BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019791
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 166/319 (52%), Gaps = 32/319 (10%)
Query: 36 IKITKKDFDPPFTDPEPKGPHFELFIDQIVSASNSYGMIVNSFYELEPLFADHCNRVG-- 93
+ + KDF P D K ++ + + G++VN+F+ELEP G
Sbjct: 175 VPVAGKDFLDPAQDR--KDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLD 232
Query: 94 KPKSWCVGPLCLAXXXXXXXXXXXXXXXXAWIKWLDRKLDEGSSVMYVAFGSQAEISAQQ 153
KP + VGPL +KWLD + SV+YV+FGS ++ +Q
Sbjct: 233 KPPVYPVGPLV-----NIGKQEAKQTEESECLKWLDNQ--PLGSVLYVSFGSGGTLTCEQ 285
Query: 154 LKEIATGLEQSKVNFLWVIRKAE-----------------SELGDGFEERVKGRGLVVRD 196
L E+A GL S+ FLWVIR + L GF ER K RG V+
Sbjct: 286 LNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF 345
Query: 197 WVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALR 256
W Q ++L H S GFL+HCGWNS LES+ +G+P++AWP+ A+Q +NA +++E+I+ ALR
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 405
Query: 257 VETCDGSVRGFGKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEGEKGSSWRCLD 316
D G + + + + V+ LM GE+G+ R K+KEL E A + ++ + G+S + L
Sbjct: 406 PRAGDD---GLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLK-DDGTSTKALS 461
Query: 317 MLLDETSKYEQQMHDDKNN 335
++ + +++++ + N+
Sbjct: 462 LVALKWKAHKKELEQNGNH 480
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 31/285 (10%)
Query: 52 PKGPHFELFIDQIVSASNSYGMIVNSFYELEPLFADHCNRVGK--PKSWCVGPLCLAXXX 109
P E FI+ + +++N+F ELE +D N + P + +GPL
Sbjct: 208 PNDIMLEFFIEVADRVNKDTTILLNTFNELE---SDVINALSSTIPSIYPIGPLPSLLKQ 264
Query: 110 XXXXXXXXXXXXXAW------IKWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQ 163
W + WL+ K E SV+YV FGS ++ +QL E A GL
Sbjct: 265 TPQIHQLDSLDSNLWKEDTECLDWLESK--EPGSVVYVNFGSTTVMTPEQLLEFAWGLAN 322
Query: 164 SKVNFLWVIRK-----AESELGDGFEERVKGRGLVVRDWVDQKEILWHESVQGFLSHCGW 218
K +FLW+IR F + RGL+ W Q ++L H S+ GFL+HCGW
Sbjct: 323 CKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGW 381
Query: 219 NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFGKWQGLEKTVR 278
NS ESICAGVP+L WP ADQP + R + E ++ + ++T K + L K +
Sbjct: 382 NSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN-------VKREELAKLIN 434
Query: 279 ELMGGEKGEKARTKVKELSEIARKAMEGEK--GSSWRCLDMLLDE 321
E++ G+KG+K + K EL +KA E + G S+ L+ ++ +
Sbjct: 435 EVIAGDKGKKMKQKAMELK---KKAEENTRPGGCSYMNLNKVIKD 476
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 119/201 (59%), Gaps = 11/201 (5%)
Query: 125 IKWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIR-KAESELGDGF 183
++WL + + +SV+Y++FG+ ++ ++ LE S+V F+W +R KA L +GF
Sbjct: 262 LQWLKER--KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF 319
Query: 184 EERVKGRGLVVRDWVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLN 243
E+ +G G+VV W Q E+L HE+V F++HCGWNS ES+ GVP++ P DQ LN
Sbjct: 320 LEKTRGYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 244 ARMVTEEIKVALRVETCDGSVRGFGKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKA 303
RMV + +++ +R+E G V F K GL +++ EKG+K R ++ L E A +A
Sbjct: 379 GRMVEDVLEIGVRIE---GGV--FTK-SGLMSCFDQILSQEKGKKLRENLRALRETADRA 432
Query: 304 MEGEKGSSWRCLDMLLDETSK 324
+ G KGSS L+D SK
Sbjct: 433 V-GPKGSSTENFITLVDLVSK 452
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 145/264 (54%), Gaps = 21/264 (7%)
Query: 69 NSYGMIVNSFYELEP----LFADHCNRVGKPKSWCVGPLCLAXXXXXXXXXXXXXXXXAW 124
++ G+IVN+F +LE DH ++ P + VGPL
Sbjct: 211 DTKGIIVNTFSDLEQSSIDALYDHDEKI--PPIYAVGPLL--DLKGQPNPKLDQAQHDLI 266
Query: 125 IKWLDRKLDEGSSVMYVAFGSQA-EISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGF 183
+KWLD + D+ SV+++ FGS Q++EIA GL+ S V FLW + +GF
Sbjct: 267 LKWLDEQPDK--SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGF 324
Query: 184 EE--RVKGRGLVVRDWVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQP 241
E ++G+G++ W Q E+L H+++ GF+SHCGWNS LES+ GVPIL WPI A+Q
Sbjct: 325 LEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 242 LNA-RMVTE-EIKVALRVETCDGSVRGFGKWQGLEKTVRELMGGEKGEKARTKVKELSEI 299
LNA R+V E + + LRV+ GS + +EK +++LM +K KV+E+ E+
Sbjct: 384 LNAFRLVKEWGVGLGLRVDYRKGS--DVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEM 439
Query: 300 ARKAMEGEKGSSWRCLDMLLDETS 323
+R A+ + GSS + L+D+ +
Sbjct: 440 SRNAVV-DGGSSLISVGKLIDDIT 462
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 145/264 (54%), Gaps = 21/264 (7%)
Query: 69 NSYGMIVNSFYELEP----LFADHCNRVGKPKSWCVGPLCLAXXXXXXXXXXXXXXXXAW 124
++ G+IVN+F +LE DH ++ P + VGPL
Sbjct: 211 DTKGIIVNTFSDLEQSSIDALYDHDEKI--PPIYAVGPLL--DLKGQPNPKLDQAQHDLI 266
Query: 125 IKWLDRKLDEGSSVMYVAFGSQA-EISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGF 183
+KWLD + D+ SV+++ FGS Q++EIA GL+ S V FLW + +GF
Sbjct: 267 LKWLDEQPDK--SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGF 324
Query: 184 EE--RVKGRGLVVRDWVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQP 241
E ++G+G++ W Q E+L H+++ GF+SHCGWNS LES+ GVPIL WPI A+Q
Sbjct: 325 LEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 242 LNA-RMVTE-EIKVALRVETCDGSVRGFGKWQGLEKTVRELMGGEKGEKARTKVKELSEI 299
LNA R+V E + + LRV+ GS + +EK +++LM +K KV+E+ E+
Sbjct: 384 LNAFRLVKEWGVGLGLRVDYRKGS--DVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEM 439
Query: 300 ARKAMEGEKGSSWRCLDMLLDETS 323
+R A+ + GSS + L+D+ +
Sbjct: 440 SRNAVV-DGGSSLISVGKLIDDIT 462
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 133/297 (44%), Gaps = 33/297 (11%)
Query: 30 LPEFPWIKITK------KDFDPPFTDPEPKGPHFELFIDQIVSASNSYGMIVNSFYELEP 83
LP FP +K + KD D PF + + + + +NSF + P
Sbjct: 179 LPGFPELKASDLPEGVIKDIDVPFAT---------MLHKMGLELPRANAVAINSFATIHP 229
Query: 84 LFADHCNRVGKPKSWCVGPLCLAXXXXXXXXXXXXXXXXAWIKWLDRKLDEGSSVMYVAF 143
L + N K VGP L ++WLD+ E SSV+Y++F
Sbjct: 230 LIENELNSKFK-LLLNVGPFNLTTPQRKVSDEH------GCLEWLDQH--ENSSVVYISF 280
Query: 144 GSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESE-LGDGFEERVKGRGLVVRDWVDQKE 202
GS +L +A LE+ F+W R E L GF ER K +G +V W Q E
Sbjct: 281 GSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVA-WAPQVE 339
Query: 203 ILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDG 262
IL H SV FL+H GWNS LE I GVP+++ P DQ LN + +++ + V+
Sbjct: 340 ILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD---- 395
Query: 263 SVRGFGKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEGEKGSSWRCLDMLL 319
G + ++K + M EKG R K+ +L E A KA+E + G+S L+
Sbjct: 396 --NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVE-QNGTSAMDFTTLI 449
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 136 SSVMYVAFGSQ-AEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVV 194
+ V+ + GS + + ++ IA+ L Q LW DG + G +
Sbjct: 21 NGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF--------DGNKPDTLGLNTRL 72
Query: 195 RDWVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLN 243
W+ Q ++L H + F++H G N E+I G+P + P+ ADQP N
Sbjct: 73 YKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 194 VRDWVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTE 249
V WV Q +IL S F++H G S +E++ VP++A P +A+Q +NA + E
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 194 VRDWVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKV 253
V DWV Q IL + F++H G + E + P++A P DQ NA M+ + + V
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGV 343
Query: 254 ALRVETCDGSVRGFGKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEGEKGSSWR 313
A ++ T + + L +T L+ + E AR + +E+A ++G + R
Sbjct: 344 ARKLATEEATA------DLLRETALALV--DDPEVARRLRRIQAEMA------QEGGTRR 389
Query: 314 CLDMLLDE-TSKYEQQ 328
D++ E +++E+Q
Sbjct: 390 AADLIEAELPARHERQ 405
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 127 WLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEER 186
WL + D ++Y+ G+ + + + L+ GL + L + G
Sbjct: 234 WLSSR-DTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVL---------VASGPSLD 283
Query: 187 VKGRGLV-----VRDWVDQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQ 240
V G G V + WV Q +L H V + H G + L ++ AGVP L++P D
Sbjct: 284 VSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,019,705
Number of Sequences: 62578
Number of extensions: 395648
Number of successful extensions: 927
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 16
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)