BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019794
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 318 bits (815), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 148/211 (70%), Positives = 174/211 (82%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 14 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 73
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 74 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 133
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++DGRVVSN
Sbjct: 134 DYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSN 193
Query: 305 FVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
F+ QA++ +P+TVYG G QTR+FQYVSDLV+
Sbjct: 194 FILQALQGEPLTVYGSGSQTRAFQYVSDLVN 224
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 310 bits (794), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 146/211 (69%), Positives = 169/211 (80%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 36 AGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 95
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLN LGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 96 YHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDPEVHPQSE 155
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
YWG+VNPIG R+CYDEGKR AET Y + GVEVR+ARIFNT+GPR +DGRVVSN
Sbjct: 156 DYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXNDGRVVSN 215
Query: 305 FVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
F+ QA++ +P+TVYG G QTR+FQYVSDLV+
Sbjct: 216 FILQALQGEPLTVYGSGSQTRAFQYVSDLVN 246
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 111/219 (50%), Gaps = 24/219 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL---LEV 181
AGF+GSHLVDKL++ G EV+V+DN +GR++ F NP EL D+ + ++
Sbjct: 9 AGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----FVNPSAELHVRDLKDYSWGAGIKG 63
Query: 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGDP--L 238
D ++H A P+ NV+ T N+L A++ G + + S+S VYGD +
Sbjct: 64 DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVI 123
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD 298
P++E Y PI S Y K E + Y R GV R N GPR L
Sbjct: 124 PTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR--LRH 174
Query: 299 GRVVSNFVAQAIRRQP--MTVYGDGKQTRSFQYVSDLVH 335
G V+ +F+ + +RR P + V GDG Q +S+ YV D V
Sbjct: 175 G-VIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVE 211
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 103/216 (47%), Gaps = 22/216 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGF+GSHLVDKL++ G EV+V+D + H R+ + D ++ D +
Sbjct: 9 AGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLK------DYSWGAGIKGDVV 62
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGDP--LEHP 241
+H A P+ NV+ T N+L A++ G + + S+S VYGD + P
Sbjct: 63 FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP 122
Query: 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRV 301
++E Y PI S Y K E + Y R GV R N GPR L G V
Sbjct: 123 EEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR--LRHG-V 172
Query: 302 VSNFVAQAIRRQP--MTVYGDGKQTRSFQYVSDLVH 335
+ +F+ + +RR P + V GDG Q +S+ YV D V
Sbjct: 173 IYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVE 207
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 22/217 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV----VEPILLE 180
AGF+GSH+VDKL +E++VIDN +G ++ F N L++ D+ ++ L
Sbjct: 10 AGFIGSHVVDKL-SESNEIVVIDNLSSGNEE-----FVNEAARLVKADLAADDIKDYLKG 63
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYGDPLE 239
++++H+A NP + + NV+ T +L ++ G ++ + TSTS VYG+
Sbjct: 64 AEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKV 123
Query: 240 HPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDG 299
P E Y P S Y K E L Y ++ I R N G R
Sbjct: 124 IPTPEDY-----PTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTHG-- 176
Query: 300 RVVSNFVAQAIRRQP--MTVYGDGKQTRSFQYVSDLV 334
V+ +F+ + ++R P + + G+G+Q +S+ Y+SD V
Sbjct: 177 -VIYDFIMK-LKRNPEELEILGNGEQNKSYIYISDCV 211
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 98/221 (44%), Gaps = 20/221 (9%)
Query: 125 AGFVGSHLVDKLIDRG------DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPI 177
AGF+GSH V +L+ DEVIV+D+ + G + NL +PR + D+ +
Sbjct: 9 AGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAG 68
Query: 178 LLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTS 231
LL VD I H A + +TNV GT +L A G + + ST
Sbjct: 69 LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTD 128
Query: 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
EVYG W +P+ S Y K ++ + YHR G++VRI R N YG
Sbjct: 129 EVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYG 183
Query: 292 PRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
P + +++ FV + + +YGDG R + + D
Sbjct: 184 PYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 125 AGFVGSHLVDKLIDRG------DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPI 177
AGF+GSH V +L+ DEVIV+D+ + G + NL +PR + D+ +
Sbjct: 9 AGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAG 68
Query: 178 LLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTS 231
LL VD I H A + +TNV GT +L A G + + ST+
Sbjct: 69 LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTN 128
Query: 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
+VYG W +P+ S Y K ++ + YHR G++VRI R N YG
Sbjct: 129 QVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYG 183
Query: 292 PRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
P + +++ FV + + +YGDG R + + D
Sbjct: 184 PYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGR---KDNLVHHFRNPRFELIRHDVVEPILLEV 181
AGF+G HL L+ G+EV V+D+ + P EL D L +V
Sbjct: 16 AGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD-----LSDV 70
Query: 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEH 240
+YHLA S P+ + NV ++L L VG K ++ ST EVYG
Sbjct: 71 RLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTL 129
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPRMCLDDG 299
P E +P+ RS Y K E + + R + EV I R FN YGP D
Sbjct: 130 PTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPD-- 182
Query: 300 RVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
+V A + R + V GDG+Q R F Y++D+V
Sbjct: 183 ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVV 217
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 47 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 106
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 107 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 166
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
YGD P+ E G NP+ S Y K E Y R G + R FN +G
Sbjct: 167 TYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGR 221
Query: 293 RMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R + V+ + A ++ + + GDG+ +R F Y+ +++
Sbjct: 222 RQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 266
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 34 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 94 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 153
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
YGD P+ E G NP+ S Y K E Y R G + R FN +G
Sbjct: 154 TYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGR 208
Query: 293 RMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R + V+ + A ++ + + GDG+ +R F Y+ +++
Sbjct: 209 RQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 253
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 28 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 87
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 88 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 147
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
YGD P+ E G NP+ S Y K E Y R G + R FN +G
Sbjct: 148 TYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGR 202
Query: 293 RMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R + V+ + A ++ + + GDG+ +R F Y+ +++
Sbjct: 203 RQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 247
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 34 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 94 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 153
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
YGD P+ E G NP+ S Y K E Y R G + R FN +G
Sbjct: 154 TYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGR 208
Query: 293 RMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R + V+ + A ++ + + GDG+ +R F Y+ +++
Sbjct: 209 RQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 253
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 24/227 (10%)
Query: 125 AGFVGSHLVDKLIDR-GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS LV +I+ D V+V+D + G +L ++ RF + D+ + L
Sbjct: 10 AGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARV 69
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA----------KRVGAKF 225
+ D + HLA + P I+TN++GT +L A K+ +F
Sbjct: 70 FTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRF 129
Query: 226 LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
ST EVYGD + ++ P S Y K +++ L + R G+ I
Sbjct: 130 HHISTDEVYGDL---HSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITN 186
Query: 286 IFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
N YGP + +++ + A+ + + VYG+G+Q R + YV D
Sbjct: 187 CSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVED 231
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 17/219 (7%)
Query: 126 GFVGSHLVDKLIDR--GDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDV-----VEPI 177
GF+GS+ + ++++ EVI ID G NL +PR+ ++ DV V+ +
Sbjct: 13 GFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKEL 72
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYG 235
+ +VD + HLA + +P + +NV+GT +L +R +F+ ST EVYG
Sbjct: 73 VRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYG 132
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
D L+ E + + S Y K ++ L + + R + I R N YGP
Sbjct: 133 DILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQF 187
Query: 296 LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
+ +++ + +A + +YG GK R + YV D V
Sbjct: 188 PE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHV 224
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 19/225 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++ L+ +V+ +DNF TG + N LV + F+ I+ D+
Sbjct: 36 AGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDD 95
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
VD + H A S +P+ + TN+ G LNML A+ + F ++S
Sbjct: 96 CNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSS 155
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
YGD P+ E G P+ S Y K E + R G R FN +G
Sbjct: 156 TYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGR 210
Query: 293 RMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R + V+ + + I+ + + GDG+ +R F Y+ + V
Sbjct: 211 RQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQ 255
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 125 AGFVGSHLVDKLIDRGDEV--IVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPILLE- 180
AGF+GS+ V + + +V V+D + G K NL R EL+ D+ + L++
Sbjct: 13 AGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL-EAILGDRVELVVGDIADAELVDK 71
Query: 181 ----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236
D I H A + + +P I TN +GT +L A++ +F ST EVYGD
Sbjct: 72 LAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGD 131
Query: 237 -PL--------EHP-QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
PL E P +K T N NP S Y K ++ + + R GV+ I+
Sbjct: 132 LPLREDLPGHGEGPGEKFTAETNYNP---SSPYSSTKAASDLIVKAWVRSFGVKATISNC 188
Query: 287 FNTYGPRMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
N YGP ++ R ++N +A I+ + +YG+GK R + + +D
Sbjct: 189 SNNYGPYQHIEKFIPRQITNILA-GIKPK---LYGEGKNVRDWIHTND 232
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 29/238 (12%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELI------RHDVVEPI 177
GF+GS+L + +G ++IV DN G DNL FE + ++DV I
Sbjct: 10 CGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLI 69
Query: 178 LLEV-DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVY 234
+ D +HLA + NP + NV GTLN+L ++ + + +ST++VY
Sbjct: 70 TKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVY 129
Query: 235 GDPLEHPQKETYWGNVNPIGERSCYDE------------GKRTAETLTMDYHRGAGVEVR 282
GD ++ ET + + + YDE K A+ +DY R G+
Sbjct: 130 GDLEQYKYNETE-TRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTV 188
Query: 283 IARIFNTYGPR-MCLDDGRVVSNFVAQAIR-----RQPMTVYGDGKQTRSFQYVSDLV 334
+ R + YG R D V F +A+ +P T+ G+GKQ R + D++
Sbjct: 189 VFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMI 246
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 14/221 (6%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEV--D 182
AGF+GSH+V+ L+ RG EV V+DN TG+++N+ R +L + VE E
Sbjct: 9 AGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPT 68
Query: 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST-SEVYGDPLEH 240
+ H A AS +PV + N++G LN+L ++ G K + ST +YG+ E
Sbjct: 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEG 128
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM-CLDDG 299
+ E W P +S Y K E Y + G++ R N YGPR +
Sbjct: 129 ERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEA 184
Query: 300 RVVSNFVAQAIRRQPMTVY-----GDGKQTRSFQYVSDLVH 335
VV+ F + ++ P+T+Y GD R + YV D+
Sbjct: 185 GVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 32/227 (14%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VEPILL 179
AGFVG +L + L ++ EV F T R + + P E+I D+ V+ ++
Sbjct: 21 AGFVGKYLANHLTEQNVEV-----FGTSRN----NEAKLPNVEMISLDIMDSQRVKKVIS 71
Query: 180 EV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAKFLLTSTSEVYG 235
++ D I+HLA +S N T TNV GTL++L + + + L +SE YG
Sbjct: 72 DIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYG 131
Query: 236 D--PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
P E P E N + S Y K + L Y + G+++ R FN GP
Sbjct: 132 MILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPG 186
Query: 294 MCLDDGRVVSNFVAQAI-----RRQPMTVYGDGKQTRSFQYVSDLVH 335
L G V +F Q + +++P+ G+ + R F V D+V
Sbjct: 187 QSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 231
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNF----FTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
AGF+GS+ V + + E I NF ++G +N+ +P + ++ ++ LLE
Sbjct: 33 AGFIGSNFVHYXL-QSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLE 91
Query: 181 -------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GAKFLLTSTSE 232
V I + A + NP+ TNV+GT+ +L L K+ K + ST E
Sbjct: 92 HVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDE 151
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
VYG K + P+ S Y K +A+ + + Y++ + V + R N YGP
Sbjct: 152 VYGSL----GKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRCSNNYGP 207
Query: 293 RMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ +++ V A+ + + +YGDG R + +V+D
Sbjct: 208 YQYPE--KLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTD 245
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 28/233 (12%)
Query: 125 AGFVGSHLVDKLI-DRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS +V +I + D V+ ID + G ++L + R+ D+ + +
Sbjct: 9 AGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----------KF 225
+ D + HLA + P I+TN++GT +L +A++ + +F
Sbjct: 69 FEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRF 128
Query: 226 LLTSTSEVYGDPLEHPQKET------YWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGV 279
ST EVYGD L HP + + S Y K +++ L + R G+
Sbjct: 129 HHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGL 187
Query: 280 EVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ N YGP + +++ + A+ +P+ +YG G Q R + YV D
Sbjct: 188 PTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 20/222 (9%)
Query: 126 GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFE---LIRHDVVEPILLEVD 182
GF+G HL ++++ D + + T R +LV H R FE I + VE + + D
Sbjct: 34 GFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCD 93
Query: 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG----DPL 238
I L A+P Y P++ + + L ++ A + G + STSEVYG +
Sbjct: 94 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQF 153
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD- 297
+ +G +N R Y K+ + + Y G+ + R FN GP LD
Sbjct: 154 DPDASALTYGPINK--PRWIYACSKQLMDRVIWGYGM-EGLNFTLFRPFNWIGP--GLDS 208
Query: 298 -------DGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
RVV+ F+ +R + +++ G Q R+F YV D
Sbjct: 209 IYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDD 250
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 19/224 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD--P 237
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y +
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
LE + P + Y K E L Y++ G+E RI R N YGP
Sbjct: 155 LETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWK 214
Query: 298 DGRVVSNFVAQAIRRQPMT------VYGDGKQTRSFQYVSDLVH 335
GR + A R+ T ++GDG QTRSF ++ + V
Sbjct: 215 GGREAA---PAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 13/221 (5%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD--P 237
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y +
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
LE + P + Y K E L Y++ G+E RI R N YGP
Sbjct: 155 LETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWK 214
Query: 298 DGR--VVSNFVAQA-IRRQPMTVYGDGKQTRSFQYVSDLVH 335
GR + F +A ++GDG QTRSF ++ + V
Sbjct: 215 GGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 13/221 (5%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD--P 237
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y +
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
LE + P + Y + E L Y++ G+E RI R N YGP
Sbjct: 155 LETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWK 214
Query: 298 DGR--VVSNFVAQA-IRRQPMTVYGDGKQTRSFQYVSDLVH 335
GR + F +A ++GDG QTRSF ++ + V
Sbjct: 215 GGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 13/221 (5%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD--P 237
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y +
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
LE + P + + K E L Y++ G+E RI R N YGP
Sbjct: 155 LETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWK 214
Query: 298 DGR--VVSNFVAQA-IRRQPMTVYGDGKQTRSFQYVSDLVH 335
GR + F +A ++GDG QTRSF ++ + V
Sbjct: 215 GGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMC 137
Query: 238 LEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ E + V P+ + R Y K+ + + Y G++ + R FN GPR+
Sbjct: 138 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 197
Query: 296 ------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ R ++ + + P+ + GKQ R F + D
Sbjct: 198 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 240
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMC 137
Query: 238 LEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ E + V P+ + R Y K+ + + Y G++ + R FN GPR+
Sbjct: 138 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 197
Query: 296 ------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ R ++ + + P+ + GKQ R F + D
Sbjct: 198 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 240
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMC 137
Query: 238 LEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ E + V P+ + R Y K+ + + Y G++ + R FN GPR+
Sbjct: 138 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 197
Query: 296 ------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ R ++ + + P+ + GKQ R F + D
Sbjct: 198 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 240
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMC 137
Query: 238 LEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ E + V P+ + R Y K+ + + Y G++ + R FN GPR+
Sbjct: 138 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 197
Query: 296 ------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ R ++ + + P+ + GKQ R F + D
Sbjct: 198 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 240
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 10 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 64
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 65 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMC 124
Query: 238 LEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ E + V P+ + R Y K+ + + Y G++ + R FN GPR+
Sbjct: 125 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 184
Query: 296 ------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ R ++ + + P+ + GKQ R F + D
Sbjct: 185 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 21/223 (9%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D D + +P F + D+ +E
Sbjct: 325 GFIGNHLTERLL-REDHYEVYGLDI----GSDAISRFLNHPHFHFVEGDISIHSEWIEYH 379
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 380 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMC 439
Query: 238 LEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ E + V P+ + R Y K+ + + Y G++ + R FN GPR+
Sbjct: 440 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
Query: 296 ------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ R ++ + + P+ + GKQ R F + D
Sbjct: 500 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 542
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+ + D + L A+P+ Y NP++ + + L ++ + + + ST+EVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTAEVYGMC 137
Query: 238 LEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ E + V P+ + R Y K+ + + Y G++ + R FN GPR+
Sbjct: 138 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 197
Query: 296 ------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ R ++ + + P+ + GKQ R F + D
Sbjct: 198 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 240
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 24/228 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE--VD 182
AG++GSH V KL+D G V+V+DN TG +D + + +L + + + ++
Sbjct: 10 AGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIE 69
Query: 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD-PLEH 240
+ H A + P++ NV G L +L + KF+ +ST+ YG+ ++
Sbjct: 70 AVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDL 129
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR---MCLD 297
+ET NP + Y E K E + Y + + + +I R FN G + +
Sbjct: 130 ITEETM---TNPT---NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGE 183
Query: 298 DGRVVSNFVAQAI-----RRQPMTVYG------DGKQTRSFQYVSDLV 334
D R ++ + + +R+ + ++G DG R + +V DLV
Sbjct: 184 DHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLV 231
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 26/184 (14%)
Query: 129 GSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVH--HFRNPRFELIRHDVVEP-----I 177
GS+L + L+++G EV I +F T R D++ H NP+F L D+ + I
Sbjct: 14 GSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRI 73
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML------GLAKRVGAKFLLTS 229
L EV D++Y+L + +P T + MGTL +L GL K+ +F S
Sbjct: 74 LREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKT--RFYQAS 131
Query: 230 TSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
TSE+YG E PQKET P RS Y K A +T++Y G+ +FN
Sbjct: 132 TSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNH 186
Query: 290 YGPR 293
PR
Sbjct: 187 ESPR 190
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV-------HHFRNPRFELIRHDVVEPI 177
AG++GSH V +LI+ G + +V DN D++ HH +L +E +
Sbjct: 20 AGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKV 79
Query: 178 LLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVY 234
E +D + H A + P++ N++GT+ +L L ++ +KF+ +S++ VY
Sbjct: 80 FKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVY 139
Query: 235 GDPLEHPQ-----KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIA--RIF 287
GD P +E G NP G K E + D + + A R F
Sbjct: 140 GDATRFPNMIPIPEECPLGPTNPYGHT------KYAIENILNDLYNSDKKSWKFAILRYF 193
Query: 288 NTYGPR---MCLDDGRVVSN----FVAQAI--RRQPMTVYGDGKQTRSFQYVSDLVH 335
N G + +D + N ++AQ RR+ + ++GD +R + D +H
Sbjct: 194 NPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIH 250
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +ST+ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSTATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S Y + K E + D + + + R FN G
Sbjct: 129 GDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 23/231 (9%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---- 179
AGFVGS+LV +L++ G ++V V+DN + K N+ H P + + LL
Sbjct: 41 AGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDH---PAVRFSETSITDDALLASLQ 97
Query: 180 -EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM---LGLAKRVGAKFLLTSTSEVYG 235
E D ++HLA ++P+ + N + TL + L KR+ + +
Sbjct: 98 DEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAE 157
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ + V+ S Y K E ++ YH+ + AR N YGP
Sbjct: 158 KTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEI 217
Query: 296 LDDGR-----------VVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
L GR V F+ +A++ P+ + G TR F +V D+ +
Sbjct: 218 LGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVAN 268
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 125 AGFVGSHLVDKLIDR--GDEVIVIDNF-----FTGRKDNLVHHFRNP---RFELIRHDVV 174
AGFVGS+L + +V+V+D F F+ + + + HF+N + E+I D+
Sbjct: 19 AGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADIN 78
Query: 175 EPI------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228
P+ L D ++H A + N +KTN LN+L +A+ AK +
Sbjct: 79 NPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSKKAKVIYA 136
Query: 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S++ VYG+ N +P + Y K + + H V+V + R FN
Sbjct: 137 SSAGVYGNT---KAPNVVGKNESP---ENVYGFSKLCMDEFVLS-HSNDNVQVGL-RYFN 188
Query: 289 TYGPRMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
YGPR + +V A+ + + ++ G+Q R F Y+ D++
Sbjct: 189 VYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQ 237
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL------ 178
G +GSH+ + L++RGD+V+ IDNF TGR+++L H P + + + L
Sbjct: 30 CGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PNLTFVEGSIADHALVNQLIG 86
Query: 179 -LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKFLLTSTSEVYG 235
L+ D + H A YN TN +G N++ AK+ VG +F+ T+ YG
Sbjct: 87 DLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYG 142
Query: 236 -DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
P++ P + + R+ + +++ DY +G++ R+ N GPR
Sbjct: 143 VKPIQQPVRLDH--------PRNPANSSYAISKSANEDYLEYSGLDFVTFRLANVVGPR 193
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S Y + K E + D + + + R FN G
Sbjct: 129 GDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S Y + K E + D + + + R FN G
Sbjct: 129 GDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S Y + K E + D + + + R FN G
Sbjct: 129 GDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S Y + K E + D + + + R FN G
Sbjct: 129 GDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S Y + K E + D + + + R FN G
Sbjct: 129 GDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSVATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S Y + K E + D + + + R FN G
Sbjct: 129 GDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S + + K E + D + + + R FN G
Sbjct: 129 GDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S + + K E + D + + + R FN G
Sbjct: 129 GDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292
GD + P E++ P G +S + + K E + D + + + R FN G
Sbjct: 129 GDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGA 183
Query: 293 RMCLDDGR----VVSN---FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDLV 334
D G + +N ++AQ RR + ++G DG R + +V DL
Sbjct: 184 HPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 38/212 (17%)
Query: 129 GSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVHHFRNPRF-----------ELIRHDV 173
GS+L + L+++G EV I +F TGR + H ++NP+ +L
Sbjct: 37 GSYLAEFLLEKGYEVHGIVRRSSSFNTGR---IEHLYKNPQAHIEGNMKLHYGDLTDSTC 93
Query: 174 VEPILLEVD--QIYHLACPASPVHYKYNPVK-TIKTNVMGTLNMLGLAKRVG----AKFL 226
+ I+ EV +IY+L S V ++ + T + +GTL +L K G KF
Sbjct: 94 LVKIINEVKPTEIYNLGAQ-SHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFY 152
Query: 227 LTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
STSE+YG E PQKET P RS Y K A + +++ + +
Sbjct: 153 QASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGIL 207
Query: 287 FNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVY 318
FN PR +NFV + I R +Y
Sbjct: 208 FNHESPRRG-------ANFVTRKISRSVAKIY 232
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE--VD 182
AG +GS+L++ + +G E++VIDNF TG+++ L +I V + LLE D
Sbjct: 29 AGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP---PVAGLSVIEGSVTDAGLLERAFD 85
Query: 183 QI--YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT-STSEVYGDPLE 239
H+ A+ + + TNV G++N+ A + G K LL T+ YG P
Sbjct: 86 SFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPAT 145
Query: 240 HPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296
P +P + Y K E M + V V R+ N GPR+ +
Sbjct: 146 VPIPID-----SPTAPFTSYGISKTAGEAFLM----MSDVPVVSLRLANVTGPRLAI 193
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 32/238 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--------LVHHFRNPRFELIRHDVVEP 176
AG++GSH V +L++ G +VIDNF + V E D+++
Sbjct: 11 AGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-T 228
L+ + H A + P+ + N+ GT+ +L + K G K L+ +
Sbjct: 71 GALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS 130
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
S++ VYG+P P E + G NP G+ + E E + V + R
Sbjct: 131 SSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE-----EMIRDLCQADKTWNVVLLRY 185
Query: 287 FNTYGPRM--CL-DDGRVVSN----FVAQAI--RRQPMTVYGDGKQTRSFQYVSDLVH 335
FN G C+ +D + + N +V+Q RR+ + V+G+ T V D +H
Sbjct: 186 FNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 32/238 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--------LVHHFRNPRFELIRHDVVEP 176
AG++GSH V +L++ G +VIDNF + V E D+++
Sbjct: 11 AGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-T 228
L+ + H A + P+ + N+ GT+ +L + K G K L+ +
Sbjct: 71 GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS 130
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
S++ VYG+P P E + G NP G+ + E E + V + R
Sbjct: 131 SSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE-----EMIRDLCQADKTWNVVLLRY 185
Query: 287 FNTYGPRM--CL-DDGRVVSN----FVAQAI--RRQPMTVYGDGKQTRSFQYVSDLVH 335
FN G C+ +D + + N +V+Q RR+ + V+G+ T V D +H
Sbjct: 186 FNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 32/238 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--------LVHHFRNPRFELIRHDVVEP 176
AG++GSH V +L++ G +VIDNF + V E D+++
Sbjct: 11 AGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-T 228
L+ + H A + P+ + N+ GT+ +L + K G K L+ +
Sbjct: 71 GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS 130
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
S++ VYG+P P E + G NP G+ + E + + D A + R
Sbjct: 131 SSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE-EMIRDLCQADKTWNA----VLLRY 185
Query: 287 FNTYGPRM--CL-DDGRVVSN----FVAQAI--RRQPMTVYGDGKQTRSFQYVSDLVH 335
FN G C+ +D + + N +V+Q RR+ + V+G+ T V D +H
Sbjct: 186 FNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 126 GFVGSHLVDKLIDRG--------DEVIVIDNFFTGRKDNLVH-HFRNPR-FELIRHDVVE 175
GF GS L L + G D V F R ++L+ H + R FE +R + E
Sbjct: 19 GFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIRDFEKLRSSIAE 78
Query: 176 PILLEVDQIYHLAC-PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEV 233
+ + ++H+A P + Y+ P+KT TNVMGT+++L K+VG K ++ TS+
Sbjct: 79 ---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLLETVKQVGNIKAVVNITSDK 134
Query: 234 YGDPLEHPQKETYWG--NVNPIGERSCYDEGKRTAETLT 270
D +E WG P+G Y K AE +
Sbjct: 135 CYD-----NREWVWGYRENEPMGGYDPYSNSKGCAELVA 168
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 38/201 (18%)
Query: 125 AGFVGSHLVDKLI-DRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEP------ 176
AG++GSH V L+ D V+++D+ T K + V N +L + D +P
Sbjct: 11 AGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRY 70
Query: 177 ILLEV-------------------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML-G 216
LEV D + H+ + +P+K NV+G L +L
Sbjct: 71 AALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQA 130
Query: 217 LAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPI------GERSCYDEGKRTAETLT 270
+ K + +S++ ++G+ P + N PI S Y E K AE +
Sbjct: 131 MLLHKCDKIIFSSSAAIFGN----PTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMI 186
Query: 271 MDYHRGAGVEVRIARIFNTYG 291
D G++ R FN G
Sbjct: 187 RDCAEAYGIKGICLRYFNACG 207
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 10/161 (6%)
Query: 184 IYHLACPASPV--HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE-VYGDPLEH 240
+ HLA + + KYN + + NV N+L A VGA+ +++ S ++ D +
Sbjct: 65 VIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTY 123
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP--RMCLDD 298
P ET N P Y KR + Y + G N +GP ++D
Sbjct: 124 PIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIED 183
Query: 299 GRVVSNFVAQA----IRRQPMTVYGDGKQTRSFQYVSDLVH 335
G V+ + + +TV+G G R F Y DL
Sbjct: 184 GHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQ 224
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 10/161 (6%)
Query: 184 IYHLACPASPV--HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE-VYGDPLEH 240
+ HLA + + KYN + + NV N+L A VGA+ +++ S ++ D +
Sbjct: 66 VIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTY 124
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP--RMCLDD 298
P ET N P Y KR + Y + G N +GP ++D
Sbjct: 125 PIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIED 184
Query: 299 GRVVSNFVAQA----IRRQPMTVYGDGKQTRSFQYVSDLVH 335
G V+ + + +TV+G G R F Y DL
Sbjct: 185 GHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQ 225
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--GAKFLLTSTSEVYGDPLE 239
D++Y+LA + P+ T + + +G L +L + V KF STSE++G E
Sbjct: 77 DEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQE 136
Query: 240 HPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
PQ E P RS Y K +T++Y + +FN P
Sbjct: 137 IPQTEK-----TPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESP 184
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 41/241 (17%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----HFRNPRF---------ELIRH 171
AG++GSH +L+ G +V++ DN +++ + + P F L R
Sbjct: 14 AGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARI 73
Query: 172 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK-RVGAKFLLTST 230
PI + H A + P++ + N+ L++L + + R + + +S+
Sbjct: 74 FDAHPITAAI----HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIA--RIFN 288
+ VYG P P ET+ P+ + Y + K AE + D A R+A R FN
Sbjct: 130 ATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVE-AADPSWRVATLRYFN 183
Query: 289 TYGPR---MCLDDGRVVSN----FVAQAI--RRQPMTVYG------DGKQTRSFQYVSDL 333
G + +D + N +VAQ + + + V+G DG R + +V DL
Sbjct: 184 PVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDL 243
Query: 334 V 334
Sbjct: 244 A 244
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 26/150 (17%)
Query: 184 IYHLAC-PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHP 241
++H+A P + Y PV+T TNVMGT+ +L + VG K ++ TS+ D
Sbjct: 84 VFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYD----- 137
Query: 242 QKETYWG--NVNPIGERSCYDEGKRTAETLTMDY------------HRGAGVEVRIARIF 287
KE WG +G Y K AE +T Y H A VR +
Sbjct: 138 NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVI 197
Query: 288 NTYGPRMCLDDGRVVSNFVAQAIRRQPMTV 317
G LD R+V + + + QP+ +
Sbjct: 198 G--GGDWALD--RIVPDILRAFEQSQPVII 223
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 126 GFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VEPILL 179
G G V K++D + + I++ + ++ + F +PR DV + L
Sbjct: 31 GSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE 90
Query: 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
VD H A +YNP++ IKTN+MG N++ + ++ +++ +P+
Sbjct: 91 GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAANPI 149
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 35/165 (21%)
Query: 200 PVKTIKTNVMGTLNMLGLAKRVGAKFLLT--STSEVYGDP-------------------L 238
V T NV+GTLN+L K G + L T YG P L
Sbjct: 113 AVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTL 172
Query: 239 EHPQKETYWGNVNPIGER-----SCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYG 291
+P++ + + +++ + + +C G R D ++G GV+ +
Sbjct: 173 PYPKQASSFYHLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELR 227
Query: 292 PRMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
R+ D G ++ F QA P+TVYG G QTR + + D V
Sbjct: 228 NRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 272
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAKFLLTSTSEVYGDPL 238
+D I+HLA S K +P K N+ GT N+L AK RV K ++ ST V+G
Sbjct: 63 IDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVFGP-- 118
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
E P+ + ++ R+ Y K AE L Y+ G++VR R
Sbjct: 119 ETPKNKV--PSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 40/190 (21%)
Query: 179 LEVDQIYHL----ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT--STSE 232
E D + H + P S + + V T NV+GTLN+L K G + L T
Sbjct: 99 FEPDSVVHFGEQRSAPYSMID-RSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMG 157
Query: 233 VYGDP-------------------LEHPQKETYWGNVNPIGER-----SCYDEGKRTAET 268
YG P L +P++ + + +++ + + +C G R
Sbjct: 158 EYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRAT-- 215
Query: 269 LTMDYHRGA--GVEVRIARIFNTYGPRMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQT 324
D ++G GV+ + R+ D G ++ F QA P+TVYG G QT
Sbjct: 216 ---DLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQT 272
Query: 325 RSFQYVSDLV 334
R + + D V
Sbjct: 273 RGYLDIRDTV 282
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 40/190 (21%)
Query: 179 LEVDQIYHL----ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV- 233
E D + H + P S + + V T NV+GTLN+L K G + L +
Sbjct: 99 FEPDSVVHFGEQRSAPYSMID-RSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGAMG 157
Query: 234 -YGDP-------------------LEHPQKETYWGNVNPIGER-----SCYDEGKRTAET 268
YG P L +P++ + + +++ + + +C G R
Sbjct: 158 EYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRAT-- 215
Query: 269 LTMDYHRGA--GVEVRIARIFNTYGPRMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQT 324
D ++G GV+ + R+ D G ++ F QA P+TVYG G QT
Sbjct: 216 ---DLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQT 272
Query: 325 RSFQYVSDLV 334
R + + D V
Sbjct: 273 RGYLDIRDTV 282
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 82/225 (36%), Gaps = 35/225 (15%)
Query: 126 GFVGSHLVDKLIDRGDEVIVID-----NFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
G VGS + +L RGD +V+ N R VH F F R
Sbjct: 13 GMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRA---VHDF----FASER---------- 55
Query: 181 VDQIYHLACPASP-VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL 238
+DQ+Y A V P I N+M N++ A + K L +S +Y
Sbjct: 56 IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLA 115
Query: 239 EHPQKET--YWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296
+ P E+ G + P E Y K L Y+R G + R N YGP
Sbjct: 116 KQPMAESELLQGTLEPTNE--PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNF 173
Query: 297 --DDGRVVSNFV-----AQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
+ V+ + A A + + V+G G R F +V D+
Sbjct: 174 HPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMA 218
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAKFLLTSTSEVYGDPL 238
+D I+HLA S K +P K N+ GT N+L AK RV K ++ ST V+G
Sbjct: 63 IDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVFGP-- 118
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
E P+ + ++ R+ + K AE L Y+ G++VR R
Sbjct: 119 ETPKNKV--PSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS++V L D+G +++V+DN G K NLV N + + D + I+
Sbjct: 8 AGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQIMAGEE 65
Query: 180 --EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG-- 235
+V+ I+H +S +++ + N + +L FL S++ YG
Sbjct: 66 FGDVEAIFHEGAXSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGR 123
Query: 236 --DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
D +E + E P+ + Y K + A ++ R FN YGPR
Sbjct: 124 TSDFIESREYE------KPL---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPR 174
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS++V L D+G +++V+DN G K NLV N + + D + I+
Sbjct: 55 AGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQIMAGEE 112
Query: 180 --EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD- 236
+V+ I+H +S +++ + N + +L FL S++ YG
Sbjct: 113 FGDVEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGR 170
Query: 237 PLEHPQKETYWGNVNPIG-ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
+ + Y +N G + +DE R + L A ++ R FN YGPR
Sbjct: 171 TSDFIESREYEKPLNVFGYSKFLFDEYVR--QILPE-----ANSQIVGFRYFNVYGPR 221
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 42/236 (17%)
Query: 129 GSHLVDKLIDRGDEVIVI----DNFFTGRKDNLV---HHFRNPRFELIRHDVVEPI---- 177
GS+L + L+ +G EV + NF T R +++ H+ +L D+ +
Sbjct: 41 GSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRR 100
Query: 178 ---LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR------VGAKFLLT 228
+++ D++Y+LA + P T G L +L + K+
Sbjct: 101 WIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQA 160
Query: 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
+SE++G PQ ET P RS Y K A T++Y G+ +FN
Sbjct: 161 GSSEMFGS-TPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFN 214
Query: 289 TYGPRMCLDDGRVVSNFVAQAIRR---------QPMTVYGDGKQTRSFQYVSDLVH 335
PR NFV + I R Q G+ + +R + + D V
Sbjct: 215 HESPRRG-------ENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 263
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 27/167 (16%)
Query: 170 RHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK--FLL 227
+ + +E LL+ D I HLA P H K + NV ++L + R K LL
Sbjct: 36 KEEELESALLKADFIVHLAGVNRPEHDKEFSLG----NVSYLDHVLDILTRNTKKPAILL 91
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+S+ + D NP G E K E L +Y G V I R
Sbjct: 92 SSSIQATQD--------------NPYG------ESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 288 NTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
N +G + V++ F + R + + V D + YV D+V
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIV 177
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 27/167 (16%)
Query: 170 RHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK--FLL 227
+ + +E LL+ D I HLA P H K + NV ++L + R K LL
Sbjct: 36 KEEELESALLKADFIVHLAGVNRPEHDKEFSLG----NVSYLDHVLDILTRNTKKPAILL 91
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+S+ + D NP G E K E L +Y G V I R
Sbjct: 92 SSSIQATQD--------------NPYG------ESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 288 NTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
N +G + V++ F + R + + V D + YV D+V
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIV 177
>pdb|3UU9|A Chain A, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
pdb|3UU9|B Chain B, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
Length = 520
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 238 LEHPQKETYWGNVNPIGERSCYD 260
L+HP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3RKH|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
pdb|3RKH|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
Length = 520
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 238 LEHPQKETYWGNVNPIGERSCYD 260
L+HP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3SCE|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3SCE|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3S7W|A Chain A, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3S7W|B Chain B, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3OWM|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
pdb|3OWM|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
Length = 519
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 238 LEHPQKETYWGNVNPIGERSCYD 260
L+HP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3F29|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|3F29|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|2ZO5|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|2ZO5|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|3D1I|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3D1I|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3GM6|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3GM6|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3FO3|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3FO3|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3MMO|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3MMO|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3LG1|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LG1|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LGQ|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
pdb|3LGQ|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
Length = 525
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 238 LEHPQKETYWGNVNPIGERSCYD 260
L+HP+ ET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
>pdb|2OT4|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
pdb|2OT4|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
Length = 525
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 238 LEHPQKETYWGNVNPIGERSCYD 260
L+HP+ ET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,589,262
Number of Sequences: 62578
Number of extensions: 382918
Number of successful extensions: 892
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 82
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)