BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019795
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 353 bits (907), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 178/349 (51%), Positives = 225/349 (64%), Gaps = 24/349 (6%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHN------SVPEAVDRVKDLAGPELAK 58
+ +LVTGGAG+IG+H L+LL+ G+ V+IDN HN S+PE++ RV++L G +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG----R 58
Query: 59 KLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQA 118
+EF D+ ++ L +LF F AVIHF LKAV ESVQ P Y+ NL GTI L +
Sbjct: 59 SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 119 MAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEW 177
M + K LVFSSSAT+YG P+ +P E P G NPYG++K + EE+ D+ +AD W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 178 RIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAV 237
++LLRYFNP GAH SG +GEDP+GIPNNLMPY+ QVA+GR LNV+G DY T+DG+ V
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 238 RDYIHVMDLAD-------------GCIAYNLGNGKGISVLEMVAAFEKASGKKIPIKFCP 284
RDYIHV+DLA GC YNLG G G SVL+MV A EKASGKKIP K
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 285 RRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGYQTK 333
RR GD A YA A +ELGW G++ MC W W K NP G+ T+
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQ 347
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 352 bits (904), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/349 (50%), Positives = 225/349 (64%), Gaps = 24/349 (6%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHN------SVPEAVDRVKDLAGPELAK 58
+ +LVTGGAG+IG+H L+LL+ G+ V+IDN HN S+PE++ RV++L G +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG----R 58
Query: 59 KLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQA 118
+EF D+ ++ L +LF F AVIHF LKA+ ESVQ P Y+ NL GTI L +
Sbjct: 59 SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 119 MAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEW 177
M + K LVFSSSAT+YG P+ +P E P G NPYG++K + EE+ D+ +AD W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 178 RIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAV 237
++LLRYFNP GAH SG +GEDP+GIPNNLMPY+ QVA+GR LNV+G DY T+DG+ V
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 238 RDYIHVMDLAD-------------GCIAYNLGNGKGISVLEMVAAFEKASGKKIPIKFCP 284
RDYIHV+DLA GC YNLG G G SVL+MV A EKASGKKIP K
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 285 RRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGYQTK 333
RR GD A YA A +ELGW G++ MC W W K NP G+ T+
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQ 347
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 178/349 (51%), Positives = 224/349 (64%), Gaps = 24/349 (6%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHN------SVPEAVDRVKDLAGPELAK 58
+ +LVTGGAG+IG+H L+LL+ G+ V+IDN HN S+PE++ RV++L G +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG----R 58
Query: 59 KLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQA 118
+EF D+ ++ L +LF F AVIHF LKAV ESVQ P Y+ NL GTI L +
Sbjct: 59 SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 119 MAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEW 177
M + K LVFSSSAT+YG P+ +P E P G NPYG++K + EE+ D+ +AD W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 178 RIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAV 237
+LLRYFNP GAH SG +GEDP+GIPNNLMPY+ QVA+GR LNV+G DY T+DG+ V
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 238 RDYIHVMDLAD-------------GCIAYNLGNGKGISVLEMVAAFEKASGKKIPIKFCP 284
RDYIHV+DLA GC YNLG G G SVL+MV A EKASGKKIP K
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 285 RRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGYQTK 333
RR GD A YA A +ELGW G++ MC W W K NP G+ T+
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQ 347
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 347 bits (890), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 225/343 (65%), Gaps = 17/343 (4%)
Query: 1 MASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKL 60
M+++ ILVTGGAG+IG+H A++LL G+ VV+ DNL NS EA+ R++ + G K
Sbjct: 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITG----KTP 57
Query: 61 EFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMA 120
FH D+ ++ L ++F + A IHF ALKAV ESV P Y+ NNL ++L + M
Sbjct: 58 AFHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMR 117
Query: 121 KYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRII 180
+ K++VFSSSAT+YG PE+ P E FP A NPYG+TK E+I DV+ ADP WR+
Sbjct: 118 ERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVA 177
Query: 181 LLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDY 240
LRYFNPVGAHESG +GEDP GIPNNLMPY+ QVAVG+ +L V+G DYPT DG+ VRDY
Sbjct: 178 TLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDY 237
Query: 241 IHVMDLADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRV 287
IHV+DLA G IA NLG G+G SVLE+V AFEKASG+ +P + RR
Sbjct: 238 IHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRP 297
Query: 288 GDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
GD YA A + +GWK + +E MCA W W +NNP G+
Sbjct: 298 GDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPRGF 340
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/338 (50%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSSSAT+YG KIP VE FP G +PYG++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/338 (50%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSSSAT+YG KIP VE FP G +PYG++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 338 bits (866), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 170/338 (50%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSSSAT+YG KIP VE FP G +PYG++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 CWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 337 bits (864), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSS+AT+YG KIP VE FP G +PYG++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 337 bits (863), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSSSAT+YG KIP VE FP G +P+G++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 337 bits (863), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSS+AT+YG KIP VE FP G +PYG++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 337 bits (863), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSS+AT+YG KIP VE FP G +PYG++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 215/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSS AT+YG KIP VE FP G +PYG++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/338 (49%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSS+AT+YG KIP VE FP G +P+G++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/338 (49%), Positives = 216/338 (63%), Gaps = 18/338 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTGG+G+IG+H +QLLQ G V+++DNL NS + ++ L G K F GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG----KHPTFVEGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+RN+ + ++ + VIHF LKAV ESVQ P Y+DNN+ GT+ L AM N K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+FSS+AT+YG KIP VE FP G +P+G++K E+I D+QKA P+W I LLRYF
Sbjct: 119 FIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
NPVGAH SG +GEDP+GIPNNLMPYI QVAVGR L ++G DYPT+DG+ VRDYIHVMD
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
LADG + YNLG G G SVL++V AF KA GK + F PRR GD A
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 293 VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGY 330
+A KA +EL W+ +++M W+W +P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 319 bits (817), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/354 (45%), Positives = 220/354 (62%), Gaps = 26/354 (7%)
Query: 2 ASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLE 61
++ K +LVTGGAG+IG+H ++L++ G+ V+ DNL NS ++V R++ L +
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT----KHHIP 64
Query: 62 FHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAK 121
F+ DL ++ L+K+F K ++VIHF LKAV ES Q P RY+ NN++GT+ L + M +
Sbjct: 65 FYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQ 124
Query: 122 YNCKKLVFSSSATIYGQ----PEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPE- 176
YN K VFSSSAT+YG P IP E+ P G NPYG TK E I D+ +D +
Sbjct: 125 YNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKS 184
Query: 177 WRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSA 236
W+ +LRYFNP+GAH SG +GEDP GIPNNL+PY+ QVAVGR +L ++G DY ++DG+
Sbjct: 185 WKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTP 244
Query: 237 VRDYIHVMDLADG-----------------CIAYNLGNGKGISVLEMVAAFEKASGKKIP 279
+RDYIHV+DLA G C +NLG+GKG +V E+ AF KASG +P
Sbjct: 245 IRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLP 304
Query: 280 IKFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGYQTK 333
K RR GD + A D+A +EL W+ + +ED C W W NP GYQ +
Sbjct: 305 YKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQLR 358
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 27/340 (7%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+IL+ GGAG+IG+H +L+ G VV++DNL +A+ E AK F+ G
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI--------TEGAK---FYNG 51
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
DLR+K L +F+ + EAV+HF A V S++ P +Y++NN+ G + L + M ++
Sbjct: 52 DLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD 111
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
K +FSS+A YG+ + E+ N YG TK E++ +A R + RYF
Sbjct: 112 KFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQA-SNLRYKIFRYF 170
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
N GA +G +GED + +L+P + QVA+G+ ++ ++G DY T DG+ +RDYIHV D
Sbjct: 171 NVAGATPNGIIGEDHRP-ETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229
Query: 246 LADGCIA-------------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATA 292
L YNLGNG G SV E+V A + + +IP + PRR GD
Sbjct: 230 LVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPAR 289
Query: 293 VYAATDKAHKELGWKPKY-GIEDMCAHQWNWAKNNPMGYQ 331
+ A++ KA ++LGW P+Y ++ + H WNW + P GY+
Sbjct: 290 LVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGYE 329
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 198/387 (51%), Gaps = 58/387 (14%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQ-GGFKVVLIDNL--------HNSVPEAVDR-VKDLA 52
S +LV GGAG+IG+H LL+ VV++D+L H E V R ++
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 53 GPE---LAKKLEFHVGDLRNKDDLDKLFSSQ-KFEAVIHFGALKAVAESVQHPFRYFDNN 108
GP+ + VGD+RN+D L+ +F+ +AV+H A AV ESV+ P +Y+DNN
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 109 LIGTINLYQAMAKYNCKKLVFSSSATIYGQP-------EKIPCVEDFPYGAMNPYGRTKQ 161
++G + L QAM + C K++FSSSA I+G P P + +PYG +K
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 162 WCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYI---------- 211
E + D +A + I LRYFN GAHE G +GE +G +L+P I
Sbjct: 181 IAERMIRDCAEA-YGIKGICLRYFNACGAHEDGDIGEHYQG-STHLIPIILGRVMSDIAP 238
Query: 212 -QQVAV----GRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCI--------------- 251
Q++ + + ++G DYPT DG+ VRDY+HV DLA I
Sbjct: 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKS 298
Query: 252 ----AYNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATAVYAATDKAHKELGWK 307
+NLG +G SV E++ K +G IP++ C RR GD + AA+DKA + LGWK
Sbjct: 299 KYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWK 358
Query: 308 PKY-GIEDMCAHQWNWAKNNPMGYQTK 333
PKY +E + W + + +P GY ++
Sbjct: 359 PKYDTLEAIMETSWKFQRTHPNGYASQ 385
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 160/322 (49%), Gaps = 38/322 (11%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+LVTGGAGFIG+H LL G +V ++DNL E V K + F
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----------PKGVPFFRV 50
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
DLR+K+ +++ F + V H A +V SV+ P F+ NL+G +NL +A +Y +
Sbjct: 51 DLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE 110
Query: 126 KLVFSSS-ATIYGQ-PEKIPCVEDFPYGAMNPYGRTKQWCEE-IAFDVQKADPEWRIILL 182
KLVF+S+ IYG+ PE E +P +PY +K E ++ Q +W + L
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKW--VSL 168
Query: 183 RYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIH 242
RY N G +DP G + + ++V G + +Y + P +G VRDY++
Sbjct: 169 RYGNVYGPR------QDPHGEAGVVAIFAERVLKGL--PVTLYARKTPGDEG-CVRDYVY 219
Query: 243 VMDLADG-CIA-------YNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATAVY 294
V D+A+ +A YN+G G+G + E++ A +A+GK ++ P R GD
Sbjct: 220 VGDVAEAHALALFSLEGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSV 279
Query: 295 AATDK--AHKELGWKPKYGIED 314
+ K AH GW+PK G ++
Sbjct: 280 LSPLKLMAH---GWRPKVGFQE 298
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 149/344 (43%), Gaps = 63/344 (18%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
I+VTGGAGFIG+H +L++ G++VV++DNL + E V+ E HV
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVN-----------PSAELHVR 50
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
DL++ + K + V HF A V S P +F+ N++ T N+ + + +
Sbjct: 51 DLKDYS----WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR 106
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+VF+SS+T+YG + IP E+ PY ++ YG K E + + R + +RY
Sbjct: 107 TVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAVRYA 165
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPE-LNVYGQDYPTKDGSAVRDYIHVM 244
N VG P+ + +I ++ R+P L V G DG+ + Y++V
Sbjct: 166 NVVG----------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYLYVR 207
Query: 245 DLADGC--------------IAYNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRR---- 286
D + +A N+GN + VL++ + G + I+ P
Sbjct: 208 DAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGR 267
Query: 287 --VGDATAVYAATDKAHKELGWKP--------KYGIEDMCAHQW 320
GD + A K K GW+P K ED+ W
Sbjct: 268 GWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKELW 311
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 142/328 (43%), Gaps = 46/328 (14%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPE-LAKKLEFHV 64
IL+TGGAGFIG H A L+ G +V ++D+L RV + PE K LE V
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDL---------RVPPMIPPEGTGKFLEKPV 59
Query: 65 GDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNC 124
+L +D D V H + K+V S + P Y DN G +L
Sbjct: 60 LELEERDLSD-------VRLVYHLASHKSVPRSFKQPLDYLDNVDSGR-HLLALCTSVGV 111
Query: 125 KKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRY 184
K+V S+ +YGQ + +P ED P +PY +K E +A Q+A + ++R+
Sbjct: 112 PKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRF 171
Query: 185 FNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVM 244
FN G E P+ L+P + + R+ EL V G DG RD+ ++
Sbjct: 172 FNVYGPGER----------PDALVPRLCANLLTRN-ELPVEG------DGEQRRDFTYIT 214
Query: 245 DLADGCIAY---------NLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATAVYA 295
D+ D +A N G+G+ +SV +++ + S + P R + T A
Sbjct: 215 DVVDKLVALANRPLPSVVNFGSGQSLSVNDVIRILQATSPAAEVARKQP-RPNEITEFRA 273
Query: 296 ATDKAHKELGWKP-KYGIEDMCAHQWNW 322
T +++G + GIE+ W
Sbjct: 274 DTALQTRQIGERSGGIGIEEGIRLTLEW 301
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 147/335 (43%), Gaps = 37/335 (11%)
Query: 6 NILVTGGAGFIGTHCALQLLQG--GFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH 63
NILVTGGAGFIG++ LQ +K++ D L S + ++ + F
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYS-----GNLNNVKSIQDHPNYYFV 80
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYN 123
G+++N + L+ + + + +++F A V S+++P ++D N+IGT+ L + + KY
Sbjct: 81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP 140
Query: 124 CKKLVFSSSATIYGQPEKI-PCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
KLV S+ +YG K E+ P +PY +K + IA K + +I+
Sbjct: 141 HIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKT-YQLPVIVT 199
Query: 183 RYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIH 242
R N G P P L+P A+ +L +YG DG VRD++H
Sbjct: 200 RCSNNYG----------PYQYPEKLIPLXVTNAL-EGKKLPLYG------DGLNVRDWLH 242
Query: 243 VMD--------LADGCI--AYNLGNGKGISVLEMVAAFEKASGK-KIPIKFCPRRVGDAT 291
V D L G + YN+G + +E+V GK K I++ R+G
Sbjct: 243 VTDHCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDR 302
Query: 292 AVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNN 326
+K E W+PKY E W + N
Sbjct: 303 RYAINAEKXKNEFDWEPKYTFEQGLQETVQWYEKN 337
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 147/344 (42%), Gaps = 67/344 (19%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
I+VTGGAGFIG+H +L++ G++VV++D + +D G E HV
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQ----------RDTGGSA-----ELHVR 46
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
DL++ + K + V HF A V S P +F+ N++ T N+ + + +
Sbjct: 47 DLKDY----SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR 102
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+VF+SS+T+YG + IP E+ PY ++ YG K E + + R + +RY
Sbjct: 103 TVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAVRYA 161
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPE-LNVYGQDYPTKDGSAVRDYIHVM 244
N VG P+ + +I ++ R+P L V G DG+ + Y++V
Sbjct: 162 NVVG----------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYLYVR 203
Query: 245 DLADGC--------------IAYNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRR---- 286
D + +A N+GN + VL++ + G + I+ P
Sbjct: 204 DAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGR 263
Query: 287 --VGDATAVYAATDKAHKELGWKP--------KYGIEDMCAHQW 320
GD + A K K GW+P K ED+ W
Sbjct: 264 GWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKELW 307
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 61/328 (18%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
I+VTGGAGFIG+H +L + ++V+IDNL + E V+ L +LA
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFVNEAARLVKADLAA-------- 54
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
DD+ E V H A V ++P + NN++ T L +AM K +
Sbjct: 55 ----DDIKDYLKGA--EEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSR 108
Query: 127 LVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEI------AFDVQKADPEWRII 180
+VF+S++T+YG+ + IP ED+P ++ YG +K CE + FD+Q W
Sbjct: 109 IVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQA----W--- 161
Query: 181 LLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHP-ELNVYGQDYPTKDGSAVRD 239
+ R+ N +G + + + +I ++ R+P EL + G +G +
Sbjct: 162 IYRFANVIGRRSTHGV----------IYDFIMKLK--RNPEELEILG------NGEQNKS 203
Query: 240 YIHVMDLADGCI----------AYNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRV-- 287
YI++ D D + +N+G+ I V + + G +F
Sbjct: 204 YIYISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGW 263
Query: 288 -GDATAVYAATDKAHKELGWKPKYGIED 314
GD + + +K K LGWKP+Y E+
Sbjct: 264 KGDVPVMLLSIEKL-KRLGWKPRYNSEE 290
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 141/340 (41%), Gaps = 37/340 (10%)
Query: 2 ASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLE 61
A K L+TG AGFIG++ LL+ KVV +DN +D V+ L + +
Sbjct: 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK 84
Query: 62 FHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAK 121
F GD+RN DD + + + V+H AL +V S+ P N+ G +N+ A
Sbjct: 85 FIQGDIRNLDDCNNACAGVDY--VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD 142
Query: 122 YNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIIL 181
+ +++S++ YG +P VED ++PY TK + E+ DV + I
Sbjct: 143 AKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTK-YVNELYADVFSRCYGFSTIG 201
Query: 182 LRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQD-YPTKDGSAVRDY 240
LRYFN G +DP G ++P + + G D Y DG RD+
Sbjct: 202 LRYFNVFGRR------QDPNGAYAAVIP--------KWTSSMIQGDDVYINGDGETSRDF 247
Query: 241 IHVMDLADGCI------------AYNLGNGKGISVLEMVAAFEKA------SGKKIPIKF 282
++ + + YN+ G S+ ++ A S + P+ +
Sbjct: 248 CYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV-Y 306
Query: 283 CPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNW 322
R GD A KA K LG+ PKY + A W
Sbjct: 307 RDFREGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPW 346
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 141/329 (42%), Gaps = 54/329 (16%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
K IL+TGGAGF+G+H +L+ G +V ++DN + +E +
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTG---------------RKRNVEHWI 50
Query: 65 G----DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMA 120
G +L N D ++ L+ + + + H + + + +P + N IGT+N+ +A
Sbjct: 51 GHENFELINHDVVEPLYI--EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML-GLA 107
Query: 121 KYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNP------YGRTKQWCEEIAFDVQKAD 174
K +L+ +S++ +YG PE P ED+ +G +NP Y K+ E + + K +
Sbjct: 108 KRVGARLLLASTSEVYGDPEVHPQSEDY-WGHVNPIGPRACYDEGKRVAETMCYAYMKQE 166
Query: 175 PEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 234
+ + R FN G D + + N +I Q G L VYG G
Sbjct: 167 -GVEVRVARIFNTFGPRMHMN---DGRVVSN----FILQALQGE--PLTVYG------SG 210
Query: 235 SAVRDYIHVMDLADGCIAY---------NLGNGKGISVLEMVAAFEKASGKKIPIKFCPR 285
S R + +V DL +G +A NLGN + ++LE + G I+F
Sbjct: 211 SQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE 270
Query: 286 RVGDATAVYAATDKAHKELGWKPKYGIED 314
D KA LGW+P +E+
Sbjct: 271 AQDDPQKRKPDIKKAKLMLGWEPVVPLEE 299
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 137/329 (41%), Gaps = 54/329 (16%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
K IL+TGGAGF+G+H +L G +V ++DN + +E +
Sbjct: 28 KRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTG---------------RKRNVEHWI 72
Query: 65 G----DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMA 120
G +L N D ++ L+ + + + H + + +P + N IGT+N +A
Sbjct: 73 GHENFELINHDVVEPLYI--EVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXL-GLA 129
Query: 121 KYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNP------YGRTKQWCEEIAFDVQKAD 174
K +L+ +S++ +YG PE P ED+ +G +NP Y K+ E + K +
Sbjct: 130 KRVGARLLLASTSEVYGDPEVHPQSEDY-WGHVNPIGPRACYDEGKRVAETXCYAYXKQE 188
Query: 175 PEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 234
+ + R FN G D + + N ++ +Q L VYG G
Sbjct: 189 G-VEVRVARIFNTFGPRXHXN---DGRVVSNFILQALQG------EPLTVYG------SG 232
Query: 235 SAVRDYIHVMDLADGCIAY---------NLGNGKGISVLEMVAAFEKASGKKIPIKFCPR 285
S R + +V DL +G +A NLGN + ++LE + G I+F
Sbjct: 233 SQTRAFQYVSDLVNGLVALXNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE 292
Query: 286 RVGDATAVYAATDKAHKELGWKPKYGIED 314
D KA LGW+P +E+
Sbjct: 293 AQDDPQKRKPDIKKAKLXLGWEPVVPLEE 321
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 139/338 (41%), Gaps = 35/338 (10%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEF 62
S K L+TG AGFIG++ +LL+ V+ +DN +D VK L E + F
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCF 83
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
GD+R+ +++ + + V+H AL +V S+ P N+ G +N+ A
Sbjct: 84 IEGDIRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA 141
Query: 123 NCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
+ +++S++ YG +P VE+ ++PY TK + EI V ++ I L
Sbjct: 142 QVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGL 200
Query: 183 RYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQD-YPTKDGSAVRDYI 241
RYFN G +DP G ++P + + G D Y DG RD+
Sbjct: 201 RYFNVFGRR------QDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFC 246
Query: 242 HVMDLADGCI------------AYNLGNGKGISVLEMVAAFEKASG-----KKIPIKFCP 284
++ ++ I YN+ G ++ E+ K+ IK+
Sbjct: 247 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 306
Query: 285 RRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNW 322
R GD A A KA L ++P I + W
Sbjct: 307 FRSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 45/348 (12%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGF-KVVLIDNLHNSVPEAVDRVKDLAGPELAKKLE 61
+ N++V GGAGF+G++ +LL+ G +V ++DNL ++ E ++ V D + E
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSA--EKIN-VPDHPAVRFS---E 84
Query: 62 FHVGDLRNKDDLDKLFSS--QKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAM 119
+ D D L +S +++ V H S+ P +NN + T+ LY+ +
Sbjct: 85 TSITD-------DALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERL 137
Query: 120 AKY-NCKKLVFSSSATIYGQP--EKIPCVEDFPYGAM----NPYGRTKQWCE--EIAFDV 170
+ KK+V+S++ + + E+ ++ +PY +K + E + +
Sbjct: 138 KHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHK 197
Query: 171 QKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYP 230
Q P R + P +G+ P + N+ P A+ G P
Sbjct: 198 QHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALK--------GMPLP 249
Query: 231 TKDGS-AVRDYIHVMDLADGCIA----------YNLGNGKGISVLEMVAAFEKASGKKIP 279
++G A RD+I V D+A+G IA YN+ +GK S+ ++ + +G
Sbjct: 250 LENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTE 309
Query: 280 IKFCPRRVGDATA-VYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNN 326
+ P+R D + + + +KA +ELG+ I+D W K N
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKAN 357
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 138/338 (40%), Gaps = 35/338 (10%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEF 62
S K L+TG AGFIG++ +LL+ V+ +DN +D VK L E + F
Sbjct: 37 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCF 96
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
GD+R+ +++ + + V+H AL +V S+ P N+ G +N+ A
Sbjct: 97 IEGDIRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA 154
Query: 123 NCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
+ +++S++ YG +P VE+ ++PY TK + EI V ++ I L
Sbjct: 155 QVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGL 213
Query: 183 RYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQD-YPTKDGSAVRDYI 241
RYFN G +DP G ++P + + G D Y DG RD+
Sbjct: 214 RYFNVFGRR------QDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFC 259
Query: 242 HVMDLADGCI------------AYNLGNGKGISVLEMVAAFEKASG-----KKIPIKFCP 284
++ ++ I YN+ G ++ E+ K+ IK+
Sbjct: 260 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 319
Query: 285 RRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNW 322
R GD A KA L ++P I + W
Sbjct: 320 FRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 357
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 138/338 (40%), Gaps = 35/338 (10%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEF 62
S K L+TG AGFIG++ +LL+ V+ +DN +D VK L E + F
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCF 83
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
GD+R+ +++ + + V+H AL +V S+ P N+ G +N+ A
Sbjct: 84 IEGDIRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA 141
Query: 123 NCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
+ +++S++ YG +P VE+ ++PY TK + EI V ++ I L
Sbjct: 142 QVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGL 200
Query: 183 RYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQD-YPTKDGSAVRDYI 241
RYFN G +DP G ++P + + G D Y DG RD+
Sbjct: 201 RYFNVFGRR------QDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFC 246
Query: 242 HVMDLADGCI------------AYNLGNGKGISVLEMVAAFEKASG-----KKIPIKFCP 284
++ ++ I YN+ G ++ E+ K+ IK+
Sbjct: 247 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 306
Query: 285 RRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNW 322
R GD A KA L ++P I + W
Sbjct: 307 FRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 138/338 (40%), Gaps = 35/338 (10%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEF 62
S K L+TG AGFIG++ +LL+ V+ +DN +D VK L E + F
Sbjct: 18 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCF 77
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
GD+R+ +++ + + V+H AL +V S+ P N+ G +N+ A
Sbjct: 78 IEGDIRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA 135
Query: 123 NCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
+ +++S++ YG +P VE+ ++PY TK + EI V ++ I L
Sbjct: 136 QVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGL 194
Query: 183 RYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQD-YPTKDGSAVRDYI 241
RYFN G +DP G ++P + + G D Y DG RD+
Sbjct: 195 RYFNVFGRR------QDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFC 240
Query: 242 HVMDLADGCI------------AYNLGNGKGISVLEMVAAFEKASG-----KKIPIKFCP 284
++ ++ I YN+ G ++ E+ K+ IK+
Sbjct: 241 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 300
Query: 285 RRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNW 322
R GD A KA L ++P I + W
Sbjct: 301 FRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 338
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 44/338 (13%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGF------KVVLIDNLHNSVPEAVDRVKDLAGPELAKKL 60
+LVTGGAGFIG+H QLL G + +V+++D+L + A +LA + +L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA-----NLAPVDADPRL 57
Query: 61 EFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMA 120
F GD+R+ L + + +A++HF A V S+ + + N+ GT L Q
Sbjct: 58 RFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAV 115
Query: 121 KYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRII 180
++V S+ +YG + E P +PY +K + +A + +
Sbjct: 116 DAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT-YGLDVR 174
Query: 181 LLRYFNPVGAHESGKLGEDPKGIPNNLMP-YIQQVAVGRHPELNVYGQDYPTKDGSAVRD 239
+ R N G ++ P L+P ++ + G L +YG DG+ VR+
Sbjct: 175 ITRCCNNYGPYQH----------PEKLIPLFVTNLLDG--GTLPLYG------DGANVRE 216
Query: 240 YIHVMD--------LADGCIA--YNLGNGKGISVLEMVAAFEKASGKK-IPIKFCPRRVG 288
++H D LA G Y++G G ++ E+ + G ++ R G
Sbjct: 217 WVHTDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKG 276
Query: 289 DATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNN 326
K +ELG++P+ D A W + N
Sbjct: 277 HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYREN 314
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 44/338 (13%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGF------KVVLIDNLHNSVPEAVDRVKDLAGPELAKKL 60
+LVTGGAGFIG+H QLL G + +V+++D+L + A +LA + +L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA-----NLAPVDADPRL 57
Query: 61 EFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMA 120
F GD+R+ L + + +A++HF A V S+ + + N+ GT L Q
Sbjct: 58 RFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAV 115
Query: 121 KYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRII 180
++V S+ +YG + E P +PY +K + +A + +
Sbjct: 116 DAGVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT-YGLDVR 174
Query: 181 LLRYFNPVGAHESGKLGEDPKGIPNNLMP-YIQQVAVGRHPELNVYGQDYPTKDGSAVRD 239
+ R N G ++ P L+P ++ + G L +YG DG+ VR+
Sbjct: 175 ITRCCNNYGPYQH----------PEKLIPLFVTNLLDG--GTLPLYG------DGANVRE 216
Query: 240 YIHVMD--------LADGCIA--YNLGNGKGISVLEMVAAFEKASGKK-IPIKFCPRRVG 288
++H D LA G Y++G G ++ E+ + G ++ R G
Sbjct: 217 WVHTDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKG 276
Query: 289 DATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKNN 326
K +ELG++P+ D A W + N
Sbjct: 277 HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYREN 314
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 56/355 (15%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+L+TGG GF+G++ A L G +++ DNL S A D + L+ EF GD
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNL--SRKGATDNLHWLSS---LGNFEFVHGD 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK- 125
+RNK+D+ +L + ++ H A+ S+ +P F+ N+ GT+NL +A+ +YN
Sbjct: 59 IRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNC 118
Query: 126 KLVFSSSATIYGQPE---------KIPCVEDFPYGA--------MNPYGRTKQWCEEIAF 168
+++SS+ +YG E + CV D P G +PYG +K ++
Sbjct: 119 NIIYSSTNKVYGDLEQYKYNETETRYTCV-DKPNGYDESTQLDFHSPYGCSKGAADQYML 177
Query: 169 DVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAV----GRHPELNV 224
D RI L V H S G + + Q AV G + +
Sbjct: 178 DYA------RIFGLN--TVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTI 229
Query: 225 YGQDYPTKDGSAVRDYIHVMDLADGCI------------AYNLGNGKGISVLEMVAAFEK 272
G +G VRD +H D+ A+N+G S+ +
Sbjct: 230 SG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLL 283
Query: 273 ASGKKIPIKFC--PRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKN 325
I ++F P R D A K + W PK +D ++W +
Sbjct: 284 EDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 338
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 44/329 (13%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEF 62
S IL+TGGAG +G++ L G ++++IDN E + V L+ E
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIE------- 71
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDN---NLIGTINLYQAM 119
G + + L++ F S K V+H A + + P + ++ N+ G+IN+ +A
Sbjct: 72 --GSVTDAGLLERAFDSFKPTHVVHSAA------AYKDPDDWAEDAATNVQGSINVAKAA 123
Query: 120 AKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRI 179
+K K+L+ +A YG+P +P D P YG +K E AF + P +
Sbjct: 124 SKAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGE--AFLMMSDVP---V 178
Query: 180 ILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRD 239
+ LR N G +L P IP + +++ G+ + D +D + D
Sbjct: 179 VSLRLANVTGP----RLAIGP--IPT----FYKRLKAGQ----KCFCSDT-VRDFLDMSD 223
Query: 240 YIHVMDLA--DG--CIAYNLGNGKGISVLEMVAAFEKASGKKI--PIKFCPRRVGDATAV 293
++ + DL+ +G +N+ G+G S+ E+ G + P+ D +V
Sbjct: 224 FLAIADLSLQEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSV 283
Query: 294 YAATDKAHKELGWKPKYGIEDMCAHQWNW 322
K E GWK K +D Q W
Sbjct: 284 VLDPSKTETEFGWKAKVDFKDTITGQLAW 312
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 143/358 (39%), Gaps = 75/358 (20%)
Query: 1 MASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPE--LAK 58
M+ KNI+VTGGAGFIG++ + ++H +V + + + A E L
Sbjct: 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNH------PDVHVTVLDKLTYAGNKANLEAILGD 54
Query: 59 KLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQA 118
++E VGD+ + + +DKL + K +A++H+ A S+ P + N IGT L +A
Sbjct: 55 RVELVVGDIADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEA 112
Query: 119 MAKYNCKKLVFSSSATIYGQPEKIPCVEDFP---------------YGAMNPYGRTKQWC 163
KY+ + S+ +YG +P ED P Y +PY TK
Sbjct: 113 ARKYDI-RFHHVSTDEVYGD---LPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAAS 168
Query: 164 EEIAFDVQKADPEW-RIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPEL 222
+ I W R ++ ++ G K IP I + G P+L
Sbjct: 169 DLIV-------KAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQ----ITNILAGIKPKL 217
Query: 223 NVYGQDYPTKDGSAVRDYIHVMDLADGCIA----------YNLG-----NGKGISVLEMV 267
YG+ G VRD+IH D + G A Y +G N K VLE++
Sbjct: 218 --YGE------GKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNK--EVLELI 267
Query: 268 AAFEKASGKKIPIKFCPRRVGDATAVYAATDKAHKELGWKPKY-----GIEDMCAHQW 320
EK K R G K ELGW P++ G+E+ QW
Sbjct: 268 --LEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETI--QW 321
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 147/335 (43%), Gaps = 31/335 (9%)
Query: 7 ILVTGGAGFIGTHCALQLLQG--GFKVVLIDNL-HNSVPEAVDRVKDLAGPELAKKLEFH 63
+LVTGG GFIG++ +L+ ++V+ ID L + S P +KDL E + F
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPA---NLKDL---EDDPRYTFV 59
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYN 123
GD+ + + + +L +K + V+H A V S+ P + +N+IGT L +++ + N
Sbjct: 60 KGDVADYELVKELV--RKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRREN 117
Query: 124 CK-KLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
+ + V S+ +YG K E+ +PY TK + + W
Sbjct: 118 PEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVLG-------WT---- 166
Query: 183 RYFNPVGAHESGKLGEDPKGIPNNLMP-YIQQVAVGRHPELNVYGQDYPTKDGSAVRDYI 241
R +N + P P L+P I + ++G ++ +YG +D V D++
Sbjct: 167 RTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGL--KIPIYGTGKNVRDWLYVEDHV 224
Query: 242 HVMDLA----DGCIAYNLGNGKGISVLEMVAAFEKASGK-KIPIKFCPRRVGDATAVYAA 296
++L + YN+ G+ + LE+V + GK + I+ R G
Sbjct: 225 RAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLD 284
Query: 297 TDKAHKELGWKPKYGIEDMCAHQWNWAKNNPMGYQ 331
+ K ++L W+PKY ++ +W N ++
Sbjct: 285 SWKITRDLKWRPKYTFDEGIKKTIDWYLKNEWWWK 319
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 142/361 (39%), Gaps = 67/361 (18%)
Query: 5 KNILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH 63
+ IL+TGGAGFIG+ ++ + VV++D L + + LA +++ F
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-----GNLMSLAPVAQSERFAFE 56
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY- 122
D+ ++ +L ++F+ + + V+H A V S+ P + + N++GT L +A Y
Sbjct: 57 KVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYW 116
Query: 123 ----NCKKLVFS----SSATIYGQPEKIPCVEDF-----PYGAMNPYGRTKQWCEEIAFD 169
KK F S+ +YG + +DF PY +PY +K + +
Sbjct: 117 NALTEDKKSAFRFHHISTDEVYGD---LHSTDDFFTETTPYAPSSPYSASKASSDHLV-- 171
Query: 170 VQKADPEWRIILLRYFNP-VGAHESGKLGEDPKGIPNNLMPY-IQQVAVGRHPELNVYGQ 227
R L Y P + + S G P P L+P I G+ L VYG
Sbjct: 172 --------RAWLRTYGLPTLITNCSNNYG--PYHFPEKLIPLMILNALAGK--SLPVYG- 218
Query: 228 DYPTKDGSAVRDYIHVMDLADG--CIA--------YNLG---NGKGISVLEMVAAFEKAS 274
+G +RD+++V D A C+A YN+G K + V+E + +
Sbjct: 219 -----NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEEL 273
Query: 275 GKKIP---------IKFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKN 325
P I F R G K +ELG P+ E W
Sbjct: 274 APNKPHGVAHYRDLITFVADRPGHDLRYAIDASKIARELGCVPQETFESGMRKTVQWYLA 333
Query: 326 N 326
N
Sbjct: 334 N 334
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 135/355 (38%), Gaps = 63/355 (17%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVL-IDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
IL+TGGAGFIG+ +++ V+ ID L ++ L+ + + F
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL-----TYAGNLESLSDISESNRYNFEHA 57
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY--- 122
D+ + ++ ++F + +AV+H A V S+ P + + N++GT L + KY
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 123 ------NCKKLVFSSSATIYG---QPEKIPCVEDFP-------YGAMNPYGRTKQWCEEI 166
N + S+ +YG P+++ P Y +PY +K + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 167 AFDVQKADPEWRIILLRYFNP-VGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVY 225
WR Y P + + S G P P L+P + A+ P L +Y
Sbjct: 178 V-------RAWR---RTYGLPTIVTNCSNNYG--PYHFPEKLIPLVILNALEGKP-LPIY 224
Query: 226 GQDYPTKDGSAVRDYIHVMDLADGC----------IAYNLGNGKGISVLEMVAAF----- 270
G+ G +RD+++V D A YN+G L++V
Sbjct: 225 GK------GDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLD 278
Query: 271 ---EKASGKKIPIKFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNW 322
KA+ + I + R G K +ELGWKP E W
Sbjct: 279 EIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEW 333
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 149/354 (42%), Gaps = 53/354 (14%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSV-PEAVDRVKDLAGPELAK-KLEF 62
K L+TG G G++ A LL+ G++V I +S E VD + P K
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHI--YQDPHTCNPKFHL 59
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
H GDL + +L ++ + + V + GA+ VA S + P D + +GT+ L +A+
Sbjct: 60 HYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL 119
Query: 123 NC-KKLVF--SSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRI 179
KK F +S++ +YG ++IP E P+ +PY K + I + +++ +
Sbjct: 120 GLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYAC 179
Query: 180 --ILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAV 237
IL FN HES + GE + + I +A G L + D +D
Sbjct: 180 NGIL---FN----HESPRRGE--TFVTRKITRAIANIAQGLESCLYLGNMD-SLRDWGHA 229
Query: 238 RDYIH---VMDLADGCIAYNLGNGKGISV---LEMVAA-------FE-----------KA 273
+DY+ +M + + + G SV +EM AA FE
Sbjct: 230 KDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSV 289
Query: 274 SGKKIP--------IKFCPR--RVGDATAVYAATDKAHKELGWKPKYGIEDMCA 317
+G P I PR R + + KAH++LGWKP+ + +M +
Sbjct: 290 TGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVS 343
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 143/352 (40%), Gaps = 59/352 (16%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
K + VTG GF G+ +L L + G V +VP + V+ L +E H+
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVR------LNDLMESHI 63
Query: 65 GDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY-N 123
GD+R+ + L + K E V H A V S + P + + N++GT++L + + + N
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 124 CKKLVFSSSATIYGQPEKIPCV-EDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
K +V +S Y E + E+ P G +PY +K E +A + +
Sbjct: 124 IKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNS--------- 174
Query: 183 RYFNPVGAHESG------KLGEDPKG---IPNNLMPYIQQVAVGRHPELNVYGQDYPTKD 233
+FNP + G + G G + L+P I R E N Q ++
Sbjct: 175 -FFNPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDIL-----RSFENN---QQVIIRN 225
Query: 234 GSAVRDYIHVMDLADGCIA---------------YNLG----NGKGISVL--EMVAAFEK 272
++R + HV++ G I +N G + K + + +MV +
Sbjct: 226 PYSIRPWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMVTLWGD 285
Query: 273 ASGKKIPIKFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAK 324
+ + + P +A + KA+ +LGW P++G+ + + W K
Sbjct: 286 DASWLLDGENHPH---EAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHK 334
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 127/305 (41%), Gaps = 52/305 (17%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
K + +TG G IG+H A LL+ G KVV IDN E +KD L F
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLKD------HPNLTFVE 72
Query: 65 GDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNL---IGTINLYQAMAK 121
G + + +++L + +AV+H A S + P ++++ L +G N+ QA K
Sbjct: 73 GSIADHALVNQLIGDLQPDAVVH------TAASYKDPDDWYNDTLTNCVGGSNVVQAAKK 126
Query: 122 YNCKKLVFSSSATIYG-QPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRII 180
N + V+ +A YG +P + P D P N + E + D +
Sbjct: 127 NNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLD----FV 182
Query: 181 LLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDY 240
R N VG P+ + L + Q+++ G+ + + TK A RD+
Sbjct: 183 TFRLANVVG----------PRNVSGPLPIFFQRLSEGK--------KCFVTK---ARRDF 221
Query: 241 IHVMDLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATAVYAATDKA 300
+ V DLA + G G G A+ +SG + IK V +A A+ + +
Sbjct: 222 VFVKDLARATVRAVDGVGHG--------AYHFSSGTDVAIKELYDAVVEAMALPSYPEPE 273
Query: 301 HKELG 305
+ELG
Sbjct: 274 IRELG 278
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 128/324 (39%), Gaps = 49/324 (15%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
L+TG AGF+G + A L + +V R + P +E D+
Sbjct: 16 LITGVAGFVGKYLANHLTEQNVEVF-----------GTSRNNEAKLP----NVEMISLDI 60
Query: 68 RNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYN--CK 125
+ + K+ S K + + H A +V +S + F N+ GT+++ A+ N C+
Sbjct: 61 MDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCR 120
Query: 126 KLVFSSSATIYGQ--PEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLR 183
L SS YG PE+ P E+ M+PYG +K +A KA II R
Sbjct: 121 ILTIGSSEE-YGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKA-YGMDIIHTR 178
Query: 184 YFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGS--AVRDYI 241
FN +G P + ++ Q + ++ + Q+ K G+ AVRD+
Sbjct: 179 TFNHIG--------------PGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFT 224
Query: 242 HVMDLADGCI----------AYNLGNGKGISVLEMVAAFEKASGKKIPIKFCP--RRVGD 289
V D+ YN+ +G G + +++ + KI + P R +
Sbjct: 225 DVRDIVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSE 284
Query: 290 ATAVYAATDKAHKELGWKPKYGIE 313
+ + + GWKP+ +E
Sbjct: 285 VPTLIGSNKRLKDSTGWKPRIPLE 308
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 48/294 (16%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
I+VTGGAGFIG++ L G +L+ VD +KD G + ++ ++ D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILV----------VDNLKD--GTKFVNLVDLNIAD 49
Query: 67 LRNKDD-LDKLFSSQKF---EAVIHFGALKAVAESVQHPFRY-FDNNLIGTINLYQAMAK 121
+K+D L ++ + ++F EA+ H GA + E +Y DNN + L +
Sbjct: 50 YMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTE---WDGKYMMDNNYQYSKELLHYCLE 106
Query: 122 YNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPE--WRI 179
L SS+AT G+ ++ +N YG +K +E V++ PE +I
Sbjct: 107 REIPFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKFLFDEY---VRQILPEANSQI 162
Query: 180 ILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRD 239
+ RYFN G E K N Q+ G P+L +++ RD
Sbjct: 163 VGFRYFNVYGPREGHKGSMASVAFHLN-----TQLNNGESPKLFEGSENFK-------RD 210
Query: 240 YIHVMDLADGCI---------AYNLGNGKGISVLEMVAAFEKASGKKIPIKFCP 284
+++V D+AD + +NLG G+ S + VA A KK I++ P
Sbjct: 211 FVYVGDVADVNLWFLENGVSGIFNLGTGRAES-FQAVADATLAYHKKGQIEYIP 263
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 138/340 (40%), Gaps = 56/340 (16%)
Query: 5 KNILVTGGAGFIGTHCALQLLQG--GFKVVLIDNLH------NSVPEAVDRVKDLAGPEL 56
+ IL+TGGAGF+G++ A + KVV++D N+ P ++ K+L G
Sbjct: 11 QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF-- 68
Query: 57 AKKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLY 116
K E D+ N DL +L F+ + H A+ Q N +NL
Sbjct: 69 --KGEVIAADINNPLDLRRL-EKLHFDYLFHQAAVSDTTMLNQE--LVMKTNYQAFLNLL 123
Query: 117 QAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPE 176
+ +A+ K++++SSA +YG K P V N YG +K +E + +
Sbjct: 124 E-IARSKKAKVIYASSAGVYGNT-KAPNVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQ 181
Query: 177 WRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSA 236
+ LRYFN G E K + Q+A+G V ++ G
Sbjct: 182 ---VGLRYFNVYGPREFYK---------EKTASMVLQLALGAMAFKEVKLFEF----GEQ 225
Query: 237 VRDYIHVMDLADGCI---------AYNLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRV 287
+RD++++ D+ + YN+G + S E+V+ ++ G F +
Sbjct: 226 LRDFVYIEDVIQANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLG-----DFKVTYI 280
Query: 288 GDATAVYAATDKAHKE-----LGWKPKY----GIEDMCAH 318
+ A + +AH E L + P Y GI+D H
Sbjct: 281 KNPYAFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPH 320
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
+ I+VTGGAGFIG++ L G +L+ VD +KD G + ++ ++
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILV----------VDNLKD--GTKFVNLVDLNI 94
Query: 65 GDLRNKDD-LDKLFSSQKF---EAVIHFGALKAVAESVQHPFRY-FDNNLIGTINLYQAM 119
D +K+D L ++ + ++F EA+ H GA + E +Y DNN + L
Sbjct: 95 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTE---WDGKYMMDNNYQYSKELLHYC 151
Query: 120 AKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKQWCEEIAFDVQKADPE-- 176
+ L SS+AT G+ +E Y +N +G +K +E V++ PE
Sbjct: 152 LEREIPFLYASSAATYGGRTSDF--IESREYEKPLNVFGYSKFLFDEY---VRQILPEAN 206
Query: 177 WRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSA 236
+I+ RYFN G E K N Q+ G P+L +++
Sbjct: 207 SQIVGFRYFNVYGPREGHKGSMASVAFHLN-----TQLNNGESPKLFEGSENFK------ 255
Query: 237 VRDYIHVMDLADGCI---------AYNLGNGKGISVLEMVAAFEKASGKKIPIKFCP 284
RD+++V D+AD + +NLG G+ S + VA A KK I++ P
Sbjct: 256 -RDFVYVGDVADVNLWFLENGVSGIFNLGTGRAES-FQAVADATLAYHKKGQIEYIP 310
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 74/177 (41%), Gaps = 23/177 (12%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
ILVTG AG +G L G V D R G E+ VG
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFDL----------RPSGTGGEEV-------VGS 64
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
L + L + AV+H GA + A + + R F N+ GT L A + ++
Sbjct: 65 LEDGQALSD--AIMGVSAVLHLGAFMSWAPADRD--RMFAVNVEGTRRLLDAASAAGVRR 120
Query: 127 LVFSSSATIY--GQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIIL 181
VF+SS +Y +PE +P ED P +PYG TK EE+ Q++ +IL
Sbjct: 121 FVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSGAMETVIL 177
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 154/373 (41%), Gaps = 64/373 (17%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNL------HN----------SVPEAVDRV 48
K ++V GG G+ G AL L + ++V ++DNL H S+ + + R
Sbjct: 2 KRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 49 KDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYF--- 105
K L G K +E +VGD+ + + L + F S + ++V+HFG ++ S+ R
Sbjct: 62 KALTG----KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQ 117
Query: 106 DNNLIGTINLYQAMAKY--NCKKLVFSS----------------SATIYGQPEKIPCVED 147
NN+IGT+N+ A+ ++ C + + + T G+ + +P
Sbjct: 118 HNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLP---- 173
Query: 148 FPYGAMNPYGRTK-QWCEEIAFD-----VQKADPEWRIILLRYFNPVGAHESGKLGEDPK 201
+P A + Y +K IAF ++ D ++ + HE + D
Sbjct: 174 YPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYD 233
Query: 202 GI-PNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIA----YNLG 256
+ L + Q AVG HP L VYG+ T+ +RD + +++A A + +
Sbjct: 234 AVFGTALNRFCVQAAVG-HP-LTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVF 291
Query: 257 N--GKGISVLEMVAAFEKASGK---KIPIKFCPR-RVGDATAVYAATDKAHKELGWKPKY 310
N + SV E+ + KA K + P RV Y A ELG +P Y
Sbjct: 292 NQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHY 351
Query: 311 GIEDMCAHQWNWA 323
+ + N+A
Sbjct: 352 LSDSLLDSLLNFA 364
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 153/371 (41%), Gaps = 64/371 (17%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNL------HN----------SVPEAVDRVKD 50
++V GG G+ G AL L + ++V ++DNL H S+ + + R K
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 51 LAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYF---DN 107
L G K +E +VGD+ + + L + F S + ++V+HFG ++ S+ R N
Sbjct: 74 LTG----KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 129
Query: 108 NLIGTINLYQAMAKYNCK-KLVFSSSATIYGQP-----------------EKIPCVEDFP 149
N+IGT+N+ A+ ++ + LV + YG P + +P +P
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLP----YP 185
Query: 150 YGAMNPYGRTK-QWCEEIAFD-----VQKADPEWRIILLRYFNPVGAHESGKLGEDPKGI 203
A + Y +K IAF ++ D ++ + HE + D +
Sbjct: 186 KQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245
Query: 204 -PNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIA----YNLGN- 257
L + Q AVG HP L VYG+ T+ +RD + +++A A + + N
Sbjct: 246 FGTALNRFCVQAAVG-HP-LTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQ 303
Query: 258 -GKGISVLEMVAAFEKASGK---KIPIKFCPR-RVGDATAVYAATDKAHKELGWKPKYGI 312
+ SV E+ + KA K + P RV Y A ELG +P Y
Sbjct: 304 FTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLS 363
Query: 313 EDMCAHQWNWA 323
+ + N+A
Sbjct: 364 DSLLDSLLNFA 374
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 153/371 (41%), Gaps = 64/371 (17%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNL------HN----------SVPEAVDRVKD 50
++V GG G+ G AL L + ++V ++DNL H S+ + + R K
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 51 LAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYF---DN 107
L G K +E +VGD+ + + L + F S + ++V+HFG ++ S+ R N
Sbjct: 74 LTG----KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 129
Query: 108 NLIGTINLYQAMAKYNCK-KLVFSSSATIYGQP-----------------EKIPCVEDFP 149
N+IGT+N+ A+ ++ + LV + YG P + +P +P
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLP----YP 185
Query: 150 YGAMNPYGRTK-QWCEEIAFD-----VQKADPEWRIILLRYFNPVGAHESGKLGEDPKGI 203
A + Y +K IAF ++ D ++ + HE + D +
Sbjct: 186 KQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245
Query: 204 -PNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIA----YNLGN- 257
L + Q AVG HP L VYG+ T+ +RD + +++A A + + N
Sbjct: 246 FGTALNRFCVQAAVG-HP-LTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQ 303
Query: 258 -GKGISVLEMVAAFEKASGK---KIPIKFCPR-RVGDATAVYAATDKAHKELGWKPKYGI 312
+ SV E+ + KA K + P RV Y A ELG +P Y
Sbjct: 304 FTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLS 363
Query: 313 EDMCAHQWNWA 323
+ + N+A
Sbjct: 364 DSLLDSLLNFA 374
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 139/350 (39%), Gaps = 66/350 (18%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGG-FKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH 63
K +L+ G GFIG H + ++L+ ++V +D DR+ DL E ++ F
Sbjct: 25 KKVLILGVNGFIGHHLSKRILETTDWEVFGMD-------MQTDRLGDLVKHE---RMHFF 74
Query: 64 VGDLR-NKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
GD+ NK+ ++ + +K + ++ A+ A V+ P R F+ + + + ++ KY
Sbjct: 75 EGDITINKEWVE--YHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY 132
Query: 123 NCKKLVFSSSATIYGQ---PEKIPCVEDFPYGAMNP----YGRTKQWCEEIAFDVQKADP 175
K LVF S++ +YG + P YG +N Y +KQ + + +
Sbjct: 133 G-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEG- 190
Query: 176 EWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKD-G 234
L R FN +G G D P + +G V G++ D G
Sbjct: 191 -LNFTLFRPFNWIGP------GLDSIYTPKEGSSRVVTQFLGHI----VRGENISLVDGG 239
Query: 235 SAVRDYIHVMD--------------LADGCIAYNLGN-GKGISV-------LEMVAAFEK 272
S R + +V D +A G I YN+GN SV LE+ A F +
Sbjct: 240 SQKRAFTYVDDGISALMKIIENSNGVATGKI-YNIGNPNNNFSVRELANKMLELAAEFPE 298
Query: 273 ASGKKIPIKFCPRRVG--------DATAVYAATDKAHKELGWKPKYGIED 314
+ +K G D + +ELGW P++ +D
Sbjct: 299 YADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDD 348
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDL-AGPE--LAKKLEFHV 64
L+TG G G++ A LL+ G++V I + S R++ L P+ + ++ H
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGI--VRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY 85
Query: 65 GDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAK--- 121
GDL + L K+ + K + + GA V S D + +GT+ L A+
Sbjct: 86 GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL 145
Query: 122 YNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKA 173
N K +S++ +YG+ ++IP E P+ +PYG K + I + ++A
Sbjct: 146 INSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREA 197
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 132/355 (37%), Gaps = 63/355 (17%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
K + VTG GF G +L L G V +VP + + +A ++ +
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR------VADGMQSEI 63
Query: 65 GDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY-N 123
GD+R+++ L + + E V H A V S P + N++GT+ L +A+
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 124 CKKLVFSSSATIYGQPEKIPCV-EDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILL 182
K +V +S Y E I E+ G +PY +K C E+ +
Sbjct: 124 VKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKG-CAELVTSSYRNS-------- 174
Query: 183 RYFNPV--GAH-------ESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPT-- 231
+FNP G H +G + + ++P I L + Q P
Sbjct: 175 -FFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDI----------LRAFEQSQPVII 223
Query: 232 KDGSAVRDYIHVMDLADGCI---------------AYNLGNGKGIS------VLEMVAAF 270
++ A+R + HV++ G + +N G + V +MV +
Sbjct: 224 RNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYW 283
Query: 271 EKASGKKIPIKFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAKN 325
+ + ++ P +A + KA +LGW P++ + + W KN
Sbjct: 284 GEGASWQLDGNAHPH---EAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKN 335
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 108/282 (38%), Gaps = 51/282 (18%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
I VTGG GF+G + + G + P + R G + E+ V D
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDG-----------NTPIILTRS---IGNKAINDYEYRVSD 50
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKK 126
+D +++L +AV+H A + Q F +N I T NLY A + N
Sbjct: 51 YTLEDLINQL---NDVDAVVHLAATRG----SQGKISEFHDNEILTQNLYDACYENNISN 103
Query: 127 LVFSSSATIYGQPEKIPCVE-DFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYF 185
+V++S+ + Y +P E + P + YG +K CE I ++ I LR+
Sbjct: 104 IVYASTISAYSDETSLPWNEKELPLPDL-XYGVSKLACEHIG-NIYSRKKGLCIKNLRFA 161
Query: 186 NPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMD 245
+ G +E + + +Q G L+ + A R++++ D
Sbjct: 162 HLYGFNEKNNYX---------INRFFRQAFHGEQLTLHA--------NSVAKREFLYAKD 204
Query: 246 LADGCI----------AYNLGNGKGISVLEMVAAFEKASGKK 277
A I +N+G+G ++ E+ A G K
Sbjct: 205 AAKSVIYALKQEKVSGTFNIGSGDALTNYEVANTINNAFGNK 246
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 120/301 (39%), Gaps = 60/301 (19%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGF-------KVVLIDNLHNSVPE----AVD-RVKDLAG 53
+I + G AG +G +L++ G K LID P AVD R DL+
Sbjct: 16 HIAIIGAAGXVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSA 75
Query: 54 PELAKKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPF-RYFDNNLIGT 112
P A+KL + + D+ + H A+ V+ + F + + NL GT
Sbjct: 76 PGEAEKL------VEARPDV-----------IFHLAAI--VSGEAELDFDKGYRINLDGT 116
Query: 113 INLYQAMAKYNCK-----KLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIA 167
L+ A+ N K ++VF+SS ++G P P ++F + YG K CE +
Sbjct: 117 RYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLL 176
Query: 168 FDVQKADPEWRIILLRYFNPVGAH------ESGKLGEDPKGIPNNLM--PYIQQVAVGRH 219
D + +F+ +G GK G +N++ P + Q AV
Sbjct: 177 SDYSRRG---------FFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPV 227
Query: 220 PELNVYGQDYPTKDGSAVRDYIH--VMDLADGCIAYNLGN-GKGISVLEMVAAFEKASGK 276
PE + P SAV IH +D+ NL G +V E + A K +G+
Sbjct: 228 PESIRHWHASPR---SAVGFLIHGAXIDVEKVGPRRNLSXPGLSATVGEQIEALRKVAGE 284
Query: 277 K 277
K
Sbjct: 285 K 285
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 133/326 (40%), Gaps = 70/326 (21%)
Query: 49 KDLAGPELAKKLEFHVGD----LRNKDDLDKL--------FSSQKFEAVIHFGA-LKAVA 95
+ + G + ++LE GD LR +D+L+ L F+S++ + V A + +
Sbjct: 12 RGMVGSAIRRQLE-QRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIV 70
Query: 96 ESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVE-DFPYGAMN 154
+ +P + N++ N+ A + + KL+F S+ IY + K P E + G +
Sbjct: 71 ANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLE 130
Query: 155 P----YGRTK----QWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNN 206
P Y K + CE +++ Q ++R ++ N G H++ + IP
Sbjct: 131 PTNEPYAIAKIAGIKLCE--SYNRQYGR-DYRSVMPT--NLYGPHDNFH-PSNSHVIPA- 183
Query: 207 LMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAY------------- 253
L+ + + P++ V+G G+ +R+++HV D+A I
Sbjct: 184 LLRRFHEATAQKAPDVVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQ 237
Query: 254 ------NLGNGKGISVLEMVAAFEKASGKKIPIKF-------CPRRVGDATAVYAATDKA 300
N+G G ++ E+ K G K + F PR++ D T ++
Sbjct: 238 PMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH------ 291
Query: 301 HKELGWKPKYGIEDMCAHQWNWAKNN 326
+LGW + +E A + W N
Sbjct: 292 --QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 24/145 (16%)
Query: 7 ILVTGGAGFIGTHCALQLLQG-GFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
ILVTG +G IGT L + G K V+ ++ +D G ++F
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQ---------RDTGG------IKFITL 46
Query: 66 DLRNKDDLDKLFSSQKFEAVIHF-GALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNC 124
D+ N+D++D+ +A+ H G L A E + P + N+ GT N+ +A ++
Sbjct: 47 DVSNRDEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRV 104
Query: 125 KKLVFSSSATIYGQPE----KIPCV 145
+K+V S+ ++G PE K+P +
Sbjct: 105 EKVVIPSTIGVFG-PETPKNKVPSI 128
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 24/145 (16%)
Query: 7 ILVTGGAGFIGTHCALQLLQG-GFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
ILVTG +G IGT L + G K V+ ++ +D G ++F
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQ---------RDTGG------IKFITL 46
Query: 66 DLRNKDDLDKLFSSQKFEAVIHF-GALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNC 124
D+ N+D++D+ +A+ H G L A E + P + N+ GT N+ +A ++
Sbjct: 47 DVSNRDEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRV 104
Query: 125 KKLVFSSSATIYGQPE----KIPCV 145
+K+V S+ ++G PE K+P +
Sbjct: 105 EKVVIPSTIGVFG-PETPKNKVPSI 128
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 132/326 (40%), Gaps = 70/326 (21%)
Query: 49 KDLAGPELAKKLEFHVGD----LRNKDDLDKL--------FSSQKFEAVIHFGA-LKAVA 95
+ + G + ++LE GD LR +D+L+ L F+S++ + V A + +
Sbjct: 12 RGMVGSAIRRQLE-QRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIV 70
Query: 96 ESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVE-DFPYGAMN 154
+ +P + N++ N+ A + + KL+F S+ IY + K P E + G +
Sbjct: 71 ANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLE 130
Query: 155 P----YGRTK----QWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNN 206
P Y K + CE +++ Q ++R ++ N G H++ + IP
Sbjct: 131 PTNEPYAIAKIAGIKLCE--SYNRQYGR-DYRSVMPT--NLYGPHDNFH-PSNSHVIPA- 183
Query: 207 LMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAY------------- 253
L+ + P++ V+G G+ +R+++HV D+A I
Sbjct: 184 LLRRFHEATAQNAPDVVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQ 237
Query: 254 ------NLGNGKGISVLEMVAAFEKASGKKIPIKF-------CPRRVGDATAVYAATDKA 300
N+G G ++ E+ K G K + F PR++ D T ++
Sbjct: 238 PMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH------ 291
Query: 301 HKELGWKPKYGIEDMCAHQWNWAKNN 326
+LGW + +E A + W N
Sbjct: 292 --QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 131/326 (40%), Gaps = 70/326 (21%)
Query: 49 KDLAGPELAKKLEFHVGD----LRNKDDLDKL--------FSSQKFEAVIHFGA-LKAVA 95
+ + G + ++LE GD LR +D+L+ L F+S++ + V A + +
Sbjct: 12 RGMVGSAIRRQLE-QRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIV 70
Query: 96 ESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVE-DFPYGAMN 154
+ +P + N++ N+ A + + KL+F S+ IY + K P E + G +
Sbjct: 71 ANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLE 130
Query: 155 PYGRTK--------QWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNN 206
P + + CE +++ Q ++R ++ N G H++ + IP
Sbjct: 131 PTNEPEAIAKIAGIKLCE--SYNRQYGR-DYRSVMPT--NLYGPHDNFH-PSNSHVIPA- 183
Query: 207 LMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAY------------- 253
L+ + P++ V+G G+ +R+++HV D+A I
Sbjct: 184 LLRRFHEATAQSAPDVVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQ 237
Query: 254 ------NLGNGKGISVLEMVAAFEKASGKKIPIKF-------CPRRVGDATAVYAATDKA 300
N+G G ++ E+ K G K + F PR++ D T ++
Sbjct: 238 PMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH------ 291
Query: 301 HKELGWKPKYGIEDMCAHQWNWAKNN 326
+LGW + +E A + W N
Sbjct: 292 --QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 134/342 (39%), Gaps = 58/342 (16%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLID---NLHNSVPEAVDRVKDLAGPELAKKLEFH 63
I +TG GFI +H A +L G V+ D N H + D EFH
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD--------------EFH 77
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQ--HPFRYFDNNLIGTINLYQAMAK 121
+ DLR ++ K+ ++ + V + A +Q H ++N +I + N+ +A
Sbjct: 78 LVDLRVMENCLKV--TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI-SFNMIEAARI 134
Query: 122 YNCKKLVFSSSATIYGQPEKIPCV-------EDFPYGAMNPYGRTKQWCEEIAFDVQKAD 174
K+ ++SSA IY + +++ + +P + YG K EE+ K D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK-D 193
Query: 175 PEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 234
+ R+ N G + K G + P Q ++G DG
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGRE--AAPAAFCRKAQTST----DRFEMWG------DG 241
Query: 235 SAVRDYIHVMDLADGCIAY---------NLGNGKGIS---VLEMVAAFEKASGKKIPIKF 282
R + + + +G + N+G+ + +S + EMV +FE+ KK+PI
Sbjct: 242 LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEE---KKLPIHH 298
Query: 283 CPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAK 324
P G + + ++LGW P +++ + W K
Sbjct: 299 IPGPEG-VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIK 339
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 136/344 (39%), Gaps = 62/344 (18%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLID---NLHNSVPEAVDRVKDLAGPELAKKLEFH 63
I +TG GFI +H A +L G V+ D N H + D EFH
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD--------------EFH 77
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQ--HPFRYFDNNLIGTINLYQAMAK 121
+ DLR ++ K+ ++ + V + A +Q H ++N +I + N+ +A
Sbjct: 78 LVDLRVMENCLKV--TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI-SFNMIEAARI 134
Query: 122 YNCKKLVFSSSATIYGQPEKIPCV-------EDFPYGAMNPYGRTKQWCEEIAFDVQKAD 174
K+ ++SSA IY + +++ + +P + YG K EE+ K D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK-D 193
Query: 175 PEWRIILLRYFNPVGAHESGKLGED--PKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTK 232
+ R+ N G + K G + P Q + R ++G
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRK-----AQTSTDR---FEMWG------ 239
Query: 233 DGSAVRDYIHVMDLADGCIAY---------NLGNGKGIS---VLEMVAAFEKASGKKIPI 280
DG R + + + +G + N+G+ + +S + EMV +FE+ KK+PI
Sbjct: 240 DGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEE---KKLPI 296
Query: 281 KFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAK 324
P G + + ++LGW P +++ + W K
Sbjct: 297 HHIPGPEG-VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIK 339
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 132/326 (40%), Gaps = 70/326 (21%)
Query: 49 KDLAGPELAKKLEFHVGD----LRNKDDLDKL--------FSSQKFEAVIHFGA-LKAVA 95
+ + G + ++LE GD LR +D+L+ L F+S++ + V A + +
Sbjct: 12 RGMVGSAIRRQLE-QRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIV 70
Query: 96 ESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVE-DFPYGAMN 154
+ +P + N++ N+ A + + KL+F S+ IY + K P E + G +
Sbjct: 71 ANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLE 130
Query: 155 P----YGRTK----QWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNN 206
P Y + + CE +++ Q ++R ++ N G H++ + IP
Sbjct: 131 PTNEPYAIARIAGIKLCE--SYNRQYGR-DYRSVMPT--NLYGPHDNFH-PSNSHVIPA- 183
Query: 207 LMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAY------------- 253
L+ + P++ V+G G+ +R+++HV D+A I
Sbjct: 184 LLRRFHEATAQSAPDVVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQ 237
Query: 254 ------NLGNGKGISVLEMVAAFEKASGKKIPIKF-------CPRRVGDATAVYAATDKA 300
N+G G ++ E+ K G K + F PR++ D T ++
Sbjct: 238 PMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH------ 291
Query: 301 HKELGWKPKYGIEDMCAHQWNWAKNN 326
+LGW + +E A + W N
Sbjct: 292 --QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 62/344 (18%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLID---NLHNSVPEAVDRVKDLAGPELAKKLEFH 63
I +TG GFI +H A +L G V+ D N H + D EFH
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD--------------EFH 77
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQ--HPFRYFDNNLIGTINLYQAMAK 121
+ DLR ++ K+ ++ + V + A +Q H ++N +I + N+ +A
Sbjct: 78 LVDLRVMENCLKV--TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI-SFNMIEAARI 134
Query: 122 YNCKKLVFSSSATIYGQPEKIPCV-------EDFPYGAMNPYGRTKQWCEEIAFDVQKAD 174
K+ ++SSA IY + +++ + +P + YG + EE+ K D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNK-D 193
Query: 175 PEWRIILLRYFNPVGAHESGKLGED--PKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTK 232
+ R+ N G + K G + P Q + R ++G
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRK-----AQTSTDR---FEMWG------ 239
Query: 233 DGSAVRDYIHVMDLADGCIAY---------NLGNGKGIS---VLEMVAAFEKASGKKIPI 280
DG R + + + +G + N+G+ + +S + EMV +FE+ KK+PI
Sbjct: 240 DGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEE---KKLPI 296
Query: 281 KFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAK 324
P G + + ++LGW P +++ + W K
Sbjct: 297 HHIPGPEG-VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIK 339
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 132/326 (40%), Gaps = 70/326 (21%)
Query: 49 KDLAGPELAKKLEFHVGD----LRNKDDLDKL--------FSSQKFEAVIHFGA-LKAVA 95
+ + G + ++LE GD LR +D+L+ L F+S++ + V A + +
Sbjct: 12 RGMVGSAIRRQLE-QRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIV 70
Query: 96 ESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVE-DFPYGAMN 154
+ +P + N++ N+ A + + KL+F ++ IY + K P E + G +
Sbjct: 71 ANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCIYPKLAKQPMAESELLQGTLE 130
Query: 155 P----YGRTK----QWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNN 206
P Y K + CE +++ Q ++R ++ N G H++ + IP
Sbjct: 131 PTNEPYAIAKIAGIKLCE--SYNRQYGR-DYRSVMPT--NLYGPHDNFH-PSNSHVIPA- 183
Query: 207 LMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAY------------- 253
L+ + P++ V+G G+ +R+++HV D+A I
Sbjct: 184 LLRRFHEATAQSAPDVVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQ 237
Query: 254 ------NLGNGKGISVLEMVAAFEKASGKKIPIKF-------CPRRVGDATAVYAATDKA 300
N+G G ++ E+ K G K + F PR++ D T ++
Sbjct: 238 PMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH------ 291
Query: 301 HKELGWKPKYGIEDMCAHQWNWAKNN 326
+LGW + +E A + W N
Sbjct: 292 --QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 132/326 (40%), Gaps = 70/326 (21%)
Query: 49 KDLAGPELAKKLEFHVGD----LRNKDDLDKL--------FSSQKFEAVIHFGA-LKAVA 95
+ + G + ++LE GD LR +D+L+ L F+S++ + V A + +
Sbjct: 12 RGMVGSAIRRQLE-QRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIV 70
Query: 96 ESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVE-DFPYGAMN 154
+ +P + N++ N+ A + + KL+F S+ IY + K P E + G +
Sbjct: 71 ANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLE 130
Query: 155 P----YGRTK----QWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNN 206
P Y K + CE +++ Q ++R ++ N G H++ + IP
Sbjct: 131 PTNEPYAIAKIAGIKLCE--SYNRQYGR-DYRSVMPT--NLYGPHDNFH-PSNSHVIPA- 183
Query: 207 LMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAY------------- 253
L+ + P++ V+G G+ +R+++HV D+A I
Sbjct: 184 LLRRFHEATAQNAPDVVVWG------SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQ 237
Query: 254 ------NLGNGKGISVLEMVAAFEKASGKKIPIKF-------CPRRVGDATAVYAATDKA 300
N+G G ++ ++ K G K + F PR++ D T ++
Sbjct: 238 PMLSHINVGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH------ 291
Query: 301 HKELGWKPKYGIEDMCAHQWNWAKNN 326
+LGW + +E A + W N
Sbjct: 292 --QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 62/344 (18%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLID---NLHNSVPEAVDRVKDLAGPELAKKLEFH 63
I +TG GFI +H A +L G V+ D N H + D EFH
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD--------------EFH 77
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQ--HPFRYFDNNLIGTINLYQAMAK 121
+ DLR ++ K+ ++ + V + A +Q H ++N +I + N+ +A
Sbjct: 78 LVDLRVMENCLKV--TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI-SFNMIEAARI 134
Query: 122 YNCKKLVFSSSATIYGQPEKIPCV-------EDFPYGAMNPYGRTKQWCEEIAFDVQKAD 174
K+ ++SSA IY + +++ + +P + +G K EE+ K D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK-D 193
Query: 175 PEWRIILLRYFNPVGAHESGKLGED--PKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTK 232
+ R+ N G + K G + P Q + R ++G
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRK-----AQTSTDR---FEMWG------ 239
Query: 233 DGSAVRDYIHVMDLADGCIAY---------NLGNGKGIS---VLEMVAAFEKASGKKIPI 280
DG R + + + +G + N+G+ + +S + EMV +FE+ KK+PI
Sbjct: 240 DGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEE---KKLPI 296
Query: 281 KFCPRRVGDATAVYAATDKAHKELGWKPKYGIEDMCAHQWNWAK 324
P G + + ++LGW P +++ + W K
Sbjct: 297 HHIPGPEG-VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIK 339
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 1 MASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVK--DLAGPELAK 58
M + IL+TGG G G C ++ KV+ N + + D +K ++A
Sbjct: 18 MLDNQTILITGGTGSFG-KCFVR------KVLDTTNAKKIIVYSRDELKQSEMAMEFNDP 70
Query: 59 KLEFHVGDLRNKDDLDKL-FSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQ 117
++ F +GD+R DL++L ++ + + IH ALK V + +P N++G N+
Sbjct: 71 RMRFFIGDVR---DLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVIN 127
Query: 118 AMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQ--KADP 175
A K +++ S+ D +N YG TK +++ K
Sbjct: 128 ACLKNAISQVIALST--------------DKAANPINLYGATKLCSDKLFVSANNFKGSS 173
Query: 176 EWRIILLRYFNPVGAHES 193
+ + ++RY N VG+ S
Sbjct: 174 QTQFSVVRYGNVVGSRGS 191
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEF 62
S K L+TG G G + A LL+ G++V D S A R+K+L G E K+
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGAD--RRSGEFASWRLKEL-GIENDVKI-I 57
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
H+ DL ++ + + + V + A V S + P + + IG + + +A+
Sbjct: 58 HM-DLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV 116
Query: 123 NC-KKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKA 173
K +S++ ++G+ ++IP E P+ +PY K + I + ++A
Sbjct: 117 KPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREA 168
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)
Query: 7 ILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+L+ G GFIG H +LL + ++V +D +++ ++ F G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH----------PHFHFVEG 65
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
D+ + + + +K + V+ A+ E ++P R F+ + + + + KY K
Sbjct: 66 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNP-------YGRTKQWCEEIAFDVQKADPEWR 178
+++F S+A +YG ED + P Y +KQ + + + + + +
Sbjct: 124 RIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQ 182
Query: 179 IILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVR 238
L R FN +G L G + I + G +L G+ + + +R
Sbjct: 183 FTLFRPFNWMGP-RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ--KRCFTDIR 239
Query: 239 DYIHVM--------DLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIK-----FCPR 285
D I + + DG I N+GN + + +E + AS +K P++ F
Sbjct: 240 DGIEALYRIIENAGNRCDGEII-NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 298
Query: 286 RVGDATAVYA-----------ATDKAHKELGWKPKYGIED 314
RV ++++ Y + AH+ L W+PK +++
Sbjct: 299 RVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 338
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)
Query: 7 ILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+L+ G GFIG H +LL + ++V +D +++ ++ F G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH----------PHFHFVEG 65
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
D+ + + + +K + V+ A+ E ++P R F+ + + + + KY K
Sbjct: 66 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNP-------YGRTKQWCEEIAFDVQKADPEWR 178
+++F S++ +YG ED + P Y +KQ + + + + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQ 182
Query: 179 IILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVR 238
L R FN +G L G + I + G +L G+ + + +R
Sbjct: 183 FTLFRPFNWMGP-RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ--KRCFTDIR 239
Query: 239 DYIHVM--------DLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIK-----FCPR 285
D I + + DG I N+GN + + +E + AS +K P++ F
Sbjct: 240 DGIEALYRIIENAGNRCDGEII-NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 298
Query: 286 RVGDATAVYA-----------ATDKAHKELGWKPKYGIED 314
RV ++++ Y + AH+ L W+PK +++
Sbjct: 299 RVVESSSYYGKGYQDVEHEKPSIRNAHRCLDWEPKIDMQE 338
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)
Query: 7 ILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+L+ G GFIG H +LL + ++V +D +++ ++ F G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH----------PHFHFVEG 65
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
D+ + + + +K + V+ A+ E ++P R F+ + + + + KY K
Sbjct: 66 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNP-------YGRTKQWCEEIAFDVQKADPEWR 178
+++F S++ +YG ED + P Y +KQ + + + + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQ 182
Query: 179 IILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVR 238
L R FN +G L G + I + G +L G+ + + +R
Sbjct: 183 FTLFRPFNWMGP-RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ--KRCFTDIR 239
Query: 239 DYIHVM--------DLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIK-----FCPR 285
D I + + DG I N+GN + + +E + AS +K P++ F
Sbjct: 240 DGIEALYRIIENAGNRCDGEII-NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 298
Query: 286 RVGDATAVYA-----------ATDKAHKELGWKPKYGIED 314
RV ++++ Y + AH+ L W+PK +++
Sbjct: 299 RVVESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQE 338
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)
Query: 7 ILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+L+ G GFIG H +LL + ++V +D +++ ++ F G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH----------PHFHFVEG 65
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
D+ + + + +K + V+ A+ E ++P R F+ + + + + KY K
Sbjct: 66 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNP-------YGRTKQWCEEIAFDVQKADPEWR 178
+++F S++ +YG ED + P Y +KQ + + + + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQ 182
Query: 179 IILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVR 238
L R FN +G L G + I + G +L G+ + + +R
Sbjct: 183 FTLFRPFNWMGP-RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ--KRCFTDIR 239
Query: 239 DYIHVM--------DLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIK-----FCPR 285
D I + + DG I N+GN + + +E + AS +K P++ F
Sbjct: 240 DGIEALYRIIENAGNRCDGEII-NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 298
Query: 286 RVGDATAVYA-----------ATDKAHKELGWKPKYGIED 314
RV ++++ Y + AH+ L W+PK +++
Sbjct: 299 RVVESSSYYGKGYQDVEHMKPSIRNAHRCLDWEPKIDMQE 338
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)
Query: 7 ILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+L+ G GFIG H +LL + ++V +D +++ ++ F G
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH----------PHFHFVEG 52
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
D+ + + + +K + V+ A+ E ++P R F+ + + + + KY K
Sbjct: 53 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 110
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNP-------YGRTKQWCEEIAFDVQKADPEWR 178
+++F S++ +YG ED + P Y +KQ + + + + + +
Sbjct: 111 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQ 169
Query: 179 IILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVR 238
L R FN +G L G + I + G +L G+ + + +R
Sbjct: 170 FTLFRPFNWMGP-RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ--KRCFTDIR 226
Query: 239 DYIHVM--------DLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIK-----FCPR 285
D I + + DG I N+GN + + +E + AS +K P++ F
Sbjct: 227 DGIEALYRIIENAGNRCDGEII-NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 285
Query: 286 RVGDATAVYA-----------ATDKAHKELGWKPKYGIED 314
RV ++++ Y + AH+ L W+PK +++
Sbjct: 286 RVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 325
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)
Query: 7 ILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+L+ G GFIG H +LL + ++V +D +++ ++ F G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH----------PHFHFVEG 65
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
D+ + + + +K + V+ A+ E ++P R F+ + + + + KY K
Sbjct: 66 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNP-------YGRTKQWCEEIAFDVQKADPEWR 178
+++F S++ +YG ED + P Y +KQ + + + + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQ 182
Query: 179 IILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVR 238
L R FN +G L G + I + G +L G+ + + +R
Sbjct: 183 FTLFRPFNWMGP-RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ--KRCFTDIR 239
Query: 239 DYIHVM--------DLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIK-----FCPR 285
D I + + DG I N+GN + + +E + AS +K P++ F
Sbjct: 240 DGIEALYRIIENAGNRCDGEII-NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 298
Query: 286 RVGDATAVYA-----------ATDKAHKELGWKPKYGIED 314
RV ++++ Y + AH+ L W+PK +++
Sbjct: 299 RVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 338
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)
Query: 7 ILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG 65
+L+ G GFIG H +LL + ++V +D +++ ++ F G
Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH----------PHFHFVEG 367
Query: 66 DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK 125
D+ + + + +K + V+ A+ E ++P R F+ + + + + KY K
Sbjct: 368 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 425
Query: 126 KLVFSSSATIYGQPEKIPCVEDFPYGAMNP-------YGRTKQWCEEIAFDVQKADPEWR 178
+++F S++ +YG ED + P Y +KQ + + + + + +
Sbjct: 426 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE-GLQ 484
Query: 179 IILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVR 238
L R FN +G L G + I + G +L G+ + + +R
Sbjct: 485 FTLFRPFNWMGP-RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ--KRCFTDIR 541
Query: 239 DYIHVM--------DLADGCIAYNLGNGKGISVLEMVAAFEKASGKKIPIK-----FCPR 285
D I + + DG I N+GN + + +E + AS +K P++ F
Sbjct: 542 DGIEALYRIIENAGNRCDGEII-NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 600
Query: 286 RVGDATAVYA-----------ATDKAHKELGWKPKYGIED 314
RV ++++ Y + AH+ L W+PK +++
Sbjct: 601 RVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 137/327 (41%), Gaps = 35/327 (10%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
++ LVTG G G + A LL+ G++V + +S + R+++L + +++
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS--DTRWRLRELG---IEGDIQYED 69
Query: 65 GDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNC 124
GD+ + + + + + V + A V S P + +G +L +A+ +++
Sbjct: 70 GDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP 129
Query: 125 KKLVF-SSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLR 183
+ + +S++ ++G + E+ P+ +PYG V K W I +
Sbjct: 130 ETRFYQASTSEMFGLIQAERQDENTPFYPRSPYG------------VAKLYGHW--ITVN 175
Query: 184 YFNPVGAHESGKL---GEDP-KGI---PNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSA 236
Y G H S + E P +GI + + ++ +G+ EL + D +D
Sbjct: 176 YRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVD-AKRDWGF 234
Query: 237 VRDYIHVMDLA---DGCIAYNLGNGKGISVLEMVA-AFEKAS-GKKIPIKFCPR--RVGD 289
DY+ M L D Y + G +V +M AFE + +K P R +
Sbjct: 235 AGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAE 294
Query: 290 ATAVYAATDKAHKELGWKPKYGIEDMC 316
+ KA + LGWKP+ ++++
Sbjct: 295 VDVLLGNPAKAQRVLGWKPRTSLDELI 321
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 29/173 (16%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTG AG +G+ L +V L D + EA + ++ +LA H
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHE---EIVACDLADAQAVH--- 58
Query: 67 LRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFR-YFDNNLIGTINLYQAMAKYNCK 125
DL K + +IH G + SV+ P+ N+IG NLY+A
Sbjct: 59 -----DLVK-----DCDGIIHLGGV-----SVERPWNDILQANIIGAYNLYEAARNLGKP 103
Query: 126 KLVFSSSA-TIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIA------FDVQ 171
++VF+SS TI P + P + YG +K + E++A FD++
Sbjct: 104 RIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIE 156
>pdb|3PXX|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|E Chain E, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|F Chain F, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
Length = 287
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 4 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLH----NSVPEAVDRVKDLAGPELAK- 58
+K +LVTGGA G A++L + G ++L D H N P A R + AG E+ K
Sbjct: 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT 69
Query: 59 --KLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAES-----------VQHPFRYF 105
K D+R++ + + ++ AV FG L V + VQ F
Sbjct: 70 GRKAYTAEVDVRDRAAVSRELAN----AVAEFGKLDVVVANAGICPLGAHLPVQAFADAF 125
Query: 106 DNNLIGTINLYQAMAKYNCKKLVFSSSATIYG 137
D + +G IN A Y ++ ++ G
Sbjct: 126 DVDFVGVINTVHAALPYLTSGASIITTGSVAG 157
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 27/167 (16%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEA-VDRVKDLAGPELAKKLEFH 63
K +LVTG AG +G V+ + L P A + R+ DL+ + A E
Sbjct: 4 KRLLVTGAAGQLGR-------------VMRERL---APMAEILRLADLSPLDPAGPNEEC 47
Query: 64 VG-DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPF-RYFDNNLIGTINLYQAMAK 121
V DL + + ++ + + + ++H G + SV+ PF + N+IG NLY+A
Sbjct: 48 VQCDLADANAVNAMVAG--CDGIVHLGGI-----SVEKPFEQILQGNIIGLYNLYEAARA 100
Query: 122 YNCKKLVFSSSA-TIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIA 167
+ ++VF+SS TI P+ D P YG +K + E +A
Sbjct: 101 HGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLA 147
>pdb|2Z1N|A Chain A, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
pdb|2Z1N|B Chain B, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
Length = 260
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
K +VT G+ +G AL+L + G +++L + A R+ L +++
Sbjct: 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVS---GAQVDIVA 64
Query: 65 GDLRNKDDLDKLFSSQK 81
GD+R D+D+LF +
Sbjct: 65 GDIREPGDIDRLFEKAR 81
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 2 ASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG-PELAKKL 60
+ + + VTG +GFIG+ ++LL+ G+ V P V +VK L P+ L
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTV----RATVRDPTNVKKVKHLLDLPKAETHL 58
Query: 61 EFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPFRYFDNNLI-----GTINL 115
DL ++ D EA+ + VA + + +N +I G + +
Sbjct: 59 TLWKADLADEGSFD--------EAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGI 110
Query: 116 YQAMAKY-NCKKLVFSSSA-TIYGQPEKIPCVEDFPYGAMNPYGRTKQ 161
++ A ++LVF+SSA T+ Q ++P ++ + M + R K+
Sbjct: 111 MKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDME-FCRAKK 157
>pdb|2WD6|A Chain A, Crystal Structure Of The Variable Domain Of The
Streptococcus Gordonii Surface Protein Sspb
pdb|2WD6|B Chain B, Crystal Structure Of The Variable Domain Of The
Streptococcus Gordonii Surface Protein Sspb
Length = 349
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 242 HVMDLADGCIAY---NLGNGKGISVLEMVAAFEKASGKKIPIKFCPRRVGDATAVYAATD 298
+M+L G + + N GNG G + + + +G+ IPI ++ + + YA +
Sbjct: 187 QLMNLTGGLVNFSSLNRGNGSGAIDKDAIESVRNFNGRYIPISGSSIKIHENNSAYADSS 246
Query: 299 KAHKELGWKPKYGIEDMCAHQWNW 322
A K LG + D + NW
Sbjct: 247 NAEKSLGARWNTSEWDTTSSPNNW 270
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 29/144 (20%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEA-VDRVKDLAGPELAKKLEFH 63
K +LVTG AG +G V+ + L P A + R+ DL+ + A E
Sbjct: 4 KRLLVTGAAGQLGR-------------VMRERL---APMAEILRLADLSPLDPAGPNEEC 47
Query: 64 VG-DLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHPF-RYFDNNLIGTINLYQAMAK 121
V DL + + ++ + + + ++H G + SV+ PF + N+IG NLY+A
Sbjct: 48 VQCDLADANAVNAMVAG--CDGIVHLGGI-----SVEKPFEQILQGNIIGLYNLYEAARA 100
Query: 122 YNCKKLVFSSSA-TI--YGQPEKI 142
+ ++VF+SS TI Y Q E++
Sbjct: 101 HGQPRIVFASSNHTIGYYPQTERL 124
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGFKVVL-IDNLHNSVPE 43
S IL+TG + +G HCAL+LL+ G +V++ H SV E
Sbjct: 26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTE 67
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 29/177 (16%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
+LVTG G + +Q G KV+ + E D EL L D
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD--------ELGDNLYIAQLD 54
Query: 67 LRNKDDLDKLFSSQKFE----AVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKY 122
+RN+ ++++ +S E ++ A A+ H D ++ M
Sbjct: 55 VRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVED---------WETMIDT 105
Query: 123 NCKKLVFSSSATIYGQPEKI--------PCVEDFPYGAMNPYGRTKQWCEEIAFDVQ 171
N K LV+ + A + G E+ +PY N YG TK + + + +++
Sbjct: 106 NNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLR 162
>pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
(Apo Form) From Fungus Cochliobolus Lunatus
pdb|3QWF|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|E Chain E, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|F Chain F, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|G Chain G, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|H Chain H, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWI|A Chain A, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|B Chain B, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|C Chain C, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|D Chain D, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWH|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
Length = 270
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEA---VDRVKDLAGPELAKKLE 61
K LVTG IG A+ L + G KVV+ N NS +A V +K L +A K
Sbjct: 19 KVALVTGSGRGIGAAVAVHLGRLGAKVVV--NYANSTKDAEKVVSEIKALGSDAIAIK-- 74
Query: 62 FHVGDLRNKDDLDKLFSSQKFEAVIHFGAL 91
D+R ++ KLF +AV HFG L
Sbjct: 75 ---ADIRQVPEIVKLFD----QAVAHFGHL 97
>pdb|4DI7|A Chain A, Structure Of A2-type Ketoreductase Of Modular Polyketide
Synthases
Length = 556
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 6 NILVTGGAGFIGTHCALQLL-QGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
LVTGG+G + H A L QG +VL+ P A + +LA E +
Sbjct: 300 TTLVTGGSGTLAPHLARWLAEQGAEHLVLVSRRGPEAPGAAELRAELA--ERGTETTLAA 357
Query: 65 GDLRNKDDLDKLFSSQKFE-----AVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAM 119
D+ ++D + L S K E V+H A + FD L + Q +
Sbjct: 358 CDITDRDAVAALLESLKAEGRTVRTVVHTAATIELHTLDATTLDDFDRVLAAKVTGAQIL 417
Query: 120 AKYNCKK-----LVFSSSATIYGQ 138
+ + +++SS+A ++G
Sbjct: 418 DELLDDEELDDFVLYSSTAGMWGS 441
>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid
Dehydrogenase (Y167f Mutated Form) From Fungus
Cochliobolus Lunatus
Length = 270
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEA---VDRVKDLAGPELAKKLE 61
K LVTG IG A+ L + G KVV+ N NS +A V +K L +A K
Sbjct: 19 KVALVTGSGRGIGAAVAVHLGRLGAKVVV--NYANSTKDAEKVVSEIKALGSDAIAIK-- 74
Query: 62 FHVGDLRNKDDLDKLFSSQKFEAVIHFGAL 91
D+R ++ KLF +AV HFG L
Sbjct: 75 ---ADIRQVPEIVKLFD----QAVAHFGHL 97
>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
Length = 264
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV 64
++ L+T G +G +LL G+ V + ++S A++ +K+ ++ ++L+F
Sbjct: 8 RHALITAGTKGLGKQVTEKLLAKGYSVTVT---YHSDTTAMETMKETY-KDVEERLQFVQ 63
Query: 65 GDLRNKDDLDKLFSSQKFEAVIHFGAL 91
D+ K+DL K+ EA+ HFG +
Sbjct: 64 ADVTKKEDLHKIVE----EAMSHFGKI 86
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 29/188 (15%)
Query: 5 KNILVTGGAGFIGTHCALQLLQ-----GGFKVVLIDNLHNSVPEAVDRVKDLAGPEL--- 56
+ +L+TG GF+G + L+LL+ G ++ +++ D PEL
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133
Query: 57 -----AKKLEFHVGDLRNKD-DLDKLFSSQKFEAVIHFGALKAVAESVQHPF-RYFDNNL 109
A +LE GD D LD+ + E V + + A P+ F N+
Sbjct: 134 FKELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLI--VDSAAXVNAFPYHELFGPNV 191
Query: 110 IGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNP-----------YGR 158
GT L + K + S+A + E ED ++P YG
Sbjct: 192 AGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYG- 250
Query: 159 TKQWCEEI 166
T +W E+
Sbjct: 251 TSKWAGEV 258
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
LVTG +G IG A L+Q G KVV ++ E K P L + DL
Sbjct: 36 LVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP---GTLIPYRCDL 92
Query: 68 RNKDDLDKLFSS 79
N++D+ +FS+
Sbjct: 93 SNEEDILSMFSA 104
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKV 31
+LVTG GF+ +H QLL+ G+KV
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
Length = 342
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKV 31
+LVTG GF+ +H QLL+ G+KV
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG-PELAKKLEFHVG 65
+ VTGG GF+G+ LL+ G+ V + + PE V L P ++KL F
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSV---NTTIRADPERKRDVSFLTNLPGASEKLHFFNA 60
Query: 66 DLRNKDDL 73
DL N D
Sbjct: 61 DLSNPDSF 68
>pdb|3TFO|A Chain A, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|B Chain B, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|C Chain C, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|D Chain D, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
Length = 264
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 1 MASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKL 60
M +K IL+TG +G IG A +L G K++L + ++D G LA+ L
Sbjct: 1 MVMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVL 60
Query: 61 EF 62
+
Sbjct: 61 DV 62
>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida
Tropicalis Peroxisomal Multifunctional Enzyme Type 2
Length = 604
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 4 EKNILVTGGAGFIGTHCALQLLQGGFKVVLID-----NLHNSVPEAVDRVKDLAGPELAK 58
+K +++TG G +G + +L+ + G KVV+ D N +A D V D E+ K
Sbjct: 8 DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVD----EIVK 63
Query: 59 KLEFHVGDLRNKDDLDKLFSSQKFEAVIHFGALKAV 94
V D N D DK+ + AV +FG + +
Sbjct: 64 NGGVAVADYNNVLDGDKIVET----AVKNFGTVHVI 95
>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUS|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUT|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUT|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUU|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
pdb|3AUU|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
Length = 269
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 4 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH 63
+K +++TGG+ +G A++ Q KVV+ N +N+ EA+D K++ E +
Sbjct: 15 DKVVVITGGSTGLGRAMAVRFGQEEAKVVI--NYYNNEEEALDAKKEV--EEAGGQAIIV 70
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAES--VQHPF-----------RYFDNNLI 110
GD+ ++D+ L + A+ FG L + + V++P + D NL
Sbjct: 71 QGDVTKEEDVVNLVQT----AIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLT 126
Query: 111 GTINLYQAMAKYNCKKLVFSSSATIYGQPEKIP 143
G + KY + + + + E IP
Sbjct: 127 GAFLGSREAIKYFVENDIKGNVINMSSVHEMIP 159
>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|C Chain C, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|D Chain D, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
Length = 269
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 4 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH 63
+K +++TGG+ +G A++ Q KVV+ N +N+ EA+D K++ E +
Sbjct: 15 DKVVVITGGSTGLGRAMAVRFGQEEAKVVI--NYYNNEEEALDAKKEV--EEAGGQAIIV 70
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAES--VQHPF-----------RYFDNNLI 110
GD+ ++D+ L + A+ FG L + + V++P + D NL
Sbjct: 71 QGDVTKEEDVVNLVQT----AIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLT 126
Query: 111 GTINLYQAMAKYNCKKLVFSSSATIYGQPEKIP 143
G + KY + + + + E IP
Sbjct: 127 GAFLGSREAIKYFVENDIKGNVINMSSVHEMIP 159
>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
pdb|3AY7|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
Length = 269
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 4 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH 63
+K +++TGG+ +G A++ Q KVV+ N +N+ EA+D K++ E +
Sbjct: 15 DKVVVITGGSTGLGRAMAVRFGQEEAKVVI--NYYNNEEEALDAKKEV--EEAGGQAIIV 70
Query: 64 VGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAES--VQHPF-----------RYFDNNLI 110
GD+ ++D+ L + A+ FG L + + V++P + D NL
Sbjct: 71 QGDVTKEEDVVNLVQT----AIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLT 126
Query: 111 GTINLYQAMAKYNCKKLVFSSSATIYGQPEKIP 143
G + KY + + + + E IP
Sbjct: 127 GAFLGSREAIKYFVENDIKGNVINMSSVHEMIP 159
>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
pdb|3IOY|B Chain B, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
Length = 319
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVK-DLAGPEL 56
+ VTGGA +G QLL G KV + D +S+ +A+ ++ + +GPE+
Sbjct: 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEV 61
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 6 NILVTGGAGFIGTHCALQL-LQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH- 63
+L+TGG G IG A +L +G ++VL P A ELA++L H
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAA---------ELAEELRGHG 311
Query: 64 ------VGDLRNKDDLDKLFSSQKFEAVIHFGAL 91
D+ +D L L ++ AV H +
Sbjct: 312 CEVVHAACDVAERDALAALVTAYPPNAVFHTAGI 345
>pdb|2C7V|A Chain A, Structure Of Trypanosoma Brucei Pteridine Reductase
(Ptr1) In Ternary Complex With Cofactor And The
Antifolate Methotrexate
pdb|2C7V|B Chain B, Structure Of Trypanosoma Brucei Pteridine Reductase
(Ptr1) In Ternary Complex With Cofactor And The
Antifolate Methotrexate
pdb|2C7V|C Chain C, Structure Of Trypanosoma Brucei Pteridine Reductase
(Ptr1) In Ternary Complex With Cofactor And The
Antifolate Methotrexate
pdb|2C7V|D Chain D, Structure Of Trypanosoma Brucei Pteridine Reductase
(Ptr1) In Ternary Complex With Cofactor And The
Antifolate Methotrexate
Length = 268
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
+VTG A IG A++L Q G++VV+ + HNS AV +L E + DL
Sbjct: 7 VVTGAAKRIGRAIAVKLHQTGYRVVI--HYHNSAEAAVSLADEL-NKERSNTAVVXQADL 63
Query: 68 RNKDDL 73
N + L
Sbjct: 64 TNSNVL 69
>pdb|2WD7|B Chain B, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066750
pdb|2WD7|C Chain C, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066750
pdb|2WD7|D Chain D, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066750
Length = 268
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
+VTG A IG A++L Q G++VV+ + HNS AV +L E + DL
Sbjct: 7 VVTGAAKRIGRAIAVKLHQTGYRVVI--HYHNSAEAAVSLADEL-NKERSNTAVVXQADL 63
Query: 68 RNKDDL 73
N + L
Sbjct: 64 TNSNVL 69
>pdb|3JQ7|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6- Phenylpteridine-2,4,7-Triamine
(Dx2)
pdb|3JQ7|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6- Phenylpteridine-2,4,7-Triamine
(Dx2)
pdb|3JQ7|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6- Phenylpteridine-2,4,7-Triamine
(Dx2)
pdb|3JQA|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-1,9-Dihydro-6h-Purine-6-Thione (Dx4)
Length = 288
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
+VTG A IG A++L Q G++VV+ + HNS AV +L E + DL
Sbjct: 27 VVTGAAKRIGRAIAVKLHQTGYRVVI--HYHNSAEAAVSLADEL-NKERSNTAVVXQADL 83
Query: 68 RNKDDL 73
N + L
Sbjct: 84 TNSNVL 89
>pdb|3JQ7|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6- Phenylpteridine-2,4,7-Triamine
(Dx2)
pdb|3JQA|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-1,9-Dihydro-6h-Purine-6-Thione (Dx4)
pdb|3JQA|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-1,9-Dihydro-6h-Purine-6-Thione (Dx4)
pdb|3JQF|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 1,3,5- Triazine-2,4,6-Triamine
(Ax2)
pdb|3JQG|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6-[(4-
Methoxybenzyl)sulfanyl]pyrimidine-2,4-Diamine (Ax6)
pdb|3JQG|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6-[(4-
Methoxybenzyl)sulfanyl]pyrimidine-2,4-Diamine (Ax6)
pdb|2YHI|A Chain A, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Wh16
pdb|2YHI|C Chain C, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Wh16
Length = 288
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
+VTG A IG A++L Q G++VV+ + HNS AV +L E + DL
Sbjct: 27 VVTGAAKRIGRAIAVKLHQTGYRVVI--HYHNSAEAAVSLADEL-NKERSNTAVVXQADL 83
Query: 68 RNKDDL 73
N + L
Sbjct: 84 TNSNVL 89
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGFKVVLIDN 36
++L+ GG GF G+ A QL + G K++L+D+
Sbjct: 8 DVLIIGG-GFAGSSAAYQLSRRGLKILLVDS 37
>pdb|2WD7|A Chain A, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066750
pdb|2WD8|A Chain A, Pteridine Reductase 1 (ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00071204
pdb|2WD8|B Chain B, Pteridine Reductase 1 (ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00071204
pdb|2WD8|C Chain C, Pteridine Reductase 1 (ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00071204
pdb|2WD8|D Chain D, Pteridine Reductase 1 (ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00071204
pdb|2VZ0|A Chain A, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066641
pdb|2VZ0|B Chain B, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066641
pdb|2VZ0|C Chain C, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066641
pdb|2VZ0|D Chain D, Pteridine Reductase 1 (Ptr1) From Trypanosoma Brucei In
Complex With Nadp And Ddd00066641
Length = 268
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
+VTG A IG A++L Q G++VV+ + HNS AV +L E + DL
Sbjct: 7 VVTGAAKRIGRAIAVKLHQTGYRVVI--HYHNSAEAAVSLADEL-NKERSNTAVVCQADL 63
Query: 68 RNKDDL 73
N + L
Sbjct: 64 TNSNVL 69
>pdb|3BMC|A Chain A, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Substrate (Folate)
pdb|3BMN|A Chain A, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax3)
pdb|3BMO|B Chain B, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax4)
pdb|3BMQ|A Chain A, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax5)
pdb|3BMQ|D Chain D, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax5)
pdb|3JQ8|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6,7,7-
Trimethyl-7,8-Dihydropteridine-2,4-Diamine (Dx3)
pdb|3JQ8|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6,7,7-
Trimethyl-7,8-Dihydropteridine-2,4-Diamine (Dx3)
pdb|3JQ8|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6,7,7-
Trimethyl-7,8-Dihydropteridine-2,4-Diamine (Dx3)
pdb|3JQ9|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-6-(1,3-Benzodioxol-5-Yl)-4-Oxo-4,7-
Dihydro-3h-Pyrrolo[2,3-D]pyrimidine-5-Carbonitrile
(Ax1)
pdb|3JQ9|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-6-(1,3-Benzodioxol-5-Yl)-4-Oxo-4,7-
Dihydro-3h-Pyrrolo[2,3-D]pyrimidine-5-Carbonitrile
(Ax1)
pdb|3JQB|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-5-(2-Phenylethyl)-3,7-Dihydro-4h-
Pyrrolo[2,3-D]pyrimidin-4-One (Dx6)
pdb|3JQD|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-4-Oxo-6-Phenyl-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Dx7)
pdb|3JQD|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-4-Oxo-6-Phenyl-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Dx7)
pdb|3JQD|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-4-Oxo-6-Phenyl-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Dx7)
pdb|3JQD|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-4-Oxo-6-Phenyl-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Dx7)
pdb|3GN1|A Chain A, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00067116)
pdb|3GN1|B Chain B, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00067116)
pdb|3GN1|C Chain C, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00067116)
pdb|3GN1|D Chain D, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00067116)
pdb|2YHU|A Chain A, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Whf30
pdb|2YHU|B Chain B, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Whf30
pdb|2YHU|C Chain C, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Whf30
pdb|2YHU|D Chain D, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Whf30
Length = 288
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDL 51
+VTG A IG A++L Q G++VV+ + HNS AV +L
Sbjct: 27 VVTGAAKRIGRAIAVKLHQTGYRVVI--HYHNSAEAAVSLADEL 68
>pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|A Chain A, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|D Chain D, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|C Chain C, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|F Chain F, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|E Chain E, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|H Chain H, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|G Chain G, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
Length = 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 80/224 (35%), Gaps = 45/224 (20%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG--PELAKKLEF 62
K ++TG G IG + L + G +VVL D +PE DLAG + +
Sbjct: 12 KVAIITGACGGIGLETSRVLARAGARVVLAD-----LPE-----TDLAGAAASVGRGAVH 61
Query: 63 HVGDLRNKDDLDKLFSSQKFEAVIHFGALKAVAESVQHP-----------FRYFDNNLIG 111
HV DL N+ + L + FG L V + H +D+
Sbjct: 62 HVVDLTNEVSVRALIDFT----IDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTV 117
Query: 112 TINLYQAMAKYNCKKLVFS--------SSAT---IYGQPEKIPC----VEDFPYGAMNPY 156
M KY +L+ + SSAT Y C +E Y
Sbjct: 118 NARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQY 177
Query: 157 GRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGA--HESGKLGE 198
GR C IA + + P + L + + A H +G++GE
Sbjct: 178 GRHGVRCNAIAPGLVRT-PRLEVGLPQPIVDIFATHHLAGRIGE 220
>pdb|3BMC|B Chain B, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Substrate (Folate)
pdb|3BMC|C Chain C, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Substrate (Folate)
pdb|3BMC|D Chain D, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Substrate (Folate)
pdb|3BMN|B Chain B, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax3)
pdb|3BMN|C Chain C, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax3)
pdb|3BMN|D Chain D, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax3)
pdb|3BMO|A Chain A, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax4)
pdb|3BMO|C Chain C, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax4)
pdb|3BMO|D Chain D, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax4)
pdb|3BMQ|B Chain B, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax5)
pdb|3BMQ|C Chain C, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Compound Ax5)
pdb|3JQ6|A Chain A, Crystal Structure Of Pteridine Reductase 1 (ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(nadp+) And Inhibitor 6,7-
Bis(1-methylethyl)pteridine-2,4-diamine (dx1)
pdb|3JQ6|B Chain B, Crystal Structure Of Pteridine Reductase 1 (ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(nadp+) And Inhibitor 6,7-
Bis(1-methylethyl)pteridine-2,4-diamine (dx1)
pdb|3JQ6|C Chain C, Crystal Structure Of Pteridine Reductase 1 (ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(nadp+) And Inhibitor 6,7-
Bis(1-methylethyl)pteridine-2,4-diamine (dx1)
pdb|3JQ6|D Chain D, Crystal Structure Of Pteridine Reductase 1 (ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(nadp+) And Inhibitor 6,7-
Bis(1-methylethyl)pteridine-2,4-diamine (dx1)
pdb|3JQ8|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6,7,7-
Trimethyl-7,8-Dihydropteridine-2,4-Diamine (Dx3)
pdb|3JQ9|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-6-(1,3-Benzodioxol-5-Yl)-4-Oxo-4,7-
Dihydro-3h-Pyrrolo[2,3-D]pyrimidine-5-Carbonitrile
(Ax1)
pdb|3JQ9|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-6-(1,3-Benzodioxol-5-Yl)-4-Oxo-4,7-
Dihydro-3h-Pyrrolo[2,3-D]pyrimidine-5-Carbonitrile
(Ax1)
pdb|3JQA|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-1,9-Dihydro-6h-Purine-6-Thione (Dx4)
pdb|3JQB|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-5-(2-Phenylethyl)-3,7-Dihydro-4h-
Pyrrolo[2,3-D]pyrimidin-4-One (Dx6)
pdb|3JQB|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-5-(2-Phenylethyl)-3,7-Dihydro-4h-
Pyrrolo[2,3-D]pyrimidin-4-One (Dx6)
pdb|3JQB|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor
2-Amino-5-(2-Phenylethyl)-3,7-Dihydro-4h-
Pyrrolo[2,3-D]pyrimidin-4-One (Dx6)
pdb|3JQC|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-Bromo-4-Oxo-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Ju2)
pdb|3JQC|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-Bromo-4-Oxo-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Ju2)
pdb|3JQC|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-Bromo-4-Oxo-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Ju2)
pdb|3JQC|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-Bromo-4-Oxo-4,7-Dihydro-3h-Pyrrolo[2,
3-D]pyrimidine-5- Carbonitrile (Ju2)
pdb|3JQE|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-(4-Methoxyphenyl)-4-Oxo-4,
7-Dihydro-3h-Pyrrolo[2,3- D]pyrimidine-5-Carbonitrile
(Dx8)
pdb|3JQE|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-(4-Methoxyphenyl)-4-Oxo-4,
7-Dihydro-3h-Pyrrolo[2,3- D]pyrimidine-5-Carbonitrile
(Dx8)
pdb|3JQE|C Chain C, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-(4-Methoxyphenyl)-4-Oxo-4,
7-Dihydro-3h-Pyrrolo[2,3- D]pyrimidine-5-Carbonitrile
(Dx8)
pdb|3JQE|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 2-
Amino-6-(4-Methoxyphenyl)-4-Oxo-4,
7-Dihydro-3h-Pyrrolo[2,3- D]pyrimidine-5-Carbonitrile
(Dx8)
pdb|3JQF|A Chain A, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 1,3,5- Triazine-2,4,6-Triamine
(Ax2)
pdb|3JQF|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 1,3,5- Triazine-2,4,6-Triamine
(Ax2)
pdb|3JQF|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 1,3,5- Triazine-2,4,6-Triamine
(Ax2)
pdb|3JQG|B Chain B, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6-[(4-
Methoxybenzyl)sulfanyl]pyrimidine-2,4-Diamine (Ax6)
pdb|3JQG|D Chain D, Crystal Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor 6-[(4-
Methoxybenzyl)sulfanyl]pyrimidine-2,4-Diamine (Ax6)
pdb|3GN2|A Chain A, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00066730)
pdb|3GN2|B Chain B, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00066730)
pdb|3GN2|C Chain C, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00066730)
pdb|3GN2|D Chain D, Structure Of Pteridine Reductase 1 (Ptr1) From
Trypanosoma Brucei In Ternary Complex With Cofactor
(Nadp+) And Inhibitor (Ddd00066730)
pdb|3MCV|A Chain A, Structure Of Ptr1 From Trypanosoma Brucei In Ternary
Complex With 2,4-
Diamino-5-[2-(2,5-Dimethoxyphenyl)ethyl]thieno[2,
3-D]-Pyrimidine And Nadp+
pdb|3MCV|B Chain B, Structure Of Ptr1 From Trypanosoma Brucei In Ternary
Complex With 2,4-
Diamino-5-[2-(2,5-Dimethoxyphenyl)ethyl]thieno[2,
3-D]-Pyrimidine And Nadp+
pdb|3MCV|C Chain C, Structure Of Ptr1 From Trypanosoma Brucei In Ternary
Complex With 2,4-
Diamino-5-[2-(2,5-Dimethoxyphenyl)ethyl]thieno[2,
3-D]-Pyrimidine And Nadp+
pdb|3MCV|D Chain D, Structure Of Ptr1 From Trypanosoma Brucei In Ternary
Complex With 2,4-
Diamino-5-[2-(2,5-Dimethoxyphenyl)ethyl]thieno[2,
3-D]-Pyrimidine And Nadp+
pdb|2X9G|A Chain A, High Resolution Structure Of Tbptr1 In Complex With
Pemetrexed
pdb|2X9G|B Chain B, High Resolution Structure Of Tbptr1 In Complex With
Pemetrexed
pdb|2X9G|C Chain C, High Resolution Structure Of Tbptr1 In Complex With
Pemetrexed
pdb|2X9G|D Chain D, High Resolution Structure Of Tbptr1 In Complex With
Pemetrexed
pdb|2X9V|A Chain A, High Resolution Structure Of Tbptr1 With Trimetrexate
pdb|2X9V|B Chain B, High Resolution Structure Of Tbptr1 With Trimetrexate
pdb|2X9V|C Chain C, High Resolution Structure Of Tbptr1 With Trimetrexate
pdb|2X9V|D Chain D, High Resolution Structure Of Tbptr1 With Trimetrexate
pdb|2X9N|A Chain A, High Resolution Structure Of Tbptr1 In Complex With
Cyromazine
pdb|2X9N|B Chain B, High Resolution Structure Of Tbptr1 In Complex With
Cyromazine
pdb|2X9N|C Chain C, High Resolution Structure Of Tbptr1 In Complex With
Cyromazine
pdb|2X9N|D Chain D, High Resolution Structure Of Tbptr1 In Complex With
Cyromazine
pdb|2YHI|B Chain B, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Wh16
pdb|2YHI|D Chain D, Trypanosoma Brucei Ptr1 In Complex With Inhibitor Wh16
Length = 288
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
+VTG A IG A++L Q G++VV+ + HNS AV +L E + DL
Sbjct: 27 VVTGAAKRIGRAIAVKLHQTGYRVVI--HYHNSAEAAVSLADEL-NKERSNTAVVCQADL 83
Query: 68 RNKDDL 73
N + L
Sbjct: 84 TNSNVL 89
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 6 NILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDL-------AGPELAK 58
+++V GG G G AL L + G KV+++D + V + V RV + +G EL +
Sbjct: 3 DVIVVGG-GPSGLSAALFLARAGLKVLVLDGGRSKV-KGVSRVPNYPGLLDEPSGEELLR 60
Query: 59 KLEFH 63
+LE H
Sbjct: 61 RLEAH 65
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 4 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFH 63
+K LVTG IG AL+L++ GF V + D + + G +A K++
Sbjct: 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVS 61
Query: 64 VGDLRNKDDLDKLFSS 79
D D++F++
Sbjct: 62 --------DRDQVFAA 69
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 12 GAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDR-VKDLAGPELAKKLEFHVGDLRNK 70
GAG+IG A + G +VVLID + + DR + DL +AK +E H L
Sbjct: 201 GAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDL----MAKNMEEHGIQLAFG 256
Query: 71 DDLDKLFSSQKFEAVI 86
+ + ++ + K E +I
Sbjct: 257 ETVKEVAGNGKVEKII 272
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 12 GAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDR-VKDLAGPELAKKLEFHVGDLRNK 70
GAG+IG A + G +VVLID + + DR + DL +AK +E H L
Sbjct: 201 GAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDL----MAKNMEEHGIQLAFG 256
Query: 71 DDLDKLFSSQKFEAVI 86
+ + ++ + K E +I
Sbjct: 257 ETVKEVAGNGKVEKII 272
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
IL+ GG G+IG H L+ G + ++S +D + L + +L+ H
Sbjct: 10 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKL 69
Query: 67 LRNKDDLDKLFSSQKFEAVI-HFGALKAV 94
+ +D + S+ F ++ F L+A+
Sbjct: 70 VELMKKVDVVISALAFPQILDQFKILEAI 98
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 4 EKNILVTG-GAGFIGTHCALQLLQGGFKVVL 33
+K +L+TG G G IG LLQGG KVV+
Sbjct: 675 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 705
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 4 EKNILVTG-GAGFIGTHCALQLLQGGFKVVL 33
+K +L+TG G G IG LLQGG KVV+
Sbjct: 675 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 705
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
IL+ GG G+IG H L+ G + ++S +D + L + +L+ H
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKL 73
Query: 67 LRNKDDLDKLFSSQKFEAVI-HFGALKAV 94
+ +D + S+ F ++ F L+A+
Sbjct: 74 VELMKKVDVVISALAFPQILDQFKILEAI 102
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 7 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGD 66
IL+ GG G+IG H L+ G + ++S +D + L + +L+ H
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKL 73
Query: 67 LRNKDDLDKLFSSQKFEAVI-HFGALKAV 94
+ +D + S+ F ++ F L+A+
Sbjct: 74 VELMKKVDVVISALAFPQILDQFKILEAI 102
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
+VTGGA IG +LL+ G VV+ + A D ++ P ++ ++
Sbjct: 22 IVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNI 81
Query: 68 RNKDDLDKLFSS 79
RN+++++ L S
Sbjct: 82 RNEEEVNNLVKS 93
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 4 EKNILVTG-GAGFIGTHCALQLLQGGFKVVL 33
+K +L+TG G G IG LLQGG KVV+
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 506
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGF-KVVLIDNLH---------NSVPEAVDRVKDLA 52
SE ++ GAG G CAL L Q G KV L+++ N P AV+ + +L
Sbjct: 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG 61
Query: 53 -GPELA 57
GP LA
Sbjct: 62 LGPALA 67
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 108 NLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIP----CVEDFPYGAMNPYGRTKQWC 163
NL+GT+ +Y A+ K+ K L F+ + E + A++PY + +
Sbjct: 191 NLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNE--- 247
Query: 164 EEIAFDVQKADPEWRIILLRYFNPVGAHESG-KLGEDPKGIPNNLMPYIQQVAVGRHP 220
AF+V D + ++F V A + G + GE +G+ L Q + G+ P
Sbjct: 248 ---AFNVSNGD----VFKWKHFWKVLAEQFGVECGEYEEGVDLKL----QDLMKGKEP 294
>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
pdb|1VL8|B Chain B, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
Length = 267
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 21/118 (17%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDL 67
LVTGG+ +G A L + G VV+ EA ++ + G E + F D+
Sbjct: 25 LVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVE---TMAFRC-DV 80
Query: 68 RNKDDLDKLFSSQKFEAVIHFGALKAVAESV----QHPFRYF---------DNNLIGT 112
N +++ KL + K + FG L V + +HP F + NL GT
Sbjct: 81 SNYEEVKKLLEAVKEK----FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGT 134
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
Phzs
Length = 402
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 3 SEKNILVTGGAGFIGTHCALQLLQGGF-KVVLIDNLH---------NSVPEAVDRVKDLA 52
SE ++ GAG G CAL L Q G KV L+++ N P AV+ + +L
Sbjct: 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG 61
Query: 53 -GPELA 57
GP LA
Sbjct: 62 LGPALA 67
>pdb|2WMI|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen.
pdb|2WMJ|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen.
pdb|2WMJ|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen
Length = 606
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 201 KGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAYNLGNGKG 260
+ IP++L PY + HP+ D P +DG+A Y H+++ A + G +
Sbjct: 67 ENIPDDLKPY---TVIQLHPD------DLPKRDGAARDFYEHMLEEAAKYVNPKTGKNEP 117
Query: 261 ISVLEMV 267
I V+ V
Sbjct: 118 IPVILTV 124
>pdb|2WMK|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen.
pdb|2WMK|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen
Length = 606
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 201 KGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAYNLGNGKG 260
+ IP++L PY + HP+ D P +DG+A Y H+++ A + G +
Sbjct: 67 ENIPDDLKPY---TVIQLHPD------DLPKRDGAARDFYEHMLEEAAKYVNPKTGKNEP 117
Query: 261 ISVLEMV 267
I V+ V
Sbjct: 118 IPVILTV 124
>pdb|2WMI|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen
Length = 606
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 201 KGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGCIAYNLGNGKG 260
+ IP++L PY + HP+ D P +DG+A Y H+++ A + G +
Sbjct: 67 ENIPDDLKPY---TVIQLHPD------DLPKRDGAARDFYEHMLEEAAKYVNPKTGKNEP 117
Query: 261 ISVLEMV 267
I V+ V
Sbjct: 118 IPVILTV 124
>pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus
Length = 571
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 20 CALQLLQGGFKVVL----IDNLHNSVPEAVDRVKDLAGPE 55
+Q+ + G KV++ ++N+ S+PE V+RVK+ PE
Sbjct: 265 ARVQVHKNGNKVLIYSRRLENVTKSIPEVVERVKEALKPE 304
>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|B Chain B, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|C Chain C, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|D Chain D, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|E Chain E, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|F Chain F, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|G Chain G, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|H Chain H, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
Length = 262
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKD 50
K LVTG G IG AL+L + G + L+D ++ +A V++
Sbjct: 8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE 53
>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181
pdb|3AWD|B Chain B, Crystal Structure Of Gox2181
pdb|3AWD|C Chain C, Crystal Structure Of Gox2181
pdb|3AWD|D Chain D, Crystal Structure Of Gox2181
Length = 260
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 8 LVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVK 49
+VTGGA IG C L + G +V++ D +AV+ ++
Sbjct: 17 IVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLR 58
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 4 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG 53
+K +LV G AG +G A L+ G + VL+ N + AV+ +DL G
Sbjct: 167 DKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVAN--RTYERAVELARDLGG 213
>pdb|3GED|A Chain A, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GED|B Chain B, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GEG|A Chain A, Fingerprint And Structural Analysis Of A Scor Enzyme
With Its Bound Cofactor From Clostridium Thermocellum
pdb|3GEG|B Chain B, Fingerprint And Structural Analysis Of A Scor Enzyme
With Its Bound Cofactor From Clostridium Thermocellum
Length = 247
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 5 KNILVTGGAGFIGTHCALQLLQGGFKVVLID 35
+ ++VTGG IG L L+ G KV ID
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFID 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,179,637
Number of Sequences: 62578
Number of extensions: 500539
Number of successful extensions: 1596
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 169
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)