Query 019799
Match_columns 335
No_of_seqs 266 out of 939
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.5E-54 3.2E-59 410.7 21.4 215 83-325 47-279 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 4.3E-54 9.3E-59 391.9 13.9 189 123-319 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 3.5E-50 7.6E-55 363.7 20.0 171 135-322 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.7 7.4E-07 1.6E-11 86.9 18.1 136 112-252 2-157 (314)
5 PF14592 Chondroitinas_B: Chon 98.4 3.3E-06 7.2E-11 85.3 13.3 207 110-322 6-257 (425)
6 PF13229 Beta_helix: Right han 98.0 6.1E-05 1.3E-09 63.1 10.6 133 159-323 2-138 (158)
7 PLN02218 polygalacturonase ADP 98.0 0.00018 3.9E-09 73.4 15.7 123 160-303 218-344 (431)
8 PLN03003 Probable polygalactur 98.0 0.00015 3.2E-09 74.4 15.1 99 199-301 186-288 (456)
9 PLN02155 polygalacturonase 97.7 0.00097 2.1E-08 67.3 15.0 123 158-301 169-296 (394)
10 PLN02188 polygalacturonase/gly 97.6 0.0019 4E-08 65.5 15.8 106 158-284 179-285 (404)
11 PLN02793 Probable polygalactur 97.6 0.0014 3.1E-08 67.0 15.0 106 159-285 202-308 (443)
12 PLN03010 polygalacturonase 97.5 0.0054 1.2E-07 62.3 17.2 113 199-319 205-321 (409)
13 PF13229 Beta_helix: Right han 97.5 0.0013 2.8E-08 55.0 10.7 131 157-319 23-158 (158)
14 PF00295 Glyco_hydro_28: Glyco 97.5 0.0013 2.9E-08 64.3 11.9 133 118-285 90-223 (326)
15 PLN02218 polygalacturonase ADP 97.4 0.0076 1.7E-07 61.6 17.4 119 120-274 147-284 (431)
16 TIGR03805 beta_helix_1 paralle 97.4 0.0034 7.5E-08 61.4 13.4 180 137-326 58-288 (314)
17 PF01696 Adeno_E1B_55K: Adenov 97.3 0.019 4.1E-07 57.9 17.8 175 111-324 57-242 (386)
18 PF12708 Pectate_lyase_3: Pect 97.3 0.0043 9.4E-08 55.4 11.8 39 111-150 21-62 (225)
19 PF05048 NosD: Periplasmic cop 97.0 0.017 3.6E-07 53.2 13.6 107 159-298 59-167 (236)
20 PLN02155 polygalacturonase 96.9 0.029 6.3E-07 56.8 15.5 141 121-298 107-268 (394)
21 PF05048 NosD: Periplasmic cop 96.9 0.01 2.3E-07 54.6 11.3 131 158-322 36-168 (236)
22 PLN02480 Probable pectinestera 96.9 0.019 4.1E-07 57.2 13.5 120 110-244 62-216 (343)
23 PLN03010 polygalacturonase 96.9 0.06 1.3E-06 54.8 17.0 151 143-325 147-313 (409)
24 PF00295 Glyco_hydro_28: Glyco 96.8 0.011 2.5E-07 57.8 10.7 108 137-274 62-184 (326)
25 TIGR03808 RR_plus_rpt_1 twin-a 96.8 0.022 4.8E-07 58.4 12.9 157 144-321 123-332 (455)
26 PLN02197 pectinesterase 96.6 0.034 7.4E-07 59.0 13.5 152 63-244 244-443 (588)
27 TIGR03808 RR_plus_rpt_1 twin-a 96.6 0.087 1.9E-06 54.1 15.9 96 110-222 56-156 (455)
28 smart00656 Amb_all Amb_all dom 96.6 0.074 1.6E-06 48.4 13.9 134 141-298 45-188 (190)
29 PLN02793 Probable polygalactur 96.5 0.058 1.3E-06 55.4 14.0 109 136-274 144-269 (443)
30 PF07602 DUF1565: Protein of u 96.2 0.18 3.9E-06 48.1 14.6 189 110-322 17-242 (246)
31 PLN03003 Probable polygalactur 96.2 0.044 9.5E-07 56.5 11.0 70 159-252 190-268 (456)
32 PLN02188 polygalacturonase/gly 96.0 0.1 2.2E-06 53.0 12.5 143 121-299 114-279 (404)
33 PLN02176 putative pectinestera 95.8 0.24 5.1E-06 49.4 14.0 121 110-244 53-207 (340)
34 PLN02682 pectinesterase family 95.5 0.27 5.9E-06 49.5 13.0 197 110-324 84-336 (369)
35 PF00544 Pec_lyase_C: Pectate 95.5 0.12 2.7E-06 47.3 9.9 117 156-296 74-200 (200)
36 PLN02432 putative pectinestera 95.1 0.43 9.4E-06 46.6 12.8 165 110-298 25-229 (293)
37 PLN02416 probable pectinestera 94.9 0.35 7.7E-06 51.0 12.6 116 110-245 244-397 (541)
38 COG5434 PGU1 Endopygalactoruna 94.5 0.43 9.3E-06 50.3 11.9 104 158-285 262-376 (542)
39 PLN02170 probable pectinestera 94.5 0.48 1E-05 49.9 12.1 164 110-298 239-451 (529)
40 PLN02773 pectinesterase 94.5 4.6 9.9E-05 40.0 18.4 166 110-298 19-239 (317)
41 PLN02995 Probable pectinestera 94.4 0.58 1.2E-05 49.4 12.5 118 107-244 231-391 (539)
42 PLN02201 probable pectinestera 94.1 0.73 1.6E-05 48.4 12.6 116 110-245 220-373 (520)
43 PLN02488 probable pectinestera 94.1 0.78 1.7E-05 48.0 12.6 116 110-245 211-364 (509)
44 PLN03043 Probable pectinestera 94.1 0.91 2E-05 47.9 13.2 166 110-298 237-461 (538)
45 PLN02634 probable pectinestera 93.9 1.3 2.7E-05 44.7 13.3 120 110-244 70-233 (359)
46 PLN02708 Probable pectinestera 93.8 0.92 2E-05 48.0 12.7 115 110-244 255-409 (553)
47 PLN02506 putative pectinestera 93.8 0.96 2.1E-05 47.7 12.8 167 110-298 246-458 (537)
48 PLN02304 probable pectinestera 93.7 1.3 2.9E-05 44.8 13.2 120 110-244 89-246 (379)
49 PLN02301 pectinesterase/pectin 93.7 0.97 2.1E-05 47.8 12.7 119 107-244 244-402 (548)
50 PLN02665 pectinesterase family 93.6 1.1 2.4E-05 45.1 12.4 120 110-244 82-238 (366)
51 PLN02745 Putative pectinestera 93.6 1 2.3E-05 48.0 12.7 115 110-244 299-451 (596)
52 PLN02484 probable pectinestera 93.5 1 2.2E-05 48.1 12.4 116 110-244 286-439 (587)
53 PLN02217 probable pectinestera 93.4 1 2.2E-05 48.7 12.5 115 110-244 264-416 (670)
54 PLN02916 pectinesterase family 93.4 1.2 2.6E-05 46.7 12.5 115 110-244 201-356 (502)
55 PF04431 Pec_lyase_N: Pectate 93.4 0.057 1.2E-06 40.3 2.1 18 22-39 23-40 (56)
56 PLN02990 Probable pectinestera 93.2 1.4 3E-05 46.9 12.9 115 110-244 273-426 (572)
57 PLN02933 Probable pectinestera 93.1 1.3 2.8E-05 46.8 12.3 115 110-244 232-384 (530)
58 PLN02313 Pectinesterase/pectin 93.1 1.2 2.7E-05 47.4 12.4 115 110-244 289-441 (587)
59 PLN02314 pectinesterase 92.9 1.2 2.5E-05 47.6 11.9 115 110-244 292-444 (586)
60 PLN02713 Probable pectinestera 92.7 1.5 3.4E-05 46.5 12.5 115 110-244 264-419 (566)
61 PLN02497 probable pectinestera 92.4 2.8 6.2E-05 41.7 13.1 122 110-244 46-201 (331)
62 PLN02468 putative pectinestera 92.0 1.8 3.8E-05 46.0 11.8 115 110-244 272-424 (565)
63 COG5434 PGU1 Endopygalactoruna 91.8 0.54 1.2E-05 49.6 7.6 128 118-256 236-379 (542)
64 PLN02671 pectinesterase 91.6 3.7 8.1E-05 41.3 13.0 119 110-244 73-237 (359)
65 COG3420 NosD Nitrous oxidase a 91.5 1.6 3.4E-05 43.8 10.1 95 135-245 98-192 (408)
66 PF01095 Pectinesterase: Pecti 91.0 1.8 3.9E-05 42.3 10.0 195 110-325 14-268 (298)
67 PRK10531 acyl-CoA thioesterase 89.9 7.3 0.00016 40.1 13.5 104 110-228 96-256 (422)
68 COG3866 PelB Pectate lyase [Ca 86.7 7.4 0.00016 38.6 10.7 115 201-322 116-251 (345)
69 PF14592 Chondroitinas_B: Chon 84.8 2.5 5.4E-05 43.4 6.7 58 265-323 246-323 (425)
70 PF08480 Disaggr_assoc: Disagg 81.5 31 0.00066 32.0 11.6 71 209-280 33-112 (198)
71 PF12708 Pectate_lyase_3: Pect 80.8 25 0.00055 31.0 11.0 29 201-229 112-140 (225)
72 PF03211 Pectate_lyase: Pectat 79.6 6.4 0.00014 37.0 6.9 50 198-248 93-143 (215)
73 PF08480 Disaggr_assoc: Disagg 78.4 8.5 0.00018 35.6 7.1 22 310-331 131-152 (198)
74 PF07822 Toxin_13: Neurotoxin 55.2 3.6 7.7E-05 29.9 -0.2 19 56-74 20-38 (55)
75 TIGR03804 para_beta_helix para 48.4 32 0.00069 23.3 3.7 40 203-244 1-40 (44)
76 PF12541 DUF3737: Protein of u 46.8 2.6E+02 0.0056 27.4 10.8 30 265-298 195-224 (277)
77 COG3420 NosD Nitrous oxidase a 45.4 2.4E+02 0.0052 28.8 10.6 118 159-287 71-196 (408)
78 PRK10123 wcaM putative colanic 44.0 40 0.00086 33.6 4.9 55 163-228 265-319 (464)
79 PF12541 DUF3737: Protein of u 39.8 70 0.0015 31.2 5.8 16 161-176 151-166 (277)
80 PF07602 DUF1565: Protein of u 36.7 1.2E+02 0.0026 29.1 6.9 90 139-251 95-193 (246)
81 PF10880 DUF2673: Protein of u 36.7 21 0.00046 26.9 1.4 27 7-33 7-33 (65)
82 TIGR03804 para_beta_helix para 27.6 1.3E+02 0.0029 20.2 4.2 41 159-221 1-41 (44)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-54 Score=410.66 Aligned_cols=215 Identities=32% Similarity=0.463 Sum_probs=189.4
Q ss_pred CCCCCCCCeeEEEcCCCCCCCCCCCchhHhHhhhCCCCeEEEEeeeeEEEeC------ceEEecCCcEEEecCCceEEeC
Q 019799 83 QAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK------EELIMNSFKTIDGRGASVHIAG 156 (335)
Q Consensus 83 ~ttGG~gG~v~~VT~~~d~~~~~~~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~v~snkTI~G~ga~~~I~~ 156 (335)
+||||.||.+++|++.+| |..++...+|.++|+-+.|+|++. .+|.+.|||||.|.|++++|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 799999999999999998 999999999996666777899887 467789999999999999998
Q ss_pred CCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEe-eCCceEEEeceeecC--------CCCCce
Q 019799 157 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI-FGGSHVWVDHCSLSN--------CNDGLI 227 (335)
Q Consensus 157 G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI-~gs~nVWIDHcs~s~--------~~Dgli 227 (335)
|++|.|+.+.|||||||+|++... ++ ...|+|+| .+++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~-~d---------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQ-GD---------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeecc-CC---------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 679999999999999999997542 10 12599999 568999999999998 689999
Q ss_pred eeeeCCceEEEEcceecccceecccCCCCCc-cCCCcceEEEEeeeecCCCcCCCccccCceEEEEcceeeCCcce--ee
Q 019799 228 DAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMY--AL 304 (335)
Q Consensus 228 dv~~~s~~VTISnn~f~~H~k~~L~G~sd~~-~~d~~~~vT~~~N~f~~~~~~R~Pr~r~G~~HvvNN~y~~~~~y--ai 304 (335)
|+++++++||||||+|++|+|.+|+|.+|+. .+|+..+||+||||| +|+.||+||+|||.+||+||||+....| |+
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 9999999999999999999999999999985 456789999999999 7999999999999999999999976654 55
Q ss_pred ecCCCCeEEEEccEEeCCCCC
Q 019799 305 GGSASPTINSQGNRFVAPNDR 325 (335)
Q Consensus 305 g~~~~~~i~~egN~F~~~~~~ 325 (335)
+.+..++|++|+|||+....+
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~ 279 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEG 279 (345)
T ss_pred eeccceEEEEecceeccCCCC
Confidence 544449999999999996544
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=4.3e-54 Score=391.90 Aligned_cols=189 Identities=40% Similarity=0.624 Sum_probs=160.0
Q ss_pred EEEeeeeEEEeCceEEecCCcEEEecCCceEEeCCCeEEEe-eeccEEEEceEEEecccCCCcceecCCCCCCCCccCCC
Q 019799 123 IIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQ-YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDG 201 (335)
Q Consensus 123 IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~~l~i~-~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~g 201 (335)
+||+++|+|+++.+|.|+|||||+|+|++++|. |+|+.+. +++|||||||+|+++. ++..|+..+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCC
Confidence 345667799999999999999999999999998 6789986 8999999999999741 1122222222234689
Q ss_pred CcEEeeCCceEEEeceeecCC--------CCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeee
Q 019799 202 DGVSIFGGSHVWVDHCSLSNC--------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHF 273 (335)
Q Consensus 202 DaIsI~gs~nVWIDHcs~s~~--------~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f 273 (335)
|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|++|+|+||+|++|+...|..+++|||||||
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999888777779999999999
Q ss_pred cCCCcCCCccccCceEEEEcceeeCCcceeeecCCCCeEEEEccEE
Q 019799 274 GEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRF 319 (335)
Q Consensus 274 ~~~~~~R~Pr~r~G~~HvvNN~y~~~~~yaig~~~~~~i~~egN~F 319 (335)
. ++.+|+||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus 156 ~-~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 A-NTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp E-EEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred C-chhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 5 99999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=3.5e-50 Score=363.71 Aligned_cols=171 Identities=59% Similarity=0.913 Sum_probs=158.7
Q ss_pred ceEEecCCcEEEecCCceEEeCCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEE
Q 019799 135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWV 214 (335)
Q Consensus 135 ~~L~v~snkTI~G~ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWI 214 (335)
.+|.|+|||||+|+|+++.|. |++|+++.++|||||||+|++..+. ++ .++|+|+++++++|||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~~----~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------YG----SDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------CC----CCCCEEEEeCCCeEEE
Confidence 578999999999999999998 7899998899999999999975431 11 4789999999999999
Q ss_pred eceeecCC---------CCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeecCCCcCCCcccc
Q 019799 215 DHCSLSNC---------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR 285 (335)
Q Consensus 215 DHcs~s~~---------~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r 285 (335)
|||+|+|+ .|+++|++.++++||||||+|.+|+|++|+|++|++..+..++||+|||||+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998877666899999999996 8999999999
Q ss_pred CceEEEEcceeeCCcceeeecCCCCeEEEEccEEeCC
Q 019799 286 HGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAP 322 (335)
Q Consensus 286 ~G~~HvvNN~y~~~~~yaig~~~~~~i~~egN~F~~~ 322 (335)
+|++|++||||++|..|++++++++++++|+|||++.
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.73 E-value=7.4e-07 Score=86.89 Aligned_cols=136 Identities=19% Similarity=0.294 Sum_probs=76.8
Q ss_pred hHhhhCCCCe-EEEEeeeeEEEeCceEEec-CCcEEEecCCceEEeC-------CCeEEEeeeccEEEEceEEEecccCC
Q 019799 112 RYAVIQDEPL-WIIFARDMVITLKEELIMN-SFKTIDGRGASVHIAG-------GPCITVQYVTNIIIHGINIHDCKRGG 182 (335)
Q Consensus 112 r~av~~~~P~-~IvF~~~g~I~L~~~L~v~-snkTI~G~ga~~~I~~-------G~~l~i~~~~NVIIrnl~i~~~~p~g 182 (335)
.+|+.+-+|- +|++. .|+-++++.|.|. +++||.|.|..-++.+ +-+|.+ .++||-|+++++++.. +
T Consensus 2 Q~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~--~ 77 (314)
T TIGR03805 2 QEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTK--G 77 (314)
T ss_pred HhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCC--C
Confidence 4566555554 34443 3566666777774 7788887765322221 233444 4667777776666431 1
Q ss_pred Ccc-eecCCC------CCCCC----ccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEEcceecccceecc
Q 019799 183 NAN-VRDSPS------HYGWR----TISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVML 251 (335)
Q Consensus 183 ~~~-v~~~~~------~~g~~----~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~~H~k~~L 251 (335)
.+. ++.+.+ ...|. ....++||.+..++++-|.+|.++...|--|-+ ..|++++|++|.+.+-..+..
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceEE
Confidence 111 110000 00000 013567888888999999999998877744443 467888888888875444443
Q ss_pred c
Q 019799 252 L 252 (335)
Q Consensus 252 ~ 252 (335)
+
T Consensus 157 i 157 (314)
T TIGR03805 157 I 157 (314)
T ss_pred E
Confidence 3
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.42 E-value=3.3e-06 Score=85.31 Aligned_cols=207 Identities=18% Similarity=0.212 Sum_probs=87.6
Q ss_pred hHhHhhhCCCCeEEEEeeeeEEEeCceEEe-cC-----CcEEEec-CCceEEeCCCeEEEeeeccEEEEceEEEecccCC
Q 019799 110 TLRYAVIQDEPLWIIFARDMVITLKEELIM-NS-----FKTIDGR-GASVHIAGGPCITVQYVTNIIIHGINIHDCKRGG 182 (335)
Q Consensus 110 tLr~av~~~~P~~IvF~~~g~I~L~~~L~v-~s-----nkTI~G~-ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g 182 (335)
+|..||.+-.|=-.|+=.+|+-+ ..+|.+ ++ -+||..+ ...+.|.+..+|+| .++.++|.+|.|++..+..
T Consensus 6 ~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~~~~ 83 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGYTPT 83 (425)
T ss_dssp HHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---T
T ss_pred HHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCCCCC
Confidence 48999876444222222345544 235554 32 3777776 34577776667888 4799999999998754322
Q ss_pred CcceecCCCC---CC------------CCc-cCCCCcEEe----eCCceEEEeceeecCC-CCC-ceeee-------eCC
Q 019799 183 NANVRDSPSH---YG------------WRT-ISDGDGVSI----FGGSHVWVDHCSLSNC-NDG-LIDAI-------HGS 233 (335)
Q Consensus 183 ~~~v~~~~~~---~g------------~~~-~~~gDaIsI----~gs~nVWIDHcs~s~~-~Dg-lidv~-------~~s 233 (335)
...+....+. +. +.. ..+.+...+ --++|-=||||+|..- ..| ++-+. .-.
T Consensus 84 ~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~ 163 (425)
T PF14592_consen 84 GAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIA 163 (425)
T ss_dssp TT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS----
T ss_pred CceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccc
Confidence 2111111000 00 000 011112233 1245556799999873 223 23322 123
Q ss_pred ceEEEEcceecc-------cceecccCCCCCccCCCcceEEEEeeeecCCCcCCCc--cccCceEEEEcceeeCCcceee
Q 019799 234 TAITISNNYMTH-------HNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMP--RCRHGYFHVVNNDYTHWEMYAL 304 (335)
Q Consensus 234 ~~VTISnn~f~~-------H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~P--r~r~G~~HvvNN~y~~~~~yai 304 (335)
.+-+|.+|+|.+ ....+.+|.|.....+ -+.++.+||| ++|.+=.= ..+-+.--+.||.|++... .+
T Consensus 164 ~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~es~G-~l 239 (425)
T PF14592_consen 164 NYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRESQG-SL 239 (425)
T ss_dssp ---EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES-SS-EE
T ss_pred cCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCceeEEEeecCCceEeccEEEeccc-eE
Confidence 467899999984 4567888877554333 3789999999 57776533 2234556677777776431 22
Q ss_pred ecCCCCeEEEEccEEeCC
Q 019799 305 GGSASPTINSQGNRFVAP 322 (335)
Q Consensus 305 g~~~~~~i~~egN~F~~~ 322 (335)
-.+-|-.-.++||+|...
T Consensus 240 tlRHGn~n~V~gN~FiGn 257 (425)
T PF14592_consen 240 TLRHGNRNTVEGNVFIGN 257 (425)
T ss_dssp EEEE-SS-EEES-EEEE-
T ss_pred EEecCCCceEeccEEecC
Confidence 222333445566666643
No 6
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.02 E-value=6.1e-05 Score=63.09 Aligned_cols=133 Identities=21% Similarity=0.282 Sum_probs=76.7
Q ss_pred eEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEE
Q 019799 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (335)
Q Consensus 159 ~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTI 238 (335)
||.+....++.|++.+|+++ .++||.+.++..+.|+.|+|..... -+.+ .+..++++
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~-gi~~-~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGY-GIYV-SGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTT-SEEE-ECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCc-EEEE-ecCCCeEE
Confidence 46788889999999999852 4678888888888889999988333 3443 34588888
Q ss_pred EcceecccceecccCCCCCccCCCcceEEEEeeeecCCCcCCCcccc--CceEEEEcceeeCCcceeeecCC--CCeEEE
Q 019799 239 SNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR--HGYFHVVNNDYTHWEMYALGGSA--SPTINS 314 (335)
Q Consensus 239 Snn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r--~G~~HvvNN~y~~~~~yaig~~~--~~~i~~ 314 (335)
++|.|.+......+-.+. .+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++.... .+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 899888777443333222 5677777774 3322122222 23567778887775544443222 447778
Q ss_pred EccEEeCCC
Q 019799 315 QGNRFVAPN 323 (335)
Q Consensus 315 egN~F~~~~ 323 (335)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 888887644
No 7
>PLN02218 polygalacturonase ADPG
Probab=98.01 E-value=0.00018 Score=73.36 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=86.3
Q ss_pred EEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEE
Q 019799 160 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITIS 239 (335)
Q Consensus 160 l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTIS 239 (335)
+.+..++||.|+||+|.. |. + ....|||.+.+++||.|.+|.++.+ |..|.++.++++|+|+
T Consensus 218 i~~~~~~nV~i~~v~I~a--~~------~---------spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~ 279 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTA--PA------D---------SPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQIN 279 (431)
T ss_pred EEEEceeeEEEEEEEEeC--CC------C---------CCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEEE
Confidence 345678899999998873 21 0 1367999999999999999999976 6688999999999999
Q ss_pred cceecccceecccCCCCCcc-CCCcceEEEEeeeecCCCcCCCcccc---CceEEEEcceeeCCccee
Q 019799 240 NNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLVQRMPRCR---HGYFHVVNNDYTHWEMYA 303 (335)
Q Consensus 240 nn~f~~H~k~~L~G~sd~~~-~d~~~~vT~~~N~f~~~~~~R~Pr~r---~G~~HvvNN~y~~~~~ya 303 (335)
+|.+.. ..++-+|+-..+. .+..-+|++.++.|. +. .+.=|++ .|...+-|=.|++..|..
T Consensus 280 n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~-~t-~nGvRIKT~~Gg~G~v~nI~f~ni~m~~ 344 (431)
T PLN02218 280 DITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLS-GT-DNGVRIKTYQGGSGTASNIIFQNIQMEN 344 (431)
T ss_pred eEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEe-cC-CcceEEeecCCCCeEEEEEEEEeEEEEc
Confidence 999953 3456678644332 234568999999994 43 3444554 233455555555655443
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.01 E-value=0.00015 Score=74.40 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=70.1
Q ss_pred CCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEEcceecccceecccCCCCCcc-CCCcceEEEEeeeecCCC
Q 019799 199 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGL 277 (335)
Q Consensus 199 ~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~-~d~~~~vT~~~N~f~~~~ 277 (335)
...|||.+..++||+|.+|.++.+ |..|.++.++++|+|+||.+.. ..++-+|+-.++. .+...+|++.++.|. ++
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-GT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-CC
Confidence 468999999999999999999865 6677888899999999999864 2356677644332 244678999999994 44
Q ss_pred cCCCcccc---CceEEEEcceeeCCcc
Q 019799 278 VQRMPRCR---HGYFHVVNNDYTHWEM 301 (335)
Q Consensus 278 ~~R~Pr~r---~G~~HvvNN~y~~~~~ 301 (335)
.+.=|++ .|...+-|=.|+|..|
T Consensus 263 -~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 263 -MNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred -CcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 3444554 2333444545555443
No 9
>PLN02155 polygalacturonase
Probab=97.71 E-value=0.00097 Score=67.32 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=86.9
Q ss_pred CeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEE
Q 019799 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (335)
Q Consensus 158 ~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VT 237 (335)
..+.+..++||.|+||+|.. |. . ....|||.+..++||+|.+|.+..+-| .|.++.++++|+
T Consensus 169 w~i~~~~~~nv~i~~v~I~~--p~----------~-----~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~ 230 (394)
T PLN02155 169 SHMTLNGCTNVVVRNVKLVA--PG----------N-----SPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFL 230 (394)
T ss_pred eEEEEECeeeEEEEEEEEEC--CC----------C-----CCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEE
Confidence 34566789999999999984 21 0 136799999999999999999988766 778888999999
Q ss_pred EEcceecccceecccCCCCCc-cCCCcceEEEEeeeecCCCcCCCccccC----ceEEEEcceeeCCcc
Q 019799 238 ISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCRH----GYFHVVNNDYTHWEM 301 (335)
Q Consensus 238 ISnn~f~~H~k~~L~G~sd~~-~~d~~~~vT~~~N~f~~~~~~R~Pr~r~----G~~HvvNN~y~~~~~ 301 (335)
|++|.+.. ..++-+|+--.+ ......+|++.++.|. +. .+.=|++. +...|-|=.|.+..|
T Consensus 231 I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~t-~~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 231 ITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-GS-QNGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred EEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-CC-CcEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 99999875 335678875332 2334568999999994 43 34445531 233455555555543
No 10
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.64 E-value=0.0019 Score=65.51 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=77.8
Q ss_pred CeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEE
Q 019799 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (335)
Q Consensus 158 ~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VT 237 (335)
..+.+..++||.|++|+|.. |.. ....|||-+..++||+|.+|.+....| .|.++.++++|+
T Consensus 179 w~i~~~~~~~v~i~~v~I~~--~~~---------------spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~ 240 (404)
T PLN02188 179 FHIALVECRNFKGSGLKISA--PSD---------------SPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVT 240 (404)
T ss_pred eEEEEEccccEEEEEEEEeC--CCC---------------CCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEE
Confidence 34566789999999999973 210 136799999999999999999988766 778888999999
Q ss_pred EEcceecccceecccCCCCCc-cCCCcceEEEEeeeecCCCcCCCccc
Q 019799 238 ISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRC 284 (335)
Q Consensus 238 ISnn~f~~H~k~~L~G~sd~~-~~d~~~~vT~~~N~f~~~~~~R~Pr~ 284 (335)
|+|+.+.. ..++-+|+--.+ .......|++.++.|. ++ .+.=|+
T Consensus 241 I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~t-~~Giri 285 (404)
T PLN02188 241 ITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-GT-TNGIRI 285 (404)
T ss_pred EEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-CC-CcEEEE
Confidence 99998854 345667763222 1233568999999994 43 344455
No 11
>PLN02793 Probable polygalacturonase
Probab=97.62 E-value=0.0014 Score=67.04 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=76.3
Q ss_pred eEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEE
Q 019799 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (335)
Q Consensus 159 ~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTI 238 (335)
.|.+..++||.|++|+|.. |. . ....|||.+..++||+|.+|.+.. .|..|.++.++++|+|
T Consensus 202 ~i~~~~~~nv~i~~l~I~~--p~----------~-----spNTDGIdi~~s~nV~I~n~~I~~-gDDcIaik~~s~nI~I 263 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIA--PA----------T-----SPNTDGIHISASRGVVIKDSIVRT-GDDCISIVGNSSRIKI 263 (443)
T ss_pred EEEEEccCcEEEEEEEEEC--CC----------C-----CCCCCcEeeeccceEEEEeCEEeC-CCCeEEecCCcCCEEE
Confidence 3455678899999999974 21 0 136799999999999999999885 5677888889999999
Q ss_pred EcceecccceecccCCCCCc-cCCCcceEEEEeeeecCCCcCCCcccc
Q 019799 239 SNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCR 285 (335)
Q Consensus 239 Snn~f~~H~k~~L~G~sd~~-~~d~~~~vT~~~N~f~~~~~~R~Pr~r 285 (335)
+||.+.. ..+.-+|+--.+ .......|++.++.|. +. .+.=|++
T Consensus 264 ~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~t-~~GirIK 308 (443)
T PLN02793 264 RNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-NT-DNGVRIK 308 (443)
T ss_pred EEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-CC-CceEEEE
Confidence 9999864 234567764222 2233568999999984 44 3444554
No 12
>PLN03010 polygalacturonase
Probab=97.51 E-value=0.0054 Score=62.31 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=72.4
Q ss_pred CCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEEcceecccceecccCCCCCc-cCCCcceEEEEeeeecCCC
Q 019799 199 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGL 277 (335)
Q Consensus 199 ~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~-~~d~~~~vT~~~N~f~~~~ 277 (335)
...|||-+..++||+|.+|.+... |..|.++.++++++|.++.... ..++-+|+--+. ..+....|+|.++.|. +.
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-QT 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-CC
Confidence 467999999999999999988876 7778888888888887766642 224556764332 2234568999999994 33
Q ss_pred cCCCcccc---CceEEEEcceeeCCcceeeecCCCCeEEEEccEE
Q 019799 278 VQRMPRCR---HGYFHVVNNDYTHWEMYALGGSASPTINSQGNRF 319 (335)
Q Consensus 278 ~~R~Pr~r---~G~~HvvNN~y~~~~~yaig~~~~~~i~~egN~F 319 (335)
.+.=|++ .|...+-|=.|++..|... ..| |.++-+|.
T Consensus 282 -~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~q~Y~ 321 (409)
T PLN03010 282 -TNGARIKTWQGGQGYARNISFENITLINT---KNP-IIIDQQYI 321 (409)
T ss_pred -CcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEEeecc
Confidence 3444554 2334555555666544332 223 45544554
No 13
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.50 E-value=0.0013 Score=54.97 Aligned_cols=131 Identities=23% Similarity=0.245 Sum_probs=77.0
Q ss_pred CCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceE
Q 019799 157 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI 236 (335)
Q Consensus 157 G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~V 236 (335)
+.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.++... ..+.+ ..+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~-~~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYV-SGSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEEC-CS-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEE-EecCCc
Confidence 446777777777888888873 356788888899999999998887 44444 378889
Q ss_pred EEEcceecccce-ecccCCCCCccCCCcceEEEEeeeecCCCcCCCccccC-c--eEEEEcceeeCCcceeeecCCCCe-
Q 019799 237 TISNNYMTHHNK-VMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-G--YFHVVNNDYTHWEMYALGGSASPT- 311 (335)
Q Consensus 237 TISnn~f~~H~k-~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~-G--~~HvvNN~y~~~~~yaig~~~~~~- 311 (335)
+|++|.|.+... ++.+.. ....+++.+|.|. ++.+-.=.+.. . .+-+.+|.+++-..+++....+..
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999987654 554442 1226888899985 33322222222 2 566788888887778885555554
Q ss_pred EEEEccEE
Q 019799 312 INSQGNRF 319 (335)
Q Consensus 312 i~~egN~F 319 (335)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 88888876
No 14
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.47 E-value=0.0013 Score=64.32 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=87.9
Q ss_pred CCCeEEEEeeeeEEEeCceEEecCCcEEEecCCceEEeCCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCc
Q 019799 118 DEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT 197 (335)
Q Consensus 118 ~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~ 197 (335)
..|+.+.|...-.+.++ ++||. -+| ...+.+..++||.|++|+|+....
T Consensus 90 ~rp~~i~~~~~~~~~i~-------~i~~~--nsp-----~w~~~~~~~~nv~i~~i~I~~~~~----------------- 138 (326)
T PF00295_consen 90 RRPRLIRFNNCKNVTIE-------GITIR--NSP-----FWHIHINDCDNVTISNITINNPAN----------------- 138 (326)
T ss_dssp SSSESEEEEEEEEEEEE-------SEEEE--S-S-----SESEEEESEEEEEEESEEEEEGGG-----------------
T ss_pred cccceeeeeeecceEEE-------eeEec--CCC-----eeEEEEEccCCeEEcceEEEecCC-----------------
Confidence 46888888754222221 23332 233 346778789999999999985210
Q ss_pred cCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEEcceecccceecccCCCCCcc-CCCcceEEEEeeeecCC
Q 019799 198 ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEG 276 (335)
Q Consensus 198 ~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~-~d~~~~vT~~~N~f~~~ 276 (335)
....|||-+.+++||.|++|.+... |..|.++.++.+|+|+||.|.. ..++-+|+-.... .....+|+|.++.|. +
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~-~ 215 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII-N 215 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-S
T ss_pred CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-c
Confidence 1368999999999999999999776 7778888777899999999974 3345666432211 112458999999984 4
Q ss_pred CcCCCcccc
Q 019799 277 LVQRMPRCR 285 (335)
Q Consensus 277 ~~~R~Pr~r 285 (335)
+ .|.-|++
T Consensus 216 t-~~gi~iK 223 (326)
T PF00295_consen 216 T-DNGIRIK 223 (326)
T ss_dssp E-SEEEEEE
T ss_pred c-ceEEEEE
Confidence 3 4554553
No 15
>PLN02218 polygalacturonase ADPG
Probab=97.45 E-value=0.0076 Score=61.60 Aligned_cols=119 Identities=19% Similarity=0.315 Sum_probs=82.4
Q ss_pred CeEEEEeeeeEEEeCceEEecC--CcEEEecCCceE-----Ee------CC-CeEEEeeeccEEEEceEEEecccCCCcc
Q 019799 120 PLWIIFARDMVITLKEELIMNS--FKTIDGRGASVH-----IA------GG-PCITVQYVTNIIIHGINIHDCKRGGNAN 185 (335)
Q Consensus 120 P~~IvF~~~g~I~L~~~L~v~s--nkTI~G~ga~~~-----I~------~G-~~l~i~~~~NVIIrnl~i~~~~p~g~~~ 185 (335)
..||.|..- +.|.|.. .=||+|+|+.-- .. .. .-|++.+++|+.|++|++++.
T Consensus 147 ~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS------- 213 (431)
T PLN02218 147 SKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA------- 213 (431)
T ss_pred ccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC-------
Confidence 356666431 3455633 378888885310 00 01 135678999999999999962
Q ss_pred eecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCC-----CCCceeeeeCCceEEEEcceecccceecccCCCCCccC
Q 019799 186 VRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQ 260 (335)
Q Consensus 186 v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~-----~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~ 260 (335)
..=.|.+..++||.|++.++... .|| ||+ ..+++|+|++|.|..-+...-+.+..
T Consensus 214 --------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIaIksgs---- 273 (431)
T PLN02218 214 --------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCISIESGS---- 273 (431)
T ss_pred --------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEEecCCC----
Confidence 12258899999999999998763 344 564 56899999999999888777665432
Q ss_pred CCcceEEEEeeeec
Q 019799 261 DKNMQVTIAFNHFG 274 (335)
Q Consensus 261 d~~~~vT~~~N~f~ 274 (335)
.+|++.++.++
T Consensus 274 ---~nI~I~n~~c~ 284 (431)
T PLN02218 274 ---QNVQINDITCG 284 (431)
T ss_pred ---ceEEEEeEEEE
Confidence 26888888874
No 16
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.37 E-value=0.0034 Score=61.35 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=103.6
Q ss_pred EEe-cCCcEEEecCCceEEeCCCeEEEeeeccEEEEceEEEeccc-----CCCc---------ceecCCCCCCCCccCCC
Q 019799 137 LIM-NSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKR-----GGNA---------NVRDSPSHYGWRTISDG 201 (335)
Q Consensus 137 L~v-~snkTI~G~ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p-----~g~~---------~v~~~~~~~g~~~~~~g 201 (335)
+.+ .+++||.|.+-.- ..+.+|.++.++|++|+++++..... .+.+ .|++. . .++ ...
T Consensus 58 i~v~a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n---~-i~g-~~d 130 (314)
T TIGR03805 58 LLVTSDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDS---Y-VRG-ASD 130 (314)
T ss_pred EEEEeCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECC---E-EEC-CCc
Confidence 444 5666666653210 12346677777777777777752100 0011 11110 0 011 234
Q ss_pred CcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeecCCCcCCC
Q 019799 202 DGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRM 281 (335)
Q Consensus 202 DaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~ 281 (335)
+||.+..++++.|-+|.+.....|..- +.|.++.|.+|.+.+-.-+.++-..+.-..-...++.+++|.|. ++...+
T Consensus 131 ~GIyv~~s~~~~v~nN~~~~n~~GI~i--~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~~n 207 (314)
T TIGR03805 131 AGIYVGQSQNIVVRNNVAEENVAGIEI--ENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNTPN 207 (314)
T ss_pred ccEEECCCCCeEEECCEEccCcceEEE--EecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCCCC
Confidence 589999999999999999887776533 35889999999999866666553222111112348999999995 443321
Q ss_pred ------cc--ccC--c-------eEEEEcceeeCCcceeee-------c----C-------CCCeEEEEccEEeCC-CCC
Q 019799 282 ------PR--CRH--G-------YFHVVNNDYTHWEMYALG-------G----S-------ASPTINSQGNRFVAP-NDR 325 (335)
Q Consensus 282 ------Pr--~r~--G-------~~HvvNN~y~~~~~yaig-------~----~-------~~~~i~~egN~F~~~-~~~ 325 (335)
+- +.. | .+.++||.+.+....++. + . ..-.+.+-+|.|.+. .+|
T Consensus 208 ~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g~~p 287 (314)
T TIGR03805 208 FAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPYPRNISIHDNTFSDGGTNP 287 (314)
T ss_pred CcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCCCcceEEEccEeecCCCCC
Confidence 10 111 2 469999999975443331 0 1 113677788888764 344
Q ss_pred C
Q 019799 326 F 326 (335)
Q Consensus 326 ~ 326 (335)
.
T Consensus 288 ~ 288 (314)
T TIGR03805 288 D 288 (314)
T ss_pred C
Confidence 3
No 17
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.30 E-value=0.019 Score=57.88 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=124.8
Q ss_pred HhHhhhCCCCeEEEEeeeeEEEeCceEEecCCcEEEecCCceEEe--CCCeEEE---------eeeccEEEEceEEEecc
Q 019799 111 LRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA--GGPCITV---------QYVTNIIIHGINIHDCK 179 (335)
Q Consensus 111 Lr~av~~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G~~l~i---------~~~~NVIIrnl~i~~~~ 179 (335)
|-+|+.+-. -|..+-+-+-+++++|.|.+.-+|+|+||.+.|. ++.+|.+ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 777776543 2334444456677899999999999999998873 4555653 4568999999999730
Q ss_pred cCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEEcceecccceecccCCCCCcc
Q 019799 180 RGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT 259 (335)
Q Consensus 180 p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~ 259 (335)
..--++-+...+++.|.-|+|....-=.++.. ....|..|+|..-+|++.-..
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~----- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG----- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-----
Confidence 12346788889999999999998776666653 567899999988888763321
Q ss_pred CCCcceEEEEeeeecCCCcCCCccccCceEEEEcceeeCCcceeeecCCCCeEEEEccEEeCCCC
Q 019799 260 QDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPND 324 (335)
Q Consensus 260 ~d~~~~vT~~~N~f~~~~~~R~Pr~r~G~~HvvNN~y~~~~~yaig~~~~~~i~~egN~F~~~~~ 324 (335)
..++++.+|.| +.+.= =-+..|.+++.+|...+-.-..+- +.+-.+.+|.|..+.+
T Consensus 187 ---~~~lsVk~C~F-ekC~i--gi~s~G~~~i~hn~~~ec~Cf~l~---~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVF-EKCVI--GIVSEGPARIRHNCASECGCFVLM---KGTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheee-eheEE--EEEecCCeEEecceecccceEEEE---cccEEEeccEEeCCCC
Confidence 34788899999 54531 123468899999999886533322 2256778899987765
No 18
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.26 E-value=0.0043 Score=55.36 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=27.3
Q ss_pred HhHhh--h-CCCCeEEEEeeeeEEEeCceEEecCCcEEEecCC
Q 019799 111 LRYAV--I-QDEPLWIIFARDMVITLKEELIMNSFKTIDGRGA 150 (335)
Q Consensus 111 Lr~av--~-~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga 150 (335)
|..|+ . ..+..+|.|- .|+-.++++|.+.|+++|.|.|.
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCC
Confidence 77888 2 3455666665 46888888899999999999876
No 19
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.03 E-value=0.017 Score=53.22 Aligned_cols=107 Identities=23% Similarity=0.248 Sum_probs=75.6
Q ss_pred eEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEEE
Q 019799 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (335)
Q Consensus 159 ~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTI 238 (335)
||.+..++++.|++-.|++ ...||.+..+.+..|..+.|+....|. -+ .++...||
T Consensus 59 GI~~~~s~~~~i~~n~i~~----------------------n~~Gi~l~~s~~~~I~~N~i~~n~~GI-~l-~~s~~~~I 114 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISN----------------------NGYGIYLMGSSNNTISNNTISNNGYGI-YL-YGSSNNTI 114 (236)
T ss_pred EEEEEccCCCEEEeEEEEc----------------------cCCCEEEEcCCCcEEECCEecCCCceE-EE-eeCCceEE
Confidence 5666666666777766663 237899999887799999999988854 32 56788999
Q ss_pred EcceecccceecccCCCCCccCCCcceEEEEeeeecCCCcCCCcc-cc-CceEEEEcceeeC
Q 019799 239 SNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR-CR-HGYFHVVNNDYTH 298 (335)
Q Consensus 239 Snn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr-~r-~G~~HvvNN~y~~ 298 (335)
++|.|.+...++.+-.+. +.++.+|.|. ++..---. +. ...-.+++|.|.+
T Consensus 115 ~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~-~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 115 SNNTISNNGYGIYLSSSS--------NNTITGNTIS-NNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred ECcEEeCCCEEEEEEeCC--------CCEEECeEEe-CCCccceEEeccCCCCEEECCCccC
Confidence 999999777777665443 6788899995 34222222 22 2457899999944
No 20
>PLN02155 polygalacturonase
Probab=96.95 E-value=0.029 Score=56.77 Aligned_cols=141 Identities=18% Similarity=0.296 Sum_probs=93.0
Q ss_pred eEEEEeeeeEEEeCceEEecCCcEEEecCCceEEe--CC-------CeEEEeeeccEEEEceEEEecccCCCcceecCCC
Q 019799 121 LWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA--GG-------PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPS 191 (335)
Q Consensus 121 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G-------~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~ 191 (335)
.||.|..- +.+.|.. =||+|||..---. .+ ..|.+..++||.|++|++++.
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS------------- 166 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS------------- 166 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-------------
Confidence 46666431 3455544 6899998642100 00 236788999999999999862
Q ss_pred CCCCCccCCCCcEEeeCCceEEEeceeecCC-----CCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceE
Q 019799 192 HYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQV 266 (335)
Q Consensus 192 ~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~-----~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~v 266 (335)
..=.|.+.+++||.|+++++... .|| ||+ ..+++|+|++|.+..-+....+++.. -+|
T Consensus 167 --------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 167 --------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred --------CCeEEEEECeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 12258888999999999999654 354 464 56899999999999988887777542 267
Q ss_pred EEEeeeecCCC------cCCCc-cccCceEEEEcceeeC
Q 019799 267 TIAFNHFGEGL------VQRMP-RCRHGYFHVVNNDYTH 298 (335)
Q Consensus 267 T~~~N~f~~~~------~~R~P-r~r~G~~HvvNN~y~~ 298 (335)
++.++.++.+. ..+.+ .-..-.+.|.|+.+.+
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 77777664211 11222 1111256777888876
No 21
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.93 E-value=0.01 Score=54.57 Aligned_cols=131 Identities=22% Similarity=0.188 Sum_probs=95.0
Q ss_pred CeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeeeeCCceEE
Q 019799 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (335)
Q Consensus 158 ~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VT 237 (335)
.++.+..++++.|++.+|++ ...||.+..++++-|..|.++.+..|.. + ..+.+.|
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~----------------------~~~GI~~~~s~~~~i~~n~i~~n~~Gi~-l-~~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISN----------------------NRYGIHLMGSSNNTIENNTISNNGYGIY-L-MGSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEEC----------------------CCeEEEEEccCCCEEEeEEEEccCCCEE-E-EcCCCcE
Confidence 45677788999999998874 2467999999999999999999987753 3 3455559
Q ss_pred EEcceecccceecccCCCCCccCCCcceEEEEeeeecCCCcCCCccccC-ceEEEEcceeeCCcceeee-cCCCCeEEEE
Q 019799 238 ISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-GYFHVVNNDYTHWEMYALG-GSASPTINSQ 315 (335)
Q Consensus 238 ISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~-G~~HvvNN~y~~~~~yaig-~~~~~~i~~e 315 (335)
|++|.|.+...+.++-.+. ..++..|.|. +. ..--.+.. ....+.+|.+.+-..|+|. ......-.+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~~-~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTIS-NN-GYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEEe-CC-CEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999999877776665443 4688888884 33 22223332 4678889999987667777 5555667888
Q ss_pred ccEEeCC
Q 019799 316 GNRFVAP 322 (335)
Q Consensus 316 gN~F~~~ 322 (335)
+|+|.+.
T Consensus 162 ~N~f~N~ 168 (236)
T PF05048_consen 162 NNNFNNS 168 (236)
T ss_pred CCCccCE
Confidence 9999444
No 22
>PLN02480 Probable pectinesterase
Probab=96.91 E-value=0.019 Score=57.16 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=79.1
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee---------CCCeEEEeeeccEEEEc
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA---------GGPCITVQYVTNIIIHG 172 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~---------~G~~l~i~~~~NVIIrn 172 (335)
|+.+||.+ +..+++||=..|+ .++.|.| ++|+||.|.+..-+ |. .+.-+++ .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~Gv--Y~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGV--YREKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcE--EEEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78888753 2346666666674 4477877 67899999885432 33 1234455 689999999
Q ss_pred eEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCCCc-----------------eeeeeCCc
Q 019799 173 INIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIHGST 234 (335)
Q Consensus 173 l~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~Dgl-----------------idv~~~s~ 234 (335)
|+|++..+.|.. ...++-|+-+. .+.++-+.+|.|....|=| +|.+.|.-
T Consensus 139 LTf~Nta~~g~~------------~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VDFIFG~g 206 (343)
T PLN02480 139 ISIRNDAPTGMA------------FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFIFGRG 206 (343)
T ss_pred eEEEecCCCCCC------------CCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeeeEEccce
Confidence 999985432211 01234566664 5789999999998765555 56666666
Q ss_pred eEEEEcceec
Q 019799 235 AITISNNYMT 244 (335)
Q Consensus 235 ~VTISnn~f~ 244 (335)
..-+.+|.+.
T Consensus 207 ~a~fe~C~i~ 216 (343)
T PLN02480 207 RSIFHNCEIF 216 (343)
T ss_pred eEEEEccEEE
Confidence 6777777775
No 23
>PLN03010 polygalacturonase
Probab=96.86 E-value=0.06 Score=54.80 Aligned_cols=151 Identities=21% Similarity=0.266 Sum_probs=91.9
Q ss_pred cEEEecCCceEEeCCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCC
Q 019799 143 KTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC 222 (335)
Q Consensus 143 kTI~G~ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~ 222 (335)
=||+|+|..- - ..|++.+++|+.|++|++++. ..=.|.+.++++|.|++.++...
T Consensus 147 G~IDG~G~~w--w--~~l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~ 201 (409)
T PLN03010 147 GTIDGRGSSF--W--EALHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAP 201 (409)
T ss_pred eEEeCCCccc--c--ceEEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCC
Confidence 4555655441 1 137788999999999999862 12258888999999999998753
Q ss_pred -----CCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeecCC----CcCCCcc-ccCceEEEE
Q 019799 223 -----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEG----LVQRMPR-CRHGYFHVV 292 (335)
Q Consensus 223 -----~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~----~~~R~Pr-~r~G~~Hvv 292 (335)
.|| ||+ ..+++|+|++|.+..-+...-+.+..+ ...|+...+..+.+ ....... --.-.+++.
T Consensus 202 ~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~ 274 (409)
T PLN03010 202 ETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVT 274 (409)
T ss_pred CCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEE
Confidence 454 464 568999999999999988777765321 23555555543311 0001000 001246777
Q ss_pred cceeeCCc-ceeee---cC--CCCeEEEEccEEeCCCCC
Q 019799 293 NNDYTHWE-MYALG---GS--ASPTINSQGNRFVAPNDR 325 (335)
Q Consensus 293 NN~y~~~~-~yaig---~~--~~~~i~~egN~F~~~~~~ 325 (335)
|+.+++-. ...|- ++ .-..|.+|+-.+++...|
T Consensus 275 n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~p 313 (409)
T PLN03010 275 HCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNP 313 (409)
T ss_pred eeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCcc
Confidence 77777632 11121 11 113566777777766554
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.77 E-value=0.011 Score=57.80 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=74.6
Q ss_pred EEecCCcEEEecCCceEE-e---------CCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEe
Q 019799 137 LIMNSFKTIDGRGASVHI-A---------GGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI 206 (335)
Q Consensus 137 L~v~snkTI~G~ga~~~I-~---------~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI 206 (335)
+.+...=||+|+|..-.- . .-..|.+.+++|+.|++|++++. ..=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns---------------------p~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS---------------------PFWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES----------------------SSESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC---------------------CeeEEEE
Confidence 455444699999873100 0 01246788999999999999862 1125888
Q ss_pred eCCceEEEeceeecCC-----CCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeec
Q 019799 207 FGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (335)
Q Consensus 207 ~gs~nVWIDHcs~s~~-----~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~ 274 (335)
..++||+|++.++... .|| ||+ .++++|+|.+|.+...+...-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 9999999999998653 455 464 468999999999999887765554321 7888888885
No 25
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.76 E-value=0.022 Score=58.39 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=86.6
Q ss_pred EEEecCCceEEeCCCeEEEeeeccEEEEceEEEecc------cCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEece
Q 019799 144 TIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCK------RGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHC 217 (335)
Q Consensus 144 TI~G~ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~------p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHc 217 (335)
||+|.|.+-.-.+ .+|.++.++++.|++.+|++.- ......+.+. .. .+ ....+|.++.+++..|.++
T Consensus 123 tIdGsG~dl~~rd-AgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N--~I--~g-~~~~~I~lw~S~g~~V~~N 196 (455)
T TIGR03808 123 TLDGGGIPLPQRR-GLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGN--TI--TQ-IAVTAIVSFDALGLIVARN 196 (455)
T ss_pred EEEeCCCcccCCC-CEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecc--eE--ec-cccceEEEeccCCCEEECC
Confidence 5666665432222 3567778888888888887531 0000111110 00 00 1233477777888888888
Q ss_pred eecCCCCCceeee-----------------------------------eCCceEEEEcceecccceecccCCCCCccCCC
Q 019799 218 SLSNCNDGLIDAI-----------------------------------HGSTAITISNNYMTHHNKVMLLGHSDTFTQDK 262 (335)
Q Consensus 218 s~s~~~Dglidv~-----------------------------------~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~ 262 (335)
+++.+.|+.|-+. ..+.+++|+.|.++++.+--+.+.+.
T Consensus 197 ~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nss------ 270 (455)
T TIGR03808 197 TIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSA------ 270 (455)
T ss_pred EEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcc------
Confidence 8888888544432 23667888888888877333333221
Q ss_pred cceEEEEeeeecCCCcCCCccccC-c----e----EEEEcceeeCC-cceee-ecCCCCeE-EEEccEEeC
Q 019799 263 NMQVTIAFNHFGEGLVQRMPRCRH-G----Y----FHVVNNDYTHW-EMYAL-GGSASPTI-NSQGNRFVA 321 (335)
Q Consensus 263 ~~~vT~~~N~f~~~~~~R~Pr~r~-G----~----~HvvNN~y~~~-~~yai-g~~~~~~i-~~egN~F~~ 321 (335)
.++.|..|.|. ++|+ + | .-+.||.++.- ..|++ ...++..+ .++||...+
T Consensus 271 -s~~~i~~N~~~--------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 271 -SNIQITGNSVS--------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred -cCcEEECcEee--------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 14566666662 2344 2 1 23567776643 34666 23344444 557888765
No 26
>PLN02197 pectinesterase
Probab=96.60 E-value=0.034 Score=58.96 Aligned_cols=152 Identities=26% Similarity=0.407 Sum_probs=95.6
Q ss_pred Ccccccc--cccccCCCccccCCCCCCCCCee---EEEcCCCCCCCCCCCch---hHhHhhhC----CCCeEEEEeeeeE
Q 019799 63 DPKWEEN--RQQLADCAIGFGKQAIGGKDGKI---YVVTDSGDDDPVNPKPG---TLRYAVIQ----DEPLWIIFARDMV 130 (335)
Q Consensus 63 ~~~w~~~--r~~la~~a~GfG~~ttGG~gG~v---~~VT~~~d~~~~~~~pG---tLr~av~~----~~P~~IvF~~~g~ 130 (335)
.|.|-.. |+-|. +.+.|.++-||.++.+ ++|- . .+.| |+.+||.. ...++|||=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa---~-----dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVA---K-----DGSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEc---C-----CCCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 5888754 55453 4555667777776643 3332 1 2455 67788853 3346777767775
Q ss_pred EEeCceEEe---cCCcEEEecCCceEEe---------CCC------eEEEeeeccEEEEceEEEecccCCCcceecCCCC
Q 019799 131 ITLKEELIM---NSFKTIDGRGASVHIA---------GGP------CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSH 192 (335)
Q Consensus 131 I~L~~~L~v---~snkTI~G~ga~~~I~---------~G~------~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~ 192 (335)
..+.+.| ++|+|+.|.|..-+|. +|. -+. ..+++++.|||.|++.. |+
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~-v~~~~F~a~nitf~Nta--g~--------- 379 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQ-VESEGFMAKWIGFKNTA--GP--------- 379 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEE-EECCcEEEEEeEEEeCC--CC---------
Confidence 4577777 4799999998764322 221 112 36899999999999742 11
Q ss_pred CCCCccCCCCcEEee-CCceEEEeceeecCCCC-----------------CceeeeeCCceEEEEcceec
Q 019799 193 YGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIHGSTAITISNNYMT 244 (335)
Q Consensus 193 ~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~D-----------------glidv~~~s~~VTISnn~f~ 244 (335)
.+.-|+-+. .+...-+.+|+|....| |.+|.+.|.-..-+++|.+.
T Consensus 380 ------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 443 (588)
T PLN02197 380 ------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV 443 (588)
T ss_pred ------CCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence 123455554 36888888888876544 44566666667788888874
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.60 E-value=0.087 Score=54.15 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=59.8
Q ss_pred hHhHhhhCCC-C-eEEEEeeeeEEEeCceEEecCCcEEEecCCce--EEeCCCeEE-EeeeccEEEEceEEEecccCCCc
Q 019799 110 TLRYAVIQDE-P-LWIIFARDMVITLKEELIMNSFKTIDGRGASV--HIAGGPCIT-VQYVTNIIIHGINIHDCKRGGNA 184 (335)
Q Consensus 110 tLr~av~~~~-P-~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~--~I~~G~~l~-i~~~~NVIIrnl~i~~~~p~g~~ 184 (335)
.|..|+.+-. | -.|++.. |+- +...|.+.++.||.|+.... .|.++.++. -..++||-|++++|++ +|..
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdG---sG~d 130 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDG---GGIP 130 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEe---CCCc
Confidence 3777775421 2 3455554 221 23678889999999985442 243333333 3579999999999985 1211
Q ss_pred ceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCC
Q 019799 185 NVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC 222 (335)
Q Consensus 185 ~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~ 222 (335)
+ ....-+|.+.+++++-|.+|++...
T Consensus 131 --------l----~~rdAgI~v~~a~~v~Iedn~L~gs 156 (455)
T TIGR03808 131 --------L----PQRRGLIHCQGGRDVRITDCEITGS 156 (455)
T ss_pred --------c----cCCCCEEEEccCCceEEEeeEEEcC
Confidence 1 1223367887788888888888765
No 28
>smart00656 Amb_all Amb_all domain.
Probab=96.58 E-value=0.074 Score=48.42 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=81.3
Q ss_pred CCcEEEecCCceEEeCCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCc-EEee-CCceEEEecee
Q 019799 141 SFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG-VSIF-GGSHVWVDHCS 218 (335)
Q Consensus 141 snkTI~G~ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDa-IsI~-gs~nVWIDHcs 218 (335)
-|++|.+..... ..++-+|.+..++||+|-+..|....+.+. + ....|+ +.+. ++.+|-|-.|.
T Consensus 45 rnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~~~----------~---~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVTGF----------G---DDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceeccC----------C---CCCCCccEEECcccccEEEECce
Confidence 577777753321 123457888899999999999986321110 0 112344 4444 46777777777
Q ss_pred ecCCCCCceeeeeCC------ceEEEEcceecccc-eecccCCCCCccCCCcceEEEEeeeecCCCcCCCcccc-CceEE
Q 019799 219 LSNCNDGLIDAIHGS------TAITISNNYMTHHN-KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR-HGYFH 290 (335)
Q Consensus 219 ~s~~~Dglidv~~~s------~~VTISnn~f~~H~-k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r-~G~~H 290 (335)
|....-+++-....+ -.||+.+|+|.+.. +..++.. . ++-+.+|+| .+..+-.--++ .+.+.
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~--------g-~~hv~NN~~-~n~~~~~~~~~~~~~v~ 180 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF--------G-YVHVYNNYY-TGWTSYAIGGRMGATIL 180 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccC--------C-EEEEEeeEE-eCcccEeEecCCCcEEE
Confidence 765443333322212 27999999998743 4444432 1 688889999 45433222222 35899
Q ss_pred EEcceeeC
Q 019799 291 VVNNDYTH 298 (335)
Q Consensus 291 vvNN~y~~ 298 (335)
+.||||++
T Consensus 181 ~E~N~F~~ 188 (190)
T smart00656 181 SEGNYFEA 188 (190)
T ss_pred EECeEEEC
Confidence 99999986
No 29
>PLN02793 Probable polygalacturonase
Probab=96.50 E-value=0.058 Score=55.42 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=77.1
Q ss_pred eEEecCCcEEEecCCceE-----EeC-------CCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCc
Q 019799 136 ELIMNSFKTIDGRGASVH-----IAG-------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG 203 (335)
Q Consensus 136 ~L~v~snkTI~G~ga~~~-----I~~-------G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDa 203 (335)
.|.|...=||+|+|..-- ... -.-|.+.+++||.|++|++++. ..=.
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------------------p~~~ 202 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------------------QQMH 202 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---------------------CCeE
Confidence 455544468888886421 000 1136788999999999999862 1224
Q ss_pred EEeeCCceEEEeceeecCC-----CCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeec
Q 019799 204 VSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (335)
Q Consensus 204 IsI~gs~nVWIDHcs~s~~-----~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~ 274 (335)
+.+.+++||.|++.++... .|| ||+ ..+++|+|++|.+...+....+.+.. .+|++.++.++
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 7888999999999999753 454 464 57899999999999988777775432 26788777763
No 30
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.20 E-value=0.18 Score=48.08 Aligned_cols=189 Identities=19% Similarity=0.212 Sum_probs=108.9
Q ss_pred hHhHhhhCCCCeEEEEeeeeEEEeC----ceEEecCCcEEEecCCc-----eEEeC--------CCe-------EEEeee
Q 019799 110 TLRYAVIQDEPLWIIFARDMVITLK----EELIMNSFKTIDGRGAS-----VHIAG--------GPC-------ITVQYV 165 (335)
Q Consensus 110 tLr~av~~~~P~~IvF~~~g~I~L~----~~L~v~snkTI~G~ga~-----~~I~~--------G~~-------l~i~~~ 165 (335)
||.+|+.+-.|-.+|+=..|+-+-. -+|.+.+.+||.|..+. +.+.+ |.+ ++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 6778887655544333345554432 25777888888885332 11111 211 445567
Q ss_pred ccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCC-CCCceeee----eCCceEEEEc
Q 019799 166 TNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-NDGLIDAI----HGSTAITISN 240 (335)
Q Consensus 166 ~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~-~Dglidv~----~~s~~VTISn 240 (335)
++..|+.++|++..+ ..+-||.|.++ +.-|..|+|..+ .+|..... .....++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 888888888885211 24668999887 888899999997 55543311 2345677888
Q ss_pred ceecccceecccCCCCCccCCCcceEEEEeeeecCCCc-----CCCccccCc-eEEEEcceeeCCcceeeecC--CCCeE
Q 019799 241 NYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV-----QRMPRCRHG-YFHVVNNDYTHWEMYALGGS--ASPTI 312 (335)
Q Consensus 241 n~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~-----~R~Pr~r~G-~~HvvNN~y~~~~~yaig~~--~~~~i 312 (335)
|.+.....+.-+-.... . ....+-+|++.++.. ...|-+..+ ...+-||.+.+...|.+.-. ..-++
T Consensus 158 N~~~~~~~Gi~i~~~~~-~----~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l 232 (246)
T PF07602_consen 158 NSIYFNKTGISISDNAA-P----VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTL 232 (246)
T ss_pred ceEEecCcCeEEEcccC-C----ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeE
Confidence 87765433222211110 1 112345566642211 112444332 33467899998888888663 33588
Q ss_pred EEEccEEeCC
Q 019799 313 NSQGNRFVAP 322 (335)
Q Consensus 313 ~~egN~F~~~ 322 (335)
++.||-...-
T Consensus 233 ~a~gN~ld~~ 242 (246)
T PF07602_consen 233 YAVGNQLDHN 242 (246)
T ss_pred EEeCCccCCC
Confidence 9999987643
No 31
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.16 E-value=0.044 Score=56.51 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=49.9
Q ss_pred eEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeC-CceEEEeceeecCCCCCceeee-------
Q 019799 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFG-GSHVWVDHCSLSNCNDGLIDAI------- 230 (335)
Q Consensus 159 ~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~g-s~nVWIDHcs~s~~~Dglidv~------- 230 (335)
||-+..++||.|+|-.|. .+.|+|+|.. ++||+|.+|++..+. | |.+.
T Consensus 190 GIDi~~S~nV~I~n~~I~----------------------tGDDCIaiksgs~NI~I~n~~c~~GH-G-ISIGSlg~~g~ 245 (456)
T PLN03003 190 GIDVGASSNVVIQDCIIA----------------------TGDDCIAINSGTSNIHISGIDCGPGH-G-ISIGSLGKDGE 245 (456)
T ss_pred cEeecCcceEEEEecEEe----------------------cCCCeEEeCCCCccEEEEeeEEECCC-C-eEEeeccCCCC
Confidence 355655666666666664 3689999985 689999999987653 3 3332
Q ss_pred -eCCceEEEEcceecccceeccc
Q 019799 231 -HGSTAITISNNYMTHHNKVMLL 252 (335)
Q Consensus 231 -~~s~~VTISnn~f~~H~k~~L~ 252 (335)
.+..+|+|+||.|.+-..++.|
T Consensus 246 ~~~V~NV~v~n~~~~~T~nGvRI 268 (456)
T PLN03003 246 TATVENVCVQNCNFRGTMNGARI 268 (456)
T ss_pred cceEEEEEEEeeEEECCCcEEEE
Confidence 1257999999999987666555
No 32
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=95.97 E-value=0.1 Score=53.04 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=93.1
Q ss_pred eEEEEeeeeEEEeCceEEecCCcEEEecCCceE------Ee-C----CCeEEEeeeccEEEEceEEEecccCCCcceecC
Q 019799 121 LWIIFARDMVITLKEELIMNSFKTIDGRGASVH------IA-G----GPCITVQYVTNIIIHGINIHDCKRGGNANVRDS 189 (335)
Q Consensus 121 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~------I~-~----G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~ 189 (335)
.||.|.. .+.|.|...=||+|+|..-- .. + -.-|.+..++||.|++|++++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777641 13466656778999986310 00 0 1245678899999999999962
Q ss_pred CCCCCCCccCCCCcEEeeCCceEEEeceeecCC-----CCCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcc
Q 019799 190 PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNM 264 (335)
Q Consensus 190 ~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~-----~Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~ 264 (335)
..=.|.+..++||.|++.++... .|| ||+ ..+++|+|.+|.|..-+...-+++.. -
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 12258888999999999998763 344 564 57899999999999988877775432 1
Q ss_pred eEEEEeeeecCCC------cCCCcc-ccCceEEEEcceeeCC
Q 019799 265 QVTIAFNHFGEGL------VQRMPR-CRHGYFHVVNNDYTHW 299 (335)
Q Consensus 265 ~vT~~~N~f~~~~------~~R~Pr-~r~G~~HvvNN~y~~~ 299 (335)
+|++.++.++.+. ..+.+- -....+.+-|+.+++-
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t 279 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGT 279 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECC
Confidence 6777777663211 011010 0112467778887763
No 33
>PLN02176 putative pectinesterase
Probab=95.81 E-value=0.24 Score=49.40 Aligned_cols=121 Identities=19% Similarity=0.267 Sum_probs=76.0
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEEe---CC------CeEEEeeeccEEEEce
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA---GG------PCITVQYVTNIIIHGI 173 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~---~G------~~l~i~~~~NVIIrnl 173 (335)
|+.+||.. +..+++||-+.|+- .+.|.| ++|+||.|.|...+|. ++ +.+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 67777743 23466677667744 477777 5799999998764432 11 23344 6899999999
Q ss_pred EEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeeeCCce
Q 019799 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTA 235 (335)
Q Consensus 174 ~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~~s~~ 235 (335)
.|++..+..+ + - +..++-|+-+. .+..+-+.+|.|-... .|.+|.+.|.-.
T Consensus 130 T~~Nt~~~~~------~--~---~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~ 198 (340)
T PLN02176 130 TFKNTYNIAS------N--S---SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQ 198 (340)
T ss_pred EEEeCCCccC------C--C---CCCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEEecEEEecccEEecCce
Confidence 9997542110 0 0 01233455554 2578888888887644 445566666666
Q ss_pred EEEEcceec
Q 019799 236 ITISNNYMT 244 (335)
Q Consensus 236 VTISnn~f~ 244 (335)
.-+++|.+.
T Consensus 199 a~Fe~C~I~ 207 (340)
T PLN02176 199 SIFEGCTLK 207 (340)
T ss_pred EEEeccEEE
Confidence 677788775
No 34
>PLN02682 pectinesterase family protein
Probab=95.46 E-value=0.27 Score=49.52 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=105.2
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee----------CC--------CeEEEe
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA----------GG--------PCITVQ 163 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~----------~G--------~~l~i~ 163 (335)
|+.+||.. +..+++|+=..|+ .++.|.| ++|+||.|.|..-+ |. +| +-+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 67777743 2235555555664 4577777 68999999987633 32 11 11233
Q ss_pred eeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CC
Q 019799 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DG 225 (335)
Q Consensus 164 ~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dg 225 (335)
.+++++.+||.|++..+.. ++ | ..+.-|+.+. .+.++-+.+|.|-... .|
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG 228 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEG 228 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcc
Confidence 6899999999999753210 00 1 1223344444 3688888888887654 45
Q ss_pred ceeeeeCCceEEEEcceecc--cceecccCCCCCccCCCcceEEEEeeeecCCC----cCCCccccCceEEEEcceeeC-
Q 019799 226 LIDAIHGSTAITISNNYMTH--HNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGL----VQRMPRCRHGYFHVVNNDYTH- 298 (335)
Q Consensus 226 lidv~~~s~~VTISnn~f~~--H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~----~~R~Pr~r~G~~HvvNN~y~~- 298 (335)
.+|.+.|.-..-+.+|.+.- ...+.+--++-.. .+...-..|+++-+. .. -+| |.-.+..+-+.|.++.+
T Consensus 229 ~VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~~-~~~~~GfvF~~C~it-g~g~~yLGR-pW~~yarvVf~~t~m~~~ 305 (369)
T PLN02682 229 SVDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQS-VLEDTGFSFVNCKVT-GSGALYLGR-AWGTFSRVVFAYTYMDNI 305 (369)
T ss_pred cccEEecCceEEEEccEEEEecCCCeEEecCCCCC-CCCCceEEEEeeEec-CCCceEeec-CCCCcceEEEEeccCCCc
Confidence 56666677777778887752 1112222111000 111223456666652 21 022 22225567777887764
Q ss_pred -----CcceeeecCCCCeEEEEccEEeCCCC
Q 019799 299 -----WEMYALGGSASPTINSQGNRFVAPND 324 (335)
Q Consensus 299 -----~~~yaig~~~~~~i~~egN~F~~~~~ 324 (335)
|..+..........+.|-|-+-++.+
T Consensus 306 I~p~GW~~w~~~~~~~t~~faEy~ntGpGa~ 336 (369)
T PLN02682 306 IIPRGWYNWGDPNREMTVFYGQYKCTGPGAN 336 (369)
T ss_pred CcCcccCcCCCCCCCCceEEEEecccCCCCC
Confidence 33232222223334667555555544
No 35
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.45 E-value=0.12 Score=47.29 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCc-EEee-CCceEEEeceeecCCCCCceee----
Q 019799 156 GGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG-VSIF-GGSHVWVDHCSLSNCNDGLIDA---- 229 (335)
Q Consensus 156 ~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDa-IsI~-gs~nVWIDHcs~s~~~Dglidv---- 229 (335)
++-+|.+.+++||+|-|..|........ ....|+ |.+. ++++|=|-+|-|......++-.
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~ 139 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDS 139 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTT
T ss_pred CCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCCC
Confidence 3446888899999999999997521100 012343 6665 5788888888887643333221
Q ss_pred --eeCCceEEEEcceecccc-eecccCCCCCccCCCcceEEEEeeeecCCCcCCCccccC-ceEEEEccee
Q 019799 230 --IHGSTAITISNNYMTHHN-KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-GYFHVVNNDY 296 (335)
Q Consensus 230 --~~~s~~VTISnn~f~~H~-k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~-G~~HvvNN~y 296 (335)
......||+.+|+|.+.. +..++... ++-+.+|+|- +..+..=.++. +.+-+-||||
T Consensus 140 ~~~~~~~~vT~hhN~f~~~~~R~P~~r~G---------~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 140 NSTDRGLRVTFHHNYFANTNSRNPRVRFG---------YVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CGGGTTEEEEEES-EEEEEEE-TTEECSC---------EEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred ccccCCceEEEEeEEECchhhCCCccccc---------EEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 122369999999998744 44444321 6889999983 55555444443 4788889887
No 36
>PLN02432 putative pectinesterase
Probab=95.06 E-value=0.43 Score=46.63 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=91.3
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEEe---C------CCeEEEeeeccEEEEce
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA---G------GPCITVQYVTNIIIHGI 173 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~---~------G~~l~i~~~~NVIIrnl 173 (335)
|+.+||.. +..+++||=..| ...+.|.| ++|+||.|.+..-++. + .+.+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G--~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPG--IYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCc--eeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 56677743 223455555556 44577777 6899999998664332 1 122333 6899999999
Q ss_pred EEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCC-----------------CceeeeeCCce
Q 019799 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIHGSTA 235 (335)
Q Consensus 174 ~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~D-----------------glidv~~~s~~ 235 (335)
.|++..+ .++-|+.+. .+.++-+.+|.|....| |.+|.+.|.-.
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~g~ 163 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAA 163 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecCce
Confidence 9997421 112344444 35788888888876544 44555566666
Q ss_pred EEEEcceecccc--eecccCCCCCccCCCcceEEEEeeeecCCC----cCCCccccCceEEEEcceeeC
Q 019799 236 ITISNNYMTHHN--KVMLLGHSDTFTQDKNMQVTIAFNHFGEGL----VQRMPRCRHGYFHVVNNDYTH 298 (335)
Q Consensus 236 VTISnn~f~~H~--k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~----~~R~Pr~r~G~~HvvNN~y~~ 298 (335)
.-+.+|.|.--. .+.+.-.+... .+...-..|+++-+. .. -+| |.-.+..+-+.|.++..
T Consensus 164 a~Fe~c~i~s~~~~~g~itA~~r~~-~~~~~Gfvf~~c~it-g~g~~yLGR-pW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 164 SLFEKCHLHSLSPNNGAITAQQRTS-ASENTGFTFLGCKLT-GAGTTYLGR-PWGPYSRVVFALSYMSS 229 (293)
T ss_pred EEEEeeEEEEecCCCCeEEecCCCC-CCCCceEEEEeeEEc-ccchhhccC-CCCCccEEEEEecccCC
Confidence 677777775211 11111111110 111223566666652 21 112 33234566677777654
No 37
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.92 E-value=0.35 Score=50.97 Aligned_cols=116 Identities=22% Similarity=0.348 Sum_probs=76.8
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee------CC------CeEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G------~~l~i~~~~NVI 169 (335)
|+.+||.. ...++||+=+.|+ ..+.+.| ++|+||.|.|...+ |. +| +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~Gv--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGV--YEENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCce--eEEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778753 4457777777774 4477777 57999999997644 33 22 12334 689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.+||.|++.. |+ ..+-|+-+. .+..+-+-+|.|.... .|.+|.+-
T Consensus 321 a~nitf~Nta--g~---------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 383 (541)
T PLN02416 321 ARDITIENTA--GP---------------EKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIF 383 (541)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceee
Confidence 9999999742 11 122344443 2577778888876543 45677777
Q ss_pred CCceEEEEcceecc
Q 019799 232 GSTAITISNNYMTH 245 (335)
Q Consensus 232 ~s~~VTISnn~f~~ 245 (335)
|.-.+-+++|.+.-
T Consensus 384 G~a~avfq~c~i~~ 397 (541)
T PLN02416 384 GNAAVVFQACNIVS 397 (541)
T ss_pred ccceEEEeccEEEE
Confidence 77788888998853
No 38
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=94.52 E-value=0.43 Score=50.33 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=68.7
Q ss_pred CeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCceeee-------
Q 019799 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAI------- 230 (335)
Q Consensus 158 ~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~------- 230 (335)
.++..+.++|+.++||+|..-.+ ...|+|-+.+++||-|+-|.|+.+.| .+-++
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~ 322 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDG 322 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCcc
Confidence 35566789999999999973110 15789999999999999999998433 22222
Q ss_pred ----eCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeecCCCcCCCcccc
Q 019799 231 ----HGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR 285 (335)
Q Consensus 231 ----~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r 285 (335)
..+.+|+|++|+|..-.-+..+|+... -+...+++-.|.| .+ ..|-=|+.
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~---ggv~ni~ved~~~-~~-~d~GLRik 376 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG---GGVQNITVEDCVM-DN-TDRGLRIK 376 (542)
T ss_pred cccccccccEEEecceecccccceEeeeecC---CceeEEEEEeeee-cc-Ccceeeee
Confidence 234679999999985444555554321 1235678888888 33 44544443
No 39
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.49 E-value=0.48 Score=49.86 Aligned_cols=164 Identities=18% Similarity=0.272 Sum_probs=95.7
Q ss_pred hHhHhhhC-----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e------CCC------eEEEeeeccE
Q 019799 110 TLRYAVIQ-----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNI 168 (335)
Q Consensus 110 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~l~i~~~~NV 168 (335)
|+.+||.. ...+++||=+.|+ ..+.+.| ++|+||.|.|..-+| . +|. .+. ..++++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~-v~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGT--YHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVA-AMGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCe--eEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEE-EEcCCe
Confidence 67788852 2246777777775 4577777 589999999876443 2 121 122 368999
Q ss_pred EEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeee
Q 019799 169 IIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAI 230 (335)
Q Consensus 169 IIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~ 230 (335)
+.+||.|++.. |+ ..+-|+-+. .+....+.+|.|.... .|.+|.+
T Consensus 316 ~a~nitf~Nta--g~---------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFI 378 (529)
T PLN02170 316 IARDITFVNSA--GP---------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFI 378 (529)
T ss_pred EEEeeEEEecC--CC---------------CCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEcccccee
Confidence 99999999742 11 122344443 2577888888887643 4566777
Q ss_pred eCCceEEEEcceecccc----eeccc--CCCCCccCCCcceEEEEeeeecCCCc----CCCccccCceEEEEcceeeC
Q 019799 231 HGSTAITISNNYMTHHN----KVMLL--GHSDTFTQDKNMQVTIAFNHFGEGLV----QRMPRCRHGYFHVVNNDYTH 298 (335)
Q Consensus 231 ~~s~~VTISnn~f~~H~----k~~L~--G~sd~~~~d~~~~vT~~~N~f~~~~~----~R~Pr~r~G~~HvvNN~y~~ 298 (335)
.|.-..-+++|.+.--. .+.+- |..+ .+...-..|+++-+. ... +| |.-.+..+-+.|.++..
T Consensus 379 FG~a~avFq~C~I~~~~~~~~~g~ITAq~R~~---~~~~~Gfvf~~C~it-~~~~~yLGR-PW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 379 FGNSAVVFQSCNIAARKPSGDRNYVTAQGRSD---PNQNTGISIHNCRIT-AESMTYLGR-PWKEYSRTVVMQSFIDG 451 (529)
T ss_pred cccceEEEeccEEEEecCCCCceEEEecCCCC---CCCCceEEEEeeEEe-cCCceeeeC-CCCCCceEEEEecccCC
Confidence 77777788888875311 11111 2111 111234567777663 211 22 22224566667777653
No 40
>PLN02773 pectinesterase
Probab=94.48 E-value=4.6 Score=40.00 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=91.8
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee-C---------------C------Ce
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA-G---------------G------PC 159 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~-~---------------G------~~ 159 (335)
|+.+||.. ...+++||=..|+ ..+.|.| ++|+||.|++..-+ |. + | +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 2235566656674 4477777 56899999876533 22 0 1 12
Q ss_pred EEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC---------------
Q 019799 160 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN--------------- 223 (335)
Q Consensus 160 l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~--------------- 223 (335)
+.+ .++|++.+||+|++..+. ..+-|+.+. .+..+-+.+|.|-...
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c 158 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDC 158 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEee
Confidence 223 689999999999974321 112333333 2467777777766433
Q ss_pred --CCceeeeeCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeecCCCc-------CCCccccCceEEEEcc
Q 019799 224 --DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV-------QRMPRCRHGYFHVVNN 294 (335)
Q Consensus 224 --Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~-------~R~Pr~r~G~~HvvNN 294 (335)
.|.+|.+.|.-..-+.+|.|.--..+.+.=.+-... ....-..|.++-+. ... +| |.-.++.+-+.|.
T Consensus 159 ~IeG~VDFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~~-~~~~GfvF~~c~it-~~~~~~~~yLGR-pW~~~a~vVf~~t 235 (317)
T PLN02773 159 YIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSS-QESTGYVFLRCVIT-GNGGSGYMYLGR-PWGPFGRVVFAYT 235 (317)
T ss_pred EEeecccEEeeccEEEEEeeEEEEccCcEEECCCCCCC-CCCceEEEEccEEe-cCCCCcceeecC-CCCCCceEEEEec
Confidence 556677777777778888885322222221111000 11223466666663 221 12 3333566777777
Q ss_pred eeeC
Q 019799 295 DYTH 298 (335)
Q Consensus 295 ~y~~ 298 (335)
++..
T Consensus 236 ~l~~ 239 (317)
T PLN02773 236 YMDA 239 (317)
T ss_pred ccCC
Confidence 7664
No 41
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=94.37 E-value=0.58 Score=49.40 Aligned_cols=118 Identities=22% Similarity=0.358 Sum_probs=77.4
Q ss_pred Cch---hHhHhhhC------CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-EeC------CC------eEE
Q 019799 107 KPG---TLRYAVIQ------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------GP------CIT 161 (335)
Q Consensus 107 ~pG---tLr~av~~------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~------~l~ 161 (335)
+.| |..+||.. ...+++|+=+.|+ .++.+.| ++|+|+.|.|..-+ |.+ |. .+.
T Consensus 231 GsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~ 308 (539)
T PLN02995 231 GSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGI--YQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAG 308 (539)
T ss_pred CCCCccCHHHHHHhcccccCCCceEEEEEeCCE--eEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEE
Confidence 455 67788853 1235666666674 4466777 57999999987643 331 11 112
Q ss_pred EeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCC----------------
Q 019799 162 VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND---------------- 224 (335)
Q Consensus 162 i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~D---------------- 224 (335)
..+++++.+||.|++.. |+ ..+-|+-+. .+....+.+|.|....|
T Consensus 309 -v~~~~F~a~nitf~Nta--g~---------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I 370 (539)
T PLN02995 309 -IEGLHFIAKGITFRNTA--GP---------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYI 370 (539)
T ss_pred -EECCCeEEEeeEEEeCC--CC---------------CCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEE
Confidence 36899999999999742 11 134455555 36888899998876544
Q ss_pred -CceeeeeCCceEEEEcceec
Q 019799 225 -GLIDAIHGSTAITISNNYMT 244 (335)
Q Consensus 225 -glidv~~~s~~VTISnn~f~ 244 (335)
|.+|.+.|.-..-+++|.+.
T Consensus 371 ~GtVDFIFG~a~avf~~C~i~ 391 (539)
T PLN02995 371 YGTVDFIFGNAAAVFQNCIIL 391 (539)
T ss_pred eeccceEecccceEEeccEEE
Confidence 55666667777778888875
No 42
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.11 E-value=0.73 Score=48.43 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=74.5
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee------CCC------eEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------~l~i~~~~NVI 169 (335)
|+.+||.+ ...+++||=+.|+ .++.+.| ++|+||.|.|..-+ |. +|. -+. ..+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~-v~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGV--YLENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFA-VSGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCce--eEEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEE-EECCCeE
Confidence 67777743 2335666666674 4467777 57899999987643 32 221 112 3689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.+||.|++.. |+ ..+-|+-+. .+...-+.+|.|.... .|.+|.+.
T Consensus 297 a~nitf~Nta--g~---------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 359 (520)
T PLN02201 297 ARDITFQNTA--GP---------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIF 359 (520)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEe
Confidence 9999999742 11 123344444 2577788888887643 45677777
Q ss_pred CCceEEEEcceecc
Q 019799 232 GSTAITISNNYMTH 245 (335)
Q Consensus 232 ~s~~VTISnn~f~~ 245 (335)
|.-..-+++|.+.-
T Consensus 360 G~a~avf~~C~i~~ 373 (520)
T PLN02201 360 GDATAVFQNCQILA 373 (520)
T ss_pred cCceEEEEccEEEE
Confidence 77778888888853
No 43
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.09 E-value=0.78 Score=48.03 Aligned_cols=116 Identities=19% Similarity=0.316 Sum_probs=77.1
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-EeC------CC------eEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------GP------CITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~------~l~i~~~~NVI 169 (335)
|+.+||.+ ...+++||=+.|+ .++.+.| ++|+||.|.|..-+ |.+ |. .+. ..++++|
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~-v~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVA-SNGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEE-EEcCCeE
Confidence 57778743 2336666666674 4477777 57999999997644 321 21 111 2678999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.+||.|++.. |+ ..+-|+-+. .+...-+-+|+|.... .|.+|.+.
T Consensus 288 A~nitf~Nta--g~---------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIF 350 (509)
T PLN02488 288 GIDMCFRNTA--GP---------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFIC 350 (509)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEe
Confidence 9999999732 21 134466665 3688888888887643 45567777
Q ss_pred CCceEEEEcceecc
Q 019799 232 GSTAITISNNYMTH 245 (335)
Q Consensus 232 ~s~~VTISnn~f~~ 245 (335)
|.-.+-+++|.+.-
T Consensus 351 G~a~avFq~C~I~s 364 (509)
T PLN02488 351 GNAAAVFQFCQIVA 364 (509)
T ss_pred cceEEEEEccEEEE
Confidence 77788899998863
No 44
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=94.06 E-value=0.91 Score=47.92 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=99.3
Q ss_pred hHhHhhhC---CC----CeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee------CC------CeEEEeeec
Q 019799 110 TLRYAVIQ---DE----PLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVT 166 (335)
Q Consensus 110 tLr~av~~---~~----P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G------~~l~i~~~~ 166 (335)
|+.+||.. .. -++|||=+.|+- .+.|.| ++|+||.|.|..-+ |. +| +-+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67778743 11 267777777754 467777 57999999987644 32 22 12223 679
Q ss_pred cEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCcee
Q 019799 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLID 228 (335)
Q Consensus 167 NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglid 228 (335)
++|.+||.|++.. |+ ...-|+-+. .+...-+.+|+|-... .|.+|
T Consensus 314 ~F~a~~it~~Nta--g~---------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTA--GP---------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECC--CC---------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 9999999999742 21 133455555 3677888889887643 45677
Q ss_pred eeeCCceEEEEcceeccc-----ceecccCCCCCccCCCcceEEEEeeeecCCCc-------------CCCccccCceEE
Q 019799 229 AIHGSTAITISNNYMTHH-----NKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV-------------QRMPRCRHGYFH 290 (335)
Q Consensus 229 v~~~s~~VTISnn~f~~H-----~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~-------------~R~Pr~r~G~~H 290 (335)
.+.|.-.+-+++|.+.-- .+.++--.+-.. .+...-+.|+++-+. ... +| |.-.+..+-
T Consensus 377 FIFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~-~~~~~~~~~~~~~~yLGR-pW~~ysr~v 453 (538)
T PLN03043 377 FIFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTD-PNQNTGISIINCTIE-AAPDLAMDPNSTMNFLGR-PWKPYSRTV 453 (538)
T ss_pred eEeecceeeeeccEEEEecCCCCCCceEEecCCCC-CCCCceEEEEecEEe-cCCcccccccccceeccC-CCCCCceEE
Confidence 777888888999988531 112222111111 111234677787763 211 22 322356677
Q ss_pred EEcceeeC
Q 019799 291 VVNNDYTH 298 (335)
Q Consensus 291 vvNN~y~~ 298 (335)
+.+.++.+
T Consensus 454 ~~~s~i~~ 461 (538)
T PLN03043 454 YMQSYIGD 461 (538)
T ss_pred EEecccCC
Confidence 77777764
No 45
>PLN02634 probable pectinesterase
Probab=93.90 E-value=1.3 Score=44.66 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=73.1
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEEe-----------CC--------CeEEEe
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-----------GG--------PCITVQ 163 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-----------~G--------~~l~i~ 163 (335)
|+.+||.. +..+++|+=..|+ ..+.|.| ++|+||.|.|...+|. +| +.+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 45666642 2235555555664 5577777 6899999998775432 11 11223
Q ss_pred eeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCC-----------------C
Q 019799 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------G 225 (335)
Q Consensus 164 ~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~D-----------------g 225 (335)
.+++++.+||.|++..+... .| ..++-|+.+. .+.+.-+.+|.|....| |
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~gR~yf~~CyIeG 214 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------PG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFKECYIEG 214 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------CC---CCCCceEEEEecCCcEEEEEeEEecccceeeeCCCCEEEEeeEEcc
Confidence 68999999999997543100 01 1233444444 25778888888876544 4
Q ss_pred ceeeeeCCceEEEEcceec
Q 019799 226 LIDAIHGSTAITISNNYMT 244 (335)
Q Consensus 226 lidv~~~s~~VTISnn~f~ 244 (335)
.+|.+.|.-..-+.+|.+.
T Consensus 215 ~VDFIFG~g~a~Fe~C~I~ 233 (359)
T PLN02634 215 SIDFIFGNGRSMYKDCELH 233 (359)
T ss_pred cccEEcCCceEEEeccEEE
Confidence 5566666666667777775
No 46
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.78 E-value=0.92 Score=48.04 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=77.4
Q ss_pred hHhHhhhC-----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee-------CC------CeEEEeeecc
Q 019799 110 TLRYAVIQ-----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA-------GG------PCITVQYVTN 167 (335)
Q Consensus 110 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~-------~G------~~l~i~~~~N 167 (335)
|+.+||.. .+.++|||=+.|+ .++.+.| +.|+||.|.|..-+ |. +| +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~Gv--Y~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGV--YEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCce--EEeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 67777743 1346677767775 4466666 67999999987644 32 12 11223 6899
Q ss_pred EEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceee
Q 019799 168 IIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDA 229 (335)
Q Consensus 168 VIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv 229 (335)
++.+||.|++.. |+ ..+-|+-+. .+..+-+.+|.|.... .|.+|.
T Consensus 332 f~a~~it~~Nta--g~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTA--GP---------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCC--CC---------------CCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 999999999632 21 123455555 3688888889887643 566777
Q ss_pred eeCCceEEEEcceec
Q 019799 230 IHGSTAITISNNYMT 244 (335)
Q Consensus 230 ~~~s~~VTISnn~f~ 244 (335)
+.|.-.+-+++|.+.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 788888889999886
No 47
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.77 E-value=0.96 Score=47.74 Aligned_cols=167 Identities=18% Similarity=0.219 Sum_probs=95.8
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e------CCCe-E----EEeeeccEEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGPC-I----TVQYVTNIII 170 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~~-l----~i~~~~NVII 170 (335)
|+.+||.. ...++|||=+.|+ ..+.+.| ++|+||.|.|..-++ . +|.. + ....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~Gv--Y~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGV--YKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 57777743 3346777767774 4466766 589999999876433 2 1211 0 1236899999
Q ss_pred EceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeeeC
Q 019799 171 HGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIHG 232 (335)
Q Consensus 171 rnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~~ 232 (335)
+||.|++.. |+ .++-|+-+. .+.++-+.+|.|.... .|.+|.+.|
T Consensus 324 ~nit~~Nta--g~---------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG 386 (537)
T PLN02506 324 RDITFRNTA--GP---------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFG 386 (537)
T ss_pred EeeEEEeCC--CC---------------CCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEcc
Confidence 999999742 11 122344444 3688888888887643 456777777
Q ss_pred CceEEEEcceecccc-----eecccCCCCCccCCCcceEEEEeeeecCCCc----CCCccccCceEEEEcceeeC
Q 019799 233 STAITISNNYMTHHN-----KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV----QRMPRCRHGYFHVVNNDYTH 298 (335)
Q Consensus 233 s~~VTISnn~f~~H~-----k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~----~R~Pr~r~G~~HvvNN~y~~ 298 (335)
.-..-+++|.|.--. ++++--++-.. .+...-..|+++.+. ... +| |.-.+..+-+.|.++..
T Consensus 387 ~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~-~~~~~yLGR-PW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 387 NGAAVLQNCKIYTRVPLPLQKVTITAQGRKS-PHQSTGFSIQDSYVL-ATQPTYLGR-PWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred CceeEEeccEEEEccCCCCCCceEEccCCCC-CCCCcEEEEEcCEEc-cCCceEEec-CCCCCceEEEEecCCCC
Confidence 777888899886321 12222111000 111223566666652 211 11 33335566777777654
No 48
>PLN02304 probable pectinesterase
Probab=93.73 E-value=1.3 Score=44.78 Aligned_cols=120 Identities=21% Similarity=0.281 Sum_probs=74.9
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e--CC----------CeEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A--GG----------PCITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~--~G----------~~l~i~~~~NVI 169 (335)
|+.+||.. +..+++||=..|+ ..+.|.| ++|+||.|+|..-++ . +. +.+. ..+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~-v~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQ-VFASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEE-EECCCeE
Confidence 67778753 2335666666674 4577877 689999999876432 2 11 1122 3689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCC-----------------Cceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~D-----------------glidv~~ 231 (335)
.+||.|++..+.. .+ + ..++-|+-+. .+...-+.+|.|....| |.+|.+.
T Consensus 166 a~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VDFIF 233 (379)
T PLN02304 166 AKNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIF 233 (379)
T ss_pred EEeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEeeEEcccccEEe
Confidence 9999999754311 01 1 1233455554 36888888888876544 4455566
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-..-+.+|.|.
T Consensus 234 G~g~A~Fe~C~I~ 246 (379)
T PLN02304 234 GDARSLYENCRLI 246 (379)
T ss_pred ccceEEEEccEEE
Confidence 6666677777775
No 49
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.71 E-value=0.97 Score=47.83 Aligned_cols=119 Identities=19% Similarity=0.365 Sum_probs=78.3
Q ss_pred Cch---hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e------CCCe-E---E-Eee
Q 019799 107 KPG---TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGPC-I---T-VQY 164 (335)
Q Consensus 107 ~pG---tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~~-l---~-i~~ 164 (335)
+.| |+.+||.. ...|+|||=+.|+ .++.+.| ++|+||.|.|...+| . +|.. + + ...
T Consensus 244 GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~ 321 (548)
T PLN02301 244 GSGKYKTVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAV 321 (548)
T ss_pred CCCCcccHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEE
Confidence 555 67778753 3346777777775 4577777 579999999876443 2 2221 0 1 236
Q ss_pred eccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCc
Q 019799 165 VTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGL 226 (335)
Q Consensus 165 ~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dgl 226 (335)
+++++.+||.|++.. |+ ...-|+-+. .+...-+.+|.|.... .|.
T Consensus 322 ~~~F~a~nitf~Nta--g~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~Gt 384 (548)
T PLN02301 322 GDGFIAQDIWFQNTA--GP---------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGT 384 (548)
T ss_pred CCceEEEeeEEEECC--CC---------------CCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEec
Confidence 799999999999742 21 122344444 3578888888887643 456
Q ss_pred eeeeeCCceEEEEcceec
Q 019799 227 IDAIHGSTAITISNNYMT 244 (335)
Q Consensus 227 idv~~~s~~VTISnn~f~ 244 (335)
+|.+.|.-..-+++|.+.
T Consensus 385 VDFIFG~a~avfq~c~i~ 402 (548)
T PLN02301 385 VDFIFGNAAVVFQNCKIV 402 (548)
T ss_pred cceecccceeEEeccEEE
Confidence 777777778888888885
No 50
>PLN02665 pectinesterase family protein
Probab=93.63 E-value=1.1 Score=45.10 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=72.7
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-EeC-----------CCeEEEeeeccEEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG-----------GPCITVQYVTNIII 170 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~-----------G~~l~i~~~~NVII 170 (335)
|+.+||.. +..++|||=+.|+ ..+.|.| ++|+|+.|.+...+ |.. -+.+. ..+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~-v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGE--YNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLI-VESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcE--EEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEE-EECCCeEE
Confidence 67778753 2346677767774 4477777 68999999976533 321 12223 37899999
Q ss_pred EceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCCCc-----------------eeeeeC
Q 019799 171 HGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIHG 232 (335)
Q Consensus 171 rnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~Dgl-----------------idv~~~ 232 (335)
+||.|++..|.+.+ . ..++-|+.+. .+...-+.+|.|....|=| +|.+.|
T Consensus 159 ~nitf~Nta~~~~~------~------~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 159 ANIIIKNSAPRPDG------K------RKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EeeEEEeCCCCcCC------C------CCCcceEEEEEcCCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceecc
Confidence 99999975431110 0 0122344443 2578888888888765555 444445
Q ss_pred CceEEEEcceec
Q 019799 233 STAITISNNYMT 244 (335)
Q Consensus 233 s~~VTISnn~f~ 244 (335)
.-..-+.+|.+.
T Consensus 227 ~g~a~fe~C~i~ 238 (366)
T PLN02665 227 SGKSLYLNTELH 238 (366)
T ss_pred ccceeeEccEEE
Confidence 545556666664
No 51
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=93.56 E-value=1 Score=48.04 Aligned_cols=115 Identities=18% Similarity=0.290 Sum_probs=75.5
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e------CCC------eEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~l~i~~~~NVI 169 (335)
|+.+||.. ...+++|+=..|+- ++.+.| ++|+||.|.|..-+| . +|. .+. ..+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFV-ALGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEE-EEcCCEE
Confidence 67778753 23466666666744 466777 469999999976443 2 121 112 3689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.+||.|++.. |+ ..+-|+-+. .+...-+.+|.|.... .|.+|.+.
T Consensus 376 a~nitf~Nta--g~---------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 438 (596)
T PLN02745 376 AKSMGFRNTA--GP---------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIF 438 (596)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEe
Confidence 9999999742 11 123344444 3678888888887644 45577777
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-..-+++|.+.
T Consensus 439 G~a~avf~~C~i~ 451 (596)
T PLN02745 439 GDAAAIFQNCLIF 451 (596)
T ss_pred cceeEEEEecEEE
Confidence 7777888888885
No 52
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=93.49 E-value=1 Score=48.11 Aligned_cols=116 Identities=21% Similarity=0.339 Sum_probs=75.6
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCc-eEEe---cCCcEEEecCCceE-EeCCCe----E------E-EeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKE-ELIM---NSFKTIDGRGASVH-IAGGPC----I------T-VQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~-~L~v---~snkTI~G~ga~~~-I~~G~~----l------~-i~~~~NVI 169 (335)
|+.+||.. ...++||+=+.|+-+ + .|.| ++|+||.|.|..-+ |.++.. . + ...+++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~ 363 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFI 363 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEE
Confidence 67778753 334677776777543 5 3776 57999999987644 332111 1 1 13689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.|||.|++.. |+ ..+-|+-+. .+...-+.+|.|.... .|.+|.+.
T Consensus 364 a~~itf~Nta--g~---------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 426 (587)
T PLN02484 364 ARDMTFENWA--GP---------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIF 426 (587)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceec
Confidence 9999999742 11 123345544 3577788888886543 45577777
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-..-+++|.+.
T Consensus 427 G~a~avfq~C~i~ 439 (587)
T PLN02484 427 GNAAVVLQNCSIY 439 (587)
T ss_pred ccceeEEeccEEE
Confidence 7778888999885
No 53
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.43 E-value=1 Score=48.73 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=76.5
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEEe-------CCC------eEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-------GGP------CITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-------~G~------~l~i~~~~NVI 169 (335)
|+.+||.. ...++||+=+.|+ ..+.+.| +.|+|+.|.|..-+|. +|. -+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778753 3346666666674 4567777 4688999998765432 221 1223 689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.|||.|++-. |+ .++-|+-+. .+...-+.+|.|.... .|.+|.+.
T Consensus 341 a~nitf~Nta--g~---------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTA--GA---------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCC--CC---------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 9999999742 11 233455555 3688888888887543 45577777
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-..-+++|.+.
T Consensus 404 G~a~avfq~C~I~ 416 (670)
T PLN02217 404 GDAAAVFQNCTLL 416 (670)
T ss_pred cCceEEEEccEEE
Confidence 7778888999885
No 54
>PLN02916 pectinesterase family protein
Probab=93.39 E-value=1.2 Score=46.70 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=74.3
Q ss_pred hHhHhhhC-------CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee------CCC------eEEEeeec
Q 019799 110 TLRYAVIQ-------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITVQYVT 166 (335)
Q Consensus 110 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------~l~i~~~~ 166 (335)
|+.+||.. ...+++|+=+.|+ .++.+.| ++|+||.|.|..-+ |. +|. -+. ..++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~-v~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGV--YNEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFG-VSGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEE-EECC
Confidence 67777742 2346777767774 4467777 57999999987644 32 221 112 3689
Q ss_pred cEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCcee
Q 019799 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLID 228 (335)
Q Consensus 167 NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglid 228 (335)
+++.|||.|++.. |+ ...-|+-+. .+...-+.+|.|.... .|.+|
T Consensus 278 ~F~A~nitf~Nta--g~---------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVD 340 (502)
T PLN02916 278 GFWARDITFENTA--GP---------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTID 340 (502)
T ss_pred CEEEEeeEEEeCC--CC---------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccc
Confidence 9999999999742 11 122344443 3577778888876543 55677
Q ss_pred eeeCCceEEEEcceec
Q 019799 229 AIHGSTAITISNNYMT 244 (335)
Q Consensus 229 v~~~s~~VTISnn~f~ 244 (335)
.+.|.-.+-+++|.+.
T Consensus 341 FIFG~a~avFq~C~I~ 356 (502)
T PLN02916 341 FIFGDAAVVFQNCDIF 356 (502)
T ss_pred eeccCceEEEecCEEE
Confidence 7777777888888875
No 55
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=93.38 E-value=0.057 Score=40.33 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=16.0
Q ss_pred CCCCChhhHHHHHhhhhh
Q 019799 22 SPVQDPELVVEEVHKSIN 39 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (335)
..+|||++|+++||+.|+
T Consensus 23 aY~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 23 AYVPDPENVTNEFNRHVH 40 (56)
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 458999999999999885
No 56
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.20 E-value=1.4 Score=46.93 Aligned_cols=115 Identities=17% Similarity=0.296 Sum_probs=76.4
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee------CC-C------eEEEeeeccE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG-P------CITVQYVTNI 168 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G-~------~l~i~~~~NV 168 (335)
|+.+||.. ...+++|+=+.|+ .++.+.| ++|+||.|.|..-+ |. +| . .+. ..++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~Gv--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~-v~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGV--YNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVA-INGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCce--eEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEE-EEcCCE
Confidence 67778853 2336666666674 4467777 57999999987643 32 12 1 112 368999
Q ss_pred EEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeee
Q 019799 169 IIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAI 230 (335)
Q Consensus 169 IIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~ 230 (335)
+.|||.|++.. |+ .++-|+-+. .+...-+.+|.|.... .|.+|.+
T Consensus 350 ~a~nitf~Nta--g~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 412 (572)
T PLN02990 350 TAKNIGFENTA--GP---------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFI 412 (572)
T ss_pred EEEeeEEEeCC--CC---------------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceE
Confidence 99999999742 11 133455555 3678888888887543 5567777
Q ss_pred eCCceEEEEcceec
Q 019799 231 HGSTAITISNNYMT 244 (335)
Q Consensus 231 ~~s~~VTISnn~f~ 244 (335)
.|.-..-+++|.+.
T Consensus 413 FG~a~avf~~C~i~ 426 (572)
T PLN02990 413 FGDAKVVLQNCNIV 426 (572)
T ss_pred ccCceEEEEccEEE
Confidence 77777888999886
No 57
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.11 E-value=1.3 Score=46.76 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=73.2
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee------CC------CeEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G------~~l~i~~~~NVI 169 (335)
|+.+||.. ...+++|+=+.|+-+ +.+.| ++|+||.|.|..-+ |. +| +.+. ..+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG-VKGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE-EECCCEE
Confidence 56667743 223555555556444 66777 57899999986633 32 12 1122 3689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.+||.|++-. |+ ...-|+-+. .+...-+.+|.|.... -|.+|.+.
T Consensus 309 a~nitf~Nta--g~---------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIF 371 (530)
T PLN02933 309 AKDISFVNYA--GP---------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIF 371 (530)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceec
Confidence 9999999732 11 123455554 3678888888887644 45566777
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-..-+++|.+.
T Consensus 372 G~a~avFq~C~i~ 384 (530)
T PLN02933 372 GNAAVVFQNCSLY 384 (530)
T ss_pred cCceEEEeccEEE
Confidence 7777778888885
No 58
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.10 E-value=1.2 Score=47.44 Aligned_cols=115 Identities=18% Similarity=0.302 Sum_probs=77.0
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e------CCC------eEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~l~i~~~~NVI 169 (335)
|+.+||.. ...++|||=+.|+ ..+.+.| ++|+||.|.|..-+| . +|. -+. ..+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~-v~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA-AVGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE-EECCCeE
Confidence 67778753 2346677767774 4467777 479999999876443 2 221 112 3679999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.|||.|++.. |+ ...-|+-+. ++...-+-+|+|-... .|.+|.+.
T Consensus 366 a~~itf~Nta--g~---------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIF 428 (587)
T PLN02313 366 ARDITFQNTA--GP---------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIF 428 (587)
T ss_pred EEeeEEEeCC--CC---------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceec
Confidence 9999999742 21 123344444 3678888888887533 56678788
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-.+-+++|.+.
T Consensus 429 G~a~avfq~c~i~ 441 (587)
T PLN02313 429 GNAAAVLQDCDIN 441 (587)
T ss_pred cceeEEEEccEEE
Confidence 8888889999986
No 59
>PLN02314 pectinesterase
Probab=92.94 E-value=1.2 Score=47.59 Aligned_cols=115 Identities=20% Similarity=0.339 Sum_probs=76.9
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e------CCC------eEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~l~i~~~~NVI 169 (335)
|+.+||.. ...++||+=+.|+ ..+.+.| ++|+|+.|.|..-+| . +|. .+. ..+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~-v~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGT--YVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA-AAGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCce--EEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE-EEcCCeE
Confidence 67778753 3346777777775 4466766 579999999876433 2 121 112 3689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.|||.|++.. |+ ...-|+-+. ++...-+.+|.|-... .|.+|.+.
T Consensus 369 a~~itf~Nta--g~---------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 431 (586)
T PLN02314 369 AKDMGFINTA--GA---------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIF 431 (586)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceec
Confidence 9999999742 11 123455555 4678888888887643 45567777
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-.+-+++|.+.
T Consensus 432 G~a~avf~~c~i~ 444 (586)
T PLN02314 432 GNAAVVFQNCNIQ 444 (586)
T ss_pred cCceeeeeccEEE
Confidence 7788888999885
No 60
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=92.74 E-value=1.5 Score=46.50 Aligned_cols=115 Identities=21% Similarity=0.328 Sum_probs=74.6
Q ss_pred hHhHhhhC-------CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee------CCC------eEEEeeec
Q 019799 110 TLRYAVIQ-------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITVQYVT 166 (335)
Q Consensus 110 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------~l~i~~~~ 166 (335)
|..+||.. ...+++|+=+.|+- ++.+.| ++|+||.|.|..-+ |. +|. -+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 66677743 12256666666754 467777 67899999987643 32 231 2233 679
Q ss_pred cEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCcee
Q 019799 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLID 228 (335)
Q Consensus 167 NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglid 228 (335)
+++.+||.|++.. |+ ..+-|+-+. .+...-+.+|.|.... .|.+|
T Consensus 341 ~F~a~nitf~Nta--g~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVD 403 (566)
T PLN02713 341 NFVAVNITFRNTA--GP---------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVD 403 (566)
T ss_pred CeEEEeeEEEeCC--CC---------------CCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccc
Confidence 9999999999742 11 123345444 3577778888877644 45567
Q ss_pred eeeCCceEEEEcceec
Q 019799 229 AIHGSTAITISNNYMT 244 (335)
Q Consensus 229 v~~~s~~VTISnn~f~ 244 (335)
.+.|.-.+-+++|.+.
T Consensus 404 FIFG~a~avfq~C~i~ 419 (566)
T PLN02713 404 FIFGNAAVVFQNCNLY 419 (566)
T ss_pred eecccceEEEeccEEE
Confidence 7777778888999885
No 61
>PLN02497 probable pectinesterase
Probab=92.42 E-value=2.8 Score=41.70 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=73.8
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-Ee--CC------CeEEEeeeccEEEEce
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA--GG------PCITVQYVTNIIIHGI 173 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~--~G------~~l~i~~~~NVIIrnl 173 (335)
|+.+||.. ...+++|+=..| ..++.|.| ++++||.|+|...+ |. ++ +-+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G--~Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAG--LYREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCc--EEEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 56667642 234555555566 44577777 68999999987632 22 11 12333 6899999999
Q ss_pred EEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCCCc-----------------eeeeeCCce
Q 019799 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIHGSTA 235 (335)
Q Consensus 174 ~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~Dgl-----------------idv~~~s~~ 235 (335)
.|++..+... .+. ...++-|+.+. .+.++-+.+|.|....|=| +|.+.|.-.
T Consensus 123 T~~Nt~~~~~---------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~ 192 (331)
T PLN02497 123 TFANSYNFPS---------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQ 192 (331)
T ss_pred EEEeCCCCcc---------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeCCCcEEEEeCEEEecccEEccCce
Confidence 9997532000 000 00123455554 3688889999997765544 555556656
Q ss_pred EEEEcceec
Q 019799 236 ITISNNYMT 244 (335)
Q Consensus 236 VTISnn~f~ 244 (335)
.-+.+|.+.
T Consensus 193 a~Fe~C~I~ 201 (331)
T PLN02497 193 SIYESCVIQ 201 (331)
T ss_pred EEEEccEEE
Confidence 667777775
No 62
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=92.02 E-value=1.8 Score=46.05 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=76.2
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceEE-e------CCC------eEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~l~i~~~~NVI 169 (335)
|..+||.. +..++|||=+.|+ ..+.+.| ++|+||.|.|..-+| . +|. .+. ..+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~Gv--Y~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~-v~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGV--YFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA-VFGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCc--eEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee-EECCCeE
Confidence 66677743 2335666666674 4466777 568999999876433 2 121 112 3679999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCC-----------------CCceeeee
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~-----------------Dglidv~~ 231 (335)
.|||.|++.. |+ .+.-|+-+. .+...-+.+|.|-... .|.+|.+.
T Consensus 349 a~~itf~Nta--g~---------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 349 ARDMGFRNTA--GP---------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIF 411 (565)
T ss_pred EEEEEEEeCC--CC---------------CCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceee
Confidence 9999999732 21 123455554 4688888999887543 56677888
Q ss_pred CCceEEEEcceec
Q 019799 232 GSTAITISNNYMT 244 (335)
Q Consensus 232 ~s~~VTISnn~f~ 244 (335)
|.-.+-+++|.+.
T Consensus 412 G~a~avfq~c~i~ 424 (565)
T PLN02468 412 GNSAVVFQNCNIL 424 (565)
T ss_pred ccceEEEeccEEE
Confidence 8888899999985
No 63
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=91.78 E-value=0.54 Score=49.63 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCCeEEEEeeeeEEEeC------ce---EE-e-cCCcEEEecCCce-EEeCCCeEEEeeeccEEEEceEEEecccCCCcc
Q 019799 118 DEPLWIIFARDMVITLK------EE---LI-M-NSFKTIDGRGASV-HIAGGPCITVQYVTNIIIHGINIHDCKRGGNAN 185 (335)
Q Consensus 118 ~~P~~IvF~~~g~I~L~------~~---L~-v-~snkTI~G~ga~~-~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~ 185 (335)
..|+.+.|..--.+.+. .+ +. + -+|.||.+..-+. +..+--||.+..++||.|.+.+|.- +.+..
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt---gDD~I 312 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT---GDDCI 312 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec---CCceE
Confidence 47889988876555443 11 11 1 3455555543221 0001126788889999999999972 11111
Q ss_pred eecCCCCCCCCccCCCCcEEeeC-CceEEEeceeecCCCCCceeeee---CCceEEEEcceecccceecccCCCC
Q 019799 186 VRDSPSHYGWRTISDGDGVSIFG-GSHVWVDHCSLSNCNDGLIDAIH---GSTAITISNNYMTHHNKVMLLGHSD 256 (335)
Q Consensus 186 v~~~~~~~g~~~~~~gDaIsI~g-s~nVWIDHcs~s~~~Dglidv~~---~s~~VTISnn~f~~H~k~~L~G~sd 256 (335)
..-+ + ...|+-...+ +++|||=||.|+.++-+++...+ +-.+||+-+|.|.+-+.++-|...+
T Consensus 313 ~iks--g------~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~ 379 (542)
T COG5434 313 AIKS--G------AGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTND 379 (542)
T ss_pred Eeec--c------cCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeec
Confidence 1100 0 1111111222 57899999999998888877443 5689999999999977777665544
No 64
>PLN02671 pectinesterase
Probab=91.61 E-value=3.7 Score=41.34 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=70.7
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCC---ceEEe----------CC--------CeEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGA---SVHIA----------GG--------PCIT 161 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga---~~~I~----------~G--------~~l~ 161 (335)
|+.+||.. ...+++|+=..|+ ..+.|.| ++|+||.|.|. +..|. +| +.+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 56667742 2235555555663 4577777 68999999874 33343 12 1122
Q ss_pred EeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceEEEeceeecCCCCCc--------------
Q 019799 162 VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-------------- 226 (335)
Q Consensus 162 i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nVWIDHcs~s~~~Dgl-------------- 226 (335)
..+++++.+||.|++..+.++ + ..++-|+.+. .+.++-+.+|.|....|=|
T Consensus 151 -v~a~~F~a~nitfeNt~~~~~----------g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~gR~yf~~CyI 216 (359)
T PLN02671 151 -IESDYFCATGITFENTVVAEP----------G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETGSHYFYQCYI 216 (359)
T ss_pred -EECCceEEEeeEEEcCCCCCC----------C---CCCccEEEEEEcCccEEEEcceEeccccccEeCCCcEEEEecEE
Confidence 367999999999997532111 0 0123344443 3588999999998765555
Q ss_pred ---eeeeeCCceEEEEcceec
Q 019799 227 ---IDAIHGSTAITISNNYMT 244 (335)
Q Consensus 227 ---idv~~~s~~VTISnn~f~ 244 (335)
+|.+.|.-..-+.+|.+.
T Consensus 217 eG~VDFIFG~g~A~Fe~C~I~ 237 (359)
T PLN02671 217 QGSVDFIFGNAKSLYQDCVIQ 237 (359)
T ss_pred EEeccEEecceeEEEeccEEE
Confidence 444555555566666664
No 65
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=91.55 E-value=1.6 Score=43.80 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=70.1
Q ss_pred ceEEecCCcEEEecCCceEEeCCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEE
Q 019799 135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWV 214 (335)
Q Consensus 135 ~~L~v~snkTI~G~ga~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWI 214 (335)
..|.+..+.|-++.-.+--|....||.+.++..+.|..-+|.+.. .+| ....|++|++++++..-|
T Consensus 98 agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~-----~~r---------~~~rGnGI~vyNa~~a~V 163 (408)
T COG3420 98 AGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLA-----DLR---------VAERGNGIYVYNAPGALV 163 (408)
T ss_pred ceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeecc-----ccc---------hhhccCceEEEcCCCcEE
Confidence 344555555555543332244567889999999999999998432 222 235789999999999999
Q ss_pred eceeecCCCCCceeeeeCCceEEEEcceecc
Q 019799 215 DHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (335)
Q Consensus 215 DHcs~s~~~Dglidv~~~s~~VTISnn~f~~ 245 (335)
=-..+|...|+... ..|+.-+++.|.|.+
T Consensus 164 ~~ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 164 VGNDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred EcCccccccceEEE--cccccceecccchhh
Confidence 99999999999875 457777888888886
No 66
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=91.01 E-value=1.8 Score=42.27 Aligned_cols=195 Identities=14% Similarity=0.193 Sum_probs=91.8
Q ss_pred hHhHhhhC----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCceE-EeCC------------CeEEEeeeccEE
Q 019799 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAGG------------PCITVQYVTNII 169 (335)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~G------------~~l~i~~~~NVI 169 (335)
|+.+||.. ...+++||=..|+ .++.|.| ++++||.|.|+.-+ |... +.+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~--Y~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGT--YREKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEE--EE--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCee--EccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 57777753 3346667767774 4477888 37999999987643 3311 12233 689999
Q ss_pred EEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCce-----------------eeeeC
Q 019799 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLI-----------------DAIHG 232 (335)
Q Consensus 170 Irnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dgli-----------------dv~~~ 232 (335)
.+||.|++.. |+. ....-||.+. +.++.+.+|.|....|=|. |.+.|
T Consensus 91 ~~nit~~Nt~--g~~-------------~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~IeG~vDFIfG 154 (298)
T PF01095_consen 91 AENITFENTA--GPS-------------GGQAVALRVS-GDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIEGNVDFIFG 154 (298)
T ss_dssp EEEEEEEEHC--SGS-------------G----SEEET--TSEEEEEEEEE-STT-EEE-SSEEEEES-EEEESEEEEEE
T ss_pred eeeeEEecCC--CCc-------------ccceeeeeec-CCcEEEEEeEEccccceeeeccceeEEEeeEEEecCcEEEC
Confidence 9999999742 110 0123466664 4788999999987666554 33333
Q ss_pred CceEEEEcceecccc-----eecccCCCCCccCCCcceEEEEeeeecCCCcCCC------------ccccCceEEEEcce
Q 019799 233 STAITISNNYMTHHN-----KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRM------------PRCRHGYFHVVNND 295 (335)
Q Consensus 233 s~~VTISnn~f~~H~-----k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~------------Pr~r~G~~HvvNN~ 295 (335)
.-..-+.+|.|.--. ...+.-++-. ..+...-.-|.++.+- ....=. |.-.+..+-++|.+
T Consensus 155 ~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~-~~~~~~G~vF~~c~i~-~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~ 232 (298)
T PF01095_consen 155 NGTAVFENCTIHSRRPGGGQGGYITAQGRT-SPSQKSGFVFDNCTIT-GDSGVSPSYSDGSVYLGRPWGPYSRVVFINTY 232 (298)
T ss_dssp SSEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEE-ESTTTCGGCCCSTEEEE--SSEETEEEEES-E
T ss_pred CeeEEeeeeEEEEeccccccceeEEeCCcc-ccCCCeEEEEEEeEEe-cCccccccccceeEEecCcccceeeEEEEccc
Confidence 333344555443200 0111111100 0122345567777773 221111 21123567788888
Q ss_pred eeC------CcceeeecCCCCeEEEEccEEeCCCCC
Q 019799 296 YTH------WEMYALGGSASPTINSQGNRFVAPNDR 325 (335)
Q Consensus 296 y~~------~~~yaig~~~~~~i~~egN~F~~~~~~ 325 (335)
... |..+.-........+.|-+-.-++.++
T Consensus 233 m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~ 268 (298)
T PF01095_consen 233 MDDHINPEGWTPWSGDPNTDTVYFAEYNNTGPGANT 268 (298)
T ss_dssp E-TTEETCES--EEETTTTTCEEEEEES-BCTTC-S
T ss_pred cCCeeeccCcccccccccccceEEEEECCcCCCCCc
Confidence 775 433332333444557786666666554
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=89.91 E-value=7.3 Score=40.12 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=62.1
Q ss_pred hHhHhhhC-----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEecCCc---eEEeCC---------------------
Q 019799 110 TLRYAVIQ-----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGAS---VHIAGG--------------------- 157 (335)
Q Consensus 110 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~---~~I~~G--------------------- 157 (335)
|+.+||.. ...+++||=..|+ .++.|.| ++|+||.|.|.. ..|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~Gv--Y~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGT--YQGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCce--eEEEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 56677753 2236666666674 4467777 689999997632 344321
Q ss_pred -----------------CeE-------EEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEee-CCceE
Q 019799 158 -----------------PCI-------TVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHV 212 (335)
Q Consensus 158 -----------------~~l-------~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~-gs~nV 212 (335)
..+ ....+++++.+||.|++..+.+. + ..++-|+-+. .+..+
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v~ad~F~a~NLTf~Ntag~~~----------~---~~~~QAVALrv~GDra 240 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWSQNNGLQLQNLTIENTLGDSV----------D---AGNHPAVALRTDGDKV 240 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEEECCCEEEEeeEEEeCCCCCC----------C---CCcceeEEEEEcCCcE
Confidence 001 12367999999999997432100 0 1123344444 35788
Q ss_pred EEeceeecCCCCCcee
Q 019799 213 WVDHCSLSNCNDGLID 228 (335)
Q Consensus 213 WIDHcs~s~~~Dglid 228 (335)
-+.+|.|-...|=|+.
T Consensus 241 ~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 241 QIENVNILGRQDTFFV 256 (422)
T ss_pred EEEeeEEecccceeee
Confidence 8888888776666654
No 68
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=86.75 E-value=7.4 Score=38.59 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCcEEeeCCceEEEeceeecCCC-----CCceeeeeCCceEEEEcceecccceecccCCCCCc--cCCCcceEEEEeeee
Q 019799 201 GDGVSIFGGSHVWVDHCSLSNCN-----DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTF--TQDKNMQVTIAFNHF 273 (335)
Q Consensus 201 gDaIsI~gs~nVWIDHcs~s~~~-----Dglidv~~~s~~VTISnn~f~~H~k~~L~G~sd~~--~~d~~~~vT~~~N~f 273 (335)
+-++.|..+.||+|-..+|.... +-.|.+..++++|=|-+|-|..|....---|.|.. ......-|||.+|+|
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 45788888999999999998765 34566667889999999999886654111122322 112245799999999
Q ss_pred cCCCcCCCcccc--------Cce--EEEEcceeeCCcc----eeeecCCCCeEEEEccEEeCC
Q 019799 274 GEGLVQRMPRCR--------HGY--FHVVNNDYTHWEM----YALGGSASPTINSQGNRFVAP 322 (335)
Q Consensus 274 ~~~~~~R~Pr~r--------~G~--~HvvNN~y~~~~~----yaig~~~~~~i~~egN~F~~~ 322 (335)
+++-.+ -.|. .|+ +-+-+|||.|.-. +-+| .+-+-+|||+.-
T Consensus 196 hdh~Ks--sl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG-----~vHvyNNYy~~~ 251 (345)
T COG3866 196 HDHDKS--SLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG-----MVHVYNNYYEGN 251 (345)
T ss_pred ecCCee--eeeccCCcccccCCceeEEEeccccccccccCCceEee-----EEEEeccccccC
Confidence 754322 1221 233 4556899987432 2222 678889999843
No 69
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=84.75 E-value=2.5 Score=43.43 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=26.6
Q ss_pred eEEEEeeeecCCCcCC--Ccccc-CceEE-EEcceeeCCcce----------eeecC------CCCeEEEEccEEeCCC
Q 019799 265 QVTIAFNHFGEGLVQR--MPRCR-HGYFH-VVNNDYTHWEMY----------ALGGS------ASPTINSQGNRFVAPN 323 (335)
Q Consensus 265 ~vT~~~N~f~~~~~~R--~Pr~r-~G~~H-vvNN~y~~~~~y----------aig~~------~~~~i~~egN~F~~~~ 323 (335)
..|+..|+|- +...+ .+-+| .|.-| |+|||+++-..+ ++-.+ .-..+.+++|-|.+..
T Consensus 246 ~n~V~gN~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 246 RNTVEGNVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp S-EEES-EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred CceEeccEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 5688889884 44332 34445 35555 569999875322 21111 1125778888888765
No 70
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=81.48 E-value=31 Score=32.02 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=45.2
Q ss_pred CceEEEeceeecCC-CCCceee-----eeCCceEEEEcceecccceec---ccCCCCCccCCCcceEEEEeeeecCCCcC
Q 019799 209 GSHVWVDHCSLSNC-NDGLIDA-----IHGSTAITISNNYMTHHNKVM---LLGHSDTFTQDKNMQVTIAFNHFGEGLVQ 279 (335)
Q Consensus 209 s~nVWIDHcs~s~~-~Dglidv-----~~~s~~VTISnn~f~~H~k~~---L~G~sd~~~~d~~~~vT~~~N~f~~~~~~ 279 (335)
+++|+|.|..|..+ ....++. ..|-.+..|-||.|+.-..+. +.-..+..+...+...++.+|.+. ++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eeee
Confidence 57999999999986 3333432 245567899999998533221 111122222334677888999995 7877
Q ss_pred C
Q 019799 280 R 280 (335)
Q Consensus 280 R 280 (335)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 7
No 71
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=80.76 E-value=25 Score=31.00 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCcEEeeCCceEEEeceeecCCCCCceee
Q 019799 201 GDGVSIFGGSHVWVDHCSLSNCNDGLIDA 229 (335)
Q Consensus 201 gDaIsI~gs~nVWIDHcs~s~~~Dglidv 229 (335)
.++|.+..++++||++|++..+....+.+
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred ceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 57888889999999999999875555554
No 72
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=79.63 E-value=6.4 Score=37.00 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=34.4
Q ss_pred cCCCCcEEeeCCc-eEEEeceeecCCCCCceeeeeCCceEEEEcceecccce
Q 019799 198 ISDGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNK 248 (335)
Q Consensus 198 ~~~gDaIsI~gs~-nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~~H~k 248 (335)
....||+++.+.. .+.|.-.++..+.|..|-. .+...++|++-+..++-|
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEcCCCE
Confidence 3567888888776 8888888888888877764 455668888854445444
No 73
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=78.43 E-value=8.5 Score=35.58 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=10.0
Q ss_pred CeEEEEccEEeCCCCCCcccce
Q 019799 310 PTINSQGNRFVAPNDRFNKEVT 331 (335)
Q Consensus 310 ~~i~~egN~F~~~~~~~~k~vt 331 (335)
-++.+|+|-|-+-..-+.|.+|
T Consensus 131 HsFvLenNclYnN~aGny~n~~ 152 (198)
T PF08480_consen 131 HSFVLENNCLYNNAAGNYKNVT 152 (198)
T ss_pred ceEEEEccceeccCcCccccCC
Confidence 3455555555444333344433
No 74
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=55.19 E-value=3.6 Score=29.86 Aligned_cols=19 Identities=47% Similarity=1.006 Sum_probs=12.9
Q ss_pred ccceeecCccccccccccc
Q 019799 56 IDDCWRCDPKWEENRQQLA 74 (335)
Q Consensus 56 id~c~r~~~~w~~~r~~la 74 (335)
-|+|.||+-.|+..|-.-|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 5899999999998775544
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=48.37 E-value=32 Score=23.30 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=21.7
Q ss_pred cEEeeCCceEEEeceeecCCCCCceeeeeCCceEEEEcceec
Q 019799 203 GVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244 (335)
Q Consensus 203 aIsI~gs~nVWIDHcs~s~~~Dglidv~~~s~~VTISnn~f~ 244 (335)
||.+..+++..|..+.++...||. .+ ..+..-+|..|.|.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI-~~-~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGI-YL-TDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEE-EE-EeCCCCEeECCEEE
Confidence 355555555556666666666633 22 33455555555554
No 76
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=46.81 E-value=2.6e+02 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=21.8
Q ss_pred eEEEEeeeecCCCcCCCccccCceEEEEcceeeC
Q 019799 265 QVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH 298 (335)
Q Consensus 265 ~vT~~~N~f~~~~~~R~Pr~r~G~~HvvNN~y~~ 298 (335)
++|+.++.. .+. .|.|---.+.+.|.-+.+
T Consensus 195 NltliNC~I-~g~---QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTI-EGT---QPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEE-ecc---CccEeecceEEeCcEeec
Confidence 789999988 343 677755567777877764
No 77
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=45.39 E-value=2.4e+02 Score=28.79 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=53.0
Q ss_pred eEEEeeeccEEEEceEEEe---cccCCCcceecCCCCCCC--Cc---cCCCCcEEeeCCceEEEeceeecCCCCCceeee
Q 019799 159 CITVQYVTNIIIHGINIHD---CKRGGNANVRDSPSHYGW--RT---ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAI 230 (335)
Q Consensus 159 ~l~i~~~~NVIIrnl~i~~---~~p~g~~~v~~~~~~~g~--~~---~~~gDaIsI~gs~nVWIDHcs~s~~~Dglidv~ 230 (335)
-+++ .+-++||++|++|+ ..|.-+.-|--.+...+- |. ....=+|.++++.++||.-+++..-.|--+ .
T Consensus 71 ~vtv-~aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~--~ 147 (408)
T COG3420 71 YVTV-AAPDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRV--A 147 (408)
T ss_pred EEEE-eCCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccccch--h
Confidence 3555 68999999999994 222111000000000000 00 012234555566666665555544322221 1
Q ss_pred eCCceEEEEcceecccceecccCCCCCccCCCcceEEEEeeeecCCCcCCCccccCc
Q 019799 231 HGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHG 287 (335)
Q Consensus 231 ~~s~~VTISnn~f~~H~k~~L~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~G 287 (335)
+....|+|-| -..+...|..-++..|...--|=+||-| +++ |+--+|||
T Consensus 148 ~rGnGI~vyN-----a~~a~V~~ndisy~rDgIy~~~S~~~~~-~gn--r~~~~Ryg 196 (408)
T COG3420 148 ERGNGIYVYN-----APGALVVGNDISYGRDGIYSDTSQHNVF-KGN--RFRDLRYG 196 (408)
T ss_pred hccCceEEEc-----CCCcEEEcCccccccceEEEccccccee-ccc--chhheeee
Confidence 2223333322 1223334444445555555555666777 333 45556665
No 78
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=43.98 E-value=40 Score=33.59 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=38.7
Q ss_pred eeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecCCCCCcee
Q 019799 163 QYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLID 228 (335)
Q Consensus 163 ~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~~~Dglid 228 (335)
.+.+..||||++-+++-|..+. .-| -|.-.+.|+|..|..||..++-++.--||.
T Consensus 265 engkhfvirnvkaknitpdfsk-------kag----idnatvaiygcdnfvidni~mvnsagmlig 319 (464)
T PRK10123 265 ENGKHFVIRNIKAKNITPDFSK-------KAG----IDNATVAIYGCDNFVIDNIEMINSAGMLIG 319 (464)
T ss_pred cCCcEEEEEeeeccccCCCchh-------hcC----CCcceEEEEcccceEEeccccccccccEEE
Confidence 4567788888888877663211 112 355568899999999999999887655543
No 79
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=39.83 E-value=70 Score=31.22 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=10.7
Q ss_pred EEeeeccEEEEceEEE
Q 019799 161 TVQYVTNIIIHGINIH 176 (335)
Q Consensus 161 ~i~~~~NVIIrnl~i~ 176 (335)
.+|+++||.|||-++.
T Consensus 151 ~Fq~~kNvei~ns~l~ 166 (277)
T PF12541_consen 151 SFQYCKNVEIHNSKLD 166 (277)
T ss_pred EeeceeeEEEEccEEe
Confidence 4566777777776664
No 80
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=36.73 E-value=1.2e+02 Score=29.08 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=51.8
Q ss_pred ecCCcEEEecC--CceEEeCCCeEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCC------c
Q 019799 139 MNSFKTIDGRG--ASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGG------S 210 (335)
Q Consensus 139 v~snkTI~G~g--a~~~I~~G~~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs------~ 210 (335)
..++.+|.|.+ .+. ...|.++.|..+ +..|+|-+|+++. .++|.+.+. .
T Consensus 95 ~~~~~~i~GvtItN~n-~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~ 151 (246)
T PF07602_consen 95 LANNATISGVTITNPN-IARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGIN 151 (246)
T ss_pred ecCCCEEEEEEEEcCC-CCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCccc
Confidence 36777777753 221 123668899655 9999999998642 344544432 3
Q ss_pred eEEEeceeecCCCCCceee-eeCCceEEEEcceecccceecc
Q 019799 211 HVWVDHCSLSNCNDGLIDA-IHGSTAITISNNYMTHHNKVML 251 (335)
Q Consensus 211 nVWIDHcs~s~~~Dglidv-~~~s~~VTISnn~f~~H~k~~L 251 (335)
++.|.-.++....-|..-. ....-.-+|.||+|.+...++.
T Consensus 152 ~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 152 GNVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred ceEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeE
Confidence 4445555555554443211 1112224789999998665543
No 81
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=36.68 E-value=21 Score=26.90 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=20.8
Q ss_pred HHHHHHhhcccccCCCCCCChhhHHHH
Q 019799 7 LWLLLCLLAPTFISSSPVQDPELVVEE 33 (335)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (335)
+++++....|.+.++-+.|||.+|+-.
T Consensus 7 illilafa~pvfassmq~p~pasvttt 33 (65)
T PF10880_consen 7 ILLILAFASPVFASSMQMPDPASVTTT 33 (65)
T ss_pred HHHHHHHhhhHhhhcccCCCCcceeHH
Confidence 344466678888888899999998754
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=27.59 E-value=1.3e+02 Score=20.15 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=29.3
Q ss_pred eEEEeeeccEEEEceEEEecccCCCcceecCCCCCCCCccCCCCcEEeeCCceEEEeceeecC
Q 019799 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN 221 (335)
Q Consensus 159 ~l~i~~~~NVIIrnl~i~~~~p~g~~~v~~~~~~~g~~~~~~gDaIsI~gs~nVWIDHcs~s~ 221 (335)
||.+..+++..|++=+|.+ ..|||.+..+++--|..+.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEc
Confidence 3566667777677767763 3569999998887777777764
Done!