Query 019789
Match_columns 336
No_of_seqs 162 out of 803
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02485 Branch: Core-2/I-Bran 100.0 2.7E-50 5.9E-55 373.0 9.3 225 62-315 1-244 (244)
2 PLN03183 acetylglucosaminyltra 100.0 1.3E-47 2.8E-52 379.6 23.6 239 57-332 75-353 (421)
3 KOG0799 Branching enzyme [Carb 100.0 4.4E-28 9.6E-33 242.9 16.8 223 57-306 100-350 (439)
4 cd06439 CESA_like_1 CESA_like_ 67.3 21 0.00045 32.1 7.1 104 55-172 24-133 (251)
5 PHA03054 IMV membrane protein; 47.2 29 0.00063 26.5 3.5 35 1-35 31-65 (72)
6 TIGR03472 HpnI hopanoid biosyn 46.1 3E+02 0.0064 27.0 13.0 41 58-99 39-80 (373)
7 PRK14583 hmsR N-glycosyltransf 40.8 2.7E+02 0.0059 28.0 10.7 106 58-173 73-183 (444)
8 PHA02650 hypothetical protein; 38.8 48 0.001 25.9 3.7 25 11-35 42-66 (81)
9 TIGR03111 glyc2_xrt_Gpos1 puta 35.6 4E+02 0.0087 26.8 10.9 26 57-85 46-71 (439)
10 PF14812 PBP1_TM: Transmembran 31.9 4.4 9.6E-05 31.8 -3.0 20 1-20 53-74 (81)
11 PF12575 DUF3753: Protein of u 31.6 69 0.0015 24.6 3.5 33 1-33 31-64 (72)
12 PRK11204 N-glycosyltransferase 29.2 5.6E+02 0.012 25.1 13.5 106 56-174 50-163 (420)
13 cd02511 Beta4Glucosyltransfera 26.2 2.4E+02 0.0051 25.2 6.8 97 61-174 1-100 (229)
14 cd02520 Glucosylceramide_synth 24.2 4.2E+02 0.009 22.8 7.8 40 60-100 1-41 (196)
15 PRK07132 DNA polymerase III su 22.8 4E+02 0.0087 25.7 8.0 99 57-155 14-128 (299)
16 PHA02844 putative transmembran 20.4 1.6E+02 0.0034 22.8 3.6 17 11-27 41-57 (75)
17 PF07747 MTH865: MTH865-like f 20.2 43 0.00093 25.9 0.5 39 120-172 33-71 (75)
18 PF06718 DUF1203: Protein of u 20.1 3.3E+02 0.0071 22.8 5.9 84 63-154 16-105 (117)
No 1
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=2.7e-50 Score=372.99 Aligned_cols=225 Identities=29% Similarity=0.501 Sum_probs=152.7
Q ss_pred EEEEEEecC-CCChHHHHHHHHhHhcCCCeEEEEEeCCCCccc--c-----ccccCccccccccCCcceeecCCccHHHH
Q 019789 62 IAFLFLARR-ELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--E-----LTTRSKFFYGRQLSNSIQVAWGESSMIAA 133 (336)
Q Consensus 62 iAfLilah~-~~~~~~l~~rl~~~l~~~~~~iyIHvD~k~~~~--~-----~~~~~~vf~~r~i~~rv~V~WG~~SlV~A 133 (336)
|||||+||+ ++++ ++++++.++++.+.+|||+|+++... + ....+++++ +++|++|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~---~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQ---LERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHH---HHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHH---HHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 799999998 6677 88999999888999999999996421 1 123455544 78899999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEecCCcccCCChHHHHHHHhcC-C-CCceeccccCCc---CccCCC----CCCCCCCCccc
Q 019789 134 ERLLLEAALE-DPANQRFVLLSDSCVPIYNFSYVYKYLMAS-P-RSFVDSFLDRKE---SRYNPK----MSPTIPKGKWR 203 (336)
Q Consensus 134 ~l~Ll~~AL~-d~~~~~fvlLSgsd~PL~s~~~I~~~L~~~-~-~sFI~~~~~~~~---~RY~~~----m~p~ip~~~~~ 203 (336)
|+.||++|++ +++|+|||||||+|+||+|+++|.+||+++ + .+|++++..... .||.+. +.+..+..+++
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 789999999999999999999999999998 3 788987654321 455443 22222334899
Q ss_pred cccceeeecHHHHHHhhcccchhHHHhhhhcCCCCCcccccchhhhcccccccccCchHHHHHhhCC-CCCCccccCceE
Q 019789 204 KGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMKLQKQHNCIPDEHYVQTLLAMS-ELEGELERRTLT 282 (336)
Q Consensus 204 ~GSqW~~LtR~~ae~vv~~~~i~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~PDE~ffqTlL~ns-~~~~~i~~~~Lr 282 (336)
+|||||+|||++|++|+++....+.++++| +++++|||+||||||+|+ .+++.+.++++|
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~-------------------~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r 215 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYF-------------------RFSLCPDESFFQTLLNNSGHFKDTIVNRNLR 215 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT--------------------TSSSGGGTHHHHH--SSGGG-B-TTTSSSE
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhh-------------------cCccCcchhhHHHhhcccchhcccccCCCEE
Confidence 999999999999999998888777777644 368999999999999999 688889999999
Q ss_pred EeecCCCCCCCCCCcccccccCCCCHHHHHHhH
Q 019789 283 YTQWNLSTTGNQNWHPLTFSYANAGPQQIKEIK 315 (336)
Q Consensus 283 yidW~~~~~~~~~~hP~~f~~~d~~~~~i~~ik 315 (336)
||+|+++. ++||++|+..+++++.|+.||
T Consensus 216 ~i~W~~~~----~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 216 YIDWSRRG----GCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp EE-BTGT-----SS---SSEEEE--GGGHHHH-
T ss_pred EEECCCCC----CCCCCeeeeeeeCHHHHHhhC
Confidence 99999433 799999999999999999886
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=379.57 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=189.6
Q ss_pred CCCCeEEEEEEec-CCCChHHHHHHHHhHhcCCCeEEEEEeCCCCcccc------c-------cccCccccccccCCcce
Q 019789 57 DGPAKIAFLFLAR-RELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDE------L-------TTRSKFFYGRQLSNSIQ 122 (336)
Q Consensus 57 ~~~~KiAfLilah-~~~~~~~l~~rl~~~l~~~~~~iyIHvD~k~~~~~------~-------~~~~~vf~~r~i~~rv~ 122 (336)
..+|||||||++| ++.++ ++||+++++++++.||||+|+++...+ . ...+||++ +.++..
T Consensus 75 ~~~~r~AYLI~~h~~d~~~---l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v---l~k~~~ 148 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEK---LWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYM---ITKANL 148 (421)
T ss_pred CCCCeEEEEEEecCCcHHH---HHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEE---Eeccee
Confidence 3589999999999 66788 999999999999999999999985321 0 12457776 577889
Q ss_pred eecCCccHHHHHHHHHHHHhcC-CCCCEEEEecCCcccCCChHH-HHHHHhcCC-CCceeccccC--C-cCccCCC----
Q 019789 123 VAWGESSMIAAERLLLEAALED-PANQRFVLLSDSCVPIYNFSY-VYKYLMASP-RSFVDSFLDR--K-ESRYNPK---- 192 (336)
Q Consensus 123 V~WG~~SlV~A~l~Ll~~AL~d-~~~~~fvlLSgsd~PL~s~~~-I~~~L~~~~-~sFI~~~~~~--~-~~RY~~~---- 192 (336)
|.|||+|||+|||++|+.+|+. .+|||||||||+||||+++++ |+.|+..+. +|||++..+. + ..|+.+.
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 9999999999999999999984 789999999999999999999 567777765 8999975431 1 1222110
Q ss_pred ---C-----------CCCCCC-CccccccceeeecHHHHHHhhcccchhHHHhhhhcCCCCCcccccchhhhcccccccc
Q 019789 193 ---M-----------SPTIPK-GKWRKGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMKLQKQHNCI 257 (336)
Q Consensus 193 ---m-----------~p~ip~-~~~~~GSqW~~LtR~~ae~vv~~~~i~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 257 (336)
+ .+.+|. .++++|||||+|||++|+|++...+-.+. .+++++.++++
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr------------------~ll~y~~~t~~ 290 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPR------------------TLLMYYTNFVS 290 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHH------------------HHHHHHhcCCC
Confidence 0 012454 78999999999999999999974311111 12246667999
Q ss_pred cCchHHHHHhhCCC-CCCccccCceEEeecCCCCCCCCCCcccccccCCCCHHHHHHhHhcCceeeeeccCccccc
Q 019789 258 PDEHYVQTLLAMSE-LEGELERRTLTYTQWNLSTTGNQNWHPLTFSYANAGPQQIKEIKVVDFSCFYIVKDGYLDE 332 (336)
Q Consensus 258 PDE~ffqTlL~ns~-~~~~i~~~~LryidW~~~~~~~~~~hP~~f~~~d~~~~~i~~ik~~~~~~~~~~~~~~~~~ 332 (336)
|||.||||+|+|++ ++++++|++||||+|+++. +.||++|+.+|+ +++.+++.- |||+...+
T Consensus 291 pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~----~~~P~~l~~~D~-----~~l~~S~~l----FARKFd~d 353 (421)
T PLN03183 291 SPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPP----KQHPHTLSLNDT-----EKMIASGAA----FARKFRRD 353 (421)
T ss_pred CchHHHHHHHhhcccccccccCCceeEEecCCCC----CCCCcccCHHHH-----HHHHhCCCc----cccCCCCC
Confidence 99999999999998 9999999999999999874 579999998875 778887653 99987643
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.4e-28 Score=242.93 Aligned_cols=223 Identities=19% Similarity=0.196 Sum_probs=173.4
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHhHhcCCCeEEEEEeCCCCcccc-------ccccCccccccccCCcceeecCCcc
Q 019789 57 DGPAKIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDE-------LTTRSKFFYGRQLSNSIQVAWGESS 129 (336)
Q Consensus 57 ~~~~KiAfLilah~~~~~~~l~~rl~~~l~~~~~~iyIHvD~k~~~~~-------~~~~~~vf~~r~i~~rv~V~WG~~S 129 (336)
.++.-+||+.++|++.++ +++++++++++.+.++||+|.++.... ....+||+. ++++..|.|||.|
T Consensus 100 ~~~~~~a~~~~v~kd~~~---verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v---~~k~~~v~~~G~s 173 (439)
T KOG0799|consen 100 LKPFPAAFLRVVYKDYEQ---VERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIV---LPKRESVTYGGHS 173 (439)
T ss_pred ccccceEEEEeecccHHH---HHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEE---eccccceecCCch
Confidence 444578888999999999 999999999999999999999985331 113455554 5678999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCCEEEEecCCcccCCChHHHHHHHhc-CCCCceeccccC--CcCc--c-C---C--------
Q 019789 130 MIAAERLLLEAALED-PANQRFVLLSDSCVPIYNFSYVYKYLMA-SPRSFVDSFLDR--KESR--Y-N---P-------- 191 (336)
Q Consensus 130 lV~A~l~Ll~~AL~d-~~~~~fvlLSgsd~PL~s~~~I~~~L~~-~~~sFI~~~~~~--~~~R--Y-~---~-------- 191 (336)
+++|++++|+.+++- .+|+||++|||+|+||+|+.+|.+.|+. ++.|||+..... +..| + . +
T Consensus 174 ~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~ 253 (439)
T KOG0799|consen 174 ILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSP 253 (439)
T ss_pred hhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCC
Confidence 999999999999986 4799999999999999999999999998 559999863321 1111 1 1 0
Q ss_pred CCCCCCCC-CccccccceeeecHHHHHHhhcccchhHHHhhhhcCCCCCcccccchhhhcccccccccCchHHHHHhhCC
Q 019789 192 KMSPTIPK-GKWRKGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMKLQKQHNCIPDEHYVQTLLAMS 270 (336)
Q Consensus 192 ~m~p~ip~-~~~~~GSqW~~LtR~~ae~vv~~~~i~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~PDE~ffqTlL~ns 270 (336)
.+.+.+|. .++++||.|++|+|++|+|++....+... .+++++++.|||+||+||++|+
T Consensus 254 ~~~~~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~~~l--------------------l~~~~~t~~~dE~f~~Tl~~n~ 313 (439)
T KOG0799|consen 254 LPWVILPTALKLFKGSAWVSLSRAFVEYLISGNLPRTL--------------------LMYYNNTYSPDEGFFHTLQCNP 313 (439)
T ss_pred CccccCCCceEEEecceeEEEeHHHHHHHhcCccHHHH--------------------HHHHhCccCcchhhhHhhhccc
Confidence 01122453 78999999999999999999998433332 2466789999999999999999
Q ss_pred CCCCccccCc--eEEeecCCCCCCCCCCcccccccCCC
Q 019789 271 ELEGELERRT--LTYTQWNLSTTGNQNWHPLTFSYANA 306 (336)
Q Consensus 271 ~~~~~i~~~~--LryidW~~~~~~~~~~hP~~f~~~d~ 306 (336)
+...-..++ +|+++|+.+...+.+.||+.++..|.
T Consensus 314 -~~~~g~~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 314 -FGMPGVFNDECLRYTNWDRKDVDPPKQHCHSLTVRDF 350 (439)
T ss_pred -cCCCCcccchhhcceecccccccccccCCcccccccc
Confidence 666556677 99999998432223567777777764
No 4
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=67.34 E-value=21 Score=32.11 Aligned_cols=104 Identities=10% Similarity=-0.034 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEEEecCCCCh-HHHHHHHHhHhc-CCCeEEEEEeCCCCccccc----cccCccccccccCCcceeecCCc
Q 019789 55 HYDGPAKIAFLFLARRELPL-DFLWGSFFEIAD-VENFSIFIHSAPGFVFDEL----TTRSKFFYGRQLSNSIQVAWGES 128 (336)
Q Consensus 55 ~~~~~~KiAfLilah~~~~~-~~l~~rl~~~l~-~~~~~iyIHvD~k~~~~~~----~~~~~vf~~r~i~~rv~V~WG~~ 128 (336)
+.+..++++.+|.+|++... .+.++.+++... .+.+.|+|..|.+.+-... ....++.+ +... .. .
T Consensus 24 ~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~---i~~~---~~--~ 95 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKL---LRFP---ER--R 95 (251)
T ss_pred CCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEE---EEcC---CC--C
Confidence 56678999999999998754 344444444321 1227888888876531110 00101211 1111 11 2
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCChHHHHHHHhc
Q 019789 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (336)
Q Consensus 129 SlV~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s~~~I~~~L~~ 172 (336)
+...|-..+++.| ..|+++++-+.|+|- .+.+.+.+..
T Consensus 96 g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 96 GKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred ChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 3455655566654 238999999999995 4555555543
No 5
>PHA03054 IMV membrane protein; Provisional
Probab=47.25 E-value=29 Score=26.49 Aligned_cols=35 Identities=6% Similarity=0.207 Sum_probs=20.5
Q ss_pred CCCCCCCCCCceeEeehhHHHHHHHHHHHHHHHHH
Q 019789 1 MTKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALFR 35 (336)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (336)
||.|.++....-.-|++|.+++.++++..+.+++.
T Consensus 31 l~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~~ 65 (72)
T PHA03054 31 LSDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLLI 65 (72)
T ss_pred HcCCCCcccccccCCchHHHHHHHHHHHHHHHHHH
Confidence 45554444434566888888876665554444444
No 6
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=46.09 E-value=3e+02 Score=26.95 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=27.6
Q ss_pred CCCeEEEEEEecCCCCh-HHHHHHHHhHhcCCCeEEEEEeCCC
Q 019789 58 GPAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPG 99 (336)
Q Consensus 58 ~~~KiAfLilah~~~~~-~~l~~rl~~~l~~~~~~iyIHvD~k 99 (336)
..|++..+|-+|+..+. .+.++.+.+. +.+.+.|.|=.|.+
T Consensus 39 ~~p~VSViiP~~nee~~l~~~L~Sl~~q-~Yp~~EIivvdd~s 80 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYENLASFCRQ-DYPGFQMLFGVQDP 80 (373)
T ss_pred CCCCeEEEEECCCCChhHHHHHHHHHhc-CCCCeEEEEEeCCC
Confidence 35789999999998754 4556555554 34668888744433
No 7
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=40.83 E-value=2.7e+02 Score=28.00 Aligned_cols=106 Identities=10% Similarity=0.029 Sum_probs=54.5
Q ss_pred CCCeEEEEEEecCCCCh-HHHHHHHHhHhcCCCeEEEEEeCCCCccccc-cccCccccccccCCcceeec--CCccHHHH
Q 019789 58 GPAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVFDEL-TTRSKFFYGRQLSNSIQVAW--GESSMIAA 133 (336)
Q Consensus 58 ~~~KiAfLilah~~~~~-~~l~~rl~~~l~~~~~~iyIHvD~k~~~~~~-~~~~~vf~~r~i~~rv~V~W--G~~SlV~A 133 (336)
..|+++.+|-+|++... .+.++.+.+. +.+++.|+|=.|.+.+-... ... . . . -..++.+.. +.-+.-
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q-~yp~~eIivVdDgs~D~t~~~~~~--~-~-~-~~~~v~vv~~~~n~Gka-- 144 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQ-TYTNIEVIAINDGSSDDTAQVLDA--L-L-A-EDPRLRVIHLAHNQGKA-- 144 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcC-CCCCeEEEEEECCCCccHHHHHHH--H-H-H-hCCCEEEEEeCCCCCHH--
Confidence 45789999999998753 4445555443 34678887766655321100 000 0 0 0 001222222 111222
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCcccCCCh-HHHHHHHhcC
Q 019789 134 ERLLLEAALEDPANQRFVLLSDSCVPIYNF-SYVYKYLMAS 173 (336)
Q Consensus 134 ~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s~-~~I~~~L~~~ 173 (336)
..+..+++....++++.+-+.++|=.+. .++.+.+.++
T Consensus 145 --~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 145 --IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred --HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 2344444445789999999999874332 2244444433
No 8
>PHA02650 hypothetical protein; Provisional
Probab=38.83 E-value=48 Score=25.88 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=18.1
Q ss_pred ceeEeehhHHHHHHHHHHHHHHHHH
Q 019789 11 RHVLWFSWKLVTFFCIAFSLVALFR 35 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (336)
...-|++|.++++++++.+++++|.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~ 66 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFS 66 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHH
Confidence 4467899998887777666666555
No 9
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=35.63 E-value=4e+02 Score=26.80 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=18.9
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHhHh
Q 019789 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA 85 (336)
Q Consensus 57 ~~~~KiAfLilah~~~~~~~l~~rl~~~l 85 (336)
+..|+++.+|-+|++.+. +.+.++++
T Consensus 46 ~~~P~vsVIIP~yNe~~~---l~~~l~sl 71 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDT---LFNCIESI 71 (439)
T ss_pred CCCCCEEEEEEeCCChHH---HHHHHHHH
Confidence 445889999999998865 55555544
No 10
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=31.92 E-value=4.4 Score=31.77 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=1.7
Q ss_pred CCCCCCCCCCc--eeEeehhHH
Q 019789 1 MTKKAAPKVGR--HVLWFSWKL 20 (336)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~ 20 (336)
|++|....+|+ +.+|+-.||
T Consensus 53 m~rK~k~r~rkKrrwlwLlikl 74 (81)
T PF14812_consen 53 MPRKGKKRPRKKRRWLWLLIKL 74 (81)
T ss_dssp ------------------TTTT
T ss_pred cccccccCccccchhHHHHHHH
Confidence 67774433544 444444443
No 11
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=31.60 E-value=69 Score=24.60 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCCCCCCCCCceeEeehhHHHHH-HHHHHHHHHH
Q 019789 1 MTKKAAPKVGRHVLWFSWKLVTF-FCIAFSLVAL 33 (336)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 33 (336)
||-|.+...+...-|++|..++. +.+.+++..|
T Consensus 31 ltdk~~~~~~~~~~~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 31 LTDKKKLKNNKNNKNFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred HcCCccccccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 45566666677888999886654 4444444444
No 12
>PRK11204 N-glycosyltransferase; Provisional
Probab=29.22 E-value=5.6e+02 Score=25.15 Aligned_cols=106 Identities=8% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCCCCeEEEEEEecCCCCh-HHHHHHHHhHhcCCCeEEEEEeCCCCcccc-----c-cccCccccccccCCcceeecCCc
Q 019789 56 YDGPAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVFDE-----L-TTRSKFFYGRQLSNSIQVAWGES 128 (336)
Q Consensus 56 ~~~~~KiAfLilah~~~~~-~~l~~rl~~~l~~~~~~iyIHvD~k~~~~~-----~-~~~~~vf~~r~i~~rv~V~WG~~ 128 (336)
....|+++.+|-+|++.+. .+.++.+.+. +.+.+.|.|=-|.+.+-.. . ...+++.. +.. -..+|
T Consensus 50 ~~~~p~vsViIp~yne~~~i~~~l~sl~~q-~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~---i~~---~~n~G- 121 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGENVEETISHLLAL-RYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRV---IHL---AENQG- 121 (420)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHhC-CCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEE---EEc---CCCCC-
Confidence 3456899999999998754 4445554432 3457788775554432111 0 01111211 110 01122
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCCh-HHHHHHHhcCC
Q 019789 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNF-SYVYKYLMASP 174 (336)
Q Consensus 129 SlV~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s~-~~I~~~L~~~~ 174 (336)
...| +..+++..+.|+++.+-..++|-.+. .++.+.+++++
T Consensus 122 -ka~a----ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 122 -KANA----LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred -HHHH----HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 3333 33444444678999998888774331 33445554443
No 13
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=26.23 E-value=2.4e+02 Score=25.24 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=49.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHhHhcCCCeEEEEEeCCCCccc--cccccCccccccccCCcceeecCCccHHHHHHHHH
Q 019789 61 KIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--ELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLL 138 (336)
Q Consensus 61 KiAfLilah~~~~~~~l~~rl~~~l~~~~~~iyIHvD~k~~~~--~~~~~~~vf~~r~i~~rv~V~WG~~SlV~A~l~Ll 138 (336)
+++.+|.++++... +.+.++++......|.| +|.++.-. +.....++ +.+ ...|+|++ .|--.++
T Consensus 1 ~isvii~~~Ne~~~---l~~~l~sl~~~~~eiiv-vD~gStD~t~~i~~~~~~---~v~----~~~~~g~~--~~~n~~~ 67 (229)
T cd02511 1 TLSVVIITKNEERN---IERCLESVKWAVDEIIV-VDSGSTDRTVEIAKEYGA---KVY----QRWWDGFG--AQRNFAL 67 (229)
T ss_pred CEEEEEEeCCcHHH---HHHHHHHHhcccCEEEE-EeCCCCccHHHHHHHcCC---EEE----ECCCCChH--HHHHHHH
Confidence 47889999998765 77777766322135555 55554311 11111111 111 11566653 2222233
Q ss_pred HHHhcCCCCCEEEEecCCcccCCC-hHHHHHHHhcCC
Q 019789 139 EAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASP 174 (336)
Q Consensus 139 ~~AL~d~~~~~fvlLSgsd~PL~s-~~~I~~~L~~~~ 174 (336)
+. ...+|++.|-+.+.+-.. .+++.+.+.+++
T Consensus 68 ~~----a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 68 EL----ATNDWVLSLDADERLTPELADEILALLATDD 100 (229)
T ss_pred Hh----CCCCEEEEEeCCcCcCHHHHHHHHHHHhCCC
Confidence 33 344678888777776433 334556655543
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=24.24 E-value=4.2e+02 Score=22.76 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=26.2
Q ss_pred CeEEEEEEecCCCC-hHHHHHHHHhHhcCCCeEEEEEeCCCC
Q 019789 60 AKIAFLFLARRELP-LDFLWGSFFEIADVENFSIFIHSAPGF 100 (336)
Q Consensus 60 ~KiAfLilah~~~~-~~~l~~rl~~~l~~~~~~iyIHvD~k~ 100 (336)
|++..+|-++++.+ ..++++.+.+.- .+.+.|.|=.|.+.
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~-~~~~eiivVdd~s~ 41 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQD-YPKYEILFCVQDED 41 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhcc-CCCeEEEEEeCCCc
Confidence 46889999998874 455565655432 35578777555554
No 15
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=22.78 E-value=4e+02 Score=25.71 Aligned_cols=99 Identities=14% Similarity=0.055 Sum_probs=52.7
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHhHh--------cCCCeE-EEEEeC--CCC-cccc---ccccCccccccccCCcc
Q 019789 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA--------DVENFS-IFIHSA--PGF-VFDE---LTTRSKFFYGRQLSNSI 121 (336)
Q Consensus 57 ~~~~KiAfLilah~~~~~~~l~~rl~~~l--------~~~~~~-iyIHvD--~k~-~~~~---~~~~~~vf~~r~i~~rv 121 (336)
.+...+||||....+.--..+...|.+.+ ..+.+. -++++| .+. ..++ ....-+.+....-..++
T Consensus 14 ~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 14 QNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred hCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceE
Confidence 45688999999887775555566665554 211111 244456 221 1121 11111111100013466
Q ss_pred eeecCCccHHHHHHHHHHHHhcC-CCCCEEEEecC
Q 019789 122 QVAWGESSMIAAERLLLEAALED-PANQRFVLLSD 155 (336)
Q Consensus 122 ~V~WG~~SlV~A~l~Ll~~AL~d-~~~~~fvlLSg 155 (336)
-+.++.-.|-++..+.|-.-|+. |++.+|++++.
T Consensus 94 vII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 94 LIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred EEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 67777666665555555455666 57889999886
No 16
>PHA02844 putative transmembrane protein; Provisional
Probab=20.43 E-value=1.6e+02 Score=22.78 Aligned_cols=17 Identities=24% Similarity=-0.013 Sum_probs=10.2
Q ss_pred ceeEeehhHHHHHHHHH
Q 019789 11 RHVLWFSWKLVTFFCIA 27 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (336)
.-+-+.+|..+++++++
T Consensus 41 ~~~~~~~~~~~ii~i~~ 57 (75)
T PHA02844 41 NNVCSSSTKIWILTIIF 57 (75)
T ss_pred cccCChhHHHHHHHHHH
Confidence 44567777776655443
No 17
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=20.19 E-value=43 Score=25.94 Aligned_cols=39 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred cceeecCCccHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCChHHHHHHHhc
Q 019789 120 SIQVAWGESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (336)
Q Consensus 120 rv~V~WG~~SlV~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s~~~I~~~L~~ 172 (336)
+..+.-|+.++-..++ .=+|+++|+|+++.+++.+-+.+
T Consensus 33 ~t~c~~g~~~~ta~El--------------~kll~~~DFP~k~a~~lad~i~~ 71 (75)
T PF07747_consen 33 STTCEAGDVEMTAGEL--------------GKLLTDSDFPYKSAEDLADDIVE 71 (75)
T ss_dssp -----BTTB---TTTT--------------GGGS-GGGSB-SHHHHHHHHHHH
T ss_pred CCccccCCEeeeHHHH--------------HhhCCccCCCCCCHHHHHHHHHH
Confidence 5567777776532221 12688999999999999887754
No 18
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=20.11 E-value=3.3e+02 Score=22.77 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=49.1
Q ss_pred EEEEEecCCCChHHHHHHHHhHhcCCCeEEEEEeCCCCccccccccCccc-ccccc-----CCcceeecCCccHHHHHHH
Q 019789 63 AFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDELTTRSKFF-YGRQL-----SNSIQVAWGESSMIAAERL 136 (336)
Q Consensus 63 AfLilah~~~~~~~l~~rl~~~l~~~~~~iyIHvD~k~~~~~~~~~~~vf-~~r~i-----~~rv~V~WG~~SlV~A~l~ 136 (336)
.+|++.|...+. ..-..+..-||||...-...........++ -++.+ ...-.+.+|........-.
T Consensus 16 ~~lLlsy~p~~~--------~~PY~e~gpIFvha~~c~~~~~~~~~P~~l~~~r~~~lR~Y~a~~~iv~g~v~~g~~~~~ 87 (117)
T PF06718_consen 16 ELLLLSYRPFPA--------PSPYRETGPIFVHAEACEAYDGVDELPPVLYRGRLLSLRAYDADGRIVTGRVVEGADIEA 87 (117)
T ss_pred eEEEEecCCCCC--------CCCCCCCCCEEEecCcccCCCCCCCCChhhccCCCeEEEeEcCCCCEEeeeEEcchhHHH
Confidence 466778877643 111245677999998753322211122222 22211 1222344888777777777
Q ss_pred HHHHHhcCCCCCEEEEec
Q 019789 137 LLEAALEDPANQRFVLLS 154 (336)
Q Consensus 137 Ll~~AL~d~~~~~fvlLS 154 (336)
.++++++|++.+|+|.=|
T Consensus 88 ~l~~~fa~p~VayVHvr~ 105 (117)
T PF06718_consen 88 RLAELFADPEVAYVHVRN 105 (117)
T ss_pred HHHHHhcCCCceEEEeec
Confidence 888999999988888644
Done!