--CH----HHHHHHHHHHHhhhccc
Q 019788 270 -PLLKKILKGI--SS----EEYLLLQSYVLKVRKHF 298 (336)
Q Consensus 270 -~~l~~~L~~i--~~----~~~~~m~~~~~~~~~~f 298 (336)
.+|.+.+..+ ++ +...+|++.+.++++.+
T Consensus 334 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 334 PHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 2333333332 34 67788888888888876
No 131
>PF02444 HEV_ORF1: Hepatitis E virus ORF-2 (Putative capsid protein); InterPro: IPR003384 The Hepatitis E virus(HEV) genome is a single-stranded, positive-sense RNA molecule of approximately 7.5 kb []. Three open reading frames (ORF) were identified within the HEV genome: ORF1 encodes nonstructural proteins, ORF2 encodes the putative structural protein(s), and ORF3 encodes a protein of unknown function. ORF2 contains a consensus signal peptide sequence at its amino terminus and a capsid-like region with a high content of basic amino acids similar to that seen with other virus capsid proteins [].; GO: 0030430 host cell cytoplasm
Probab=21.00 E-value=72 Score=25.09 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=21.0
Q ss_pred ccccEEEeecCCCCCcchHHHHHhcCcEEEEEec
Q 019788 212 LGSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 245 (336)
Q Consensus 212 ~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d 245 (336)
.+|-||||=+-+.+.|+--.-+=-+..+|.+++.
T Consensus 14 csscfclccprhrp~srla~~~gg~aavp~vvsg 47 (114)
T PF02444_consen 14 CSSCFCLCCPRHRPVSRLAAVAGGAAAVPAVVSG 47 (114)
T ss_pred cccceeeecCCCCcHHHHHHHhccccccceeeec
Confidence 4789999755566654332222234468888875
No 132
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=20.61 E-value=48 Score=31.86 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=60.4
Q ss_pred cCCCCCcchHHHHHhcCcEEEEEecccccCCCCCCCCCceEEEEcCCChhhHHHHHhCCCHHHHHHHHHH
Q 019788 221 KGFEVNTARIADSLYYGCVPVIIANHYDLPFADVLNWKSFSIVVATLDIPLLKKILKGISSEEYLLLQSY 290 (336)
Q Consensus 221 ~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~~~~~~~m~~~ 290 (336)
.|-++..+.+.+.+.---|+|=+|.--.--|.|+++++++-|....+....|.+.=++++++++.++.+.
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAET 214 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhc
Confidence 4677778899999988888888887777788999999999999999988888888889999988888774
Done!