Query 019798
Match_columns 335
No_of_seqs 275 out of 1529
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 1.2E-32 4E-37 268.2 15.6 260 26-311 108-410 (428)
2 1yt3_A Ribonuclease D, RNAse D 100.0 3.4E-32 1.2E-36 262.3 16.5 250 27-298 2-285 (375)
3 2hbj_A Exosome complex exonucl 100.0 1E-30 3.5E-35 254.2 15.9 251 26-298 85-385 (410)
4 2e6m_A Werner syndrome ATP-dep 100.0 7.7E-28 2.6E-32 213.4 13.8 184 26-228 15-207 (208)
5 2kfn_A Klenow fragment of DNA 99.9 5.3E-28 1.8E-32 246.1 9.7 231 27-273 6-254 (605)
6 3pv8_A DNA polymerase I; DNA p 99.9 5E-28 1.7E-32 244.4 7.4 222 26-273 15-241 (592)
7 1vk0_A Hypothetical protein; h 99.9 5.1E-25 1.7E-29 194.8 16.5 168 29-214 22-205 (206)
8 3cym_A Uncharacterized protein 99.9 5.9E-25 2E-29 215.4 15.0 245 29-297 19-324 (440)
9 1x9m_A DNA polymerase; DNA plo 99.9 1.1E-22 3.8E-27 209.9 3.4 206 51-269 1-254 (698)
10 4dfk_A DNA polymerase I, therm 99.8 1.2E-22 4.2E-27 203.1 -3.3 175 49-273 10-189 (540)
11 1bgx_T TAQ DNA polymerase; DNA 99.6 3.6E-17 1.2E-21 170.9 0.6 172 50-273 305-481 (832)
12 3v9w_A Ribonuclease T; DEDD nu 98.7 3.9E-08 1.3E-12 87.9 9.7 158 31-225 21-230 (235)
13 2p1j_A POLIII, DNA polymerase 97.7 0.00027 9.3E-09 60.4 10.7 137 47-220 10-180 (186)
14 1wlj_A Interferon stimulated g 97.6 0.00038 1.3E-08 59.7 10.8 140 49-219 5-172 (189)
15 2f96_A Ribonuclease T; RNAse, 97.5 0.0011 3.8E-08 58.3 12.7 86 102-222 126-219 (224)
16 3mxm_B Three prime repair exon 97.4 0.00061 2.1E-08 60.9 9.6 101 89-217 103-216 (242)
17 1y97_A Three prime repair exon 97.3 0.0019 6.3E-08 57.2 11.3 95 90-217 99-211 (238)
18 3u3y_B Three prime repair exon 97.0 0.0033 1.1E-07 58.3 10.0 102 90-217 104-216 (314)
19 2gui_A DNA polymerase III epsi 96.6 0.044 1.5E-06 46.6 13.5 92 90-216 85-185 (194)
20 2qxf_A Exodeoxyribonuclease I; 96.3 0.054 1.9E-06 53.1 13.5 141 48-215 8-200 (482)
21 1vig_A Vigilin; RNA-binding pr 95.7 0.0037 1.3E-07 44.9 1.8 58 272-329 11-68 (71)
22 1w0h_A 3'-5' exonuclease ERI1; 95.6 0.13 4.5E-06 43.8 11.6 96 90-217 88-196 (204)
23 2axy_A Poly(RC)-binding protei 94.9 0.0033 1.1E-07 45.3 -0.8 59 275-333 14-72 (73)
24 1zbh_A 3'-5' exonuclease ERI1; 94.9 0.31 1E-05 44.5 12.3 97 90-218 156-265 (299)
25 1zzk_A Heterogeneous nuclear r 94.6 0.014 4.8E-07 42.9 2.0 61 273-333 14-76 (82)
26 1we8_A Tudor and KH domain con 94.2 0.012 4.1E-07 45.4 0.9 61 272-332 21-85 (104)
27 2cte_A Vigilin; K homology typ 94.2 0.028 9.7E-07 42.4 3.0 62 270-331 21-82 (94)
28 2ctm_A Vigilin; K homology typ 94.0 0.032 1.1E-06 42.3 3.0 61 269-329 20-81 (95)
29 1dtj_A RNA-binding neurooncolo 94.0 0.015 5E-07 42.0 1.0 60 273-332 10-74 (76)
30 1wvn_A Poly(RC)-binding protei 93.4 0.017 5.8E-07 42.4 0.4 60 273-332 13-74 (82)
31 2ctj_A Vigilin; K homology typ 93.4 0.011 3.7E-07 45.0 -0.7 61 270-330 21-82 (95)
32 2ctk_A Vigilin; K homology typ 93.1 0.021 7.3E-07 44.0 0.7 61 271-331 22-82 (104)
33 1qht_A Protein (DNA polymerase 93.1 1.8 6.3E-05 44.8 15.3 148 49-214 135-328 (775)
34 2ctl_A Vigilin; K homology typ 93.1 0.058 2E-06 41.0 3.0 59 271-330 22-84 (97)
35 1j5k_A Heterogeneous nuclear r 92.6 0.014 4.9E-07 43.6 -1.0 58 276-333 24-83 (89)
36 2p2r_A Poly(RC)-binding protei 92.5 0.017 5.9E-07 41.7 -0.7 58 275-332 14-73 (76)
37 2hh2_A KH-type splicing regula 92.4 0.056 1.9E-06 41.8 2.2 60 274-333 15-79 (107)
38 1x4m_A FAR upstream element bi 92.2 0.036 1.2E-06 41.8 0.8 58 275-332 24-85 (94)
39 1ec6_A RNA-binding protein NOV 92.0 0.021 7.2E-07 42.4 -0.8 57 275-331 12-73 (87)
40 1x4n_A FAR upstream element bi 91.9 0.02 6.7E-07 43.1 -1.0 57 276-332 25-83 (92)
41 2hh3_A KH-type splicing regula 91.6 0.052 1.8E-06 42.0 1.1 59 273-331 18-78 (106)
42 2opv_A KHSRP protein; KH domai 91.5 0.098 3.3E-06 38.5 2.5 58 272-330 20-82 (85)
43 3cg7_A CRN-4, cell death-relat 91.1 0.56 1.9E-05 43.0 7.7 97 90-215 98-208 (308)
44 2jzx_A Poly(RC)-binding protei 90.9 0.031 1E-06 46.2 -1.0 58 275-332 14-71 (160)
45 2xri_A ERI1 exoribonuclease 3; 89.5 1.6 5.4E-05 37.8 9.0 90 90-214 107-212 (224)
46 3krm_A Insulin-like growth fac 87.2 0.24 8.4E-06 40.7 2.0 60 272-331 91-154 (163)
47 1j4w_A FUSE binding protein; s 86.6 0.22 7.7E-06 41.5 1.5 58 273-330 111-173 (174)
48 2jvz_A KH type-splicing, FAR u 86.4 0.27 9.3E-06 40.4 1.9 60 273-332 9-72 (164)
49 3ikm_A DNA polymerase subunit 86.4 0.13 4.4E-06 54.4 -0.2 108 103-218 195-349 (1172)
50 2jvz_A KH type-splicing, FAR u 85.9 0.22 7.6E-06 40.9 1.1 59 273-331 98-158 (164)
51 3tr8_A Oligoribonuclease; tran 84.4 4.5 0.00016 34.1 8.7 51 90-140 88-149 (186)
52 2jzx_A Poly(RC)-binding protei 84.2 0.33 1.1E-05 39.8 1.4 59 275-333 98-159 (160)
53 3krm_A Insulin-like growth fac 83.9 0.24 8.2E-06 40.8 0.4 60 273-332 10-72 (163)
54 2dgr_A Ring finger and KH doma 82.7 0.38 1.3E-05 35.3 1.0 55 275-330 19-73 (83)
55 1noy_A Protein (DNA polymerase 81.6 4.8 0.00017 37.9 8.6 104 90-212 194-335 (388)
56 1j4w_A FUSE binding protein; s 81.2 0.22 7.6E-06 41.5 -0.8 57 275-331 12-70 (174)
57 2anr_A Neuro-oncological ventr 81.2 0.46 1.6E-05 39.7 1.1 59 275-333 113-175 (178)
58 2igi_A Oligoribonuclease; RNAs 80.9 3.9 0.00013 33.7 6.9 30 90-119 84-117 (180)
59 1zbu_A ERI-1 homolog, 3'-5' ex 80.3 4.8 0.00016 37.5 7.9 97 90-218 206-315 (349)
60 2anr_A Neuro-oncological ventr 78.3 0.34 1.2E-05 40.5 -0.7 58 275-332 15-77 (178)
61 2cpq_A FragIle X mental retard 76.7 0.34 1.2E-05 36.3 -0.9 56 271-329 20-77 (91)
62 2gbz_A Oligoribonuclease; ORN, 75.3 8.6 0.0003 32.2 7.5 20 198-217 163-182 (194)
63 2ctf_A Vigilin; K homology typ 73.1 1.5 5.1E-05 33.4 1.8 50 278-330 39-89 (102)
64 2qnd_A FMR1 protein; KH domain 70.4 0.97 3.3E-05 36.6 0.2 60 272-331 73-140 (144)
65 2yqr_A KIAA0907 protein; struc 69.7 1.6 5.6E-05 34.2 1.4 55 275-329 28-95 (119)
66 1wud_A ATP-dependent DNA helic 65.9 0.15 5.2E-06 37.9 -5.1 53 245-297 22-84 (89)
67 2e3u_A PH-DIM2P, hypothetical 58.8 3.3 0.00011 36.0 1.4 50 277-331 140-189 (219)
68 2rrd_A BLM HRDC domain, HRDC d 56.1 0.46 1.6E-05 36.2 -4.1 49 250-298 36-94 (101)
69 2kv2_A Bloom syndrome protein; 54.6 0.37 1.3E-05 35.4 -4.7 54 244-297 15-78 (85)
70 1k1g_A SF1-BO isoform; splicin 54.6 4 0.00014 32.5 1.1 54 276-329 23-95 (131)
71 2rhf_A DNA helicase RECQ; HRDC 53.4 0.31 1.1E-05 35.1 -5.2 51 245-295 14-74 (77)
72 3k59_A POL II, DNA polymerase 51.7 1E+02 0.0035 31.8 11.4 51 151-212 293-349 (786)
73 1s5j_A DNA polymerase I; repli 51.2 1.5E+02 0.0053 30.6 12.8 105 89-210 259-387 (847)
74 3n89_A Defective in GERM LINE 49.7 9.5 0.00033 35.8 3.0 51 279-329 43-102 (376)
75 1tua_A Hypothetical protein AP 48.7 6.9 0.00023 33.2 1.7 49 276-329 108-156 (191)
76 2py5_A DNA polymerase; protein 42.3 49 0.0017 32.7 7.1 65 49-119 6-72 (575)
77 3d45_A Poly(A)-specific ribonu 35.6 32 0.0011 33.5 4.5 107 96-218 270-394 (507)
78 2dgz_A Werner syndrome protein 34.9 2.5 8.7E-05 32.7 -2.9 48 250-298 36-93 (113)
79 2bl5_A MGC83862 protein, quaki 33.8 13 0.00045 29.8 1.1 54 275-329 17-97 (140)
80 4hec_A Putative uncharacterize 33.1 1.6E+02 0.0056 24.5 7.9 19 198-216 164-182 (190)
81 2qnd_A FMR1 protein; KH domain 30.4 12 0.00039 30.1 0.2 52 273-327 11-64 (144)
82 2a1r_A Poly(A)-specific ribonu 30.2 51 0.0018 31.3 4.8 106 97-218 276-399 (430)
83 3iay_A DNA polymerase delta ca 25.0 1.2E+02 0.0042 31.8 6.9 53 151-212 410-465 (919)
84 2e1f_A Werner syndrome ATP-dep 25.0 2.6 8.7E-05 32.1 -4.4 53 245-298 24-86 (103)
85 4gmj_B CCR4-NOT transcription 23.0 1.2E+02 0.004 27.2 5.5 85 99-218 147-247 (285)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=1.2e-32 Score=268.17 Aligned_cols=260 Identities=20% Similarity=0.271 Sum_probs=212.4
Q ss_pred cCeEEeCCccchhHHHhhhhccCCceEEEEEeecCCC-ccCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCce
Q 019798 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104 (335)
Q Consensus 26 ~~~~~I~t~~~L~~~~l~~~~~~~~~ia~D~E~~~~~-~~~~l~~lqla~~~~~~lid~~~~~~~~~~~Lk~lLe~~~i~ 104 (335)
.+|++|+|.+++.+ +++.+ ..+..+|||+||.+.. +.+.+|+||||+.+++|+||+..++. .+..|+++|+|+++.
T Consensus 108 ~~y~~I~t~e~L~~-~l~~L-~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~-~l~~L~~lL~dp~i~ 184 (428)
T 3saf_A 108 TPCHFISSLDELVE-LNEKL-LNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRS-DMYILNESLTDPAIV 184 (428)
T ss_dssp SCEEEECSHHHHHH-HHHHH-TTCSEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGG-GGGGGHHHHTCTTSE
T ss_pred CCcEEECCHHHHHH-HHHHH-hcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchh-hHHHHHHHHcCCCce
Confidence 67899999999997 99884 6788999999999875 78999999999988999999987743 468899999999999
Q ss_pred EEEEechhcHHHHHHHcCCccceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCCC
Q 019798 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184 (335)
Q Consensus 105 KV~hd~k~D~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~ 184 (335)
||+||+|+|+++|++.+|+.+.++||||+|+|+++++ ++ ||+.|++ +|||+++++. . ..++
T Consensus 185 KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~--~~-------gL~~Lv~--~~Lg~~l~K~-~-------~~sd 245 (428)
T 3saf_A 185 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RH-------SLDHLLK--LYCNVDSNKQ-Y-------QLAD 245 (428)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS--CC-------SHHHHHH--HHHCCCCCCT-T-------TTSC
T ss_pred EEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC--CC-------CHHHHHH--HHcCCCCCcc-c-------cccc
Confidence 9999999999999778999999999999999999974 23 8999999 9999998742 2 2359
Q ss_pred CccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccH------HHHHHhhhh-ccc-----c-c-------------cc
Q 019798 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW------YLAVRGALY-CRC-----F-C-------------IN 238 (335)
Q Consensus 185 w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~------~l~~~~e~~-~~v-----L-~-------------me 238 (335)
|..|||+++|+.|||.||+++++||+.|.++|.+.|.+ .++.+.+.. .+. . . +.
T Consensus 246 W~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 325 (428)
T 3saf_A 246 WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLN 325 (428)
T ss_dssp TTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHHHHTTCCCCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHHHHHhccCCC
Confidence 99999999999999999999999999999999988751 233333321 111 1 0 00
Q ss_pred CCc------cCCCCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHhhhhhhhc
Q 019798 239 END------YVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNAEILIG 302 (335)
Q Consensus 239 ~~g------~~d~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 302 (335)
..+ ...||.-.++..+.++..+..++.++++|..+|.++. ..++++|..|+.+++.+.+.
T Consensus 326 ~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~~~---- 401 (428)
T 3saf_A 326 TQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREM---- 401 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHHTS----
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 000 1267777788899999999999999999999997753 57789999999999998543
Q ss_pred CCCCCCCcc
Q 019798 303 GAKGPPDKV 311 (335)
Q Consensus 303 ~~~~~~~~~ 311 (335)
+..+|+...
T Consensus 402 p~~~~~~~~ 410 (428)
T 3saf_A 402 PLLKSEVAA 410 (428)
T ss_dssp CCCHHHHCC
T ss_pred CCcCcchhh
Confidence 555555543
No 2
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.98 E-value=3.4e-32 Score=262.26 Aligned_cols=250 Identities=25% Similarity=0.288 Sum_probs=209.2
Q ss_pred CeEEeCCccchhHHHhhhhccCCceEEEEEeecCCC-ccCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCceE
Q 019798 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105 (335)
Q Consensus 27 ~~~~I~t~~~L~~~~l~~~~~~~~~ia~D~E~~~~~-~~~~l~~lqla~~~~~~lid~~~~~~~~~~~Lk~lLe~~~i~K 105 (335)
++.+|+|.+++.+ +++.+ ...+.++||+|+.+.. +.+.+|++|+++++.+|++|+..+. .+..|+++|+|+++.|
T Consensus 2 ~~~~I~t~~~l~~-~~~~l-~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~--~~~~L~~ll~d~~i~K 77 (375)
T 1yt3_A 2 NYQMITTDDALAS-LCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAILRDPSITK 77 (375)
T ss_dssp CCEEECSHHHHHH-HHHHH-TTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS--CCHHHHHHHHCTTSEE
T ss_pred CeEEeCCHHHHHH-HHHHH-cCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC--ChHHHHHHHcCCCceE
Confidence 5778988888886 88873 5678899999999875 6789999999998789999865442 3578999999999999
Q ss_pred EEEechhcHHHHHHHcCCccceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCCCC
Q 019798 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185 (335)
Q Consensus 106 V~hd~k~D~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w 185 (335)
|+||+|+|+.+|++.+|+.+.++||||+|+|++++. .+ .||+.|++ +|||..+.+ +. ..++|
T Consensus 78 v~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~-~~-------~~L~~L~~--~~l~~~l~K-~~-------~~sdw 139 (375)
T 1yt3_A 78 FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP-MS-------WGFASMVE--EYSGVTLDK-SE-------SRTDW 139 (375)
T ss_dssp EESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCC-TT-------CCHHHHHH--HHHCCCCCC-TT-------TTSCT
T ss_pred EEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCC-CC-------hhHHHHHH--HHcCCCCCC-Cc-------ccCCC
Confidence 999999999999766999999999999999999983 22 48999999 999988873 22 23599
Q ss_pred ccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccHHH-HHHhhhh-cccc-cccCCc---------------------
Q 019798 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL-AVRGALY-CRCF-CINEND--------------------- 241 (335)
Q Consensus 186 ~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~~l-~~~~e~~-~~vL-~me~~g--------------------- 241 (335)
..|||+++|+.|||.||+++++||+.|.++|++.|++++ |+++|++ .++. .+....
T Consensus 140 ~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (375)
T 1yt3_A 140 LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL 219 (375)
T ss_dssp TSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCCGGGGGGGSTTGGGSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhcccCCCchHHHHhccCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998 9999996 4443 322221
Q ss_pred cCCCCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc---------cccccccccHHHHHHHhhhh
Q 019798 242 YVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG---------RIIGRRGSSILAIKESCNAE 298 (335)
Q Consensus 242 ~~d~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 298 (335)
...||.-.+..++.++.....++.+.++|..+|.+.. +.++++|..++++++.+.+.
T Consensus 220 L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~ig~~~~~~~~~g~~~l~~i~~~~~~ 285 (375)
T 1yt3_A 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTL 285 (375)
T ss_dssp HHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHhC
Confidence 1256777788899999999999999999999997632 45678899999999998754
No 3
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.97 E-value=1e-30 Score=254.21 Aligned_cols=251 Identities=21% Similarity=0.254 Sum_probs=203.1
Q ss_pred cCeEEeCCccchhHHHhhhhccCCceEEEEEeecCCC-ccCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCce
Q 019798 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104 (335)
Q Consensus 26 ~~~~~I~t~~~L~~~~l~~~~~~~~~ia~D~E~~~~~-~~~~l~~lqla~~~~~~lid~~~~~~~~~~~Lk~lLe~~~i~ 104 (335)
..+.+|++.+++.+ +++.+ .....+|||+|+.+.. +.+++|++|||+.+.+|++|+..+. ..+..|+++|+|++|.
T Consensus 85 ~~~~~I~t~~~L~~-~~~~L-~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~-~~l~~L~~lL~d~~i~ 161 (410)
T 2hbj_A 85 SVPIWVDTSTELES-MLEDL-KNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLR-ENLHILNEVFTNPSIV 161 (410)
T ss_dssp CCCEEECSHHHHHH-HHHHH-TTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTT-TTGGGGHHHHTCTTSE
T ss_pred CCcEEeCCHHHHHH-HHHHH-hhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhh-hhHHHHHHHHcCCCce
Confidence 34788999888886 88874 5678899999999875 6899999999998889999976542 2356899999999999
Q ss_pred EEEEechhcHHHHHHHcCCccceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCCC
Q 019798 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184 (335)
Q Consensus 105 KV~hd~k~D~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~ 184 (335)
||+||+|+|+.+|++.+|+.+.++||||+|+|+++++ ++ ||+.|++ +|||..+++ +. ..++
T Consensus 162 KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~--~~-------~L~~L~~--~~lg~~l~K-~~-------~~sd 222 (410)
T 2hbj_A 162 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP--RH-------SLAYLLE--NFANFKTSK-KY-------QLAD 222 (410)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS--CC-------SHHHHHH--HHSCCCCCC-TT-------TTSC
T ss_pred EEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC--cc-------CHHHHHH--HHcCCCCCc-cc-------cccC
Confidence 9999999999999867999998899999999999985 23 8899999 999988763 21 2359
Q ss_pred CccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccHHHHHH-hhhh-cccc----------------cccCCc-c---
Q 019798 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR-GALY-CRCF----------------CINEND-Y--- 242 (335)
Q Consensus 185 w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~~l~~~-~e~~-~~vL----------------~me~~g-~--- 242 (335)
|..|||+++|+.|||.||+++++||+.|.++|.+.|++.++.+ .+.. .+.+ ..+... |
T Consensus 223 W~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 2hbj_A 223 WRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKIL 302 (410)
T ss_dssp TTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhhhccccccccccccccCCchhHHHHHH
Confidence 9999999999999999999999999999999999998876443 2221 1111 000011 1
Q ss_pred -----------------CCCCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHh
Q 019798 243 -----------------VDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESC 295 (335)
Q Consensus 243 -----------------~d~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~ 295 (335)
..||.-.++.++.++..+..++.++++|..+|.+.. ..++++|..++.+++.+
T Consensus 303 ~~~~~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~ 382 (410)
T 2hbj_A 303 MYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDA 382 (410)
T ss_dssp SSCSCCCSTTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 156666677789999999999999999999997742 56778999999999998
Q ss_pred hhh
Q 019798 296 NAE 298 (335)
Q Consensus 296 ~~~ 298 (335)
.+.
T Consensus 383 ~~~ 385 (410)
T 2hbj_A 383 LRN 385 (410)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 4
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.95 E-value=7.7e-28 Score=213.42 Aligned_cols=184 Identities=22% Similarity=0.200 Sum_probs=143.4
Q ss_pred cCeEEeCCccchhH---HHhhhhccCCceEEEEEeecCC---CccCcEEEEEEEeC-CceEEEEccCCChhhHHHHHHHH
Q 019798 26 VPIHIVTNASQLPA---EFLEPSSERQLVIGFDCEGVDL---CRHGSLCIMQLAFP-DAIYLVDAIQGGETVVKACKPAL 98 (335)
Q Consensus 26 ~~~~~I~t~~~L~~---~~l~~~~~~~~~ia~D~E~~~~---~~~~~l~~lqla~~-~~~~lid~~~~~~~~~~~Lk~lL 98 (335)
.++.+|+|++++.. .+++. +.....+|||+||.+. ++.++++++|+|+. +.+|+||+.... .+...|+++|
T Consensus 15 g~i~~i~~~~~~~~~~~~~~~~-l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~-~~~~~L~~lL 92 (208)
T 2e6m_A 15 GSIVYSYEASDCSFLSEDISMR-LSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMS-VFPQGLKMLL 92 (208)
T ss_dssp SEEEEECSHHHHHHHHHHHHHH-CCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCS-SCCHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHH-hccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccc-cchHHHHHHh
Confidence 46889999999883 14454 3567889999999886 35789999999985 689999886543 2457899999
Q ss_pred cCCCceEEEEechhcHHHHHHHcCCccceEee-hhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccch-hHHHHH
Q 019798 99 ESSYITKVIHDCKRDSEALYFQFGIKLHNVVD-TQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE-KEEVRV 176 (335)
Q Consensus 99 e~~~i~KV~hd~k~D~~~L~~~~gi~l~~vfD-t~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~-k~~~~~ 176 (335)
+|+.+.||+||+|+|++.|.+.+|+.+.++|| ||+|+|++++. ++ .||++|++ +|||..+.+ +...
T Consensus 93 ~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~-~~-------~~L~~L~~--~~l~~~~~K~k~~~-- 160 (208)
T 2e6m_A 93 ENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCA-ET-------WSLNGLVK--HVLGKQLLKDKSIR-- 160 (208)
T ss_dssp TCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCC-CC-------CCHHHHHH--HHHSCBCCCCHHHH--
T ss_pred cCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCC-CC-------hhHHHHHH--HHcCCCcCCCCCee--
Confidence 99999999999999999998669999988999 99999999983 23 38999999 999987753 2221
Q ss_pred HhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccHHHHHHh
Q 019798 177 LLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228 (335)
Q Consensus 177 ~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~~l~~~~ 228 (335)
.++|..|||+++|+.|||.||+++++||+.|.++|++.+.+.+..+.
T Consensus 161 -----~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~~~~~~~ 207 (208)
T 2e6m_A 161 -----CSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAE 207 (208)
T ss_dssp -----TSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred -----eCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
Confidence 25999999999999999999999999999999999998888776654
No 5
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.94 E-value=5.3e-28 Score=246.12 Aligned_cols=231 Identities=20% Similarity=0.200 Sum_probs=195.1
Q ss_pred CeEEeCCccchhHHHhhhhccCCceEEEEEeecCCC-ccCcEEEEEEEe-CCceEEEEccC--------CC-hhhHHHHH
Q 019798 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-PDAIYLVDAIQ--------GG-ETVVKACK 95 (335)
Q Consensus 27 ~~~~I~t~~~L~~~~l~~~~~~~~~ia~D~E~~~~~-~~~~l~~lqla~-~~~~~lid~~~--------~~-~~~~~~Lk 95 (335)
.|.+|++.+++.+ |++.+ .....++||+|+++++ +.++++++++++ .+..++|++.. +. .+++..|+
T Consensus 6 ~y~~I~~~~~l~~-~~~~l-~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 6 NYVTILDEETLKA-WIAKL-EKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLK 83 (605)
T ss_dssp SSEECCSHHHHHH-HHHHH-HTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHH
T ss_pred heEEecCHHHHHH-HHHhc-ccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHH
Confidence 4678888888886 88873 4568899999999986 578999999997 67778885433 11 23567899
Q ss_pred HHHcCCCceEEEEechhcHHHHHHHcCCccce-EeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHH
Q 019798 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHN-VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV 174 (335)
Q Consensus 96 ~lLe~~~i~KV~hd~k~D~~~L~~~~gi~l~~-vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~ 174 (335)
++|+++.+.||+||+|+|+.+|. .+|+.+.+ +||||+|+|+++|..++| +|+.|++ +|||....+.+.
T Consensus 84 ~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~~~~-------~L~~La~--~~Lg~~~i~~~~- 152 (605)
T 2kfn_A 84 PLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGRH-------DMDSLAE--RWLKHKTITFEE- 152 (605)
T ss_dssp HHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSCC-------SHHHHHH--HHSCCCCCCHHH-
T ss_pred HHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCCCCC-------CHHHHHH--HhcCCCcccHHH-
Confidence 99999999999999999999996 69999876 899999999999975444 8899999 998876542222
Q ss_pred HHHhcC--CCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhc-cccHHHHHHhhhh-cccc-cccCCc-cCCCCCC
Q 019798 175 RVLLRQ--DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ-QSLWYLAVRGALY-CRCF-CINEND-YVDWPPL 248 (335)
Q Consensus 175 ~~~~~~--~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~-~~l~~l~~~~e~~-~~vL-~me~~g-~~d~~~L 248 (335)
++++ ...+|..+|+ +.+..||+.||.++++||..|.++|++ .+++++|.++|+| .+|| +||.+| .+|...+
T Consensus 153 --~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l 229 (605)
T 2kfn_A 153 --IAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVL 229 (605)
T ss_dssp --HHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHH
T ss_pred --HhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHH
Confidence 2232 2237988887 678999999999999999999999999 9999999999997 8999 999999 9999999
Q ss_pred CCCCCcccccCCCCHHHHHhhhcCC
Q 019798 249 PPVPDYLIVEGDVPEEEILSILDVP 273 (335)
Q Consensus 249 ~~~~~~l~~~~~~~e~~i~~lAg~~ 273 (335)
.+++.++..++..++++|++++|..
T Consensus 230 ~~~~~~~~~~~~~l~~~i~~~~g~~ 254 (605)
T 2kfn_A 230 HNHSEELTLRLAELEKKAHEIAGEE 254 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999963
No 6
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.94 E-value=5e-28 Score=244.36 Aligned_cols=222 Identities=13% Similarity=0.061 Sum_probs=184.7
Q ss_pred cCeEEeCCccchhHHHhhhhccCCceEEEEEeecCCC-ccCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCce
Q 019798 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104 (335)
Q Consensus 26 ~~~~~I~t~~~L~~~~l~~~~~~~~~ia~D~E~~~~~-~~~~l~~lqla~~~~~~lid~~~~~~~~~~~Lk~lLe~~~i~ 104 (335)
+.+..+++.++ . ++ ....++|+|+.+.+ +.++++++++++.+++|||++.. ......|+++|+|+++.
T Consensus 15 ~~~~~~~~~~~--~-~~------~~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~--~~~l~~Lk~lLed~~i~ 83 (592)
T 3pv8_A 15 MAFTLADRVTE--E-ML------ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPET--ALADPQFVAWLGDETKK 83 (592)
T ss_dssp CCCEECSSCCG--G-GG------CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHH--HTTCHHHHHHHTCTTSE
T ss_pred hHHHHhhccch--h-hh------ccCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccch--hhHHHHHHHHHhCCCCe
Confidence 45666655443 2 31 24569999998886 68899999999987889986532 12457899999999999
Q ss_pred EEEEechhcHHHHHHHcCCccc-eEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCC
Q 019798 105 KVIHDCKRDSEALYFQFGIKLH-NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183 (335)
Q Consensus 105 KV~hd~k~D~~~L~~~~gi~l~-~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~ 183 (335)
||+||+|+|+++|. ++|+.+. .+||||+|+||++|+.++| +|++|++ +|||..+.+.+++ ++++
T Consensus 84 KV~hn~K~Dl~vL~-~~Gi~l~g~~fDTmLAAYLL~p~~~~~-------~L~~La~--~yLg~~l~~~ee~---~gkg-- 148 (592)
T 3pv8_A 84 KSMFDSKRAAVALK-WKGIELCGVSFDLLLAAYLLDPAQGVD-------DVAAAAK--MKQYEAVRPDEAV---YGKG-- 148 (592)
T ss_dssp EEESSHHHHHHHHH-HTTCCCCCEEEEHHHHHHHHCGGGCCC-------SHHHHHG--GGTCCSSCCHHHH---HCSG--
T ss_pred EEEechHHHHHHHH-HcCCCCCCccchHHHHHHHcCCCCCCC-------CHHHHHH--HHcCCCCchHHHh---cCcc--
Confidence 99999999999996 7999985 5999999999999986555 8899999 9999888754332 1211
Q ss_pred CCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccHHHHHHhhhh-cccc-cccCCc-cCCCCCCCCCCCcccccCC
Q 019798 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGD 260 (335)
Q Consensus 184 ~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~~l~~~~e~~-~~vL-~me~~g-~~d~~~L~~~~~~l~~~~~ 260 (335)
....++.++.+..|||.||+++++||+.|.++|++.+++++|.++|+| ++|| .||.+| .+|...+.+++.++..++.
T Consensus 149 ~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~~l~~~~E~pl~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~ 228 (592)
T 3pv8_A 149 AKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLG 228 (592)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhHHHHHHHHHhcCCEEECHHHHHHHHHHHHHHHH
Confidence 112244557889999999999999999999999999999999999996 9999 999999 9999999999999999999
Q ss_pred CCHHHHHhhhcCC
Q 019798 261 VPEEEILSILDVP 273 (335)
Q Consensus 261 ~~e~~i~~lAg~~ 273 (335)
.++++|++++|..
T Consensus 229 ~l~~~~~~~~g~~ 241 (592)
T 3pv8_A 229 TVEQRIYELAGQE 241 (592)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999974
No 7
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.93 E-value=5.1e-25 Score=194.84 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=132.6
Q ss_pred EEeCCccchhHHHhhhh-----ccCCceEEEEEeecCC-------Ccc--CcEEEEEEEeCCceEEEEccCCChhhHHHH
Q 019798 29 HIVTNASQLPAEFLEPS-----SERQLVIGFDCEGVDL-------CRH--GSLCIMQLAFPDAIYLVDAIQGGETVVKAC 94 (335)
Q Consensus 29 ~~I~t~~~L~~~~l~~~-----~~~~~~ia~D~E~~~~-------~~~--~~l~~lqla~~~~~~lid~~~~~~~~~~~L 94 (335)
..|++.+++.. +++.+ .....+||||+||.+. .+. +++|+||+|+++.+++|++...-...+..|
T Consensus 22 ~~v~~~~~l~~-~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~~L 100 (206)
T 1vk0_A 22 IDVGSSTDISP-YLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDL 100 (206)
T ss_dssp EECCSSCCCHH-HHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHHH
T ss_pred EEEecHHHHHH-HHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCccHHHH
Confidence 44666777775 66542 1346789999999842 233 489999999998899999831111234558
Q ss_pred HHHHcCCCceEEEEechhcHHHHHHHcCCccceEeehh-HHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccch-hH
Q 019798 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ-IAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE-KE 172 (335)
Q Consensus 95 k~lLe~~~i~KV~hd~k~D~~~L~~~~gi~l~~vfDt~-lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~-k~ 172 (335)
+.+|+|++|.||||++++|+..|++.+|+.+.++|||+ +|+..++.... ..+||+.|++ ++||+++ | |.
T Consensus 101 ~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~------~~~gL~~Lv~--~~lg~~l-K~k~ 171 (206)
T 1vk0_A 101 YRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVL------EFLGTRELAH--RVLWSDL-GQLD 171 (206)
T ss_dssp HHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGG------GGCCHHHHHH--HHHCCCC-HHHH
T ss_pred HHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCC------CCccHHHHHH--HHhCCcC-CCCC
Confidence 89999999999999999999999989999999999997 77777664211 1359999999 9999999 3 23
Q ss_pred HHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHH
Q 019798 173 EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (335)
Q Consensus 173 ~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~ 214 (335)
...+ ||.. ||+++|+.|||.||++++.||+.|.+
T Consensus 172 ~~~S-------dW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 172 SIEA-------KWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHH-------TGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-------CCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3443 9999 99999999999999999999999864
No 8
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.92 E-value=5.9e-25 Score=215.41 Aligned_cols=245 Identities=16% Similarity=0.170 Sum_probs=191.8
Q ss_pred EEeCCccchhHHHhhhhccCC-ceEEEEEeecCCC-ccCcEEEEEEEeC-CceEEEEccCCCh--hhHHHHHHHHcCCCc
Q 019798 29 HIVTNASQLPAEFLEPSSERQ-LVIGFDCEGVDLC-RHGSLCIMQLAFP-DAIYLVDAIQGGE--TVVKACKPALESSYI 103 (335)
Q Consensus 29 ~~I~t~~~L~~~~l~~~~~~~-~~ia~D~E~~~~~-~~~~l~~lqla~~-~~~~lid~~~~~~--~~~~~Lk~lLe~~~i 103 (335)
.+|+|.+++.+ +++.+ ... +.++||+|+.+.. +.+.+|++||++. +.+|+||+..... ..+..|+++|+|+
T Consensus 19 ~~I~t~e~L~~-~~~~L-~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d~-- 94 (440)
T 3cym_A 19 NVIDTLPAFRD-YCSEL-ASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGDA-- 94 (440)
T ss_dssp CEECSHHHHHH-HHHHH-HSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTTC--
T ss_pred EeeCCHHHHHH-HHHHH-HhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCCC--
Confidence 56888888886 88874 455 7899999998774 6889999999985 5589998743210 1156899999997
Q ss_pred eEEEEechhcHHHHHHHcCCccceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCC
Q 019798 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183 (335)
Q Consensus 104 ~KV~hd~k~D~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~ 183 (335)
.||+||+|+|+.+|. .+|+.+.++|||++|+|++++. ++ ||+.|++ +|||..+.+ . ...+
T Consensus 95 ~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~--~~-------gL~~L~~--~~lg~~~~K-~-------~~~s 154 (440)
T 3cym_A 95 VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLK--RF-------GLAAVTE--HFLGLTLAK-E-------HSAA 154 (440)
T ss_dssp EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCS--SC-------SHHHHHH--HHHCEECCC-C-------CTTC
T ss_pred CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCC--CC-------CHHHHHH--HHhCCCccc-c-------cccC
Confidence 699999999999996 8999999999999999999973 33 8999999 999988763 2 1235
Q ss_pred CCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccHHHHHHhh-hh----c--ccc------cccC------C--c-
Q 019798 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA-LY----C--RCF------CINE------N--D- 241 (335)
Q Consensus 184 ~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~~l~~~~e-~~----~--~vL------~me~------~--g- 241 (335)
+|..|||+++|..|||.||+++++||+.|..+|.+.|++.+..+.. .+ . +.. .+.. + +
T Consensus 155 dw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 234 (440)
T 3cym_A 155 DWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRKEHLIPWMHVSHITEVMRDRQAL 234 (440)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCCCCSSGGGCCTTGGGGTTCHHHH
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCCCchHHHHHhccccccCCCHHHH
Confidence 9999999999999999999999999999999999999988765422 11 1 111 0000 0 0
Q ss_pred -----cCCCCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc----------ccc------------------cc-cccc
Q 019798 242 -----YVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RII------------------GR-RGSS 287 (335)
Q Consensus 242 -----~~d~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~------------------~~-~~~~ 287 (335)
...|+.-.+..++.++..+..++.+.++|..+|.+.. +.. ++ +|..
T Consensus 235 ~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 314 (440)
T 3cym_A 235 AIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKPSM 314 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhhhhHHH
Confidence 1245555667789999999999999999999997642 233 55 8999
Q ss_pred HHHHHHHhhh
Q 019798 288 ILAIKESCNA 297 (335)
Q Consensus 288 ~~~~~~~~~~ 297 (335)
++.+++.+.+
T Consensus 315 ~l~~i~~~~~ 324 (440)
T 3cym_A 315 WKNIIQDALA 324 (440)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.85 E-value=1.1e-22 Score=209.94 Aligned_cols=206 Identities=15% Similarity=0.011 Sum_probs=167.1
Q ss_pred eEEEEEeecCCC-ccCcEEEEEEEe--CCceEEEEccCCChhhHHHHHHHHcCCCceEEEEec-hhcHHHHHHHc-----
Q 019798 51 VIGFDCEGVDLC-RHGSLCIMQLAF--PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC-KRDSEALYFQF----- 121 (335)
Q Consensus 51 ~ia~D~E~~~~~-~~~~l~~lqla~--~~~~~lid~~~~~~~~~~~Lk~lLe~~~i~KV~hd~-k~D~~~L~~~~----- 121 (335)
.|+||+||+++. ..++++.+|+.. .+..+++|+.... ..+..|+++|+ +.+.||+||+ |+|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~-~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~ 78 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFG-AYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLN 78 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHH-HHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHH-HHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhccc
Confidence 379999999996 568999999998 3578888765432 35788999999 8899999999 99999997443
Q ss_pred -CCccc--eEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhH--------HHHHHhc-----CC---C
Q 019798 122 -GIKLH--NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE--------EVRVLLR-----QD---P 182 (335)
Q Consensus 122 -gi~l~--~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~--------~~~~~~~-----~~---~ 182 (335)
|+.+. .+||||+|+|+++|...+| +|+.|++ +||+.++..-. ....+++ ++ .
T Consensus 79 ~Gi~l~~~~~~DTmlaayLL~p~~~~~-------~L~~La~--~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~ 149 (698)
T 1x9m_A 79 REFHLPRENCIDTLVLSRLIHSNLKDT-------DMGLLRS--GKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYV 149 (698)
T ss_dssp CCCCCCGGGEEEHHHHHHHHTTTSCCC-------TTTTSCG--GGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCccCCCCcchhHHHHHHHhCCCCCCC-------CHHHHHH--HHcccchhhhcccccccccCHHHHhCccccccccccc
Confidence 98876 4999999999999976555 7789999 89832222100 0011111 11 1
Q ss_pred --CCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccH---------------HHHHHhhhh-cccc-cccCCc-c
Q 019798 183 --QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW---------------YLAVRGALY-CRCF-CINEND-Y 242 (335)
Q Consensus 183 --~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~---------------~l~~~~e~~-~~vL-~me~~g-~ 242 (335)
.+|.. +++.+..||+.||.++++||+.|.++|.+.+++ .+|.++|++ .+|| .||.+| .
T Consensus 150 ~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~l~~~~~~~~~~~~~~~l~~~~E~pl~~vLa~ME~~Gi~ 227 (698)
T 1x9m_A 150 DGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFP 227 (698)
T ss_dssp TTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCTTSCTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHCEE
T ss_pred ccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccchhhHHHHHHHHHhHHHHHHHHHHHcCeE
Confidence 16864 568899999999999999999999999998875 789999996 8899 999999 9
Q ss_pred CCCCCCCCCCCcccccCCCCHHHHHhh
Q 019798 243 VDWPPLPPVPDYLIVEGDVPEEEILSI 269 (335)
Q Consensus 243 ~d~~~L~~~~~~l~~~~~~~e~~i~~l 269 (335)
+|...+.++...+..++..++++|+++
T Consensus 228 vD~~~l~~~~~~~~~~~~~l~~~~~~~ 254 (698)
T 1x9m_A 228 FDTKAIEELYVELAARRSELLRKLTET 254 (698)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.83 E-value=1.2e-22 Score=203.07 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=154.9
Q ss_pred CceEEEEEeecCCC-ccCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCceEEEEechhcHHHHHHHcCCccce
Q 019798 49 QLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN 127 (335)
Q Consensus 49 ~~~ia~D~E~~~~~-~~~~l~~lqla~~~~~~lid~~~~~~~~~~~Lk~lLe~~~i~KV~hd~k~D~~~L~~~~gi~l~~ 127 (335)
.+.+++|||+.+.+ +.++++++|++.++++|+++ .++..|+++|+| +.||+||+|+|+. .+|+.+..
T Consensus 10 p~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~------~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~ 77 (540)
T 4dfk_A 10 PEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP------EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPP 77 (540)
T ss_dssp CTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS------SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCB
T ss_pred CCceEEEEEecCCccCcccEEEEEEEcCCEEEEeh------hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCc
Confidence 35699999999886 78899999999988888775 257889999998 7899999999998 57888778
Q ss_pred EeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHH
Q 019798 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207 (335)
Q Consensus 128 vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~ 207 (335)
+||||+|+|+++|+ +| +|++|++ +|++. +. .+|+.||.++++
T Consensus 78 ~fDT~laAyLL~p~--~~-------~L~~La~--~yl~~-~g--------------------------k~a~~DA~~t~~ 119 (540)
T 4dfk_A 78 GDDPMLLAYLLDPS--NT-------TPEGVAR--RYGGE-WT--------------------------EEAGERAALSER 119 (540)
T ss_dssp CCCHHHHHHHHCTT--CC-------CHHHHHH--HHTSC-CC--------------------------SCHHHHHHHHHH
T ss_pred ceeHHHHHHHhCCC--CC-------CHHHHHH--HHhhh-hc--------------------------cchHHHHHHHHH
Confidence 89999999999997 45 8899999 89874 21 025689999999
Q ss_pred HHHHHHHHH-hccccHHHHHHhhhh-cccc-cccCCc-cCCCCCCCCCCCcccccCCCCHHHHHhhhcCC
Q 019798 208 IYHNMMKKL-NQQSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDVP 273 (335)
Q Consensus 208 L~~~L~~~L-~~~~l~~l~~~~e~~-~~vL-~me~~g-~~d~~~L~~~~~~l~~~~~~~e~~i~~lAg~~ 273 (335)
||..|.++| ++.+++++|.++|+| .+|| +||.+| .+|...+.+++.++..++..++++|++++|..
T Consensus 120 L~~~L~~~L~~~~~~~~~~~~iE~pl~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~ 189 (540)
T 4dfk_A 120 LFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP 189 (540)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHTHHHHHHHHHHHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999 778999999999997 8999 999999 99999999999999999999999999999863
No 11
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.62 E-value=3.6e-17 Score=170.91 Aligned_cols=172 Identities=18% Similarity=0.165 Sum_probs=144.5
Q ss_pred ceEEEEEeecCCCccCcEEEEEEEe-CCceEEEEccCCChhhHHHHHHHHcCCCceEEEEechhcHHHHHHHcCCccceE
Q 019798 50 LVIGFDCEGVDLCRHGSLCIMQLAF-PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128 (335)
Q Consensus 50 ~~ia~D~E~~~~~~~~~l~~lqla~-~~~~~lid~~~~~~~~~~~Lk~lLe~~~i~KV~hd~k~D~~~L~~~~gi~l~~v 128 (335)
..+++|+|+.+ ...+++| +++|+ +++++||++ . + ..|+++|+++.+ |+|+|+++|. .+||.+..+
T Consensus 305 ~~va~d~et~~-~~~~~l~-vg~a~~~g~a~yvp~-~---~--~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~~~ 370 (832)
T 1bgx_T 305 AFVGFVLSRKE-PMWADLL-ALAAARGGRVHRAPE-P---Y--KALRDLKEARGL-----LAKDLSVLAL-REGLGLPPG 370 (832)
T ss_dssp CCBEEECSSSC-TTTCCCC-EEECBSSSEEECCSC-H---H--HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCCBC
T ss_pred ceEEEEEecCC-cccCcee-EEEEEcCCCEEEEEC-C---H--HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccCcc
Confidence 45899999877 4456773 33776 567788744 1 1 569999999986 9999999996 799998877
Q ss_pred eehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHH
Q 019798 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYI 208 (335)
Q Consensus 129 fDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L 208 (335)
||||+|+||++|. +| +|++|+. +| |. +|. + + || .||.++++|
T Consensus 371 ~Dt~laayLl~p~--~~-------~l~~l~~--~~-gk-----------------~~~--~--~----ya-~da~~~~~l 412 (832)
T 1bgx_T 371 DDPMLLAYLLDPS--NT-------TPEGVAR--RY-GG-----------------EWT--E--E----AG-ERAALSERL 412 (832)
T ss_dssp CCHHHHHHHHCTT--CC-------STTHHHH--HH-SC-----------------CCC--S--S----HH-HHHHHHHHH
T ss_pred cCHHHHHHHcCCC--CC-------CHHHHHH--Hh-CC-----------------Cch--H--H----HH-HHHHHHHHH
Confidence 9999999999996 45 6688888 66 21 231 1 1 77 799999999
Q ss_pred HHHHHHHHh-ccccHHHHHHhhhh-cccc-cccCCc-cCCCCCCCCCCCcccccCCCCHHHHHhhhcCC
Q 019798 209 YHNMMKKLN-QQSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDVP 273 (335)
Q Consensus 209 ~~~L~~~L~-~~~l~~l~~~~e~~-~~vL-~me~~g-~~d~~~L~~~~~~l~~~~~~~e~~i~~lAg~~ 273 (335)
+..|.++|. +.+++.+|.++||| ++|| .||.+| .+|...+.+++.++..++..++++|++++|..
T Consensus 413 ~~~l~~~L~~~~~~~~l~~~iE~pl~~vl~~mE~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~ 481 (832)
T 1bgx_T 413 FANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP 481 (832)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHCBCBCTTTHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHcCeeecHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999 88999999999997 8999 999999 99999999999999999999999999999974
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.72 E-value=3.9e-08 Score=87.93 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=100.0
Q ss_pred eCCccchhHHHhhhhccCCceEEEEEeecCCC-ccCcEEEEEEEe-----CCce-------EEEEccC---C--------
Q 019798 31 VTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-----PDAI-------YLVDAIQ---G-------- 86 (335)
Q Consensus 31 I~t~~~L~~~~l~~~~~~~~~ia~D~E~~~~~-~~~~l~~lqla~-----~~~~-------~lid~~~---~-------- 86 (335)
|++.+.+.. +... +.....++||+|+++++ ...+++-|.+.. .+.. .+|.+.. +
T Consensus 21 ~~~~~~~~~-l~~~-l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~ 98 (235)
T 3v9w_A 21 MSDNAQLTG-LCDR-FRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFN 98 (235)
T ss_dssp --------C-HHHH-TTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHH
T ss_pred ccccccccC-chhc-ccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHh
Confidence 344455554 5555 36678899999999985 455655444442 1221 1233310 0
Q ss_pred --C-----------hhhHHHHHHHHcC-------CCceEEEEechhcHHHHHH---HcCCcc-----ceEeehhHHHHhh
Q 019798 87 --G-----------ETVVKACKPALES-------SYITKVIHDCKRDSEALYF---QFGIKL-----HNVVDTQIAYSLI 138 (335)
Q Consensus 87 --~-----------~~~~~~Lk~lLe~-------~~i~KV~hd~k~D~~~L~~---~~gi~l-----~~vfDt~lAayLL 138 (335)
. .+++..+.+++.+ .....|+||+++|+.+|.+ .+|+.. ..++||+.+++.+
T Consensus 99 GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~ 178 (235)
T 3v9w_A 99 GIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLA 178 (235)
T ss_dssp CCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHH
T ss_pred CCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHH
Confidence 0 1245556666652 4567899999999999853 348752 2489999999988
Q ss_pred hhccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 019798 139 EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (335)
Q Consensus 139 ~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~ 218 (335)
.+. + +|+.|++ + +|++... ....+|..||.++.+|+..|.+++.+
T Consensus 179 ~p~---~-------~L~~l~~--~-~gi~~~~----------------------~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 179 LGQ---T-------VLSKACQ--T-AGMDFDS----------------------TQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HSC---C-------SHHHHHH--H-HTCCCCT----------------------TTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCC---C-------CHHHHHH--H-cCCCCCC----------------------CCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 763 2 7888887 4 4654421 01234889999999999999999999
Q ss_pred cccHHHH
Q 019798 219 QSLWYLA 225 (335)
Q Consensus 219 ~~l~~l~ 225 (335)
.|+|++.
T Consensus 224 ~~~~~l~ 230 (235)
T 3v9w_A 224 LGGWPLS 230 (235)
T ss_dssp TTCSSCC
T ss_pred cCCcccc
Confidence 8888763
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.68 E-value=0.00027 Score=60.44 Aligned_cols=137 Identities=16% Similarity=0.116 Sum_probs=82.9
Q ss_pred cCCceEEEEEeecCCC-ccCcEEEEEEEe--CCce-----EEEEccC-CC--------------------hhhHHHHHHH
Q 019798 47 ERQLVIGFDCEGVDLC-RHGSLCIMQLAF--PDAI-----YLVDAIQ-GG--------------------ETVVKACKPA 97 (335)
Q Consensus 47 ~~~~~ia~D~E~~~~~-~~~~l~~lqla~--~~~~-----~lid~~~-~~--------------------~~~~~~Lk~l 97 (335)
.....++||+|+++++ ..++++-|.... .++. .+|.+.. +. .+++..+..+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 3457899999999886 445554333322 2321 2333221 10 1244566777
Q ss_pred HcCCCceEEEEechhcHHHHHH---HcCCcc--ceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhH
Q 019798 98 LESSYITKVIHDCKRDSEALYF---QFGIKL--HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE 172 (335)
Q Consensus 98 Le~~~i~KV~hd~k~D~~~L~~---~~gi~l--~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~ 172 (335)
+.+. ..|+||+.+|+.+|.+ .+|+.. ..++||+..+..+. ... ..+|..|++ ++|++...
T Consensus 90 l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~-------~~~L~~l~~---~~gi~~~~-- 154 (186)
T 2p1j_A 90 LEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLR-------SYSLDSVVE---KLGLGPFR-- 154 (186)
T ss_dssp SSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCS-------CCSHHHHHH---HTTCCSTT--
T ss_pred HCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcC-------CCCHHHHHH---HcCCCCCC--
Confidence 7653 5699999999998863 356654 35899987766554 222 248889887 45754321
Q ss_pred HHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 019798 173 EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220 (335)
Q Consensus 173 ~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~ 220 (335)
...|..||..+..|+..+..+.+++|
T Consensus 155 ----------------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 155 ----------------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred ----------------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 13488999999999998877665544
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.62 E-value=0.00038 Score=59.74 Aligned_cols=140 Identities=20% Similarity=0.144 Sum_probs=82.9
Q ss_pred CceEEEEEeecCCCccCcEEEEEEEe---CCceE---EEEccC-C----------C----------hhhHHHHHHHHcCC
Q 019798 49 QLVIGFDCEGVDLCRHGSLCIMQLAF---PDAIY---LVDAIQ-G----------G----------ETVVKACKPALESS 101 (335)
Q Consensus 49 ~~~ia~D~E~~~~~~~~~l~~lqla~---~~~~~---lid~~~-~----------~----------~~~~~~Lk~lLe~~ 101 (335)
...++||+|+++++....-.+++++. .++.. +|.+.. + . .+++..+..++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~- 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG- 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT-
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC-
Confidence 46899999999875332222334443 23332 343321 0 0 1345667778864
Q ss_pred CceEEEEechhcHHHHHHHcCCccceEeehhHHHHhhhh-ccCCCCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcC
Q 019798 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE-QEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ 180 (335)
Q Consensus 102 ~i~KV~hd~k~D~~~L~~~~gi~l~~vfDt~lAayLL~~-~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~ 180 (335)
...|+||+.+|+.+|...+ .-..++||+........ .... ....||..|++ +|+|++.... .
T Consensus 84 -~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~----~~~~~L~~l~~--~~lgi~~~~~--------~ 146 (189)
T 1wlj_A 84 -KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDH----CRRVSLRVLSE--RLLHKSIQNS--------L 146 (189)
T ss_dssp -SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC---------CCHHHHHH--HHTCCCCSCC--------T
T ss_pred -CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCC----CCCccHHHHHH--HHcCCCCCCC--------C
Confidence 4679999999999995322 22358999875322221 1000 01348999998 7788765410 0
Q ss_pred CCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 019798 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219 (335)
Q Consensus 181 ~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~ 219 (335)
.. .-|..||.++..|+..+.++++..
T Consensus 147 ~~-------------H~Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 147 LG-------------HSSVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp TC-------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-------------cCcHHHHHHHHHHHHHHHHHHHHh
Confidence 00 127899999999999998887654
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.53 E-value=0.0011 Score=58.28 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=60.7
Q ss_pred CceEEEEechhcHHHHHH---HcCCc---c--ceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCcccCcccchhHH
Q 019798 102 YITKVIHDCKRDSEALYF---QFGIK---L--HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173 (335)
Q Consensus 102 ~i~KV~hd~k~D~~~L~~---~~gi~---l--~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k~~ 173 (335)
....|+||+.+|+.+|.+ .+|+. . ...+||+..+..+.+. .+|..|++ ++|++....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~~----------~~L~~l~~---~~gi~~~~~-- 190 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQ----------TVLAKACQ---AAGMEFDNR-- 190 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSC----------CSHHHHHH---HTTCCCCTT--
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcCC----------CCHHHHHH---HcCCCcCCC--
Confidence 446799999999998863 35765 1 2589998877655432 27888886 457654310
Q ss_pred HHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhccccH
Q 019798 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222 (335)
Q Consensus 174 ~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~l~ 222 (335)
. ...|..||.++.+|+..+.+++.+.|.|
T Consensus 191 -------~-------------~H~Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 191 -------E-------------AHSARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp -------S-------------CCCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------C-------------CCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 0127899999999999999998876655
No 16
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.42 E-value=0.00061 Score=60.95 Aligned_cols=101 Identities=16% Similarity=0.069 Sum_probs=65.3
Q ss_pred hhHHHHHHHHcC--CCceEEEEec-hhcHHHHHH---HcCCcc--c--eEeehhHHHHhhhhcc--CC-CCCCCCcccHH
Q 019798 89 TVVKACKPALES--SYITKVIHDC-KRDSEALYF---QFGIKL--H--NVVDTQIAYSLIEEQE--GR-KRSPDDYISFV 155 (335)
Q Consensus 89 ~~~~~Lk~lLe~--~~i~KV~hd~-k~D~~~L~~---~~gi~l--~--~vfDt~lAayLL~~~~--~~-~~l~~~~~sL~ 155 (335)
+++..|..++.+ +....|+||+ .+|..+|.+ ++|+.. . .++||+..+..+.... +. ... ...+|+
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~--~~~~L~ 180 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSR--KSYSLG 180 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC--------CCCSHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCC--CCcCHH
Confidence 345566677776 1246699996 999998863 367763 2 4789998777544210 00 000 234899
Q ss_pred hhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 019798 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (335)
Q Consensus 156 ~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (335)
+|++ +|+|++... ..-|..||.++.+|+..+..++.
T Consensus 181 ~l~~--~~~gi~~~~------------------------~H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 181 SIYT--RLYWQAPTD------------------------SHTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHH--HHHSSCCSS------------------------TTSHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHH--HHhCCCCCC------------------------CcChHHHHHHHHHHHHHHHHHHH
Confidence 9998 888876531 01277899999999887766554
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=97.30 E-value=0.0019 Score=57.25 Aligned_cols=95 Identities=24% Similarity=0.242 Sum_probs=64.4
Q ss_pred hHHHHHHHHcCC--CceEEEEec-hhcHHHHHH---HcCCccc---eEeehhHHHHhhh---------hccCCCCCCCCc
Q 019798 90 VVKACKPALESS--YITKVIHDC-KRDSEALYF---QFGIKLH---NVVDTQIAYSLIE---------EQEGRKRSPDDY 151 (335)
Q Consensus 90 ~~~~Lk~lLe~~--~i~KV~hd~-k~D~~~L~~---~~gi~l~---~vfDt~lAayLL~---------~~~~~~~l~~~~ 151 (335)
+...|..++..- ....|+||+ .+|..+|.+ .+|+... .++||+..+..+. +... .
T Consensus 99 v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~-------~ 171 (238)
T 1y97_A 99 VVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQ-------G 171 (238)
T ss_dssp HHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-----------------C
T ss_pred HHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCC-------C
Confidence 345677788762 156799999 999998853 3676652 4899987766664 2222 2
Q ss_pred ccHHhhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 019798 152 ISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (335)
Q Consensus 152 ~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (335)
.+|..+++ +++|++... ...|..||..+..++..+.+++.
T Consensus 172 ~~L~~l~~--~~~gi~~~~------------------------~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 172 YSLGSLFH--RYFRAEPSA------------------------AHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp CSHHHHHH--HHHSSCCC---------------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHH--HHhCCCCcc------------------------CccHHHHHHHHHHHHHHHHHHHH
Confidence 48889987 778865421 13388999999999998876654
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=96.99 E-value=0.0033 Score=58.31 Aligned_cols=102 Identities=16% Similarity=0.069 Sum_probs=64.0
Q ss_pred hHHHHHHHHcC--CCceEEEEe-chhcHHHHHH---HcCCcc--c--eEeehhHHHHhhhhc-cCCCCCCCCcccHHhhh
Q 019798 90 VVKACKPALES--SYITKVIHD-CKRDSEALYF---QFGIKL--H--NVVDTQIAYSLIEEQ-EGRKRSPDDYISFVGLL 158 (335)
Q Consensus 90 ~~~~Lk~lLe~--~~i~KV~hd-~k~D~~~L~~---~~gi~l--~--~vfDt~lAayLL~~~-~~~~~l~~~~~sL~~L~ 158 (335)
++..|..++.+ +....|+|| +.+|..+|.+ ++|+.. . .++||+.....+... .-.........+|++|+
T Consensus 104 v~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~ 183 (314)
T 3u3y_B 104 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIY 183 (314)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHH
Confidence 34556677776 225679999 8999998863 367664 2 378998865522221 00000001235899999
Q ss_pred cCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 019798 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (335)
Q Consensus 159 ~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (335)
+ +|+|++... .+-|..||.++..|+..+.+++.
T Consensus 184 ~--~l~gi~~~~------------------------aHrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 184 T--RLYWQAPTD------------------------SHTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp H--HHHSSCCSC------------------------SSSHHHHHHHHHHHHHSSHHHHH
T ss_pred H--HhcCCCCCC------------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8 778876431 01177899999999988776653
No 19
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.60 E-value=0.044 Score=46.61 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=60.4
Q ss_pred hHHHHHHHHcCCCceEEEEechhcHHHHHH---HcCCc---c---ceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcC
Q 019798 90 VVKACKPALESSYITKVIHDCKRDSEALYF---QFGIK---L---HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160 (335)
Q Consensus 90 ~~~~Lk~lLe~~~i~KV~hd~k~D~~~L~~---~~gi~---l---~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~ 160 (335)
++..+..++.+. ..|+||+.+|+.+|.+ .+|+. + ..++||+..+..+.|.. ..+|..|++
T Consensus 85 v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~--------~~~L~~l~~- 153 (194)
T 2gui_A 85 VADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK--------RNSLDALCA- 153 (194)
T ss_dssp HHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS--------CCSHHHHHH-
T ss_pred HHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC--------CCCHHHHHH-
Confidence 445677777653 4689999999998863 35766 2 35899987666555532 238889886
Q ss_pred CcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHH
Q 019798 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (335)
Q Consensus 161 ~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L 216 (335)
++|++.... . ..-|..||.++.+|+..+..+.
T Consensus 154 --~~gi~~~~~---------~-------------~H~Al~Da~~ta~l~~~l~~~~ 185 (194)
T 2gui_A 154 --RYEIDNSKR---------T-------------LHGALLDAQILAEVYLAMTGGQ 185 (194)
T ss_dssp --HTTCCCTTC---------S-------------SCCHHHHHHHHHHHHHHHTC--
T ss_pred --HcCcCCCCC---------C-------------CCChHHHHHHHHHHHHHHHhcc
Confidence 467654210 0 0127789999999998776543
No 20
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=96.27 E-value=0.054 Score=53.11 Aligned_cols=141 Identities=9% Similarity=-0.075 Sum_probs=80.4
Q ss_pred CCceEEEEEeecCCC-ccCcEEEEEEE-eC--Cc------eEEEEccC-C--C---------------------hhhHHH
Q 019798 48 RQLVIGFDCEGVDLC-RHGSLCIMQLA-FP--DA------IYLVDAIQ-G--G---------------------ETVVKA 93 (335)
Q Consensus 48 ~~~~ia~D~E~~~~~-~~~~l~~lqla-~~--~~------~~lid~~~-~--~---------------------~~~~~~ 93 (335)
....+.||+||++++ ...+++-|... +. +. ..+|.+.. . . .+++..
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~ 87 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHH
Confidence 457899999999986 44554333322 12 11 23443321 1 0 123455
Q ss_pred HHHHHcCCCceEEEEe-chhcHHHHHH---HcCCcc--------ceEeehhHHHHhhhhccC-CCCCC-----CCcccHH
Q 019798 94 CKPALESSYITKVIHD-CKRDSEALYF---QFGIKL--------HNVVDTQIAYSLIEEQEG-RKRSP-----DDYISFV 155 (335)
Q Consensus 94 Lk~lLe~~~i~KV~hd-~k~D~~~L~~---~~gi~l--------~~vfDt~lAayLL~~~~~-~~~l~-----~~~~sL~ 155 (335)
+..++..+....|+|| +.+|..+|.+ ++|+.. ...+||+-.+..+.+... ....+ ....+|.
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHH
Confidence 6667774556789999 8999998753 344432 347898876665543110 00000 0234788
Q ss_pred hhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 019798 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215 (335)
Q Consensus 156 ~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~ 215 (335)
.|++ ++|++... ..-|..||.++..|+..+..+
T Consensus 168 ~L~~---~~Gi~~~~------------------------aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 168 HLTK---ANGIEHSN------------------------AHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHH---HTTCCCC---------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHH---HcCCCCCC------------------------CCCHHHHHHHHHHHHHHHHHh
Confidence 8886 56765421 011668999999998887654
No 21
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=95.72 E-value=0.0037 Score=44.86 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhh
Q 019798 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRG 329 (335)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
.+|.+.+.+||+.|.+|..+.+...+.|.|.-...+++.+++.|+...+.+|.+++.+
T Consensus 11 I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 11 IDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp ECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred ECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 3667778999999999999999999999997654466788999998889999998875
No 22
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=95.59 E-value=0.13 Score=43.85 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=60.6
Q ss_pred hHHHHHHHHcCCC-----ceEEEEechhcHH-HHHH---HcCCcc-c---eEeehhHHHHhhhhccCCCCCCCCcccHHh
Q 019798 90 VVKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKL-H---NVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (335)
Q Consensus 90 ~~~~Lk~lLe~~~-----i~KV~hd~k~D~~-~L~~---~~gi~l-~---~vfDt~lAayLL~~~~~~~~l~~~~~sL~~ 156 (335)
++..+..++.+.. ...|+||+.+|+. +|.+ .+|+.. . .++||+-.+..+-+.. . ...+|..
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~-~-----~~~~L~~ 161 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP-R-----SQTKLTI 161 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC-G-----GGCSHHH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC-C-----ccchHHH
Confidence 3455666776542 3469999999996 7753 356653 2 5899987654332210 0 1237888
Q ss_pred hhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 019798 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (335)
Q Consensus 157 L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (335)
+++ ++|++.... ..-|..||.++.+|+..+.++..
T Consensus 162 l~~---~~gi~~~~~-----------------------~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 162 MLE---KLGMDYDGR-----------------------PHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp HHH---HTTCCCCSC-----------------------TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH---HcCCCCCCC-----------------------ccCcHHHHHHHHHHHHHHHHCCC
Confidence 886 567654310 01177899999999988876543
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=94.89 E-value=0.0033 Score=45.32 Aligned_cols=59 Identities=31% Similarity=0.517 Sum_probs=49.1
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhhhcc
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRMLE 333 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
...|.+||+.|.+|..+.+...|.|.+.....|+..+.+.|+...+.+|..++..++.+
T Consensus 14 ~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred hHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45578999999999999999999999887644555577889988899999999887754
No 24
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=94.87 E-value=0.31 Score=44.54 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=60.9
Q ss_pred hHHHHHHHHcCCC-----ceEEEEechhcHH-HHHH---HcCCccc----eEeehhHHHHhhhhccCCCCCCCCcccHHh
Q 019798 90 VVKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (335)
Q Consensus 90 ~~~~Lk~lLe~~~-----i~KV~hd~k~D~~-~L~~---~~gi~l~----~vfDt~lAayLL~~~~~~~~l~~~~~sL~~ 156 (335)
++..+..++.+.. ...|+||+.+|+. +|.+ .+|+... .++||+-...-+... .+ ...+|..
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-~~-----~~~~L~~ 229 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-PR-----SQTKLTI 229 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC-CG-----GGCSHHH
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCC-CC-----CCccHHH
Confidence 4456666776641 3569999999998 8753 3576642 588997543222110 01 1247889
Q ss_pred hhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 019798 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (335)
Q Consensus 157 L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~ 218 (335)
|++ ++|++.... ..-|..||.++..|+..+..+...
T Consensus 230 l~~---~~gi~~~g~-----------------------~H~Al~DA~ata~l~~~l~~~~~~ 265 (299)
T 1zbh_A 230 MLE---KLGMDYDGR-----------------------PNCGLDDSKNIARIAVRMLQDGCE 265 (299)
T ss_dssp HHH---HTTCCCCSC-----------------------TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH---HcCCCCCCC-----------------------CCChHHHHHHHHHHHHHHHHhCCc
Confidence 886 567654310 012778999999999988766543
No 25
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=94.59 E-value=0.014 Score=42.92 Aligned_cols=61 Identities=28% Similarity=0.454 Sum_probs=48.6
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCCC-CCC-CcceeccchhhHHHHHHHHhhhhcc
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPP-DKVFIIGPVKQVRKAEAMLRGRMLE 333 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
|+...+.+||+.|.+|..+.+...|.|.|.... +.+ ..+.+.|+...|.+|..++...+-+
T Consensus 14 p~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 14 PKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp ETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred ChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 556778999999999999999999998886531 222 3577788888899999999876543
No 26
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.21 E-value=0.012 Score=45.42 Aligned_cols=61 Identities=30% Similarity=0.429 Sum_probs=49.9
Q ss_pred CCCCccccccccccccHHHHHHHhhhhhhhcCCCCC----CCcceeccchhhHHHHHHHHhhhhc
Q 019798 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP----PDKVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
.|+.+.|++||+.|.+|..+.+...+.|.|.....+ +..+.+.|+...+.+|..++...+-
T Consensus 21 Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 21 VPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred EChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 456777899999999999999999999999865432 3456788888899999999887653
No 27
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.17 E-value=0.028 Score=42.43 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=51.7
Q ss_pred hcCCCCccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhhh
Q 019798 270 LDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 270 Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
...|+...+.+||+.|.+|..+.+..++.|.|-....+...+.+.|+...+.+|..++...+
T Consensus 21 i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 21 VAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLIS 82 (94)
T ss_dssp EECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHh
Confidence 35677888999999999999999999999999765455677888999777999999987643
No 28
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.04 E-value=0.032 Score=42.30 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=50.4
Q ss_pred hhcCCCCccccccccccccHHHHHHHhhhhhhhcCCCC-CCCcceeccchhhHHHHHHHHhh
Q 019798 269 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKG-PPDKVFIIGPVKQVRKAEAMLRG 329 (335)
Q Consensus 269 lAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
-...+|.+.+++||+.|.+|..+.+..++.|.|..... +++.+++.|+...+.+|..++..
T Consensus 20 ~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~ 81 (95)
T 2ctm_A 20 DVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILN 81 (95)
T ss_dssp EEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHH
T ss_pred EEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 34557788899999999999999999999999965321 45579999998889999998875
No 29
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=94.01 E-value=0.015 Score=42.02 Aligned_cols=60 Identities=25% Similarity=0.439 Sum_probs=48.4
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCCC----C-CCCcceeccchhhHHHHHHHHhhhhc
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGAK----G-PPDKVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
|+...|.+||+.|.+|..+.+.+.|.|.|.... | ++..+.+.|+...+.+|..++...+-
T Consensus 10 p~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 10 PENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp ETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred ChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999988642 2 22357778998889999999887653
No 30
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=93.38 E-value=0.017 Score=42.44 Aligned_cols=60 Identities=30% Similarity=0.527 Sum_probs=47.1
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCC-CCC-CCcceeccchhhHHHHHHHHhhhhc
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGA-KGP-PDKVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
|+...|.+||+.|.+|..+.+...|.|.|... .|. +..+.+.|+...+.+|..++..++-
T Consensus 13 p~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 13 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLS 74 (82)
T ss_dssp EGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred chHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999988763 222 3346677888889999999987654
No 31
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.36 E-value=0.011 Score=44.96 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=49.9
Q ss_pred hcCCCCccccccccccccHHHHHHHh-hhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhh
Q 019798 270 LDVPPGKMGRIIGRRGSSILAIKESC-NAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGR 330 (335)
Q Consensus 270 Ag~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (335)
...+|.+.+.+||+.|..|..+.+.+ .+.|.|.-..-+.+.+++-||-+.|.+|.+++..-
T Consensus 21 i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i 82 (95)
T 2ctj_A 21 VSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHL 82 (95)
T ss_dssp EECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred EEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHH
Confidence 34456666789999999999999999 88888865444567899999999999999988763
No 32
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.14 E-value=0.021 Score=44.04 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=49.9
Q ss_pred cCCCCccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhhh
Q 019798 271 DVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
..+|.+.+.+||+.|.+|..+.+...+.|.|.-....++.+++.|+...+.+|..++...+
T Consensus 22 ~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 22 EVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERV 82 (104)
T ss_dssp ECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHH
Confidence 3455666799999999999999999999999764435568889999888999999987653
No 33
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=93.10 E-value=1.8 Score=44.75 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=83.5
Q ss_pred CceEEEEEeecCC---C-ccCcEEEEEEEeCCceEEEEccC---------CC-hhhHHHHHHHHc--CCCceEEEEec-h
Q 019798 49 QLVIGFDCEGVDL---C-RHGSLCIMQLAFPDAIYLVDAIQ---------GG-ETVVKACKPALE--SSYITKVIHDC-K 111 (335)
Q Consensus 49 ~~~ia~D~E~~~~---~-~~~~l~~lqla~~~~~~lid~~~---------~~-~~~~~~Lk~lLe--~~~i~KV~hd~-k 111 (335)
-..++||+|+.+. + ....+..|++...+...++-... .. .+++..+..++. ||++ .||||. .
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDi-ivGyN~~~ 213 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDV-LITYNGDN 213 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSE-EEESSTTT
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCE-EEEeCCCC
Confidence 3679999999873 2 23345444444333333221111 11 134555555554 5665 499996 5
Q ss_pred hcHHHHHHH---cCCcc------------------------ceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCccc
Q 019798 112 RDSEALYFQ---FGIKL------------------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164 (335)
Q Consensus 112 ~D~~~L~~~---~gi~l------------------------~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~~L 164 (335)
+|+-.|.++ +|+.+ ...+|++....- . ..+ ...+|+++++ .+|
T Consensus 214 FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~---~---~~l--~sysL~~Va~--~~L 283 (775)
T 1qht_A 214 FDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRR---T---INL--PTYTLEAVYE--AVF 283 (775)
T ss_dssp THHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHH---H---SCC--SCCCHHHHHH--HHH
T ss_pred ccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHH---h---cCc--CcCCHHHHHH--HHh
Confidence 788776533 45442 126687654322 1 111 1348999998 899
Q ss_pred Ccccch--hHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHH
Q 019798 165 GISYQE--KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (335)
Q Consensus 165 ~~~l~~--k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~ 214 (335)
|..-.+ .++... -|...+--...+.|+..||..+.+|+..+..
T Consensus 284 g~~K~dv~~~~i~~-------~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 284 GKPKEKVYAEEIAQ-------AWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CCCCCCCCHHHHHH-------HHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHH-------HHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 864321 223322 2433331167899999999999999876643
No 34
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.09 E-value=0.058 Score=40.99 Aligned_cols=59 Identities=29% Similarity=0.406 Sum_probs=49.2
Q ss_pred cCCCCccccccccccccHHHHHHHhhhhhhhcCCCC----CCCcceeccchhhHHHHHHHHhhh
Q 019798 271 DVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKG----PPDKVFIIGPVKQVRKAEAMLRGR 330 (335)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 330 (335)
..+|...+++||+.|.+|..+.+..++.|.|.- .| +++.+.+.|+...+.+|..++..-
T Consensus 22 ~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~-~g~~~~~~~~V~I~G~~e~v~~A~~~I~~i 84 (97)
T 2ctl_A 22 TVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPD-KDDGNQPQDQITITGYEKNTEAARDAILRI 84 (97)
T ss_dssp ECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCC-TTTCSSCSSEEEEESCHHHHHHHHHHHHHH
T ss_pred EECHHHhhhcCCCCchhHHHHHHHHCCEEEecC-CCCCCCCccEEEEEeCHHHHHHHHHHHHHH
Confidence 447788899999999999999999999999864 34 446788899977799999988763
No 35
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=92.64 E-value=0.014 Score=43.61 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=46.0
Q ss_pred ccccccccccccHHHHHHHhhhhhhhcCCC-C-CCCcceeccchhhHHHHHHHHhhhhcc
Q 019798 276 KMGRIIGRRGSSILAIKESCNAEILIGGAK-G-PPDKVFIIGPVKQVRKAEAMLRGRMLE 333 (335)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
..+.+||+.|.+|..+.+.+.|.|.|.... + ++..+.+.|+...|.+|..++...+-+
T Consensus 24 ~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 24 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp HHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred hcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 446899999999999999999999886531 1 234477788988899999999877654
No 36
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=92.48 E-value=0.017 Score=41.71 Aligned_cols=58 Identities=29% Similarity=0.468 Sum_probs=45.9
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCC-CC-CCcceeccchhhHHHHHHHHhhhhc
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAK-GP-PDKVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
...|.+||+.|.+|..+.+...|.|.|.... +. +..+.+.|+...+.+|..++...+-
T Consensus 14 ~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 14 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999887631 22 3346778888889999999987653
No 37
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=92.43 E-value=0.056 Score=41.81 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=48.0
Q ss_pred CCccccccccccccHHHHHHHhhhhhhhcCCCCC----C-CcceeccchhhHHHHHHHHhhhhcc
Q 019798 274 PGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP----P-DKVFIIGPVKQVRKAEAMLRGRMLE 333 (335)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
+...+.+||+.|.+|..+.+...|.|.|-....| . ..+.+.|....|.+|..++..++-+
T Consensus 15 ~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 15 THKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp GGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred HHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 3556899999999999999999999999875432 1 3466778888899999999876543
No 38
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=92.23 E-value=0.036 Score=41.82 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=45.5
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCCC----CCCcceeccchhhHHHHHHHHhhhhc
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAKG----PPDKVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
.+.+++||+.|.+|..+.+.+.+.|.|..... ++..+.+.|....|.+|..++...+-
T Consensus 24 ~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 24 SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR 85 (94)
T ss_dssp HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHC
T ss_pred hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHh
Confidence 44579999999999999999999988865321 23446677888889999999887654
No 39
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=91.98 E-value=0.021 Score=42.43 Aligned_cols=57 Identities=25% Similarity=0.429 Sum_probs=46.3
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCC----C-CCCcceeccchhhHHHHHHHHhhhh
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAK----G-PPDKVFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
...|.+||+.|.+|..+.+.+.|.|.|.... | ++..+.+.|+...+.+|..++...+
T Consensus 12 ~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i 73 (87)
T 1ec6_A 12 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 73 (87)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999998632 2 2345778899888999999988765
No 40
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=91.88 E-value=0.02 Score=43.13 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=45.6
Q ss_pred ccccccccccccHHHHHHHhhhhhhhcCCC-C-CCCcceeccchhhHHHHHHHHhhhhc
Q 019798 276 KMGRIIGRRGSSILAIKESCNAEILIGGAK-G-PPDKVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
..+.+||+.|.+|..+.+.+.|.|.|.... + ++..+.+.|+...|.+|..++...+-
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 25 MVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVE 83 (92)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999887642 2 23457778998889999999877543
No 41
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=91.61 E-value=0.052 Score=41.98 Aligned_cols=59 Identities=25% Similarity=0.501 Sum_probs=46.8
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCCC--CCCCcceeccchhhHHHHHHHHhhhh
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGAK--GPPDKVFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
++.+.+.+||+.|++|..+.+.+.+.|.|.... .|+..+.+.++...+.+|..++...+
T Consensus 18 p~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii 78 (106)
T 2hh3_A 18 PRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLL 78 (106)
T ss_dssp ETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999986422 23335777888778999999887654
No 42
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=91.47 E-value=0.098 Score=38.53 Aligned_cols=58 Identities=31% Similarity=0.541 Sum_probs=46.1
Q ss_pred CCCCccccccccccccHHHHHHHhhhhhhhcCCCCC----CCc-ceeccchhhHHHHHHHHhhh
Q 019798 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP----PDK-VFIIGPVKQVRKAEAMLRGR 330 (335)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~ 330 (335)
.|+.+.|++||+.|.+|..+.+...+.|.|.. .|. .++ +.+.|....+.+|..++...
T Consensus 20 Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 20 IPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQNTNVDKPLRIIGDPYKVQQACEMVMDI 82 (85)
T ss_dssp ECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCSSTTSCEEEEEEECHHHHHHHHHHHHHH
T ss_pred eChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCCCCCCceEEEEEeCHHHHHHHHHHHHHH
Confidence 46677889999999999999999999988875 332 344 66678777799999988654
No 43
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=91.06 E-value=0.56 Score=43.02 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=56.0
Q ss_pred hHHHHHHHHcCCCceEEEEec------hhcH-HHHH---HHcCCccc----eEeehhHHHHhhhhccCCCCCCCCcccHH
Q 019798 90 VVKACKPALESSYITKVIHDC------KRDS-EALY---FQFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFV 155 (335)
Q Consensus 90 ~~~~Lk~lLe~~~i~KV~hd~------k~D~-~~L~---~~~gi~l~----~vfDt~lAayLL~~~~~~~~l~~~~~sL~ 155 (335)
++..+..++.+..+ |+||+ .+|+ .+|. ..+|+... ..+||+-.+..+-+....... ....+|.
T Consensus 98 vl~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~-~~~~~L~ 174 (308)
T 3cg7_A 98 VYEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKEL-SATTNIG 174 (308)
T ss_dssp HHHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCC-CCCSHHH
T ss_pred HHHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcccccccc-ccCcCHH
Confidence 34556667765432 45555 8998 4654 34677652 478998655443332210000 0124788
Q ss_pred hhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 019798 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215 (335)
Q Consensus 156 ~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~ 215 (335)
++++ ++|++.... ..-|..||.++.+|+..+..+
T Consensus 175 ~l~~---~~gi~~~~~-----------------------~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 175 KMNE---YYDLPTIGR-----------------------AHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HHHH---HTTCCCCSC-----------------------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHH---HcCCCCCCC-----------------------CcCHHHHHHHHHHHHHHHHHc
Confidence 8886 667654310 011778999999998887654
No 44
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=90.87 E-value=0.031 Score=46.21 Aligned_cols=58 Identities=29% Similarity=0.505 Sum_probs=48.6
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhhhc
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
...|.+||+.|.+|..+.+.+.+.|.+.....|+..+.+.|+...|.+|..++..++.
T Consensus 14 ~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (160)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998765566667778998889999998876653
No 45
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=89.52 E-value=1.6 Score=37.78 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=53.6
Q ss_pred hHHHHHHHHcCCCceEEEEec--------hhcHHH-HH---HHcCCccc----eEeehhHHHHhhhhccCCCCCCCCccc
Q 019798 90 VVKACKPALESSYITKVIHDC--------KRDSEA-LY---FQFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYIS 153 (335)
Q Consensus 90 ~~~~Lk~lLe~~~i~KV~hd~--------k~D~~~-L~---~~~gi~l~----~vfDt~lAayLL~~~~~~~~l~~~~~s 153 (335)
++..+..++.+.. .|+||+ .+|+.. |. ..+|+... ..+|++-...+...... ..+
T Consensus 107 v~~~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p-------~~~ 177 (224)
T 2xri_A 107 VLERVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP-------KNG 177 (224)
T ss_dssp HHHHHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC-------TTT
T ss_pred HHHHHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC-------CCC
Confidence 4456667777643 378888 999985 53 24676642 57896432222211111 137
Q ss_pred HHhhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHH
Q 019798 154 FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (335)
Q Consensus 154 L~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~ 214 (335)
|..|++ ++|++.... ..-|..||..+.+|+..+..
T Consensus 178 L~~l~~---~~gi~~~~~-----------------------~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 178 LLDMNK---GLSLQHIGR-----------------------PHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp HHHHHH---HTTCCCCSC-----------------------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HcCCCCCCC-----------------------CcChHHHHHHHHHHHHHHHH
Confidence 888886 567543210 01277899999999888764
No 46
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=87.18 E-value=0.24 Score=40.75 Aligned_cols=60 Identities=27% Similarity=0.487 Sum_probs=48.2
Q ss_pred CCCCccccccccccccHHHHHHHhhhhhhhcCCCCCCC----cceeccchhhHHHHHHHHhhhh
Q 019798 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPD----KVFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
.|+...|.+||+.|.+|..+.+...+.|.|.....|.. .+.+.|....|.+|..++...+
T Consensus 91 vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 154 (163)
T 3krm_A 91 VPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDIL 154 (163)
T ss_dssp EETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999998866433322 3668899999999999987654
No 47
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=86.65 E-value=0.22 Score=41.53 Aligned_cols=58 Identities=29% Similarity=0.476 Sum_probs=47.0
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCCCCCC-----CcceeccchhhHHHHHHHHhhh
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPP-----DKVFIIGPVKQVRKAEAMLRGR 330 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 330 (335)
|+...|.+||+.|.+|..+.+.+.|.|.|.....|. ..+.+.|....|.+|..++..+
T Consensus 111 p~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 111 PTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEK 173 (174)
T ss_dssp ETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHH
T ss_pred ChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 456678999999999999999999999987643221 3467889888899999998764
No 48
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=86.45 E-value=0.27 Score=40.39 Aligned_cols=60 Identities=28% Similarity=0.459 Sum_probs=47.0
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCC---CCCCCc-ceeccchhhHHHHHHHHhhhhc
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGA---KGPPDK-VFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
++...|.+||+.|.+|..+.+.+.+.|.+--. .+.+++ +.+.|+...|.+|..++...+-
T Consensus 9 p~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~ 72 (164)
T 2jvz_A 9 PAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 72 (164)
T ss_dssp CTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred chhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999998877421 223444 6667888889999998877654
No 49
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=86.36 E-value=0.13 Score=54.42 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=66.8
Q ss_pred ceEEEEechhcHHHHHHHcCCccce--EeehhHHHHhhhh----cc--------CC------------------------
Q 019798 103 ITKVIHDCKRDSEALYFQFGIKLHN--VVDTQIAYSLIEE----QE--------GR------------------------ 144 (335)
Q Consensus 103 i~KV~hd~k~D~~~L~~~~gi~l~~--vfDt~lAayLL~~----~~--------~~------------------------ 144 (335)
-+.||||..||-.-+...|.+.-.+ .+|||-++-.+.- ++ ++
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 3459999999998766788888643 7899987654321 00 00
Q ss_pred --CCCC-CCcc--cHHhhhcCCcccCc-ccchhHHHHHHhcCCCCCCccCCCC---HHHHHHHHhhhhHHHHHHHHHHHH
Q 019798 145 --KRSP-DDYI--SFVGLLADPRYCGI-SYQEKEEVRVLLRQDPQFWTYRPLT---ELMVRAAADDVRFLPYIYHNMMKK 215 (335)
Q Consensus 145 --~~l~-~~~~--sL~~L~~~~~~L~~-~l~~k~~~~~~~~~~~~~w~~rpL~---~~~~~YAa~Da~~ll~L~~~L~~~ 215 (335)
..+. ...- ||.++++ -|||. +++| +. +.+|.+. ....+. .+.+.|||.||.+++++|..+-+.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~--lhcg~~~ldK-~~-Rd~Fv~~----~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~ 346 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHR--LYVGGPPLEK-EP-RELFVKG----TMKDIRENFQDLMQYCAQDVWATHEVFQQQLPL 346 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHT--CSSCSCS--S-CS-SSSTTTT----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHH--HhCCCcccCh-hh-HhhhhcC----CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0010 0123 6888888 89997 6663 22 2222111 111111 456899999999999999999988
Q ss_pred Hhc
Q 019798 216 LNQ 218 (335)
Q Consensus 216 L~~ 218 (335)
..+
T Consensus 347 F~e 349 (1172)
T 3ikm_A 347 FLE 349 (1172)
T ss_dssp HHT
T ss_pred HHH
Confidence 665
No 50
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=85.91 E-value=0.22 Score=40.93 Aligned_cols=59 Identities=24% Similarity=0.459 Sum_probs=47.7
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCCCCC--CCcceeccchhhHHHHHHHHhhhh
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP--PDKVFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
|+...|.+||+.|.+|..+.+...+.|.|....+. +..+.+.|+...|.+|..++...+
T Consensus 98 p~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 158 (164)
T 2jvz_A 98 PRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLL 158 (164)
T ss_dssp ETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999988754322 235778899888999999987643
No 51
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=84.43 E-value=4.5 Score=34.06 Aligned_cols=51 Identities=14% Similarity=-0.053 Sum_probs=29.3
Q ss_pred hHHHHHHHHcC----CCceEEEEechhcHHHHHHH---cCCccc-eEee--hhH-HHHhhhh
Q 019798 90 VVKACKPALES----SYITKVIHDCKRDSEALYFQ---FGIKLH-NVVD--TQI-AYSLIEE 140 (335)
Q Consensus 90 ~~~~Lk~lLe~----~~i~KV~hd~k~D~~~L~~~---~gi~l~-~vfD--t~l-AayLL~~ 140 (335)
+...+..++.. .....|+||+.+|...|.+. +|..+. .++| |.- .+..+.|
T Consensus 88 v~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P 149 (186)
T 3tr8_A 88 AETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAP 149 (186)
T ss_dssp HHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCc
Confidence 34455566631 23456999999999998643 233332 3677 543 3444444
No 52
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=84.19 E-value=0.33 Score=39.81 Aligned_cols=59 Identities=27% Similarity=0.419 Sum_probs=46.6
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCCCC---CCcceeccchhhHHHHHHHHhhhhcc
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PDKVFIIGPVKQVRKAEAMLRGRMLE 333 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
...|.+||+.|.+|..+.+.+.|.|.+.....| +..+.+.|+...|.+|..++...+.|
T Consensus 98 ~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 98 SQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999988753222 23466789888899999998876654
No 53
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=83.88 E-value=0.24 Score=40.80 Aligned_cols=60 Identities=28% Similarity=0.449 Sum_probs=46.5
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCC--CCCCC-cceeccchhhHHHHHHHHhhhhc
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGA--KGPPD-KVFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
|+...|.+||+.|.+|..+.+.+.+.|.|--. .+.++ .+.+.|+...+.+|..++..++.
T Consensus 10 p~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~ 72 (163)
T 3krm_A 10 PAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLK 72 (163)
T ss_dssp EGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred chhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999998888542 23344 46677888889999888877654
No 54
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.68 E-value=0.38 Score=35.27 Aligned_cols=55 Identities=18% Similarity=0.359 Sum_probs=41.1
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhh
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGR 330 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (335)
...|.+||+.|.+|..+.+...+.|.|-. .+.+..+.+.|....+.+|+.++...
T Consensus 19 ~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-~~~~~~v~ItG~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 19 RVVGLVVGPKGATIKRIQQRTHTYIVTPG-RDKEPVFAVTGMPENVDRAREEIEAH 73 (83)
T ss_dssp HHHHHHHTTTTSSHHHHHHHTTCEEECCC-SSSCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHeeeeECCCchHHHHHHHHhCCeEEecC-CCCCCeEEEEcCHHHHHHHHHHHHHH
Confidence 34578999999999999999999988864 22333344556666699999888763
No 55
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=81.58 E-value=4.8 Score=37.88 Aligned_cols=104 Identities=9% Similarity=-0.041 Sum_probs=58.8
Q ss_pred hHHHHHHHH--cCCCceEEEEec-hhcHHHHHHH----cCC---------------------------ccc--eEeehhH
Q 019798 90 VVKACKPAL--ESSYITKVIHDC-KRDSEALYFQ----FGI---------------------------KLH--NVVDTQI 133 (335)
Q Consensus 90 ~~~~Lk~lL--e~~~i~KV~hd~-k~D~~~L~~~----~gi---------------------------~l~--~vfDt~l 133 (335)
++..+..++ .||.+ .+|||. .+|+-.|.++ +|+ .+. -++|++-
T Consensus 194 LL~~f~~~i~~~dPDi-i~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~~ 272 (388)
T 1noy_A 194 MLMEYINLWEQKRPAI-FTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLD 272 (388)
T ss_dssp HHHHHHHHHHHSCCSE-EECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHH
T ss_pred HHHHHHHHHHHhCCcE-EEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHHH
Confidence 455555555 46765 488997 5788665422 332 111 1567765
Q ss_pred HHHhhhhc-cCCCCCCCCcccHHhhhcCCcccCcccchh-HHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHH
Q 019798 134 AYSLIEEQ-EGRKRSPDDYISFVGLLADPRYCGISYQEK-EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHN 211 (335)
Q Consensus 134 AayLL~~~-~~~~~l~~~~~sL~~L~~~~~~L~~~l~~k-~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~ 211 (335)
...-+... .+ ..+|+++++ .+||..-.+. +++.. -|... ....+.|+..||..+++|+.+
T Consensus 273 ~~k~~~~~~l~-------sysL~~Va~--~~Lg~~K~d~~~~i~~-------~~~~~--~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 273 LYKKFAFTNLP-------SFSLESVAQ--HETKKGKLPYDGPINK-------LRETN--HQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp HHHHHTCCCCS-------CCSHHHHHH--HHHSCCCCCCSSCGGG-------HHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcCccc-------CCCHHHHHH--HHhCCCCCCcHHHHHH-------HHHhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 44432221 22 347889998 8887531110 11100 13211 156789999999999999987
Q ss_pred H
Q 019798 212 M 212 (335)
Q Consensus 212 L 212 (335)
+
T Consensus 335 l 335 (388)
T 1noy_A 335 R 335 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 56
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=81.24 E-value=0.22 Score=41.55 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=44.4
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCC-CCCCCc-ceeccchhhHHHHHHHHhhhh
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGA-KGPPDK-VFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 331 (335)
...|.+||+.|.+|..+.+.+.+.|.+... .+.+++ +.+.|+...|.+|..++...+
T Consensus 12 ~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~ 70 (174)
T 1j4w_A 12 FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLL 70 (174)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred hheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988642 233444 566788888999998886554
No 57
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=81.23 E-value=0.46 Score=39.69 Aligned_cols=59 Identities=29% Similarity=0.400 Sum_probs=46.9
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCC-C---CCCcceeccchhhHHHHHHHHhhhhcc
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAK-G---PPDKVFIIGPVKQVRKAEAMLRGRMLE 333 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
...|.+||+.|.+|..+.+.+.|.|.|.... + .+..+.+.|+...|.+|..++..++-+
T Consensus 113 ~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 113 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred hheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 3447899999999999999999988886532 1 223577889999999999999887654
No 58
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=80.92 E-value=3.9 Score=33.69 Aligned_cols=30 Identities=13% Similarity=-0.062 Sum_probs=21.6
Q ss_pred hHHHHHHHHcCC----CceEEEEechhcHHHHHH
Q 019798 90 VVKACKPALESS----YITKVIHDCKRDSEALYF 119 (335)
Q Consensus 90 ~~~~Lk~lLe~~----~i~KV~hd~k~D~~~L~~ 119 (335)
++..+..++.+- ....|+||+.+|..+|.+
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~ 117 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFK 117 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHH
Confidence 345566677651 246799999999999964
No 59
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=80.32 E-value=4.8 Score=37.49 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=60.8
Q ss_pred hHHHHHHHHcCCC-----ceEEEEechhcHH-HHHH---HcCCcc----ceEeehhHHHHhhhhccCCCCCCCCcccHHh
Q 019798 90 VVKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKL----HNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (335)
Q Consensus 90 ~~~~Lk~lLe~~~-----i~KV~hd~k~D~~-~L~~---~~gi~l----~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~ 156 (335)
++..|..++.+.. ...|+||+.+|+. +|.+ .+|+.. ..++||+....-+... .+ ...+|..
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-~~-----~~~~L~~ 279 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-PR-----SQTKLTI 279 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC-CG-----GGGSHHH
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcC-CC-----CCCCHHH
Confidence 4456666776541 3569999999998 8753 356654 2588997653322110 01 1247888
Q ss_pred hhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 019798 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (335)
Q Consensus 157 L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~ 218 (335)
|++ ++|++.... ..-|..||.++..|+..+..+...
T Consensus 280 l~~---~~gi~~~g~-----------------------~HrAl~DA~ata~ll~~ll~~~~~ 315 (349)
T 1zbu_A 280 MLE---KLGMDYDGR-----------------------PHCGLDDSKNIARIAVRMLQDGCE 315 (349)
T ss_dssp HHH---HTTCCCCSC-----------------------TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH---HcCCCCCCC-----------------------CCCHHHHHHHHHHHHHHHHHhccc
Confidence 886 567654310 012778999999999888766543
No 60
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=78.28 E-value=0.34 Score=40.55 Aligned_cols=58 Identities=21% Similarity=0.481 Sum_probs=44.3
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCC----CCCCc-ceeccchhhHHHHHHHHhhhhc
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAK----GPPDK-VFIIGPVKQVRKAEAMLRGRML 332 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
...|.+||+.|.+|..+.+...+.|.+.... |.+++ +.+.|+...|.+|..++..++.
T Consensus 15 ~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 15 YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 77 (178)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHh
Confidence 4457899999999999999999998886422 23344 5556888889999988876553
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=76.66 E-value=0.34 Score=36.25 Aligned_cols=56 Identities=27% Similarity=0.296 Sum_probs=43.9
Q ss_pred cCCCCccccccccccccHHHHHHHhhhh-hhhcCCCCCCCcceeccchhh-HHHHHHHHhh
Q 019798 271 DVPPGKMGRIIGRRGSSILAIKESCNAE-ILIGGAKGPPDKVFIIGPVKQ-VRKAEAMLRG 329 (335)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 329 (335)
..+|.+++.+||..|++|..+.+...+. |-|.- ....+++.++-++ +.+|++++.+
T Consensus 20 ~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e---ddG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 20 VVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE---DTGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp ECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET---TTTEEEEEESSHHHHHHHHHHHSC
T ss_pred EEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc---CCCEEEEEECCHHHHHHHHHHHHh
Confidence 4577888999999999999999999886 88853 1245677775555 8999998865
No 62
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=75.27 E-value=8.6 Score=32.18 Aligned_cols=20 Identities=20% Similarity=0.021 Sum_probs=16.9
Q ss_pred HHhhhhHHHHHHHHHHHHHh
Q 019798 198 AADDVRFLPYIYHNMMKKLN 217 (335)
Q Consensus 198 Aa~Da~~ll~L~~~L~~~L~ 217 (335)
|-.||.++..++..+++++.
T Consensus 163 Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 163 ALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 77899999999998877664
No 63
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=73.12 E-value=1.5 Score=33.37 Aligned_cols=50 Identities=26% Similarity=0.474 Sum_probs=39.8
Q ss_pred ccccccccccHHHHHHHh-hhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhh
Q 019798 278 GRIIGRRGSSILAIKESC-NAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGR 330 (335)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (335)
+.+||++|.+|..+.+.+ ++.|.+ +. .++.+.+-||..+|.+|.+.|..-
T Consensus 39 ~~IIG~~G~~Ik~i~~~~~~v~I~f--p~-~~~~ItI~G~~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 39 RFIIGKKGQNLAKITQQMPKVHIEF--TE-GEDKITLEGPTEDVSVAQEQIEGM 89 (102)
T ss_dssp HHHHTTTTCHHHHHHHHCSSSEEEE--CS-SSCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhcCCCCccHHHHHHHcCCcEEEe--CC-CCCEEEEECCHHHHHHHHHHHHHH
Confidence 478999999999999975 444433 33 478899999999999999988653
No 64
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=70.39 E-value=0.97 Score=36.60 Aligned_cols=60 Identities=20% Similarity=0.422 Sum_probs=45.2
Q ss_pred CCCCccccccccccccHHHHHHHhhh-hhhhcCCCCC----CCc---ceeccchhhHHHHHHHHhhhh
Q 019798 272 VPPGKMGRIIGRRGSSILAIKESCNA-EILIGGAKGP----PDK---VFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~ 331 (335)
.|+...++.||+.|.+|..+.+.+-+ .|.|-+...+ +++ +-++|+...++.|..+|-.++
T Consensus 73 Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 73 VPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp EEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 45567789999999999999999875 5666543222 122 347899999999999987654
No 65
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.70 E-value=1.6 Score=34.19 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=41.9
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCC-----------C-CCCcceeccchhh-HHHHHHHHhh
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAK-----------G-PPDKVFIIGPVKQ-VRKAEAMLRG 329 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~-~~~~~~~~~~ 329 (335)
...+++||..|.+|..+.+...+.|.|.|.- . .|..++|..+-.+ +.+|.+++..
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~ 95 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCEN 95 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHH
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999998631 0 3345666666444 8888887654
No 66
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=65.90 E-value=0.15 Score=37.95 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=39.9
Q ss_pred CCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHhhh
Q 019798 245 WPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNA 297 (335)
Q Consensus 245 ~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 297 (335)
|+.-.+...++++..+..+..+.++|...|.+.. ..+.++|..++.+++.+..
T Consensus 22 wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 22 LRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp HHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3434444556677788889999999999997743 4667789999999988744
No 67
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=58.81 E-value=3.3 Score=35.98 Aligned_cols=50 Identities=34% Similarity=0.469 Sum_probs=42.8
Q ss_pred cccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhhhh
Q 019798 277 MGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRM 331 (335)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
.|++||+.|.++.++.+.+.+.|.+-+ ..+.++|+...++.|+.++.-.+
T Consensus 140 ~GriIGk~G~tik~ie~~Tg~~I~v~~-----~~v~i~G~~~~i~~A~~~i~~li 189 (219)
T 2e3u_A 140 RGRIIGRKGRTRQIIEEMSGASVSVYG-----KTVAIIGNPIQIEIAKTAIEKLA 189 (219)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEEET-----TEEEEEECHHHHHHHHHHHHHHH
T ss_pred hheeECCCchHHHHHHHHhCceEEECC-----eEEEEEeCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999865 45889999999999987765443
No 68
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=56.09 E-value=0.46 Score=36.24 Aligned_cols=49 Identities=2% Similarity=-0.073 Sum_probs=37.6
Q ss_pred CCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHhhhh
Q 019798 250 PVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNAE 298 (335)
Q Consensus 250 ~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 298 (335)
+...++++..+..++.+.++|...|.+.. ..+.++|..++.+++.+..+
T Consensus 36 A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~~e 94 (101)
T 2rrd_A 36 GKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEW 94 (101)
T ss_dssp HHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhChh
Confidence 33456677778888999999999997742 35668999999999887433
No 69
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=54.58 E-value=0.37 Score=35.43 Aligned_cols=54 Identities=2% Similarity=-0.089 Sum_probs=41.5
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHhhh
Q 019798 244 DWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNA 297 (335)
Q Consensus 244 d~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 297 (335)
.|+.-.+...++++..+..++.+.++|...|.+.. ..+.++|..++++++....
T Consensus 15 ~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~~ 78 (85)
T 2kv2_A 15 EVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSE 78 (85)
T ss_dssp HHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34444555667778888899999999999997743 3566889999999988743
No 70
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=54.56 E-value=4 Score=32.46 Aligned_cols=54 Identities=33% Similarity=0.635 Sum_probs=41.2
Q ss_pred ccccccccccccHHHHHHHhhhhhhhcCC-----------CC-------CCCcceeccchhh-HHHHHHHHhh
Q 019798 276 KMGRIIGRRGSSILAIKESCNAEILIGGA-----------KG-------PPDKVFIIGPVKQ-VRKAEAMLRG 329 (335)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-------~~~~~~~~~~~~~-~~~~~~~~~~ 329 (335)
..|++||-+|.++-.+.+.+.+.|.|.|. .| .|..++|.++-.+ +.+|.+++..
T Consensus 23 ~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ 95 (131)
T 1k1g_A 23 FVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRN 95 (131)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred eeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 45799999999999999999999999872 11 1556776666554 7888877665
No 71
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=53.38 E-value=0.31 Score=35.06 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=38.9
Q ss_pred CCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHh
Q 019798 245 WPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESC 295 (335)
Q Consensus 245 ~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~ 295 (335)
|+.-.+...++++.....++.+.++|...|.+.. ..+.++|..++++++..
T Consensus 14 wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~ 74 (77)
T 2rhf_A 14 LRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTV 74 (77)
T ss_dssp HHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4444445567778888899999999999997743 46677899999988765
No 72
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=51.74 E-value=1e+02 Score=31.77 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=33.5
Q ss_pred cccHHhhhcCCcccCcccc---h---hHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHH
Q 019798 151 YISFVGLLADPRYCGISYQ---E---KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212 (335)
Q Consensus 151 ~~sL~~L~~~~~~L~~~l~---~---k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L 212 (335)
..+|+++++ .+||..-. . .+++.. -|...+ ...+.|+..||..+++|+.++
T Consensus 293 SysL~~Va~--~~Lg~~K~~~~~~~~~~eI~~-------~~~~~~--~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 293 SFSLETVAQ--ELLGEGKSIDNPWDRMDEIDR-------RFAEDK--PALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp CCSHHHHHH--HHHCCCCC-CCHHHHHHHHHH-------HHHHCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH--HHhCCCCcccCccccHHHHHH-------HHhcCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 358999999 88885321 1 112222 122222 577899999999999998874
No 73
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=51.20 E-value=1.5e+02 Score=30.64 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=60.7
Q ss_pred hhHHHHHHHHcCCCceEEEEec-hhcHHHHHH---HcCCc-------c----------ceEeehhHHHH--hhh-hccCC
Q 019798 89 TVVKACKPALESSYITKVIHDC-KRDSEALYF---QFGIK-------L----------HNVVDTQIAYS--LIE-EQEGR 144 (335)
Q Consensus 89 ~~~~~Lk~lLe~~~i~KV~hd~-k~D~~~L~~---~~gi~-------l----------~~vfDt~lAay--LL~-~~~~~ 144 (335)
+++..+..++.+.. ..+|||. .+|+-.|.+ .+|+. + ...+|++-... .+. ... .
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f-~ 336 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAF-E 336 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTS-T
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcc-c
Confidence 46777888888876 5699997 579987753 25553 1 12467653211 000 000 0
Q ss_pred CCCCCCcccHHhhhcCCcccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHH
Q 019798 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYH 210 (335)
Q Consensus 145 ~~l~~~~~sL~~L~~~~~~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~ 210 (335)
..+ ...+|+.+++ .+||..-. ... ..|.... ....+.|+-.||..+++|+.
T Consensus 337 ~kl--~sysL~~Va~--~~Lg~~K~---dv~-------~~i~~~~-~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 337 GKY--NEYNLDAVAK--ALLGTSKV---KVD-------TLISFLD-VEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp TCC--SSCSHHHHHH--HHHCCCCC-----S-------SCTTTCC-HHHHHHHHHHHHHHHHHTTT
T ss_pred ccc--ccccHHHHHH--HHhCCCCc---chh-------Hhhhhcc-HHHHHHHHHHHHHHHHHHHH
Confidence 011 1348899998 88885321 110 1232111 26778999999999999853
No 74
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=49.70 E-value=9.5 Score=35.84 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=42.1
Q ss_pred ccccccc--ccHHHHHHHhhhhhhhcCCC-------CCCCcceeccchhhHHHHHHHHhh
Q 019798 279 RIIGRRG--SSILAIKESCNAEILIGGAK-------GPPDKVFIIGPVKQVRKAEAMLRG 329 (335)
Q Consensus 279 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
.+||++| .+|..+.+..+..|.+--.. ...+.+.+-|+...|.+|++.|+.
T Consensus 43 ~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~ 102 (376)
T 3n89_A 43 LMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRR 102 (376)
T ss_dssp HHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred hhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHh
Confidence 6899999 99999999999888884322 123458889999999999999876
No 75
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=48.72 E-value=6.9 Score=33.22 Aligned_cols=49 Identities=31% Similarity=0.397 Sum_probs=41.9
Q ss_pred ccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceeccchhhHHHHHHHHhh
Q 019798 276 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRG 329 (335)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
..|++||+.|.++..+...+.+.|.+-|. .+.++|+.+.++.|+..+.-
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-----~v~i~G~~~~i~~Ar~~i~~ 156 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-----EVAIIGDYERAMAAKQAIEM 156 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-----EEEEEEEHHHHHHHHHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-----EEEEEeChHHHHHHHHHHHH
Confidence 35899999999999999999999998763 78899999999888766543
No 76
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=42.26 E-value=49 Score=32.73 Aligned_cols=65 Identities=6% Similarity=-0.034 Sum_probs=37.8
Q ss_pred CceEEEEEeecCCCccCcEEEEEEEeC--CceEEEEccCCChhhHHHHHHHHcCCCceEEEEechhcHHHHHH
Q 019798 49 QLVIGFDCEGVDLCRHGSLCIMQLAFP--DAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYF 119 (335)
Q Consensus 49 ~~~ia~D~E~~~~~~~~~l~~lqla~~--~~~~lid~~~~~~~~~~~Lk~lLe~~~i~KV~hd~k~D~~~L~~ 119 (335)
...+++|+|+......+.+..+.+... -..|+.+- . +..+-.++.+.+...++||+++|...|.+
T Consensus 6 ~~i~~~D~Et~~d~~~~~~~~i~~~~~~~~~~~~~~~-----~-l~~fi~~~~~~~~~i~~hNl~FD~~~l~~ 72 (575)
T 2py5_A 6 RKMYSCAFETTTKVEDCRVWAYGYMNIEDHSEYKIGN-----S-LDEFMAWVLKVQADLYFHNLKFAGAFIIN 72 (575)
T ss_dssp CCEEEEEEEECCBTTBCCEEEEEEEESSCTTCEEEES-----C-HHHHHHHHHHHCCEEEETTHHHHHHHHHH
T ss_pred ceEEEEEEEeecCCCCCceEEEEEEeCCceEEEEech-----h-HHHHHHHHHHcCCEEEEEChhhhHHHHHH
Confidence 468899999864444445555555543 23444421 1 22222233333455688999999988753
No 77
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=35.63 E-value=32 Score=33.49 Aligned_cols=107 Identities=17% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHHcCCCceEEEEechhcHHHHHHHcCCcc---------------ceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcC
Q 019798 96 PALESSYITKVIHDCKRDSEALYFQFGIKL---------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160 (335)
Q Consensus 96 ~lLe~~~i~KV~hd~k~D~~~L~~~~gi~l---------------~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~ 160 (335)
+.+.+.+.+.||||+-.|+..|++.|--.+ ..++||...+....-.... ..-||..|.+
T Consensus 270 ~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~-----~~~~L~~l~~- 343 (507)
T 3d45_A 270 HAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDII-----NNTSLAELEK- 343 (507)
T ss_dssp HHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHC-----CCCCHHHHHH-
T ss_pred HHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCcccccc-----CCCCHHHHHH-
Confidence 344445678899999999988876543211 2489999766531110000 0127888876
Q ss_pred CcccCcc---cchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 019798 161 PRYCGIS---YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (335)
Q Consensus 161 ~~~L~~~---l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~ 218 (335)
+|... .+.-.- ..+...+. .+....+-|+.||+.+-.++-.|...|..
T Consensus 344 --~l~~~~~~~p~i~~-----~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~~ 394 (507)
T 3d45_A 344 --RLKETPFDPPKVES-----AEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLGS 394 (507)
T ss_dssp --HTTSTTCCCCCEEE-----CTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred --HHhccCCCCCeEEe-----cccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 33311 110000 00000111 01122344999999999999999988864
No 78
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=34.95 E-value=2.5 Score=32.73 Aligned_cols=48 Identities=2% Similarity=-0.062 Sum_probs=36.1
Q ss_pred CCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHhhhh
Q 019798 250 PVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNAE 298 (335)
Q Consensus 250 ~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 298 (335)
+...++++..+..++.+.++|...|.+.. ..+.++ ..++.+++....+
T Consensus 36 A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~ 93 (113)
T 2dgz_A 36 ANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQT 93 (113)
T ss_dssp HHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHHT
T ss_pred HHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHh
Confidence 33455666777888899999999997742 467778 9999999887544
No 79
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=33.83 E-value=13 Score=29.81 Aligned_cols=54 Identities=24% Similarity=0.426 Sum_probs=40.3
Q ss_pred CccccccccccccHHHHHHHhhhhhhhcCCCC---------------------CCCcceeccchh------hHHHHHHHH
Q 019798 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAKG---------------------PPDKVFIIGPVK------QVRKAEAML 327 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~------~~~~~~~~~ 327 (335)
.-+|++||-+|.++-.+.+.+.+.|.|-| +| -|..++|-++-. .+++|.+++
T Consensus 17 NfiG~IiGPrG~t~K~ie~eTg~kI~IrG-kGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I 95 (140)
T 2bl5_A 17 NFVGRILGPRGLTAKQLEAETGCKIMVRG-KGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEV 95 (140)
T ss_dssp CHHHHHTTTTHHHHHHHHHHHSEEEEEES-TTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHH
T ss_pred CeeeEEECCCcchHHHHHHHHCCeEEEec-CCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHH
Confidence 34689999999999999999999999998 44 123666665433 367777766
Q ss_pred hh
Q 019798 328 RG 329 (335)
Q Consensus 328 ~~ 329 (335)
..
T Consensus 96 ~~ 97 (140)
T 2bl5_A 96 KK 97 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 80
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=33.13 E-value=1.6e+02 Score=24.52 Aligned_cols=19 Identities=16% Similarity=-0.068 Sum_probs=14.2
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 019798 198 AADDVRFLPYIYHNMMKKL 216 (335)
Q Consensus 198 Aa~Da~~ll~L~~~L~~~L 216 (335)
|-.||.+.++.|..+...-
T Consensus 164 AL~DAR~n~~~~~~~~~~~ 182 (190)
T 4hec_A 164 ALVDARDQLRRFRLITSTD 182 (190)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHhCcc
Confidence 7789999998888876443
No 81
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=30.43 E-value=12 Score=30.07 Aligned_cols=52 Identities=27% Similarity=0.353 Sum_probs=33.6
Q ss_pred CCCccccccccccccHHHHHHHhhhhhhhcCCCCCCCcceec-c-chhhHHHHHHHH
Q 019798 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFII-G-PVKQVRKAEAML 327 (335)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 327 (335)
+.+.+|..||++|.+|.++.+.++..+ +.-...| . .|++ + ....|.+|+++|
T Consensus 11 p~~~vG~~IG~~G~~I~~i~~e~gI~i-i~~~~~~-~-~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 11 REDLMGLAIGTHGANIQQARKVPGVTA-IDLDEDT-C-TFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp CGGGHHHHHCGGGHHHHHHHTSTTEEE-EEEETTT-T-EEEEEESSHHHHHHHHHHH
T ss_pred CCcceeeEECCChhHHHHHHHHHCCeE-eccCCCc-h-heeeccCCHHHHHHHHHhh
Confidence 456678999999999999999987332 2222222 2 3433 3 245688887665
No 82
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=30.20 E-value=51 Score=31.33 Aligned_cols=106 Identities=18% Similarity=0.104 Sum_probs=56.0
Q ss_pred HHcCCCceEEEEechhcHHHHHHHcCCcc---------------ceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCC
Q 019798 97 ALESSYITKVIHDCKRDSEALYFQFGIKL---------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161 (335)
Q Consensus 97 lLe~~~i~KV~hd~k~D~~~L~~~~gi~l---------------~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~ 161 (335)
.+.+.+.+.||||+=.|+..+++.|--.+ ..++||...+...... .. + ..-||..|..
T Consensus 276 ~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~--~~-~--~~~sL~~l~~-- 348 (430)
T 2a1r_A 276 AIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFK--DI-I--NNTSLAELEK-- 348 (430)
T ss_dssp HHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTT--TT-C--SCCSHHHHHH--
T ss_pred HHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchh--hc-c--CCCCHHHHHH--
Confidence 33334456699999999988776543221 3489998876332111 00 1 1237777765
Q ss_pred cccCcc-c--chhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 019798 162 RYCGIS-Y--QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (335)
Q Consensus 162 ~~L~~~-l--~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~ 218 (335)
+|... . ++-+- . .+....+. ..++.+-|+-||+.+-.++-.|...|..
T Consensus 349 -~l~~~~~~~p~i~~-~---~~~~~y~~----~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 349 -RLKETPFNPPKVES-A---EGFPSYDT----ASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp -HTTSTTCCCCCEEE-C---TTCCCC---------CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred -HHHhCCCCCCeeec-C---CCcccccc----CCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 33211 1 00000 0 00000110 1223345899999999999999888743
No 83
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=25.03 E-value=1.2e+02 Score=31.78 Aligned_cols=53 Identities=8% Similarity=0.028 Sum_probs=32.1
Q ss_pred cccHHhhhcCCcccCcccch--hHHHHHHhcCCCCCCccCCC-CHHHHHHHHhhhhHHHHHHHHH
Q 019798 151 YISFVGLLADPRYCGISYQE--KEEVRVLLRQDPQFWTYRPL-TELMVRAAADDVRFLPYIYHNM 212 (335)
Q Consensus 151 ~~sL~~L~~~~~~L~~~l~~--k~~~~~~~~~~~~~w~~rpL-~~~~~~YAa~Da~~ll~L~~~L 212 (335)
..+|+++++ .+||..-.+ .+++..+ |...+- ....+.|+..||..+++|+.++
T Consensus 410 sysL~~Va~--~~Lg~~K~dv~~~~I~~l-------~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 410 SYTLNAVSA--HFLGEQKEDVHYSIISDL-------QNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp CCCHHHHHH--HHHCCC------CCHHHH-------HTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHH--HhcccCCCCCCHHHHHHH-------HhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899998 898853221 0111111 221111 1456899999999999999887
No 84
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=24.96 E-value=2.6 Score=32.13 Aligned_cols=53 Identities=4% Similarity=-0.076 Sum_probs=38.2
Q ss_pred CCCCCCCCCcccccCCCCHHHHHhhhcCCCCccc----------cccccccccHHHHHHHhhhh
Q 019798 245 WPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNAE 298 (335)
Q Consensus 245 ~~~L~~~~~~l~~~~~~~e~~i~~lAg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 298 (335)
||.-.+...++++..+..++.+.++|...|.+.. ..+.++ ..++.+++....+
T Consensus 24 wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~ 86 (103)
T 2e1f_A 24 ARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFCQT 86 (103)
T ss_dssp HHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHh
Confidence 3333344455666778888999999999997742 456678 9999999887544
No 85
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=23.00 E-value=1.2e+02 Score=27.20 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=54.4
Q ss_pred cCCCceEEEEechhcHHHHHHH-cCCcc---------------ceEeehhHHHHhhhhccCCCCCCCCcccHHhhhcCCc
Q 019798 99 ESSYITKVIHDCKRDSEALYFQ-FGIKL---------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162 (335)
Q Consensus 99 e~~~i~KV~hd~k~D~~~L~~~-~gi~l---------------~~vfDt~lAayLL~~~~~~~~l~~~~~sL~~L~~~~~ 162 (335)
-++++.+|.|..-+|+-.|.+. .|-.+ ..++||...+..+.. + .-||+++++
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~------l---~ggL~~lA~--- 214 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN------L---KGGLQEVAE--- 214 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTT------C---CSCHHHHHH---
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccc------c---CChHHHHHH---
Confidence 3578999998888998765532 12111 348888876544432 1 127888886
Q ss_pred ccCcccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 019798 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (335)
Q Consensus 163 ~L~~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~ 218 (335)
.|+++-. + | ..-|..|+..+...+-+|++.+-+
T Consensus 215 ~L~v~r~---------g---------~-----~HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 215 QLELERI---------G---------P-----QHQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp HTTCCCC---------S---------C-----TTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCCC---------C---------C-----CCcchhHHHHHHHHHHHHHHHHhc
Confidence 4554211 0 0 122889999999999999887754
Done!