Query 019789
Match_columns 336
No_of_seqs 162 out of 803
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 9.3E-47 3.2E-51 372.1 16.4 240 56-330 80-366 (391)
2 1qg8_A Protein (spore coat pol 39.1 1.7E+02 0.0059 24.5 10.1 111 60-178 1-122 (255)
3 2fy7_A Beta-1,4-galactosyltran 37.6 88 0.003 28.4 7.6 80 59-163 64-146 (287)
4 3ckj_A Putative uncharacterize 35.6 2.5E+02 0.0085 25.3 11.6 112 57-178 45-166 (329)
5 4fix_A UDP-galactofuranosyl tr 31.3 51 0.0018 33.8 5.3 112 57-174 177-297 (657)
6 1iio_A Conserved hypothetical 15.4 44 0.0015 25.3 0.7 21 152-172 60-80 (84)
7 3q80_A 2-C-methyl-D-erythritol 9.8 3.8E+02 0.013 23.1 5.2 52 120-172 73-124 (231)
8 1jsd_A Haemagglutinin (HA1 cha 9.6 1.5E+02 0.005 27.9 2.4 60 122-181 49-117 (319)
9 3fxd_A Protein ICMQ; helix bun 9.6 1.6E+02 0.0053 20.6 1.9 20 130-149 9-28 (57)
10 1vpa_A 2-C-methyl-D-erythritol 8.8 4.7E+02 0.016 21.7 5.4 50 121-172 82-131 (234)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=9.3e-47 Score=372.13 Aligned_cols=240 Identities=14% Similarity=0.152 Sum_probs=184.8
Q ss_pred CCCCCeEEEEEEecCCCChHHHHHHHHhHhcCCCeEEEEEeCCCCccc--ccc-----ccCccccccccCCcceeecCCc
Q 019789 56 YDGPAKIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--ELT-----TRSKFFYGRQLSNSIQVAWGES 128 (336)
Q Consensus 56 ~~~~~KiAfLilah~~~~~~~l~~rl~~~l~~~~~~iyIHvD~k~~~~--~~~-----~~~~vf~~r~i~~rv~V~WG~~ 128 (336)
.+.++||||||++|+++++ |++|+++++++.+.||||+|+++... +.. ..+++++ +++++.|.|||+
T Consensus 80 ~e~~~kiAflil~h~d~~~---l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v---~~~~~~v~WGg~ 153 (391)
T 2gak_A 80 EEVGFPIAYSIVVHHKIEM---LDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFV---ASQLESVVYASW 153 (391)
T ss_dssp HHHTSCEEEEEEECSCHHH---HHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEE---CSSCCCCCTTSH
T ss_pred cccCCCEEEEEEecCCHHH---HHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEE---eccCcccccCCc
Confidence 3456999999999999877 99999999889999999999997532 111 1345544 457999999999
Q ss_pred cHHHHHHHHHHHHhcC-CCCCEEEEecCCcccCCChHHHHHHHhcC-CCCceeccccC--CcCccC--CC-----C----
Q 019789 129 SMIAAERLLLEAALED-PANQRFVLLSDSCVPIYNFSYVYKYLMAS-PRSFVDSFLDR--KESRYN--PK-----M---- 193 (336)
Q Consensus 129 SlV~A~l~Ll~~AL~d-~~~~~fvlLSgsd~PL~s~~~I~~~L~~~-~~sFI~~~~~~--~~~RY~--~~-----m---- 193 (336)
|||+|+++||+.||++ ++|+|||||||+|+||+|+++|++||+.+ ++|||+++.++ +..|+. .. +
T Consensus 154 S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~~~~ 233 (391)
T 2gak_A 154 TRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTG 233 (391)
T ss_dssp HHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGGSHHHHEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCcccccceEeeeeccccceeeec
Confidence 9999999999999985 59999999999999999999999999985 59999987653 234432 10 0
Q ss_pred --CCCCC-CCccccccceeeecHHHHHHhhcccchhHHHhhhhcCCCCCcccccchhhhcccccccccCchHHHHHhhCC
Q 019789 194 --SPTIP-KGKWRKGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMKLQKQHNCIPDEHYVQTLLAMS 270 (336)
Q Consensus 194 --~p~ip-~~~~~~GSqW~~LtR~~ae~vv~~~~i~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~PDE~ffqTlL~ns 270 (336)
...+| ..++++|||||+|||++|++|++|.. .+.|.. +++++|+|||+|||||+.++
T Consensus 234 ~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~-------------------~~k~t~~pDE~ffqTll~~~ 293 (391)
T 2gak_A 234 IVKAPPPLKTPLFSGSAYFVVTREYVGYVLENEN-IQKLME-------------------WAQDTYSPDEFLWATIQRIP 293 (391)
T ss_dssp EECCCCSCSSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHH-------------------HHTTSSSGGGTHHHHHTTST
T ss_pred ccccCCccccceecccceeEecHHHHHHHHhCCc-HHHHHH-------------------HHcCCcCCchhHHHHHhhcc
Confidence 11235 47899999999999999999999853 455554 45579999999999999987
Q ss_pred CCCCcc----------ccCceEEeecCCCCCC--CCCCccc----------ccccCCCCHHHHHHhHhcCceeeeeccCc
Q 019789 271 ELEGEL----------ERRTLTYTQWNLSTTG--NQNWHPL----------TFSYANAGPQQIKEIKVVDFSCFYIVKDG 328 (336)
Q Consensus 271 ~~~~~i----------~~~~LryidW~~~~~~--~~~~hP~----------~f~~~d~~~~~i~~ik~~~~~~~~~~~~~ 328 (336)
++.+.+ +++++|||+|+...+. .++.||. +|+.+| ++.|++++ ++|||+
T Consensus 294 ~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~D-----l~~l~~s~----~lFARK 364 (391)
T 2gak_A 294 EVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGD-----LSWMLRQH----HLFANK 364 (391)
T ss_dssp TSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGG-----HHHHTTSC----CSEEEC
T ss_pred CCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHH-----HHHHHhCC----CceEEc
Confidence 654432 4678999999843210 0123554 788777 47777754 459998
Q ss_pred cc
Q 019789 329 YL 330 (336)
Q Consensus 329 ~~ 330 (336)
..
T Consensus 365 F~ 366 (391)
T 2gak_A 365 FD 366 (391)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=39.06 E-value=1.7e+02 Score=24.54 Aligned_cols=111 Identities=10% Similarity=0.155 Sum_probs=58.4
Q ss_pred CeEEEEEEecCCCCh-HHHHHHHHhHhcCCCeEEEEEeCCCCccc-----cccccCccccccccCCc---ceeecCCccH
Q 019789 60 AKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVFD-----ELTTRSKFFYGRQLSNS---IQVAWGESSM 130 (336)
Q Consensus 60 ~KiAfLilah~~~~~-~~l~~rl~~~l~~~~~~iyIHvD~k~~~~-----~~~~~~~vf~~r~i~~r---v~V~WG~~Sl 130 (336)
|+++.+|.+++.... .+.++.+.+.. .+.+.|.|=-|.+.+-. +.....++.+ +... ....+...+.
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~-~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~---i~~~~~~~~~~~~n~G~ 76 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQT-FSDFELFIMDDNSNEETLNVIRPFLNDNRVRF---YQSDISGVKERTEKTRY 76 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCS-CCCEEEEEEECSCCHHHHHHHGGGGGSTTEEE---EECCCCSHHHHHSSCHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhcc-CCceEEEEEECCCCchHHHHHHHHhhcCCEEE---EecccccccccccccCH
Confidence 689999999998765 44444444432 35677766555443211 1001112211 1100 0000124455
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCcccCCC-hHHHHHHHhcCC-CCce
Q 019789 131 IAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASP-RSFV 178 (336)
Q Consensus 131 V~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s-~~~I~~~L~~~~-~sFI 178 (336)
..|--.+++.| ..+|+++|-+.|++--. .+.+.+.+.+++ ...+
T Consensus 77 ~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v 122 (255)
T 1qg8_A 77 AALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEE
Confidence 66655666655 45889999999887543 234556666554 4444
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=37.64 E-value=88 Score=28.39 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=46.6
Q ss_pred CCeEEEEEEecCCCCh-HHHHHHHHh--HhcCCCeEEEEEeCCCCccccccccCccccccccCCcceeecCCccHHHHHH
Q 019789 59 PAKIAFLFLARRELPL-DFLWGSFFE--IADVENFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAER 135 (336)
Q Consensus 59 ~~KiAfLilah~~~~~-~~l~~rl~~--~l~~~~~~iyIHvD~k~~~~~~~~~~~vf~~r~i~~rv~V~WG~~SlV~A~l 135 (336)
.++++.+|.+++.... ...++.+.. ......+.|+|--| +.+ ++++...|-=
T Consensus 64 ~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d------------------------~~f~~a~a~N 118 (287)
T 2fy7_A 64 PHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQ-AGD------------------------TIFNRAKLLN 118 (287)
T ss_dssp SCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-CSS------------------------SCCCHHHHHH
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEe-CCC------------------------Cccchhhhhh
Confidence 5899999999998754 334444441 01135666665322 110 1112222222
Q ss_pred HHHHHHhcCCCCCEEEEecCCcccCCCh
Q 019789 136 LLLEAALEDPANQRFVLLSDSCVPIYNF 163 (336)
Q Consensus 136 ~Ll~~AL~d~~~~~fvlLSgsd~PL~s~ 163 (336)
.++..|++....+|++++-+.|+|....
T Consensus 119 ~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 119 VGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred hHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 2344455555679999999999998774
No 4
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=35.57 E-value=2.5e+02 Score=25.30 Aligned_cols=112 Identities=12% Similarity=-0.013 Sum_probs=58.7
Q ss_pred CCCCeEEEEEEecCCCCh-HHHHHHHHhHhcCCCeEEEEEeCCCCc-cc-cccc-cCccccccccCCccee---ecCCcc
Q 019789 57 DGPAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFV-FD-ELTT-RSKFFYGRQLSNSIQV---AWGESS 129 (336)
Q Consensus 57 ~~~~KiAfLilah~~~~~-~~l~~rl~~~l~~~~~~iyIHvD~k~~-~~-~~~~-~~~vf~~r~i~~rv~V---~WG~~S 129 (336)
...|++..+|-+++.... .+.++.+.+......+.|.| +|.++. -. +... ...- +..++.+ .=...+
T Consensus 45 ~~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiiv-VDdgS~D~t~~~~~~~~~~-----~~~~~~~~~~~~~n~G 118 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIV-LDSGSTDDTEIRAVAAGAR-----VVSREQALPEVPIRPG 118 (329)
T ss_dssp TTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEE-EECSCCSSHHHHHHHTTCE-----EEEHHHHCTTSCCCCS
T ss_pred ccCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEE-EeCCCCchHHHHHHHhhhh-----hccceeeeccCCCCCC
Confidence 346899999999998754 44555555543223477777 554432 11 0000 0000 0011111 112233
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCcccCCC--hHHHHHHHhcCC-CCce
Q 019789 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYN--FSYVYKYLMASP-RSFV 178 (336)
Q Consensus 130 lV~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s--~~~I~~~L~~~~-~sFI 178 (336)
...|.-.+++.| .-+|+++|-+.|.++.+ ...+.+.|.+++ ...+
T Consensus 119 ~~~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v 166 (329)
T 3ckj_A 119 KGEALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLV 166 (329)
T ss_dssp HHHHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEE
T ss_pred HHHHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEE
Confidence 566666666655 34788888888873332 355666665554 4444
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=31.27 E-value=51 Score=33.78 Aligned_cols=112 Identities=11% Similarity=-0.045 Sum_probs=60.6
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHhHhcC------CCeEEEEEeCCCCcccccccc-CccccccccCCcceeec-CCc
Q 019789 57 DGPAKIAFLFLARRELPLDFLWGSFFEIADV------ENFSIFIHSAPGFVFDELTTR-SKFFYGRQLSNSIQVAW-GES 128 (336)
Q Consensus 57 ~~~~KiAfLilah~~~~~~~l~~rl~~~l~~------~~~~iyIHvD~k~~~~~~~~~-~~vf~~r~i~~rv~V~W-G~~ 128 (336)
..++||+.+|.+++..+. +.+.++++-. ..+.| |=||.++.-...... ..+. .....++.+.. +..
T Consensus 177 ~~~pkVSVVIptYN~~~~---L~~~L~SL~~qt~~~~~~~EI-IVVDNgStD~s~~~~~~e~~--~~~~~~I~vI~~~N~ 250 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPAD---CVNALRELTADPLVDQVIGAV-IVPDQGERKVRDHPDFPAAA--ARLGSRLSIHDQPNL 250 (657)
T ss_dssp CSCCCEEEECCBSSCHHH---HHHHHHHHTTSHHHHTTEEEE-EEEECSSSCGGGSTTHHHHH--HHHGGGEEEEECCCC
T ss_pred CCCCeEEEEEEecCCHHH---HHHHHHHHHcCccccCCCCEE-EEEECcCCCccchHHHHHHH--HhcCCCEEEEECCCC
Confidence 446899999999998765 6666665532 22244 446655531100000 0000 00011333332 123
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCC-hHHHHHHHhcCC
Q 019789 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASP 174 (336)
Q Consensus 129 SlV~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s-~~~I~~~L~~~~ 174 (336)
..-.|-=.+++.|....+.+|+++|-+.+++-.. .+.+.+++..++
T Consensus 251 G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~ 297 (657)
T 4fix_A 251 GGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAK 297 (657)
T ss_dssp HHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBS
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCC
Confidence 3445666788888875567899999888877532 234555555554
No 6
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=15.40 E-value=44 Score=25.31 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=17.7
Q ss_pred EecCCcccCCChHHHHHHHhc
Q 019789 152 LLSDSCVPIYNFSYVYKYLMA 172 (336)
Q Consensus 152 lLSgsd~PL~s~~~I~~~L~~ 172 (336)
+|.++|+|+++.+++.+-+..
T Consensus 60 ll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHHH
Confidence 578899999999998887753
No 7
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=9.79 E-value=3.8e+02 Score=23.09 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=35.5
Q ss_pred cceeecCCccHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCChHHHHHHHhc
Q 019789 120 SIQVAWGESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (336)
Q Consensus 120 rv~V~WG~~SlV~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s~~~I~~~L~~ 172 (336)
.+.+.-||-+...+.+..++.+-++.+.+ ++++-..|.|+.+.+.|...+..
T Consensus 73 ~v~~v~gg~~r~~sv~~gl~~~~~~~~~d-~Vlv~~~d~Pli~~~~i~~li~~ 124 (231)
T 3q80_A 73 RAMIVAGGSNRTDTVNLALTVLSGTAEPE-FVLVHDAARALTPPALVARVVEA 124 (231)
T ss_dssp GCEEEECCSSHHHHHHHHHGGGC---CCS-EEEECCTTCTTCCHHHHHHHHHH
T ss_pred CeEEEcCCCchHHHHHHHHHHhhhcCCCC-EEEEEcCCcCCCCHHHHHHHHHH
Confidence 34555688877777666665442211123 68889999999999999888765
No 8
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=9.61 E-value=1.5e+02 Score=27.87 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=38.5
Q ss_pred eeecCCccHHHHHHHHH--HHHhcCCCCCEEEE----ecCCccc--CCChHHHHHHHhcCC-CCceecc
Q 019789 122 QVAWGESSMIAAERLLL--EAALEDPANQRFVL----LSDSCVP--IYNFSYVYKYLMASP-RSFVDSF 181 (336)
Q Consensus 122 ~V~WG~~SlV~A~l~Ll--~~AL~d~~~~~fvl----LSgsd~P--L~s~~~I~~~L~~~~-~sFI~~~ 181 (336)
.+.-|.=++.-+.+-== ...|....|+|+|= ..|-||| +.+-++|.+.|++.. .++++.+
T Consensus 49 pl~l~~Cti~g~ilGnP~CD~ll~~~~WsyiVEr~~~~ng~CYPG~~~d~eeLR~l~ss~~s~er~~~~ 117 (319)
T 1jsd_A 49 PLILDTCTIEGLIYGNPSCDLLLGGREWSYIVERPSAVNGMCYPGNVENLEELRSLFSSASSYQRIQIF 117 (319)
T ss_dssp CEEESSBCHHHHHHTCTTCGGGTTCEECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHSSEEEEEESS
T ss_pred ceecCccceeeEEecCccccccCCCCceEEEEeCCCCCCCcccCcccCCHHHHHHHHhccCccceEEec
Confidence 44556666554432100 01122356999998 4578999 678889999998865 6777765
No 9
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=9.55 E-value=1.6e+02 Score=20.60 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcCCCCCE
Q 019789 130 MIAAERLLLEAALEDPANQR 149 (336)
Q Consensus 130 lV~A~l~Ll~~AL~d~~~~~ 149 (336)
+.+|.|..|.+|++.++|+.
T Consensus 9 q~~aILkaLdeaIe~GPWe~ 28 (57)
T 3fxd_A 9 QKETILKALNDAIEKGPWDK 28 (57)
T ss_dssp HHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHcCCchH
Confidence 67899999999999888863
No 10
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=8.80 E-value=4.7e+02 Score=21.68 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=34.7
Q ss_pred ceeecCCccHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCChHHHHHHHhc
Q 019789 121 IQVAWGESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (336)
Q Consensus 121 v~V~WG~~SlV~A~l~Ll~~AL~d~~~~~fvlLSgsd~PL~s~~~I~~~L~~ 172 (336)
+...-||-++..+....++.+-+. ..+ ++++...|.|+.+.+.|...+..
T Consensus 82 ~~~~~gg~~~~~sv~~al~~~~~~-~~~-~vlv~~~D~Pli~~~~i~~l~~~ 131 (234)
T 1vpa_A 82 LGIVEGGDTRSQSVRSALEFLEKF-SPS-YVLVHDSARPFLRKKHVSEVLRR 131 (234)
T ss_dssp EEEEECCSSHHHHHHHHHHHHGGG-CCS-EEEEEETTSCCCCHHHHHHHHHH
T ss_pred eEEeCCCCcHHHHHHHHHHHhhhc-CCC-EEEEecCcccCCCHHHHHHHHHH
Confidence 455668888888888888765221 235 55666679999999888777653
Done!