BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019794
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 183/222 (82%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
M ++DGRVVSNF+ QA++ +P+TVYG G QTR+FQYVSDLV+
Sbjct: 266 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVN 307
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 183/222 (82%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
M ++DGRVVSNF+ QA++ +P+TVYG G QTR+FQYVSDLV+
Sbjct: 266 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVN 307
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 183/222 (82%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
M ++DGRVVSNF+ QA++ +P+TVYG G QTR+FQYVSDLV+
Sbjct: 266 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVN 307
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 332 bits (851), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 183/222 (82%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
M ++DGRVVSNF+ QA++ +P+TVYG G QTR+FQYVSDLV+
Sbjct: 266 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVN 307
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 330 bits (845), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 153/222 (68%), Positives = 183/222 (82%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 87 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 146
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 147 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 206
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 207 YGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 266
Query: 294 MCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
M ++DGRVVSNF+ QA++ + +TVYG G+QTR+FQYVSDLV+
Sbjct: 267 MHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVN 308
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 326 bits (836), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/236 (66%), Positives = 185/236 (78%)
Query: 100 SFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH 159
SF K V + R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H
Sbjct: 70 SFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH 129
Query: 160 HFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK 219
+ FELI HDVVEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAK
Sbjct: 130 WIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK 189
Query: 220 RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGV 279
RVGA+ LL STSEVYGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GV
Sbjct: 190 RVGARLLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGV 249
Query: 280 EVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
EVR+ARIFNT+G RM ++DGRVVSNF+ QA++ + +TVYG G QTR+FQYVSDLV+
Sbjct: 250 EVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVN 305
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 19/224 (8%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGGAGF+GSH+VDKLI+ +VI++DN TG K+N+ NP+ E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKFLLTST 230
E V+ + H A + + NPV NV+GT+N+L + ++ + +S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYG+P P E + PI S Y K E Y+R G+E I R N Y
Sbjct: 117 GAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 291 GPRMC-LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDL 333
G R + V+S F+ + ++ Q ++GDG QTR F YV D+
Sbjct: 172 GERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDV 215
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 25/232 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGD--------EVIVIDNF-FTGRKDNLVHHFRNPRFE 167
++I+VTGGAGF+GSH V LI GD +V V+D + G NL +PRF
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 168 LIRHDVVEPILLEVDQIYH--LACPASPVHYKYNPVKT---IKTNVMGTLNMLGLAKR-- 220
+R D+ + L+E H +A A+ H + V + + +N++GT +L A R
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHH 119
Query: 221 VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVE 280
+G +FL ST EVYG W +P+ S Y K ++ L + YH+ G++
Sbjct: 120 IG-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMD 173
Query: 281 VRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
V + R N YGPR + +++ FV + + + VYGDG+ R + +VSD
Sbjct: 174 VVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSD 223
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 17/226 (7%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDE----VIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV 173
++VTG AGF+GS V L+ G V +D + G DNL +PR+ R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 174 VEP----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+ ++ DQ+ HLA + + ++TNV GT +L A R G A F+
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST EVYG LEH W P+ S Y K + + L + +H G++VR+ R N
Sbjct: 125 STDEVYGS-LEHGS----WTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSN 179
Query: 289 TYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
YGPR + +++ F+ + + +YGDG R + +V D V
Sbjct: 180 NYGPRQFPE--KLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHV 223
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNF-----FTGRKDNLVHHFRNPRFELIR 170
++I+VTG AGF+GSHL ++L+ D+ VI ID+F F+ + NL + RF I+
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 171 HDVV----EPILLEVDQIYHLAC-PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK- 224
+++ +L VD I+HLA P + + N+ +L + +
Sbjct: 61 ENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQT 120
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
F+ STS VYG+ + T ++P Y K T E L Y + G+ + I
Sbjct: 121 FVFASTSSVYGEKQGKVSENTSLSPLSP------YGVTKLTGEKLCHVYKQSFGIPIVIL 174
Query: 285 RIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
R F YGPR D + Q ++++P+T++GDG+Q+R F Y+SD V
Sbjct: 175 RFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCV 222
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+R +VTG AGF+GS LVD+L+ G V+ +DNF TGR NL H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 177 ILLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
L + + ++HLA +P NV+GT+ + A++ G + ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 231 S--EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +YG P E+P ET P S Y GK E + G++ N
Sbjct: 121 SGGSIYGTPPEYPTPETA-----PTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPAN 175
Query: 289 TYGPRM-CLDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
YGPR + VV+ F + +P V+GDG T
Sbjct: 176 VYGPRQDPHGEAGVVAIFAQALLSGKPTRVFGDGTNT 212
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 109/236 (46%), Gaps = 28/236 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-FTGRKDNL--VHHFRNPRFELIRHDV 173
+RI+VTGGAGF+GS LV L+ EV+ +D + G +L V RN RF +R D+
Sbjct: 1 MRILVTGGAGFIGSALVRYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRF--LRADI 58
Query: 174 VEPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--- 223
+ + + + D + HLA + ++TNV GT ML A++ +
Sbjct: 59 CDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLS 118
Query: 224 -------KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG 276
K L ST EVYG + Q E V+P S Y K ++ + R
Sbjct: 119 QNRKAFFKMLHVSTDEVYGSLGDRGQFE----EVSPYDPSSPYSASKAASDHFATAWQRT 174
Query: 277 AGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
G+ V I+ N YGP + +++ + A+ R+P+ VYG G R + YV D
Sbjct: 175 YGLPVVISNCSNNYGPFHFPE--KLIPLMILNALDRKPLPVYGTGSNIRDWLYVDD 228
>sp|Q54WS6|TGDS_DICDI dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds
PE=3 SV=1
Length = 434
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 19/234 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
+I++TGGAGF+GSHL L + ++IV+D + +NL + F+ + +++
Sbjct: 11 KILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNIL 70
Query: 175 EPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFL 226
+ LLE +D + HLA + +K + N++GT +L K KF+
Sbjct: 71 DSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFI 130
Query: 227 LTSTSEVYGDPLEHPQKETYWGNVNPIGERSC------YDEGKRTAETLTMDYHRGAGVE 280
ST EVYG L + E+S Y K AE L Y++ +
Sbjct: 131 YVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLP 190
Query: 281 VRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
V I R N YGP+ + +++ F+ + + T++G GK TR++ Y+ D+V
Sbjct: 191 VIITRANNIYGPKQYPE--KIIPKFINLLLNNKKCTIHGTGKNTRNYLYIDDIV 242
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
I++TG AGF+ SH+ ++LI + ++V+D + NL F +P F+ ++ D+
Sbjct: 11 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKGDIAS 70
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
L+ +D I H A + N + K N+ GT +L K G +F+
Sbjct: 71 DDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 130
Query: 227 LTSTSEVYGDPLEHPQKETYWGN----VNPIGERSCYDEGKRTAETLTMDYHRGAGVEVR 282
ST EVYG+ E + + NP Y K AE L M Y R G+ V
Sbjct: 131 HVSTDEVYGETDEDAAVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVI 184
Query: 283 IARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R N YGP + +++ F+ A+ +P+ ++GDG RS+ Y D+
Sbjct: 185 TTRGNNVYGPNQFPE--KMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAE 235
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 14/218 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+R +VTG AGF+GS LVD+L+ G V+ +D+ +GR +NL + +FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 177 IL------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
L + + I+HLA S +P NV+GT+ + A+ G + ++ ++
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 231 S--EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S VYG P +P E P+ S Y GK E Y ++ N
Sbjct: 121 SGGSVYGTPPAYPTSEDM-----PVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPAN 175
Query: 289 TYGPRMCL-DDGRVVSNFVAQAIRRQPMTVYGDGKQTR 325
YGPR + VV+ F + + ++GDG TR
Sbjct: 176 VYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTR 213
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
I++TG AGF+ SH+ ++L+ + ++V+D + NL +P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS 68
Query: 176 PILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
L+ E+D I H A + N + K N+ GT +L K G +F+
Sbjct: 69 ADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 227 LTSTSEVYGDPLEHPQKETYWGN----VNPIGERSCYDEGKRTAETLTMDYHRGAGVEVR 282
ST EVYG+ E + + NP Y K AE L M Y R G+ V
Sbjct: 129 HVSTDEVYGETDEDASVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVI 182
Query: 283 IARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R N YGP + +++ F+ A+ +P+ ++GDG RS+ Y D+
Sbjct: 183 TTRGNNVYGPNQFPE--KLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAE 233
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 20/231 (8%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
I++TG AGF+ SH+ ++LI + ++V+D + NL +P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIAS 68
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
L+ +D I H A + N + K N+ GT +L K G +F+
Sbjct: 69 ADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 227 LTSTSEVYGDPLEHPQKETYWGN--VNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
ST EVYG+ E + GN + + + Y K AE L M Y R G+ V
Sbjct: 129 HVSTDEVYGETDE----DALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
Query: 285 RIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
R N YGP + +++ F+ A+R Q + ++GDG RS+ Y D+
Sbjct: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAE 233
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 26/238 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
+ I+VTGG+GF+GS L+ +I+ D VI ID + + L NPR+ + D+
Sbjct: 2 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDIC 61
Query: 175 EPILLEV-------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK-------- 219
+ ++E D + HLA + ++TN++GT +L +AK
Sbjct: 62 DLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDE 121
Query: 220 --RVGAKFLLTSTSEVYGD-PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG 276
+ +F ST EVYGD L P + +P S Y K + L +HR
Sbjct: 122 AKKTTFRFHHISTDEVYGDLSLSEPA----FTEQSPYHPSSPYSASKAASNHLVQAWHRT 177
Query: 277 AGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
G+ V I N YG + +++ ++ A+ +P+ +YGDG+Q R + +V D V
Sbjct: 178 YGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHV 233
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 24/233 (10%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEP 176
I+VTGGAGF+GS +V +I D V+ +D + G ++L NPR+ + D+ +
Sbjct: 9 ILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDR 68
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA----------K 219
L+ D + HLA + + + I+TN++GT ++L A K
Sbjct: 69 AELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEK 128
Query: 220 RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGV 279
R +F ST EVYGD H + + P S Y K A+ L + R +
Sbjct: 129 REAFRFHHISTDEVYGDL--HGTDDLF-TETTPYAPSSPYSASKAAADHLVRAWQRTYRL 185
Query: 280 EVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
++ N YGPR + +++ + A+ +P+ VYGDG Q R + +V D
Sbjct: 186 PSIVSNCSNNYGPRQFPE--KLIPLMILNALSGKPLPVYGDGAQIRDWLFVED 236
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNF-------FTGRKDNLVHHFRNPRFELI 169
I+VTG AGF+G HL L+D ++ VI IDN +++ ++ ++ N F +
Sbjct: 6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKL 65
Query: 170 ----RHDVVEPIL-LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A 223
D+VE + E+D I HL A + NP IK+N MGTLN+ A+R
Sbjct: 66 DFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIE 125
Query: 224 KFLLTSTSEVYGDPLEHPQKETYWGNVN-PIGERSCYDEGKRTAETLTMDYHRGAGVEVR 282
K + S+S VYG + P E V+ PI S Y KR+ E + YH G+++
Sbjct: 126 KVVYASSSSVYGGNRKIPFSED--DRVDKPI---SLYASTKRSNELMAHVYHHLYGIKMI 180
Query: 283 IARIFNTYG----PRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
R F YG P M F + + + VY G R F Y+SD+V
Sbjct: 181 GLRFFTVYGEYGRPDMA------YFKFAKNILLGKEIEVYNYGNMERDFTYISDVV 230
>sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3
SV=1
Length = 332
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 21/233 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
+ I+V GGAG++GSH+VD+L+++G E V+V+D+ TG + + + +L D +
Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAVHPDAIFYQGDLSDQDFMR 60
Query: 176 PILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TSTS 231
+ E VD + H A + P+K N G + +L + G K+++ +ST+
Sbjct: 61 KVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTA 120
Query: 232 EVYGDPLEHPQKETYWGN-VNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
YG P E P ET N +NP Y E K ET+ + G++ R FN
Sbjct: 121 ATYGIPEEIPILETTPQNPINP------YGESKLMMETIMKWSDQAYGIKYVPLRYFNVA 174
Query: 291 GPRMCLDDGRVVSNF--------VAQAIRRQPMTVYGDGKQTRSFQYVSDLVH 335
G + + R S VAQ +R + M ++GD T V D VH
Sbjct: 175 GANLMVRLVRTRSETHLLPIILQVAQGVREKIM-IFGDDYNTPDGTNVRDYVH 226
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 24/231 (10%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
+VTGGAGF+G + V + + RG V+ +D + G + L N ++ D+ + L
Sbjct: 5 LVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 179 L-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGL----------AKRV 221
+ + D + + A + P I+TNV+GTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 222 GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
+FL ST EVYG L K T P S Y K ++ L +H G+ V
Sbjct: 125 AFRFLHVSTDEVYG-TLGETGKFT---ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 282 RIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
N YGP + +++ +A+A+ +P+ VYGDGKQ R + +VSD
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSD 229
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
+I++TGGAGF+GS LV +I+ D V+V+D + G +L ++ RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA---------- 218
L + D + HLA + P I+TN++GT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
K+ +F ST EVYGD + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGDL---HSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ I N YGP + +++ + A+ + + VYG+G+Q R + YV D
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVED 231
>sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021)
GN=lspL PE=3 SV=2
Length = 341
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 23/233 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-------FTGRKDNLVHHFRNPRFELI 169
+R ++TG AGF+G H+ +LID G V+ D R+ ++ R+ F+ +
Sbjct: 1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQ--RSNGFKAV 58
Query: 170 RHDVVE-------PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222
+ + L E + I HLA A + NP + N++G+ NML LAK +
Sbjct: 59 TAMLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIA 118
Query: 223 AK-FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
K +L STS +YG + P E + P+ + Y K++ E + Y V
Sbjct: 119 PKHLMLASTSSIYGANEKIPFAEADRAD-EPM---TLYAATKKSMELMAHSYAHLYKVPT 174
Query: 282 RIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
R F YGP D + FV +P+ +YG+G+ +R F Y+ DLV
Sbjct: 175 TSFRFFTVYGPWGRPD--MALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLV 225
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
+I+VTGGAGF+GS +V +I + D V+ +D + G ++L NPR+ + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICD 62
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA---------- 218
L+ D + HLA + + + I+TN++GT N+L A
Sbjct: 63 RAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSE 122
Query: 219 KRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
K +F ST EVYGD + + P S Y K +++ L + R G
Sbjct: 123 KHEAFRFHHISTDEVYGDL---SGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ + N YGP + +++ + A+ +P+ VYGDG Q R + +V D
Sbjct: 180 LPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVED 231
>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3
SV=1
Length = 672
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 21/246 (8%)
Query: 103 AKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHF 161
AK G + + RRR R+++ G GF+G+HL ++L+ D E+ +D D +
Sbjct: 308 AKLGNLASRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFL 363
Query: 162 RNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML 215
+PRF + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 364 GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIV 423
Query: 216 GLAKRVGAKFLLTSTSEVYG--DPLEHPQKETYWGNVNPIG-ERSCYDEGKRTAETLTMD 272
R + + STSEVYG D E ++T V PI +R Y K+ + +
Sbjct: 424 RDCVRYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWA 482
Query: 273 YHRGAGVEVRIARIFNTYGPRM-CLDDGRV-----VSNFVAQAIRRQPMTVYGDGKQTRS 326
Y G+ + R FN GPR+ LD R+ ++ + + P+ + G Q R
Sbjct: 483 YGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRC 542
Query: 327 FQYVSD 332
F + D
Sbjct: 543 FTDIHD 548
>sp|Q8Z540|ARNA_SALTI Bifunctional polymyxin resistance protein ArnA OS=Salmonella typhi
GN=arnA PE=3 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA R P G+RR+R+++ G GF+G+HL ++L+D + EV +D L+H
Sbjct: 301 GACLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B5BCP6|ARNA_SALPK Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA R P G+RR+R+++ G GF+G+HL ++L+D + EV +D L+H
Sbjct: 301 GACLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|Q5PNA6|ARNA_SALPA Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=arnA PE=3
SV=1
Length = 660
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA R P G+RR+R+++ G GF+G+HL ++L+D + EV +D L+H
Sbjct: 301 GACLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B5FNT9|ARNA_SALDC Bifunctional polymyxin resistance protein ArnA OS=Salmonella dublin
(strain CT_02021853) GN=arnA PE=3 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|O52325|ARNA_SALTY Bifunctional polymyxin resistance protein ArnA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=arnA PE=2 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B5R272|ARNA_SALEP Bifunctional polymyxin resistance protein ArnA OS=Salmonella
enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|P0C0R6|ARNA_SALCH Bifunctional polymyxin resistance protein ArnA OS=Salmonella
choleraesuis (strain SC-B67) GN=arnA PE=3 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|C0Q069|ARNA_SALPC Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1
Length = 660
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B5RCC4|ARNA_SALG2 Bifunctional polymyxin resistance protein ArnA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3
SV=1
Length = 660
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILSLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B4TPI2|ARNA_SALSV Bifunctional polymyxin resistance protein ArnA OS=Salmonella
schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1
Length = 660
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B4SYX1|ARNA_SALNS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
newport (strain SL254) GN=arnA PE=3 SV=1
Length = 660
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B4TBG6|ARNA_SALHS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
heidelberg (strain SL476) GN=arnA PE=3 SV=1
Length = 660
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|B5EZH8|ARNA_SALA4 Bifunctional polymyxin resistance protein ArnA OS=Salmonella agona
(strain SL483) GN=arnA PE=3 SV=1
Length = 660
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 14/224 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVH---HFRNPRFELIR 170
+R++VTGGAGF+G++ V + D V V+D + GR+++L R + ++
Sbjct: 1 MRLLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESLADVEDAIRLVQGDITD 60
Query: 171 HDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
++V ++ E D + H A + + NP + TNV+GT +L +R G + ST
Sbjct: 61 AELVSQLVAESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHGVRLHHIST 120
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
EVYGD LE + + P S Y K A+ L + R GV I+ N Y
Sbjct: 121 DEVYGD-LELDDRARF-TESTPYNPSSPYSATKAGADMLVRAWVRSYGVRATISNCSNNY 178
Query: 291 GPRMCLDD--GRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
GP ++ R ++N + R+P +YG G R + +V D
Sbjct: 179 GPYQHVEKFIPRQITNVLTG---RRP-KLYGAGANVRDWIHVDD 218
>sp|A9N5B2|ARNA_SALPB Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3
SV=1
Length = 660
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270
+ + + + STSEVYG + + G VN R Y K+ + +
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQT 324
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q
Sbjct: 475 WAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQK 534
Query: 325 RSFQYVSD 332
R F + D
Sbjct: 535 RCFTDIRD 542
>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=arnA PE=3 SV=1
Length = 673
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 21/246 (8%)
Query: 103 AKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHF 161
A+ G + + RRR R+++ G GF+G+HL ++L+ D E+ +D D +
Sbjct: 309 ARLGNLASRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFL 364
Query: 162 RNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML 215
+PRF + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 365 GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIV 424
Query: 216 GLAKRVGAKFLLTSTSEVYG--DPLEHPQKETYWGNVNPIG-ERSCYDEGKRTAETLTMD 272
R + + STSEVYG D E ++T V PI +R Y K+ + +
Sbjct: 425 RDCVRYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWA 483
Query: 273 YHRGAGVEVRIARIFNTYGPRM-CLDDGRV-----VSNFVAQAIRRQPMTVYGDGKQTRS 326
Y G+ + R FN GPR+ LD R+ ++ + + P+ + G Q R
Sbjct: 484 YGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRC 543
Query: 327 FQYVSD 332
F + D
Sbjct: 544 FTDIHD 549
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
+I+VTGGAGF+GS +V +I + D V+ +D + G ++L NPR+ + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICD 62
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV------- 221
L+ D + HLA + + + I+TN++GT N+L A+
Sbjct: 63 RAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSE 122
Query: 222 ---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
+F ST EVYGD + + P S Y K +++ L + R G
Sbjct: 123 QHEAFRFHHISTDEVYGD---LGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
+ + N YGP + +++ + A+ +P+ VYGDG Q R + +V D
Sbjct: 180 LPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVED 231
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 24/231 (10%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
+VTG AGF+G + V + + RG V+ +D + G + L N ++ D+ + L
Sbjct: 5 LVTGRAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 179 L-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGL----------AKRV 221
+ + D + + A + P I+TNV+GTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 222 GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
+FL ST EVYG L K T P S Y K ++ L +H G+ V
Sbjct: 125 AFRFLHVSTDEVYG-TLGETGKFT---ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 282 RIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
N YGP + +++ +A+A+ +P+ VYGDGKQ R + +VSD
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSD 229
>sp|A8GDR7|ARNA_SERP5 Bifunctional polymyxin resistance protein ArnA OS=Serratia
proteamaculans (strain 568) GN=arnA PE=3 SV=1
Length = 660
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 23/241 (9%)
Query: 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLI--DRGDEVIVIDNFFTGRKDNLVHHFRNPRF 166
P + +RR R+++ G GF+G+HL ++L+ DR D I G D + NPRF
Sbjct: 308 PNAVMKRRTRVLILGVNGFIGNHLTERLLRDDRYD----IYGLDIG-SDAISRFLGNPRF 362
Query: 167 ELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR 220
+ D+ +E + + D I L A+P+ Y NP++ + + L ++ +
Sbjct: 363 HFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVK 422
Query: 221 VGAKFLLTSTSEVYG--DPLEHPQKETYWGNVNPIG-ERSCYDEGKRTAETLTMDYHRGA 277
+ + STSEVYG D E + + V PI +R Y K+ + + Y
Sbjct: 423 YNKRIIFPSTSEVYGMCDDKEFDEDHSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKE 481
Query: 278 GVEVRIARIFNTYGPRM-CLDDGRV-----VSNFVAQAIRRQPMTVYGDGKQTRSFQYVS 331
G++ + R FN GPR+ LD R+ ++ + + P+ + G Q R F ++
Sbjct: 482 GLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLMDGGAQKRCFTDIN 541
Query: 332 D 332
D
Sbjct: 542 D 542
>sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2
Length = 338
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 29/246 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELI------ 169
+++++TGG GF+GS+L + +G ++IV DN G DNL FE +
Sbjct: 1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 170 RHDVVEPILLEV-DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
++DV I + D +HLA + NP + NV GTLN+L ++ + +
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120
Query: 227 LTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE------------GKRTAETLTMDYH 274
+ST++VYGD ++ ET + + + YDE K A+ +DY
Sbjct: 121 YSSTNKVYGDLEQYKYNETE-TRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 275 RGAGVEVRIARIFNTYGPR-MCLDDGRVVSNFVAQAIR-----RQPMTVYGDGKQTRSFQ 328
R G+ + R + YG R D V F +A+ +P T+ G+GKQ R
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 239
Query: 329 YVSDLV 334
+ D++
Sbjct: 240 HAEDMI 245
>sp|A4WAM3|ARNA_ENT38 Bifunctional polymyxin resistance protein ArnA OS=Enterobacter sp.
(strain 638) GN=arnA PE=3 SV=1
Length = 660
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 21/247 (8%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHH 160
GA PV +RR R+++ G GF+G+HL ++L+ D EV +D D +
Sbjct: 301 GAIISSQPVSAIKRRTRVLILGVNGFIGNHLTERLLQDDNFEVYGLDI----GSDAISRF 356
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
N RF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 357 IGNSRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN--VNPIG-ERSCYDEGKRTAETLTM 271
+ + + + STSEVYG + E + N V PI +R Y K+ + +
Sbjct: 417 IRDCVKYQKRIIFPSTSEVYGMCSDKVFDEDH-SNLIVGPINKQRWIYSVSKQLLDRVIW 475
Query: 272 DYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTR 325
Y G+ + R FN GPR+ + R ++ + + P+ + G+Q R
Sbjct: 476 AYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKR 535
Query: 326 SFQYVSD 332
F +SD
Sbjct: 536 CFTDISD 542
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 18/233 (7%)
Query: 113 GRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIV-IDNF-FTGRKDNLVHHFRNPRFELI 169
G R++VTGGAGF+ SH++ L+ D D +IV +D + NL ++ I
Sbjct: 14 GSFAKRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFI 73
Query: 170 RHDVVEP----ILLEVDQIYHLACPASPVHYKYNPVKTIK---TNVMGTLNMLGLAKRVG 222
+ D+ + +L EV++I + A+ H + V+ + NV GT ++ A G
Sbjct: 74 QGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAG 133
Query: 223 A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
KF+ ST EVYG L+ E+ +P + Y K AE Y V
Sbjct: 134 VEKFIYVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPV 188
Query: 282 RIARIFNTYGPRMCLDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSDLV 334
I R N YGP + +V+ F++ + ++G G Q R+F Y +D+V
Sbjct: 189 VITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVV 239
>sp|A6TF98|ARNA_KLEP7 Bifunctional polymyxin resistance protein ArnA OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=arnA PE=3 SV=1
Length = 661
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 19/246 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHH 160
GA PV +RR R+++ G GF+G+HL ++L+ D E+ +D G D +
Sbjct: 301 GAVISSKPVVAIKRRTRVLILGVNGFIGNHLTERLLQDDNYEIYGLD---IG-SDAISRF 356
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 357 LDCPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWG-NVNPIG-ERSCYDEGKRTAETLTMD 272
+ + + + STSEVYG + E V PI +R Y K+ + +
Sbjct: 417 IRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDSSNLVVGPINKQRWIYSVSKQLLDRVIWA 476
Query: 273 YHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRS 326
Y G++ + R FN GPR+ + R ++ + + P+ + GKQ R
Sbjct: 477 YGDKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRC 536
Query: 327 FQYVSD 332
F +SD
Sbjct: 537 FTDISD 542
>sp|B4ETL7|ARNA_PROMH Bifunctional polymyxin resistance protein ArnA OS=Proteus mirabilis
(strain HI4320) GN=arnA PE=3 SV=1
Length = 660
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 19/234 (8%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+RR R+++ G GF+G+HL ++L+ G+ I + + + + NPRF I DV
Sbjct: 313 KRRQRVLILGVNGFIGNHLTERLLKDGNYDIYGMDIGSSAIERFIG---NPRFHFIEGDV 369
Query: 174 ------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227
+E + + D I L A+P+ Y NP++ + + L ++ + + +
Sbjct: 370 SIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIF 429
Query: 228 TSTSEVYG--DPLEHPQKETYWGNVNPIG-ERSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
STSEVYG D E + + V PI +R Y K+ + + Y G++ +
Sbjct: 430 PSTSEVYGMCDDKEFDEDNSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLF 488
Query: 285 RIFNTYGPRMC------LDDGRVVSNFVAQAIRRQPMTVYGDGKQTRSFQYVSD 332
R FN GPR+ + R ++ + + P+ + G+Q R F ++D
Sbjct: 489 RPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDIND 542
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,214,595
Number of Sequences: 539616
Number of extensions: 5844340
Number of successful extensions: 13283
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 12395
Number of HSP's gapped (non-prelim): 584
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)