Query 019800
Match_columns 335
No_of_seqs 120 out of 132
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06217 GAGA_bind: GAGA bindi 100.0 4E-120 9E-125 859.0 11.5 300 1-335 1-301 (301)
2 PF06217 GAGA_bind: GAGA bindi 99.9 1.7E-22 3.7E-27 193.1 4.0 209 16-247 19-247 (301)
3 COG4372 Uncharacterized protei 96.6 0.01 2.3E-07 60.5 9.2 54 37-90 203-256 (499)
4 PF04094 DUF390: Protein of un 95.0 0.073 1.6E-06 57.7 7.8 42 42-83 535-576 (828)
5 COG4372 Uncharacterized protei 95.0 0.11 2.4E-06 53.3 8.5 56 35-90 208-263 (499)
6 PF04094 DUF390: Protein of un 94.1 0.2 4.3E-06 54.5 8.5 30 60-89 546-575 (828)
7 TIGR03319 YmdA_YtgF conserved 85.0 5.9 0.00013 41.4 9.6 23 286-308 422-444 (514)
8 PRK12704 phosphodiesterase; Pr 84.6 6.4 0.00014 41.1 9.6 21 288-308 430-450 (520)
9 PRK12704 phosphodiesterase; Pr 83.4 7.8 0.00017 40.5 9.7 38 46-83 91-128 (520)
10 TIGR03319 YmdA_YtgF conserved 81.2 11 0.00023 39.5 9.7 39 45-83 84-122 (514)
11 PRK00106 hypothetical protein; 77.3 11 0.00025 39.8 8.5 23 286-308 443-465 (535)
12 PRK00106 hypothetical protein; 74.2 22 0.00047 37.8 9.6 45 42-86 102-146 (535)
13 PF12072 DUF3552: Domain of un 68.9 52 0.0011 30.0 9.8 44 40-83 88-131 (201)
14 cd00374 RNase_T2 Ribonuclease 60.6 9.3 0.0002 33.5 3.2 30 299-328 60-92 (195)
15 PF10186 Atg14: UV radiation r 58.8 1.1E+02 0.0023 28.1 9.9 34 35-68 75-108 (302)
16 PF13300 DUF4078: Domain of un 57.2 50 0.0011 27.4 6.7 16 59-74 69-84 (88)
17 PF06212 GRIM-19: GRIM-19 prot 52.2 71 0.0015 28.1 7.2 39 44-82 59-97 (130)
18 PRK12705 hypothetical protein; 51.8 96 0.0021 32.9 9.4 25 286-310 416-440 (508)
19 PF13300 DUF4078: Domain of un 49.9 54 0.0012 27.2 5.8 42 42-83 45-86 (88)
20 PF10186 Atg14: UV radiation r 49.2 1.8E+02 0.0039 26.6 9.7 22 293-314 251-280 (302)
21 PRK10947 global DNA-binding tr 45.3 1.1E+02 0.0024 27.1 7.4 42 42-83 19-60 (135)
22 COG3551 Uncharacterized protei 43.3 70 0.0015 32.8 6.5 47 40-89 335-382 (402)
23 KOG1642 Ribonuclease, T2 famil 43.1 21 0.00047 35.0 2.9 65 242-328 41-128 (263)
24 PF08606 Prp19: Prp19/Pso4-lik 34.9 39 0.00084 27.3 2.7 21 60-80 42-62 (70)
25 PRK10328 DNA binding protein, 34.6 2.1E+02 0.0045 25.4 7.4 42 42-83 19-60 (134)
26 cd03401 Band_7_prohibitin Band 34.5 1.2E+02 0.0025 26.5 5.9 17 35-51 154-170 (196)
27 cd06434 GT2_HAS Hyaluronan syn 29.7 16 0.00035 31.4 -0.2 16 251-266 220-235 (235)
28 PF00445 Ribonuclease_T2: Ribo 28.8 33 0.00072 30.2 1.6 28 301-328 65-95 (189)
29 PRK00247 putative inner membra 28.7 3.3E+02 0.0072 28.5 8.8 43 49-91 340-383 (429)
30 PF14362 DUF4407: Domain of un 28.2 1.9E+02 0.0041 27.5 6.6 14 78-91 241-254 (301)
31 PF07795 DUF1635: Protein of u 28.2 2E+02 0.0044 27.6 6.7 51 35-88 10-60 (214)
32 KOG4819 Uncharacterized conser 27.5 3.1E+02 0.0067 23.8 7.0 28 55-82 52-79 (106)
33 PF08606 Prp19: Prp19/Pso4-lik 27.5 3.4E+02 0.0073 22.1 7.9 25 66-90 41-65 (70)
34 PF14359 DUF4406: Domain of un 26.9 40 0.00086 27.6 1.6 23 297-319 16-38 (92)
35 PF14799 FAM195: FAM195 family 25.4 29 0.00062 29.2 0.5 12 315-326 81-92 (99)
36 PRK10947 global DNA-binding tr 25.2 2.8E+02 0.006 24.6 6.6 45 47-91 17-61 (135)
37 TIGR03495 phage_LysB phage lys 23.5 5.3E+02 0.012 23.0 9.3 60 36-96 25-91 (135)
38 PRK14474 F0F1 ATP synthase sub 23.1 6.6E+02 0.014 23.9 9.8 14 35-48 30-43 (250)
39 COG0701 Predicted permeases [G 22.6 24 0.00052 35.1 -0.5 14 240-253 68-81 (317)
40 KOG4819 Uncharacterized conser 22.5 5E+02 0.011 22.6 7.3 9 54-62 58-66 (106)
41 PF13863 DUF4200: Domain of un 22.4 4.4E+02 0.0095 21.6 7.0 33 43-75 13-45 (126)
42 PF01086 Clathrin_lg_ch: Clath 21.6 1.9E+02 0.0042 27.1 5.2 48 34-83 113-160 (225)
43 PF08614 ATG16: Autophagy prot 21.2 4.3E+02 0.0092 23.9 7.2 49 35-83 100-148 (194)
44 KOG4552 Vitamin-D-receptor int 21.1 6.4E+02 0.014 24.8 8.6 48 46-93 62-109 (272)
45 PF03773 DUF318: Predicted per 21.1 26 0.00056 33.6 -0.6 14 240-253 58-71 (307)
46 PF08212 Lipocalin_2: Lipocali 20.5 70 0.0015 27.1 1.9 23 293-315 115-137 (143)
No 1
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=100.00 E-value=4.1e-120 Score=858.98 Aligned_cols=300 Identities=61% Similarity=0.946 Sum_probs=253.1
Q ss_pred CCCCCcccCCccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 1 MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNA 80 (335)
Q Consensus 1 md~~g~~engr~k~d~yk~~~~~w~m~~~~~~~~~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~A 80 (335)
|||+|++| ||+. ||+-. .++..| ..++||++|.|||+||.||+.|++|+++|+++||+|++|||+||.|||+|
T Consensus 1 MDddg~~~--R~wg-~ye~~--~s~K~h--LGLqlMs~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~a 73 (301)
T PF06217_consen 1 MDDDGSLE--RNWG-YYEPQ--NSMKGH--LGLQLMSIMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNA 73 (301)
T ss_pred CCCccccc--cCcc-ccccc--cccccc--ccceeeccccccCcccccccchhccccccccchhhhhhhhhhhhccchhh
Confidence 99999999 9999 99932 444443 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCCCCccccCccCCCCCcccccccccchhhhh-hccccCCCCCCCCCCCcCcCCcc
Q 019800 81 ILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPR 159 (335)
Q Consensus 81 I~eRD~aiaaL~~rensmng~~~~cpp~~g~krg~k~~hH~~~h~~~~~hisea~~-~~~~~~~~aspis~~~~e~~k~K 159 (335)
|+|||++|++|+|++++++ ..||++||+.++.+++||++++ +.+++.+..| ++++++.++.||+.++++.++++
T Consensus 74 i~ERd~a~a~l~~~~~~~n---~~~p~~~~~~~~tk~~~~~q~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 148 (301)
T PF06217_consen 74 IMERDNAIAALQPRNNNGN---HHCPPGCGILPGTKHIHHMQQH--HHPQLQPPPYSTREMHNIDAPPISTAPPESKKSK 148 (301)
T ss_pred cccchhhhhhccccCCCcc---ccCCCCCcccCCCccCCCcccc--cccccCCCCCCccccccccccccccCCcccccCC
Confidence 9999999999999999877 5689999999999999987663 2367788888 79999999999988766666665
Q ss_pred cccccCCCCCCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccccccccccCccccccceeeeeC
Q 019800 160 RYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDE 239 (335)
Q Consensus 160 R~Kr~KesK~~~~~kK~kK~~~k~kk~geDlnr~l~~~k~eWk~~Qdl~~G~n~v~~~~~~~~~~~~~~~~~~~~~~~d~ 239 (335)
+.|+.+..+..+.++ . ++.++.++++++. ++ .. +.+ .+.+.+||++||+||+|+||+
T Consensus 149 ~~k~~~~~~~~k~~k-~----~k~kk~~~~~~~~----------~~-~~-~~~------~~~k~~~k~~dl~in~i~~D~ 205 (301)
T PF06217_consen 149 PPKKRKRPKSPKSPK-P----KKPKKKPSVPNRN----------VN-PP-GSD------QRSKPEKKNQDLVINGINFDE 205 (301)
T ss_pred CCCCCCCCCCCCCCC-C----CCCCCCCCCchhh----------cc-cc-ccc------cccccccccccccccceeecc
Confidence 555444333221111 1 1233333333221 00 00 110 246889999999999999999
Q ss_pred CCCCCccccccCCCccceeccCCcccccccccccccccCCCCCCCCCccccccccchHHHHHHHHHHhhcccCCCCCccc
Q 019800 240 STMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDL 319 (335)
Q Consensus 240 s~~p~p~csctg~~~~cy~wg~ggwqs~cctt~~s~yplp~~~~~~~~r~~grkms~~~f~k~l~~l~~eg~~~~~p~dl 319 (335)
|+||+|||||||+|||||||||||||||||||+||||||||+||||||||||||||+|||+|||+|||+||||||+||||
T Consensus 206 s~mP~PvCSCTG~pqqCYrWG~GGWQSaCCTT~iSmYPLPm~~nkRgaRi~GRKMS~gAF~KlL~rLAaEGydls~PiDL 285 (301)
T PF06217_consen 206 STMPIPVCSCTGVPQQCYRWGNGGWQSACCTTTISMYPLPMSPNKRGARIGGRKMSGGAFKKLLERLAAEGYDLSNPIDL 285 (301)
T ss_pred CCCCCcccccCCCCccccccCCCccccccccccccccccCCCCCCCccccccccccHHHHHHHHHHHHhcccccCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcceeecC
Q 019800 320 KDHWAKHGTNRYITIK 335 (335)
Q Consensus 320 k~~wa~hgtn~~~ti~ 335 (335)
|+||||||||||||||
T Consensus 286 K~hWAKHGTNryvTIk 301 (301)
T PF06217_consen 286 KDHWAKHGTNRYVTIK 301 (301)
T ss_pred HHHHHhcCCcceEecC
Confidence 9999999999999998
No 2
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=99.85 E-value=1.7e-22 Score=193.13 Aligned_cols=209 Identities=25% Similarity=0.258 Sum_probs=147.6
Q ss_pred cccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 019800 16 QYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE---RDNAIASLQ 92 (335)
Q Consensus 16 ~yk~~~~~w~m~~~~~~~~~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e---RD~aiaaL~ 92 (335)
.+|+-.+.=+|. .|-|.+++++||+.||.|++.|++|||+|++|||.||+|||.||+|||+||+. +++.++
T Consensus 19 s~K~hLGLqlMs---~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~ai~ERd~a~a~l~~~~~~~n--- 92 (301)
T PF06217_consen 19 SMKGHLGLQLMS---IMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNAIMERDNAIAALQPRNNNGN--- 92 (301)
T ss_pred cccccccceeec---cccccCcccccccchhccccccccchhhhhhhhhhhhccchhhcccchhhhhhccccCCCcc---
Confidence 467666543443 55588899999999999999999999999999999999999999999999999 776655
Q ss_pred hhhccCCCCCCCCCCCCccccCccCCCCCc-ccccccccchhhhhhccccCCCCCCCCCCCcCcCCccc---ccccCCCC
Q 019800 93 YRENSLGGNMSSCPPGCQISRGVKHMHHPQ-QHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRR---YKRAKEPK 168 (335)
Q Consensus 93 ~rensmng~~~~cpp~~g~krg~k~~hH~~-~h~~~~~hisea~~~~~~~~~~aspis~~~~e~~k~KR---~Kr~KesK 168 (335)
.+. +++|....++++.++.+++++ ++.++...+.+.....+. ++..+.++..+.+++|+ .|.+|..+
T Consensus 93 --~~~----p~~~~~~~~tk~~~~~q~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~k~~~~~~~~k~~k 163 (301)
T PF06217_consen 93 --HHC----PPGCGILPGTKHIHHMQQHHHPQLQPPPYSTREMHNIDAP---PISTAPPESKKSKPPKKRKRPKSPKSPK 163 (301)
T ss_pred --ccC----CCCCcccCCCccCCCcccccccccCCCCCCcccccccccc---ccccCCcccccCCCCCCCCCCCCCCCCC
Confidence 222 345678888998887666332 222221111121111122 44444444444455444 44455444
Q ss_pred CCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccc-------------cccccccCcccccccee
Q 019800 169 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQS-------------TASKSDWKGQVLGLNQV 235 (335)
Q Consensus 169 ~~~~~kK~kK~~~k~kk~geDlnr~l~~~k~eWk~~Qdl~~G~n~v~~~~-------------~~~~~~~~~~~~~~~~~ 235 (335)
+.++.+++++..++++..+.+. ..+.+||+ ||| ++|+|+|++ ..+++.|.+..+.-.+.
T Consensus 164 ~~k~kk~~~~~~~~~~~~~~~~-----~~k~~~k~-~dl--~in~i~~D~s~mP~PvCSCTG~pqqCYrWG~GGWQSaCC 235 (301)
T PF06217_consen 164 PKKPKKKPSVPNRNVNPPGSDQ-----RSKPEKKN-QDL--VINGINFDESTMPIPVCSCTGVPQQCYRWGNGGWQSACC 235 (301)
T ss_pred CCCCCCCCCCchhhcccccccc-----cccccccc-ccc--cccceeeccCCCCCcccccCCCCccccccCCCccccccc
Confidence 4444444455556677666552 37899999 888 799999998 56789999999999999
Q ss_pred eeeCCCCCCccc
Q 019800 236 TFDESTMPPPAC 247 (335)
Q Consensus 236 ~~d~s~~p~p~c 247 (335)
+--+|..|.|+=
T Consensus 236 TT~iSmYPLPm~ 247 (301)
T PF06217_consen 236 TTTISMYPLPMS 247 (301)
T ss_pred cccccccccCCC
Confidence 999999999973
No 3
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.61 E-value=0.01 Score=60.46 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 37 TIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIAS 90 (335)
Q Consensus 37 a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaa 90 (335)
--++-|..|++.|++.++.|.+|.++++.+|.+||+-|..+|.+|++||+.|..
T Consensus 203 ~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~ 256 (499)
T COG4372 203 QNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE 256 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345566778899999999999999999999999999888888888888888763
No 4
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=95.02 E-value=0.073 Score=57.67 Aligned_cols=42 Identities=33% Similarity=0.451 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 42 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 42 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
|+.++.+|+.-|+..+++.++++.++..|+.|++|||.++.+
T Consensus 535 Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~ 576 (828)
T PF04094_consen 535 RERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNR 576 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444554444444
No 5
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.97 E-value=0.11 Score=53.29 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 35 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIAS 90 (335)
Q Consensus 35 ~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaa 90 (335)
...+++-|+..+.-|..|...++.+|.+||.-|.++|.+|+.|++.|.+|+.-+.-
T Consensus 208 r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~ 263 (499)
T COG4372 208 RANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR 263 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888888888888888888887665443
No 6
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=94.10 E-value=0.2 Score=54.46 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 60 IAERDMAFLQRDTAIAERNNAILERDNAIA 89 (335)
Q Consensus 60 i~qRD~AiaqRD~AI~ERD~AI~eRD~aia 89 (335)
++-.+.+.++++.+|..|+.|++|||.+++
T Consensus 546 LAahEaa~AE~E~aLRLREeA~aER~~~~~ 575 (828)
T PF04094_consen 546 LAAHEAAAAEEESALRLREEALAERDRALN 575 (828)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555566666666666666654
No 7
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.01 E-value=5.9 Score=41.36 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=16.6
Q ss_pred CccccccccchHHHHHHHHHHhh
Q 019800 286 HARVGGRKMSGSAFNKLLTRLAA 308 (335)
Q Consensus 286 ~~r~~grkms~~~f~k~l~~l~~ 308 (335)
.+|-|-|.+|...|-+.|..|..
T Consensus 422 a~rpgar~e~~~~~~~rl~~le~ 444 (514)
T TIGR03319 422 AARPGARRESLENYIKRLEKLEE 444 (514)
T ss_pred CCCCCCcccCHHHHHHHHHHHHH
Confidence 34666777888888888777754
No 8
>PRK12704 phosphodiesterase; Provisional
Probab=84.56 E-value=6.4 Score=41.15 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=15.1
Q ss_pred cccccccchHHHHHHHHHHhh
Q 019800 288 RVGGRKMSGSAFNKLLTRLAA 308 (335)
Q Consensus 288 r~~grkms~~~f~k~l~~l~~ 308 (335)
|.|-|..|-..|-+.|.+|-.
T Consensus 430 Rpgar~~~~e~~i~rl~~le~ 450 (520)
T PRK12704 430 RPGARRETLENYIKRLEKLEE 450 (520)
T ss_pred CCCCccccHHHHHHHHHHHHH
Confidence 446666888888888887743
No 9
>PRK12704 phosphodiesterase; Provisional
Probab=83.43 E-value=7.8 Score=40.53 Aligned_cols=38 Identities=8% Similarity=0.261 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 46 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 46 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
|.+|...|..|...|.+|+..|.+|...|.+|...+.+
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~ 128 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 10
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.18 E-value=11 Score=39.53 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 45 ALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 45 AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
.|.+|...|..|...|.+|+..|.++...|.+|...+.+
T Consensus 84 rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee 122 (514)
T TIGR03319 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDE 122 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444443333
No 11
>PRK00106 hypothetical protein; Provisional
Probab=77.30 E-value=11 Score=39.85 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.0
Q ss_pred CccccccccchHHHHHHHHHHhh
Q 019800 286 HARVGGRKMSGSAFNKLLTRLAA 308 (335)
Q Consensus 286 ~~r~~grkms~~~f~k~l~~l~~ 308 (335)
.+|.|-|.+|...|-+.|+.|-.
T Consensus 443 a~Rpgar~~s~~~~i~rl~~lE~ 465 (535)
T PRK00106 443 SARPGARNESMENYIKRLRDLEE 465 (535)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHH
Confidence 45678889999999999999854
No 12
>PRK00106 hypothetical protein; Provisional
Probab=74.19 E-value=22 Score=37.79 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 42 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDN 86 (335)
Q Consensus 42 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~ 86 (335)
|+..|.+|...|..|...+.+|+..|.++...|.+|...+.++..
T Consensus 102 rE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 102 IESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444445555455444433
No 13
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=68.86 E-value=52 Score=30.02 Aligned_cols=44 Identities=18% Similarity=0.362 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 40 AERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 40 ~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
..|+..|..+...|..|+..|.++...|.++...+.++...+.+
T Consensus 88 ~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~ 131 (201)
T PF12072_consen 88 QQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 14
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=60.61 E-value=9.3 Score=33.46 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcccCCCCC--ccch-hhhhhcCC
Q 019800 299 FNKLLTRLAAEGHDLSHP--VDLK-DHWAKHGT 328 (335)
Q Consensus 299 f~k~l~~l~~eg~~~~~p--~dlk-~~wa~hgt 328 (335)
...|+..|...=-||..+ -+|- .-|.||||
T Consensus 60 ~~~l~~~l~~~w~~~~~~~~~~fw~hEW~KHGT 92 (195)
T cd00374 60 DSDLLDELNKYWPDLMPGKDSSFWKHEWNKHGT 92 (195)
T ss_pred cHHHHHHHHhhCcccCCCCCchHHHHHHhcCce
Confidence 346777788777788776 5554 34899998
No 15
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=58.83 E-value=1.1e+02 Score=28.11 Aligned_cols=34 Identities=6% Similarity=0.147 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019800 35 IMTIMAERDAALQERNLATSEKKAAIAERDMAFL 68 (335)
Q Consensus 35 ~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~Aia 68 (335)
|...+.+....|.++.+.+.++..++.+|...+.
T Consensus 75 l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555554444
No 16
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=57.21 E-value=50 Score=27.38 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019800 59 AIAERDMAFLQRDTAI 74 (335)
Q Consensus 59 Ai~qRD~AiaqRD~AI 74 (335)
....|+.+|.+|-++|
T Consensus 69 ~k~~R~~~~~~R~~~i 84 (88)
T PF13300_consen 69 LKEKREKELEERLKKI 84 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 17
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=52.18 E-value=71 Score=28.14 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 44 AALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAIL 82 (335)
Q Consensus 44 ~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~ 82 (335)
.+++++..-++--=.-++|+|+.++.+-++-.|+++.|+
T Consensus 59 ~~~E~~~ar~al~PlLqAE~DR~~lr~~~~~~~~E~~lM 97 (130)
T PF06212_consen 59 LKREKRWARIALLPLLQAEEDRRYLRRLKANREEEAELM 97 (130)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444443333333445555555555555555555443
No 18
>PRK12705 hypothetical protein; Provisional
Probab=51.79 E-value=96 Score=32.91 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=19.7
Q ss_pred CccccccccchHHHHHHHHHHhhcc
Q 019800 286 HARVGGRKMSGSAFNKLLTRLAAEG 310 (335)
Q Consensus 286 ~~r~~grkms~~~f~k~l~~l~~eg 310 (335)
.+|.|.|.+|...|.+.|+.|-.-|
T Consensus 416 aaRpGar~~s~e~yv~rL~~le~i~ 440 (508)
T PRK12705 416 AARPGARRESLDEYVQRLEELEQIA 440 (508)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHh
Confidence 4577888899999999998875444
No 19
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=49.88 E-value=54 Score=27.22 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 42 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 42 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
|...+.+-+.+-.+=+.+-..|+.....|+++|.+|-+.|.+
T Consensus 45 R~~qme~L~~~R~eTe~~R~~re~~k~~R~~~~~~R~~~ir~ 86 (88)
T PF13300_consen 45 RQEQMEELEELRKETEEQRKKREELKEKREKELEERLKKIRE 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333333333333334445555555555555555555544
No 20
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.19 E-value=1.8e+02 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=11.5
Q ss_pred ccchHHHHHHHHHHh--------hcccCCC
Q 019800 293 KMSGSAFNKLLTRLA--------AEGHDLS 314 (335)
Q Consensus 293 kms~~~f~k~l~~l~--------~eg~~~~ 314 (335)
..+-..|..-+..|. .+|.++.
T Consensus 251 ~~~~~~f~~~v~lLn~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 251 GVDRQRFEYAVFLLNKNIAQLCFSQGIDVP 280 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556655444443 4566665
No 21
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=45.31 E-value=1.1e+02 Score=27.09 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 42 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 42 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
|+..|++-+..+..=..+|.||.....+..+++.||..+|.+
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~ 60 (135)
T PRK10947 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 (135)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555666666666666666666666666666
No 22
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.35 E-value=70 Score=32.80 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 40 AERDAALQERNLATSEKKAAI-AERDMAFLQRDTAIAERNNAILERDNAIA 89 (335)
Q Consensus 40 ~ERd~AI~ERd~AlaERd~Ai-~qRD~AiaqRD~AI~ERD~AI~eRD~aia 89 (335)
.||+.-..-| +.+++||+-+ +|| -|+|+|+.+.+||..-++++.++-
T Consensus 335 ~ER~~~~~sR-~L~~~Re~LVsAQ~--~lAE~D~LLRD~~~~~~~~~AiL~ 382 (402)
T COG3551 335 NERAMRELSR-RLSVCREELVSAQR--NLAETDNLLRDRDDTHARLMAILD 382 (402)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4444444444 4555555543 333 556666666666665555655443
No 23
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=43.15 E-value=21 Score=35.00 Aligned_cols=65 Identities=32% Similarity=0.625 Sum_probs=44.8
Q ss_pred CCCccccccCCCcccee-------c---------cCCcccccccccccccccCCCCCCCCCccccccccchHHHHHHHHH
Q 019800 242 MPPPACSCTGVLRQCYK-------W---------GNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTR 305 (335)
Q Consensus 242 ~p~p~csctg~~~~cy~-------w---------g~ggwqs~cctt~~s~yplp~~~~~~~~r~~grkms~~~f~k~l~~ 305 (335)
-|.-+| -....-||. | -+|||++-|=-+.- .=-+-|+-|+.+
T Consensus 41 WP~~~C--d~~~~~C~~~~G~~a~ftIHGLWP~~~~G~~P~~Cn~s~~--------------------Fd~~~isdl~~~ 98 (263)
T KOG1642|consen 41 WPGAYC--DSQRTCCYPPSGKPADFTIHGLWPDYNHGSWPQNCNRSSQ--------------------FDDSKISDLEDS 98 (263)
T ss_pred cCCccc--cCCccccCCCCCCccceEEeeeccCCCCCCCcccCCCccc--------------------CChHHccchhhh
Confidence 344454 666666774 3 37999987744321 223457789999
Q ss_pred HhhcccCCCCCcc-------chhhhhhcCC
Q 019800 306 LAAEGHDLSHPVD-------LKDHWAKHGT 328 (335)
Q Consensus 306 l~~eg~~~~~p~d-------lk~~wa~hgt 328 (335)
|..+=-||+-|-- -|--|-||||
T Consensus 99 L~~~Wp~L~~~s~n~g~~~fW~HEweKHGT 128 (263)
T KOG1642|consen 99 LEKEWPDLYCPSPNGGHESFWKHEWEKHGT 128 (263)
T ss_pred HHhhccccccCCCCCccchhhhhhhhccCc
Confidence 9999999998874 2455899999
No 24
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=34.87 E-value=39 Score=27.33 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019800 60 IAERDMAFLQRDTAIAERNNA 80 (335)
Q Consensus 60 i~qRD~AiaqRD~AI~ERD~A 80 (335)
+=|.|+|..-=-+++.|||.+
T Consensus 42 LYq~DAA~RViArl~kErd~a 62 (70)
T PF08606_consen 42 LYQHDAACRVIARLLKERDEA 62 (70)
T ss_pred HHHHhHHHHHHHHHHHhHHHH
Confidence 333333333333344444433
No 25
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=34.64 E-value=2.1e+02 Score=25.39 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 42 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 42 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
|+..|++-+.++..=...+.||.....+..+..+||..+|.+
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~ 60 (134)
T PRK10328 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINT 60 (134)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555666666666666666666666666666
No 26
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=34.49 E-value=1.2e+02 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019800 35 IMTIMAERDAALQERNL 51 (335)
Q Consensus 35 ~~a~i~ERd~AI~ERd~ 51 (335)
+..+|.++..|..|..+
T Consensus 154 ~~~ai~~k~~a~q~~~~ 170 (196)
T cd03401 154 FTKAVEAKQVAQQEAER 170 (196)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 27
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=29.72 E-value=16 Score=31.36 Aligned_cols=16 Identities=31% Similarity=0.881 Sum_probs=14.3
Q ss_pred CCCccceeccCCcccc
Q 019800 251 GVLRQCYKWGNGGWQS 266 (335)
Q Consensus 251 g~~~~cy~wg~ggwqs 266 (335)
...+|++||..|+|+|
T Consensus 220 ~~~~q~~Rw~~~~~~~ 235 (235)
T cd06434 220 KFLKQQLRWSRSNWRS 235 (235)
T ss_pred HHHHHhhhhhhcccCC
Confidence 5678999999999987
No 28
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=28.75 E-value=33 Score=30.16 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=19.3
Q ss_pred HHHHHHhhcccCCCCCc--cchhh-hhhcCC
Q 019800 301 KLLTRLAAEGHDLSHPV--DLKDH-WAKHGT 328 (335)
Q Consensus 301 k~l~~l~~eg~~~~~p~--dlk~~-wa~hgt 328 (335)
.|+..|...=-+|..+- +|=.| |.||||
T Consensus 65 ~~~~~L~~~Wp~~~~~~~~~fw~hEW~KHGt 95 (189)
T PF00445_consen 65 ELKSELDKYWPDLKNSNSESFWKHEWEKHGT 95 (189)
T ss_dssp GGHHHHHHHSTBSSSSHHHHHHHHHHHHTGG
T ss_pred HHhhhhhhhhhhhccchhhhhHHhcceeeeE
Confidence 56667776666776664 55444 999998
No 29
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=28.75 E-value=3.3e+02 Score=28.51 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=22.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 019800 49 RNLATSEKKAAIAERDMAFLQR-DTAIAERNNAILERDNAIASL 91 (335)
Q Consensus 49 Rd~AlaERd~Ai~qRD~AiaqR-D~AI~ERD~AI~eRD~aiaaL 91 (335)
++++-++|++--.+|-.|-.|= +.+-+||-+|+++|-...++.
T Consensus 340 ~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T PRK00247 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAV 383 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3445555555555555544332 235666777776655555544
No 30
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.17 E-value=1.9e+02 Score=27.49 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHh
Q 019800 78 NNAILERDNAIASL 91 (335)
Q Consensus 78 D~AI~eRD~aiaaL 91 (335)
+.-+++|..|+..|
T Consensus 241 ~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 241 NDGFLARLEALWEL 254 (301)
T ss_pred CCCHHHHHHHHHHH
Confidence 44456677777766
No 31
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=28.16 E-value=2e+02 Score=27.57 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 35 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAI 88 (335)
Q Consensus 35 ~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~ai 88 (335)
|+....|=+++..+=++++..|+.-|.+= +.--..|++|||.|-..-...+
T Consensus 10 Ll~TTlELE~~k~~A~EElRk~eeqi~~L---~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 10 LLYTTLELEATKMEANEELRKREEQIAHL---KDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555555555554433211 1112335666666555544333
No 32
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.55 E-value=3.1e+02 Score=23.84 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 55 EKKAAIAERDMAFLQRDTAIAERNNAIL 82 (335)
Q Consensus 55 ERd~Ai~qRD~AiaqRD~AI~ERD~AI~ 82 (335)
||+..-++||.++.+=..--+|-..||.
T Consensus 52 Ere~~r~~R~e~~~aykKkr~e~~kal~ 79 (106)
T KOG4819|consen 52 EREKVRADRDEQVKAYKKKRLEKTKALS 79 (106)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333333
No 33
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=27.51 E-value=3.4e+02 Score=22.05 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 66 AFLQRDTAIAERNNAILERDNAIAS 90 (335)
Q Consensus 66 AiaqRD~AI~ERD~AI~eRD~aiaa 90 (335)
|+=|.|+|..-=-+.+.|||.+..+
T Consensus 41 aLYq~DAA~RViArl~kErd~ar~~ 65 (70)
T PF08606_consen 41 ALYQHDAACRVIARLLKERDEAREA 65 (70)
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHH
Confidence 3334444433333334444444433
No 34
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=26.92 E-value=40 Score=27.60 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcccCCCCCccc
Q 019800 297 SAFNKLLTRLAAEGHDLSHPVDL 319 (335)
Q Consensus 297 ~~f~k~l~~l~~eg~~~~~p~dl 319 (335)
.+|.+.-.+|.++||..-||+.+
T Consensus 16 ~~f~~~a~~L~~~G~~vvnPa~~ 38 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEVVNPAEL 38 (92)
T ss_pred HHHHHHHHHHHHCCCEEeCchhh
Confidence 68999999999999999999998
No 35
>PF14799 FAM195: FAM195 family
Probab=25.42 E-value=29 Score=29.18 Aligned_cols=12 Identities=33% Similarity=1.024 Sum_probs=10.5
Q ss_pred CCccchhhhhhc
Q 019800 315 HPVDLKDHWAKH 326 (335)
Q Consensus 315 ~p~dlk~~wa~h 326 (335)
.|+||-++|+++
T Consensus 81 kPfDLE~wW~~R 92 (99)
T PF14799_consen 81 KPFDLEEWWGQR 92 (99)
T ss_pred cccCHHHHHHHH
Confidence 599999999986
No 36
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=25.22 E-value=2.8e+02 Score=24.62 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=26.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019800 47 QERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASL 91 (335)
Q Consensus 47 ~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaaL 91 (335)
.-|+..+.+=+.++..=+.++.+|...-.+...++.+|..+|+.+
T Consensus 17 ~~re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~ 61 (135)
T PRK10947 17 QARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 (135)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556666666666666666666676666654
No 37
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=23.54 E-value=5.3e+02 Score=23.00 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 019800 36 MTIMAERDAALQERNLATSEKKAAI-------AERDMAFLQRDTAIAERNNAILERDNAIASLQYREN 96 (335)
Q Consensus 36 ~a~i~ERd~AI~ERd~AlaERd~Ai-------~qRD~AiaqRD~AI~ERD~AI~eRD~aiaaL~~ren 96 (335)
.+-+..-...+.+-..++.+++..| .+-+.+-++-+..+..=+..+..|+.-|.-| .+||
T Consensus 25 ~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL-~~EN 91 (135)
T TIGR03495 25 RADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERL-KREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC
Confidence 3333333444444444444444443 3334444555555555555555577777665 3444
No 38
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.14 E-value=6.6e+02 Score=23.92 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 019800 35 IMTIMAERDAALQE 48 (335)
Q Consensus 35 ~~a~i~ERd~AI~E 48 (335)
|..+|.+|+..|..
T Consensus 30 i~~~l~eR~~~I~~ 43 (250)
T PRK14474 30 IIQVMKKRQQRIAN 43 (250)
T ss_pred HHHHHHHHHHHHHH
Confidence 55677777766554
No 39
>COG0701 Predicted permeases [General function prediction only]
Probab=22.60 E-value=24 Score=35.13 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=11.5
Q ss_pred CCCCCccccccCCC
Q 019800 240 STMPPPACSCTGVL 253 (335)
Q Consensus 240 s~~p~p~csctg~~ 253 (335)
.+.+-|+|||+-+|
T Consensus 68 ~G~~~p~CsC~~vP 81 (317)
T COG0701 68 LGLLLPVCSCGAVP 81 (317)
T ss_pred HcccchhhhcccHH
Confidence 47789999999765
No 40
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.53 E-value=5e+02 Score=22.62 Aligned_cols=9 Identities=0% Similarity=0.353 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 019800 54 SEKKAAIAE 62 (335)
Q Consensus 54 aERd~Ai~q 62 (335)
++|++++.+
T Consensus 58 ~~R~e~~~a 66 (106)
T KOG4819|consen 58 ADRDEQVKA 66 (106)
T ss_pred HhHHHHHHH
Confidence 333333333
No 41
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.41 E-value=4.4e+02 Score=21.59 Aligned_cols=33 Identities=9% Similarity=0.297 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 43 DAALQERNLATSEKKAAIAERDMAFLQRDTAIA 75 (335)
Q Consensus 43 d~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ 75 (335)
+.+|..+...+..+...+.+|...|.+++.-|.
T Consensus 13 ~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~ 45 (126)
T PF13863_consen 13 QLALDTKREEIERREEQLKQREEELEKKEQELE 45 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 42
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=21.57 E-value=1.9e+02 Score=27.09 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 34 QIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 34 ~~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
.|..-..+|+..|+||+++-.+++..| ++.|..+.|....+|+.-|..
T Consensus 113 ~ireWre~~~~~i~ekD~~e~~kk~e~--~~~A~k~lddfY~~~~~k~e~ 160 (225)
T PF01086_consen 113 AIREWREERDKRIEEKDAEEEEKKEEI--KEKAKKELDDFYENRNEKKEK 160 (225)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888888888777766655 456777777777777777665
No 43
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.22 E-value=4.3e+02 Score=23.86 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 35 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 35 ~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
+...+.+.+..+.+....|++=...+..=...+.+++..|.|.+.++..
T Consensus 100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666665555555556666666666666666655
No 44
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=21.14 E-value=6.4e+02 Score=24.83 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019800 46 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQY 93 (335)
Q Consensus 46 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaaL~~ 93 (335)
+.++....++|+.++.+=++-+..||..|+.=..-+.+-|-++++.-|
T Consensus 62 llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~f 109 (272)
T KOG4552|consen 62 LLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACF 109 (272)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666655555556666655444
No 45
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=21.06 E-value=26 Score=33.65 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.7
Q ss_pred CCCCCccccccCCC
Q 019800 240 STMPPPACSCTGVL 253 (335)
Q Consensus 240 s~~p~p~csctg~~ 253 (335)
.+++.|+|+|..+|
T Consensus 58 ~G~~~p~C~c~~~P 71 (307)
T PF03773_consen 58 LGALLPVCSCGAVP 71 (307)
T ss_pred HHhccCCCcccHHH
Confidence 47899999998765
No 46
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=20.46 E-value=70 Score=27.09 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=17.1
Q ss_pred ccchHHHHHHHHHHhhcccCCCC
Q 019800 293 KMSGSAFNKLLTRLAAEGHDLSH 315 (335)
Q Consensus 293 kms~~~f~k~l~~l~~eg~~~~~ 315 (335)
-||...+.++|.++...|||.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~G~d~~~ 137 (143)
T PF08212_consen 115 QLSEETYAEILDRAKQQGYDVSK 137 (143)
T ss_dssp S--HHHHHHHHHHHHHTT--GGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 47889999999999999999874
Done!