BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019798
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CDF7|EXD1_MOUSE Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus
GN=Exd1 PE=2 SV=1
Length = 570
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 153 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILK 212
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 213 VIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA 272
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
PRY + + E+ + R+ +++P+ W RPL +++ A + +
Sbjct: 273 PRY--LFFLEERQKRI--QENPEIWLTRPLPPSLLKILALETTY 312
>sp|Q8NHP7|EXD1_HUMAN Exonuclease 3'-5' domain-containing protein 1 OS=Homo sapiens
GN=EXD1 PE=2 SV=4
Length = 514
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>sp|Q6NRD5|EXD1_XENLA Exonuclease 3'-5' domain-containing protein 1 OS=Xenopus laevis
GN=exd1 PE=2 SV=1
Length = 444
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-ACKPALESSYITK 105
+ Q VI G ++CRHG L +Q A +YL D + G V K + LE I K
Sbjct: 118 QNQKVISIGAVGQNICRHGKLSWLQFATRSRVYLFDVLVLGSKVFKNGLQMVLEDKGILK 177
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
VIHDC+ + L Q+GI L+NV DTQ+
Sbjct: 178 VIHDCRWLGDILSHQYGIILNNVFDTQVG 206
>sp|Q0P3U3|EXD1_DANRE Exonuclease 3'-5' domain-containing protein 1 OS=Danio rerio
GN=exd1 PE=2 SV=1
Length = 378
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD-AIQGGETVVKACKPALESSYITK 105
+ Q VIG + LC +Q+A +YL D + GG LE+++I K
Sbjct: 132 QEQDVIGIGADVYGQSGQERLCWLQVATKKVVYLFDILLLGGPAFKNGLSMILENTHILK 191
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLL 158
V+HDC+ + L +F ++L NV DTQ+A L+ E PD S LL
Sbjct: 192 VLHDCRCITRCLRTEFRVQLTNVFDTQVAELLLFFNESGGFLPDRPASLPELL 244
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 286 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 338
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 339 IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 397
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 398 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 438
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 439 DDTHYLLYIYDRMRLEL 455
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + +K + + I KV H ++D E +Y G+
Sbjct: 62 LCLIQLASPDTTVLIDPI-SQDIDLKPFFDLMVNKKIVKVFHAARQDIETIYHLGGVIPS 120
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA S+ D IS+ ++ R G YQ + R W+
Sbjct: 121 PLFDTQIAGSIC--------GFGDSISYDQIVQ--RCTG--YQLDKSSRF------TDWS 162
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
+RPL+E + A DV +L +Y + K+L N+++ W
Sbjct: 163 FRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHW 200
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 305 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 413 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 27/158 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL + + ++DA G + + +TKV H C++D E +FG
Sbjct: 48 LCVVQLGGANDVAVIDAQAEGLDLAP-LGALFANPAVTKVFHACRQDIEIFLLKFGAVPA 106
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ DTQ+A + +Q G Y + V LA R + + +F
Sbjct: 107 PLFDTQVAAMVAGFGDQVG-------YDTLVSSLAGGR---------------IDKAHRF 144
Query: 185 --WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W+ RPL+ + AA DV +L +Y + +L ++
Sbjct: 145 SDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTREG 182
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 19/154 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA D + +VD + G + L+ + KV H ++D E + FG
Sbjct: 50 LCLVQLAGQDEVVVVDTLAPGIDLAP-LGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPA 108
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D + + L+A I + W+
Sbjct: 109 ALFDTQVAAMVA--------GFGDQVGYDNLVASLTGAHIDKAHRF----------SDWS 150
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
RPL+E + AA DV L +Y ++++L ++
Sbjct: 151 ARPLSEAQIAYAAADVTHLRTVYQLLLERLEREG 184
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PD +VDA+ G +K + + + KV H ++D E ++ Q GI H
Sbjct: 39 LCVVQMASPDEAVVVDALAEG-IDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGIIPH 97
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 98 PIFDTQVA 105
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 19 GKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDA 77
K D VPI + T +++L + + + ++ I D E D +G +C+MQ++ +
Sbjct: 205 SKSWDDSVPIWVDT-STELESMLEDLKNTKE--IAVDLEHHDYRSYYGIVCLMQISTRER 261
Query: 78 IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSL 137
YLVD ++ E + + I KV H D L G+ + + DT A
Sbjct: 262 DYLVDTLKLREN-LHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKA 320
Query: 138 IEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
I G R Y+ +F +Y W RPL++ M
Sbjct: 321 I----GLPRHSLAYLLENFANFKTSKKYQLAD-----------------WRIRPLSKPMT 359
Query: 196 RAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY-CRCFCINENDYVDWPPLPPVPD- 253
A D FL IY + KL + + + G LY R +Y + PL P +
Sbjct: 360 AYARADTHFLLNIYDQLRNKLIESN----KLAGVLYESRNVAKRRFEYSKYRPLTPSSEV 415
Query: 254 YLIVEGDVPEEEILSILDVPPGK 276
Y +E + P + ++ ++PP +
Sbjct: 416 YSPIEKESPWKILMYQYNIPPER 438
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 75 LEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 117
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 118 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 174
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 175 LSEEKRAWLLEDGAELVANLC-RESD 199
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGG 87
H +T+ S+L + R IG D E + + L ++Q+A + I L+D + G
Sbjct: 3 HWITHPSELTDRL---QAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPG 59
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS 147
+ A K L ++ I KV+H D G+ + DTQIA +L G
Sbjct: 60 --MNAALKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-- 115
Query: 148 PDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207
Y V G + E R D W RPL+ + AADDVR+L
Sbjct: 116 ---YQKLVQ-----EVTGTLLTKGE-----TRSD---WMRRPLSPSQLEYAADDVRYLFA 159
Query: 208 IYHNMMKKLNQQS 220
I+ + ++L +Q+
Sbjct: 160 IHDELTRRLTEQN 172
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103
++ Q + D E V + L ++QL + + L+D + E + L+ I
Sbjct: 14 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTITEWA--PFQALLQDQNI 71
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 72 TKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HPLS 111
Query: 164 CGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
CG + + V L + W RPLTE AA DV +L I H +M+++ +
Sbjct: 112 CGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW 171
Query: 222 WYLAVRGALYCRCFCINENDYVD 244
A+ CR + +D
Sbjct: 172 LTAAIN---ECRLMTQRRGEVLD 191
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL D + ++D + E + L + KV H C++D E +FG
Sbjct: 50 LCVVQLGGADCVAVIDTL-APELDLAPVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQ 108
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D + + L++ I + W+
Sbjct: 109 PMFDTQVAAMVA--------GFGDQVGYDTLVSSLTGGHIDKAHRF----------SDWS 150
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
RPL++ + AA DV L +Y + +L ++
Sbjct: 151 RRPLSQAQIDYAAADVTHLRGVYETLRDRLEKE 183
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSAPRSSWKERILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P + L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>sp|Q9Y6M1|IF2B2_HUMAN Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens
GN=IGF2BP2 PE=1 SV=2
Length = 599
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 262 PEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PDKVFIIGPVK 318
PE+EI+++ +P +G IIG++G+ I + A I I A+GP V I GP +
Sbjct: 425 PEQEIVNLF-IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 483
Query: 319 QVRKAEAMLRGRMLE 333
KA+ + G++ E
Sbjct: 484 AQFKAQGRIFGKLKE 498
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
+TK +H D E FG+ VDTQI + + + P Y F L+AD
Sbjct: 75 VTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGK-------PLSY-GFAALVAD-- 124
Query: 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
Y ++ + E R D W RPL+E + AA DV +L + ++++ W
Sbjct: 125 YMQVTLDKSES-----RTD---WLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWW 176
Query: 223 YLAVRGALYCRCFCINEND 241
A+ CR C + D
Sbjct: 177 EAALDE---CRQLCQRKQD 192
>sp|Q5RB68|IF2B2_PONAB Insulin-like growth factor 2 mRNA-binding protein 2 OS=Pongo abelii
GN=IGF2BP2 PE=2 SV=1
Length = 556
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 262 PEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PDKVFIIGPVK 318
PE+EI+++ +P +G IIG++G+ I + A I I A+GP V I GP +
Sbjct: 382 PEQEIVNLF-IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 440
Query: 319 QVRKAEAMLRGRMLE 333
KA+ + G++ E
Sbjct: 441 AQFKAQGRIFGKLKE 455
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 13 LSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQL 72
+S+ D +D PI + T SQL E + +++ + + R G +C+MQ+
Sbjct: 204 MSNPIDTGSVDETEPIWVST-ESQLSDMLKELQNSKEIAVDLEHHDYRSFR-GFVCLMQI 261
Query: 73 AFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ 132
+ + ++VD ++ ++A + I KV H D L FG+ + N+ DT
Sbjct: 262 SNREKDWIVDTLELR-EELEALNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTY 320
Query: 133 IAYSLIE-EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLT 191
A ++ E G ++F LL +YC ++ ++ W RPL
Sbjct: 321 YATKVLGFEGHG--------LAF--LLQ--KYCDYDADKRYQM--------ADWRIRPLP 360
Query: 192 ELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
M++ A D +L YI+ ++ +L +S
Sbjct: 361 REMLKYAQSDTHYLLYIWDHLRNELISKS 389
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 96/268 (35%), Gaps = 53/268 (19%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E V + L ++QL + + L+D + G T K L ITK +H
Sbjct: 24 AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSITKFLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
D E FG ++DTQI + GR S F ++ + Y G++
Sbjct: 82 GSEDLEVFLNVFGELPQPLIDTQILAAFC----GRPMS----WGFASMVEE--YSGVTLD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
+ E R D W RPLTE AA DV +L I +M + + S W A
Sbjct: 132 KSES-----RTD---WLARPLTERQCEYAAADVWYLLPITAKLMVE-TEASGWLPAALDE 182
Query: 230 LYCRCFCINENDYV---------------------------DWPPLPPVPDYLIVEGDVP 262
CR + + V DW L V V
Sbjct: 183 --CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240
Query: 263 EEEILSILDVPPGKMGRI--IGRRGSSI 288
EE + S+ PG +G + +G GS I
Sbjct: 241 EEHLWSVARYMPGSLGELDSLGLSGSEI 268
>sp|Q5SF07|IF2B2_MOUSE Insulin-like growth factor 2 mRNA-binding protein 2 OS=Mus musculus
GN=Igf2bp2 PE=1 SV=1
Length = 592
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 262 PEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PDKVFIIGPVK 318
PE+E +S+ +P +G IIG++G+ I + A I I A+GP V I GP +
Sbjct: 418 PEQETVSLF-IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 476
Query: 319 QVRKAEAMLRGRMLE 333
KA+ + G++ E
Sbjct: 477 AQFKAQGRIFGKLKE 491
>sp|O73932|IF23A_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-A OS=Xenopus
laevis GN=igf2bp3-a PE=1 SV=1
Length = 594
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 259 GDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDK---VFIIG 315
G PE E + + +P +G IIG++G I + A I I A+GP K V I G
Sbjct: 413 GQQPESETVHLF-IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITG 471
Query: 316 PVKQVRKAEAMLRGRMLE 333
P + KA+ + G++ E
Sbjct: 472 PPEAQFKAQGRIYGKLKE 489
>sp|O57526|IF23B_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-B OS=Xenopus
laevis GN=igf2bp3-b PE=1 SV=1
Length = 593
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 259 GDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDK---VFIIG 315
G PE E + + +P +G IIG++G I + A I I A+GP K V I G
Sbjct: 412 GQQPESETVHLF-IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITG 470
Query: 316 PVKQVRKAEAMLRGRMLE 333
P + KA+ + G++ E
Sbjct: 471 PPEAQFKAQGRIYGKLKE 488
>sp|Q5ZLP8|IF2B3_CHICK Insulin-like growth factor 2 mRNA-binding protein 3 OS=Gallus
gallus GN=IGF2BP3 PE=2 SV=1
Length = 584
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 259 GDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDK---VFIIG 315
G PE E + + +P +G IIG++G I + A I I A+GP K V I G
Sbjct: 404 GQQPESETVHLF-IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITG 462
Query: 316 PVKQVRKAEAMLRGRMLE 333
P + KA+ + G++ E
Sbjct: 463 PPEAQFKAQGRIYGKLKE 480
>sp|A0LLF4|RNY_SYNFM Ribonuclease Y OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rny PE=3 SV=1
Length = 520
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 259 GDVPEEEILSILDVPPGKM-GRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIG-- 315
GD E+ +S++++P +M GRIIGR G +I AI+ S +++I P+ V + G
Sbjct: 203 GDYVAEKTVSVVNLPNEEMKGRIIGREGRNIRAIEASTGVDLII---DDTPEAVILSGFN 259
Query: 316 PVKQ 319
PV++
Sbjct: 260 PVRR 263
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA D VDA+ G + + + + KV H ++D E ++ I
Sbjct: 39 LCVVQLASADEAVAVDALASGLDLAPLFE-LMADPAVVKVFHAARQDLEIVWNLAKIIPA 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQ+A + D +S+ L+ C +S L + +F
Sbjct: 98 PLFDTQVAAMVC--------GFGDQVSYGDLV--QTVCKVS----------LDKSSRFTD 137
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W+ RPL V A DV +L IY + KL +
Sbjct: 138 WSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKE 171
>sp|A5UJS0|ECR1_METS3 Probable exosome complex RNA-binding protein 1
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0243 PE=3 SV=1
Length = 298
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 269 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG-----AKGPPDKVFIIGPVKQVRKA 323
I+D+ P K+ R+IG++GS I IK+ N +I++G KG D + + + +A
Sbjct: 143 IVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQNGLVWVKGEEDMEQLTKDIIHMIEA 202
Query: 324 EAMLRG 329
EA G
Sbjct: 203 EAHTSG 208
>sp|Q6AF49|UVRC_LEIXX UvrABC system protein C OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=uvrC PE=3 SV=1
Length = 656
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 11 IPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIM 70
IP S+D D + I V+ + + P E L P++ L D E V+
Sbjct: 455 IPESAD-DTESIYQVISRRLAYLRKEPPVEALTPANGHDLATDLDAEAVEAAERRR---K 510
Query: 71 QLAFPDAIYLVDAIQGGETVVKACKPALESSYITKV 106
+ A+P + +VD GG+ V A + ALE S ++ V
Sbjct: 511 KFAYPPNLLIVD---GGQPQVAAARRALEESGVSGV 543
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHN-VVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L++ I K++H C D E ++ +G + + D+QIA SL G +G
Sbjct: 90 LDNPNIIKLVHSCSEDLE-VFAHYGQRQPTPLFDSQIAASLCGMGHG-----------LG 137
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
C +K E R W RPLTE + AA+DV +L +Y + KL
Sbjct: 138 YAKLVETCLGEVIDKGESRT-------DWMRRPLTEAQLSYAANDVLYLYQLYPQLADKL 190
Query: 217 NQQ 219
Q
Sbjct: 191 KAQ 193
>sp|A7TT46|HEK2_VANPO Heterogeneous nuclear rnp K-like protein 2 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=HEK2 PE=3
SV=1
Length = 336
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 263 EEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILI----GGAKGPPDKVF--IIGP 316
+EE SI+ +P +G I+GR+G+ I +++ +I+I +++F I
Sbjct: 246 DEEFKSIVKIPEAYVGAIVGRQGNRIANLRKYSKTKIVIEKRASEVSDDAERIFEIISND 305
Query: 317 VKQVRKAEAMLRGRM 331
+K V AE+ML+ +
Sbjct: 306 IKNVELAESMLKKNL 320
>sp|O42254|IF2B1_CHICK Insulin-like growth factor 2 mRNA-binding protein 1 OS=Gallus
gallus GN=IGF2BP1 PE=1 SV=1
Length = 576
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 262 PEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDK---VFIIGPVK 318
PE+E + + +P +G IIG++G I + +A I I + P K V I GP +
Sbjct: 402 PEQETVHVF-IPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPE 460
Query: 319 QVRKAEAMLRGRMLE 333
KA+ + G++ E
Sbjct: 461 AQFKAQGRIYGKLKE 475
>sp|O19048|PCBP1_RABIT Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2
SV=1
Length = 356
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 276 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRMLE 333
++G IIG++G S+ I+E A I I P + + GP + KA AM+ ++ E
Sbjct: 24 EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81
>sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1
Length = 356
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 276 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRMLE 333
++G IIG++G S+ I+E A I I P + + GP + KA AM+ ++ E
Sbjct: 24 EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81
>sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2
Length = 356
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 276 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRMLE 333
++G IIG++G S+ I+E A I I P + + GP + KA AM+ ++ E
Sbjct: 24 EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81
>sp|Q5E9A3|PCBP1_BOVIN Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1
Length = 356
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 276 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRMLE 333
++G IIG++G S+ I+E A I I P + + GP + KA AM+ ++ E
Sbjct: 24 EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 105 KVIHDCKRDSEALYFQF--GIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
+V + KR+ +++ G H + I + E E SPD I+F+GLL
Sbjct: 221 EVFYSVKRNDVSIWNAMITGFATHGLATEAI--RVFSEMEAEHVSPDS-ITFLGLLTTCS 277
Query: 163 YCGISYQEKEEVRVLLRQ---DPQFWTYRPLTELMVRAA 198
+CG+ + KE ++ R+ P+ Y + +L+ RA
Sbjct: 278 HCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAG 316
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1
Length = 365
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 253 DYLIVEGDVPEEEILSILDVPPGK-MGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
D ++EG + L+I + GK +G IIG++G S+ ++E A I I P +
Sbjct: 2 DTGVIEGGL--NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERII 59
Query: 312 FIIGPVKQVRKAEAMLRGRMLE 333
+ GP + KA AM+ ++ E
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEE 81
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2
Length = 371
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 276 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAML 327
++G IIG++G ++ ++E A I I P V I GP + KA AM+
Sbjct: 56 EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
>sp|Q3A218|RNY_PELCD Ribonuclease Y OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rny PE=3 SV=1
Length = 520
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 259 GDVPEEEILSILDVPPGKM-GRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIG-- 315
GD E +S++ +P +M GRIIGR G +I AI+ + +++I P+ V I G
Sbjct: 203 GDFVAESAVSVVPLPNDEMKGRIIGREGRNIRAIEAATGIDLII---DDTPEAVIISGFN 259
Query: 316 PVKQ 319
PV++
Sbjct: 260 PVRR 263
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 OS=Mus musculus GN=Pcbp2 PE=1 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 253 DYLIVEGDVPEEEILSILDVPPGK-MGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
D ++EG + L+I + GK +G IIG++G S+ ++E A I I P +
Sbjct: 2 DTGVIEGGL--NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERII 59
Query: 312 FIIGPVKQVRKAEAMLRGRMLE 333
+ GP + KA AM+ ++ E
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEE 81
>sp|Q2LRA0|RNY_SYNAS Ribonuclease Y OS=Syntrophus aciditrophicus (strain SB) GN=rny PE=3
SV=1
Length = 521
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 259 GDVPEEEILSILDVPPGKM-GRIIGRRGSSILAIKESCNAEILI 301
GD E +S++++P +M GRIIGR G +I AI+ + ++++
Sbjct: 204 GDYVAENTVSVVNLPNDEMKGRIIGREGRNIRAIEAATGIDLIV 247
>sp|O43543|XRCC2_HUMAN DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1
Length = 280
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETV------VKACKPA 97
SS L+ + E + C H SLC++ L A Y +D + GGE+V ++ C
Sbjct: 121 SSSTHLLLTLYSLESM-FCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQC 179
Query: 98 LE 99
LE
Sbjct: 180 LE 181
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3
Length = 371
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 276 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAML 327
++G IIG++G ++ ++E A I I P V I GP + KA AM+
Sbjct: 56 EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L + + K++H C D +F ++DTQI F+GL
Sbjct: 97 LANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIM-----------------ARFLGL 139
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
++ Q+ V + W RPL+++ ++ AA DV +L +YH + K+L
Sbjct: 140 GTSAGLAKLA-QQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKEL- 197
Query: 218 QQSLWYLAVR 227
++ W AVR
Sbjct: 198 AKTPWEQAVR 207
>sp|E3GZ90|ECR1_METFV Probable exosome complex RNA-binding protein 1 OS=Methanothermus
fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24
S) GN=Mfer_0823 PE=3 SV=1
Length = 222
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIG 302
+ P K+ R+IGR+GS I +K+ N EIL+G
Sbjct: 146 ITPSKVPRVIGRKGSMIKMLKKLTNCEILLG 176
>sp|A8L6J3|RNY_FRASN Ribonuclease Y OS=Frankia sp. (strain EAN1pec) GN=rny PE=3 SV=1
Length = 533
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 257 VEGDVPEEEILSILDVPPGKM-GRIIGRRGSSILAIKESCNAEILI 301
V D E ++S+L +P +M GRIIGR G +I A + +LI
Sbjct: 214 VASDQTAESVVSVLHLPSDEMKGRIIGREGRNIRAFESVTGVNVLI 259
>sp|A9A5C8|ECR1_NITMS Probable exosome complex RNA-binding protein 1 OS=Nitrosopumilus
maritimus (strain SCM1) GN=Nmar_0431 PE=3 SV=1
Length = 226
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 269 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIG 302
++++ P K+ R+IG++GS I I+E+ +A + IG
Sbjct: 145 LMEISPSKVPRLIGKKGSMIQMIEEATDAAVTIG 178
>sp|A1RXQ7|ECR1_THEPD Probable exosome complex RNA-binding protein 1 OS=Thermofilum
pendens (strain Hrk 5) GN=Tpen_0582 PE=3 SV=1
Length = 237
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 268 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIG 302
+++++PP K+ R+IGRRGS + I++ ++++G
Sbjct: 155 TLVEIPPQKVPRVIGRRGSMVSMIEDLLGVKLIVG 189
>sp|O26780|ECR1_METTH Probable exosome complex RNA-binding protein 1
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_684 PE=3 SV=1
Length = 311
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGA-----KGPPD 309
+ P K+ R+IG+RGS I +KE + +I++G KG PD
Sbjct: 146 ITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGVVWIKGEPD 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,834,578
Number of Sequences: 539616
Number of extensions: 5612321
Number of successful extensions: 12470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 12380
Number of HSP's gapped (non-prelim): 127
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)