Query 019800
Match_columns 335
No_of_seqs 120 out of 132
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 07:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 89.3 0.92 3.1E-05 35.4 6.3 38 46-83 21-58 (72)
2 3nmd_A CGMP dependent protein 86.5 1.9 6.6E-05 33.6 6.5 42 39-80 21-62 (72)
3 3oja_B Anopheles plasmodium-re 77.3 15 0.00051 35.6 10.4 12 91-102 574-585 (597)
4 3gp4_A Transcriptional regulat 72.4 16 0.00055 30.3 8.1 63 29-91 59-128 (142)
5 3bk6_A PH stomatin; archaea, t 55.7 17 0.00057 30.7 5.2 15 35-49 118-132 (188)
6 3he4_A Synzip6; heterodimeric 55.0 29 0.00098 25.5 5.6 24 41-64 30-53 (56)
7 3he4_A Synzip6; heterodimeric 53.6 31 0.0011 25.3 5.5 27 45-71 27-53 (56)
8 3iz5_T 60S ribosomal protein L 51.1 35 0.0012 31.3 6.8 13 102-114 192-204 (209)
9 3nr7_A DNA-binding protein H-N 37.6 1.4E+02 0.0049 23.4 7.6 36 32-67 26-61 (86)
10 2pqx_A Ribonuclease I; hydrola 33.2 28 0.00095 31.1 3.2 28 301-328 107-135 (245)
11 3cl6_A PUUE allantoinase; URIC 28.9 10 0.00035 34.5 -0.4 38 289-326 262-300 (308)
12 3tla_A MCCF; serine protease, 27.2 13 0.00045 35.7 0.0 10 299-308 279-288 (371)
13 4g2c_A DYP2; DYE peroxidase, o 24.6 21 0.00073 35.9 1.0 21 129-149 19-39 (493)
14 3hh0_A Transcriptional regulat 24.5 1E+02 0.0035 25.5 5.0 28 29-56 61-88 (146)
15 1bb1_B Designed, thermostable 23.3 1.4E+02 0.0046 20.3 4.4 19 37-55 5-23 (36)
16 1ydx_A Type I restriction enzy 23.1 17 0.0006 33.1 0.0 6 115-120 3-8 (406)
17 2yjp_A Putative ABC transporte 22.5 18 0.00062 31.0 0.0 19 286-306 164-182 (291)
18 3nr7_A DNA-binding protein H-N 21.4 1.6E+02 0.0055 23.1 5.2 40 44-83 24-63 (86)
19 4g1u_A Hemin transport system 21.2 20 0.00069 34.5 0.0 6 115-120 3-8 (357)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.34 E-value=0.92 Score=35.45 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 46 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 46 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
|.|-..+|.+|++.|.+||.-|.+.+..|.|+|..|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444555555555554444
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.46 E-value=1.9 Score=33.64 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 39 MAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNA 80 (335)
Q Consensus 39 i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~A 80 (335)
|.|=+.+|.+|++.|.+||.-|.+.+..|.++|..|.+=...
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666666666666666666554443
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.28 E-value=15 Score=35.59 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=4.6
Q ss_pred hhhhhccCCCCC
Q 019800 91 LQYRENSLGGNM 102 (335)
Q Consensus 91 L~~rensmng~~ 102 (335)
|.-.+..+++|+
T Consensus 574 ~~~l~~~~~~~~ 585 (597)
T 3oja_B 574 VKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHTTC---
T ss_pred HHHHHHHhcCCC
Confidence 333456656553
No 4
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=72.35 E-value=16 Score=30.26 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 019800 29 QPSMKQIMTIMAERD---AALQERNLATSEKKAAIAERDMAFLQRDT----AIAERNNAILERDNAIASL 91 (335)
Q Consensus 29 ~~~~~~~~a~i~ERd---~AI~ERd~AlaERd~Ai~qRD~AiaqRD~----AI~ERD~AI~eRD~aiaaL 91 (335)
..++.+|..++...+ ..+.++...+.++...|.++=..+.+.-. .|..=+..+..+++.++.+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 466677666554322 23444444444444444443333333322 2333334444566665543
No 5
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=55.70 E-value=17 Score=30.72 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 019800 35 IMTIMAERDAALQER 49 (335)
Q Consensus 35 ~~a~i~ERd~AI~ER 49 (335)
+..+|.++-.|-.||
T Consensus 118 v~~a~~~~~~Aere~ 132 (188)
T 3bk6_A 118 MQKAMARQAEAERER 132 (188)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444554444443333
No 6
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.02 E-value=29 Score=25.47 Aligned_cols=24 Identities=46% Similarity=0.502 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 019800 41 ERDAALQERNLATSEKKAAIAERD 64 (335)
Q Consensus 41 ERd~AI~ERd~AlaERd~Ai~qRD 64 (335)
|-|.|-.|+|-|-.|+|-|-+|||
T Consensus 30 endnanlekdianlekdianlerd 53 (56)
T 3he4_A 30 ENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHHh
Confidence 333343344433333333333333
No 7
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=53.61 E-value=31 Score=25.30 Aligned_cols=27 Identities=44% Similarity=0.437 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019800 45 ALQERNLATSEKKAAIAERDMAFLQRD 71 (335)
Q Consensus 45 AI~ERd~AlaERd~Ai~qRD~AiaqRD 71 (335)
|-.|-|.|-.|+|-|-+|.|.|-.+||
T Consensus 27 arlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 444444454455444444444444444
No 8
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=51.11 E-value=35 Score=31.27 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=0.0
Q ss_pred CCCCCCCCccccC
Q 019800 102 MSSCPPGCQISRG 114 (335)
Q Consensus 102 ~~~cpp~~g~krg 114 (335)
.+||..+||++-|
T Consensus 192 ~~~~~~~~~~~~~ 204 (209)
T 3iz5_T 192 TSGCSSSCGTKEG 204 (209)
T ss_dssp -------------
T ss_pred cCCcccccccccc
Confidence 4579999998754
No 9
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=37.60 E-value=1.4e+02 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019800 32 MKQIMTIMAERDAALQERNLATSEKKAAIAERDMAF 67 (335)
Q Consensus 32 ~~~~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~Ai 67 (335)
+.++..++.-=+..|.||..+..+..++.++|...+
T Consensus 26 le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl 61 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKL 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444454444444444444443333
No 10
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=33.17 E-value=28 Score=31.13 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=15.4
Q ss_pred HHHHHHhhcccCCCCCccchhh-hhhcCC
Q 019800 301 KLLTRLAAEGHDLSHPVDLKDH-WAKHGT 328 (335)
Q Consensus 301 k~l~~l~~eg~~~~~p~dlk~~-wa~hgt 328 (335)
.|++.|...=-||.....|=.| |.||||
T Consensus 107 ~l~~~L~~~WP~~~~~~~fw~hEW~KHGT 135 (245)
T 2pqx_A 107 ETAAKLSEVMPGAGGRSCLERYEYAKHGA 135 (245)
T ss_dssp HHHHHHHHHCTTSSTTTCHHHHHHHHHTG
T ss_pred HHHHHHHHhCCCCCCcchHHHHHhhhCCe
Confidence 3555555443344333345444 899998
No 11
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=28.93 E-value=10 Score=34.45 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=32.6
Q ss_pred ccccccchHHHHHHHHHHhhcc-cCCCCCccchhhhhhc
Q 019800 289 VGGRKMSGSAFNKLLTRLAAEG-HDLSHPVDLKDHWAKH 326 (335)
Q Consensus 289 ~~grkms~~~f~k~l~~l~~eg-~~~~~p~dlk~~wa~h 326 (335)
+.|+.-...++.+||..|.+.| +-|....+|-+||.++
T Consensus 262 ~~g~~~~~~aL~~~l~~l~~~g~v~~~T~~eia~~~~~~ 300 (308)
T 3cl6_A 262 LIGRPARLAALQRFIEYAKSHEQVWFTRRVDIARHWHAT 300 (308)
T ss_dssp HHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEecHHHHHHHHHHh
Confidence 4456556789999999999987 9999999999999864
No 12
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=27.19 E-value=13 Score=35.72 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 019800 299 FNKLLTRLAA 308 (335)
Q Consensus 299 f~k~l~~l~~ 308 (335)
+.+.|..|..
T Consensus 279 idRmL~qL~~ 288 (371)
T 3tla_A 279 VERLFSMLKL 288 (371)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 13
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=24.56 E-value=21 Score=35.93 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=5.5
Q ss_pred ccchhhhhhccccCCCCCCCC
Q 019800 129 HHVSEAAYSREMHTGDALPVS 149 (335)
Q Consensus 129 ~hisea~~~~~~~~~~aspis 149 (335)
+||-.-+|...|.|.=..|++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ 39 (493)
T 4g2c_A 19 SHMENLYFQGAMPVDLSTTLS 39 (493)
T ss_dssp -------------CCTTSCBC
T ss_pred chhhhhhcccceeeeccCccc
Confidence 377654448888887777754
No 14
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.55 E-value=1e+02 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=13.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019800 29 QPSMKQIMTIMAERDAALQERNLATSEK 56 (335)
Q Consensus 29 ~~~~~~~~a~i~ERd~AI~ERd~AlaER 56 (335)
..++.+|..++...+..+.++...+.+.
T Consensus 61 G~sl~~I~~~l~~~~~~~~~~~~~L~~q 88 (146)
T 3hh0_A 61 GFSLGEIQNIILQRDIETEVFLRQMHFQ 88 (146)
T ss_dssp TCCHHHHHHHHTSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 3556666666554433333343333333
No 15
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.32 E-value=1.4e+02 Score=20.26 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 019800 37 TIMAERDAALQERNLATSE 55 (335)
Q Consensus 37 a~i~ERd~AI~ERd~AlaE 55 (335)
++|.|-.+||+|--.|+.|
T Consensus 5 aaikeeqaaieeeiqaike 23 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKE 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 16
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=23.13 E-value=17 Score=33.08 Aligned_cols=6 Identities=50% Similarity=0.849 Sum_probs=0.0
Q ss_pred ccCCCC
Q 019800 115 VKHMHH 120 (335)
Q Consensus 115 ~k~~hH 120 (335)
|||+||
T Consensus 3 ~~~~~~ 8 (406)
T 1ydx_A 3 HHHHHH 8 (406)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
No 17
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=22.48 E-value=18 Score=30.97 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=10.4
Q ss_pred CccccccccchHHHHHHHHHH
Q 019800 286 HARVGGRKMSGSAFNKLLTRL 306 (335)
Q Consensus 286 ~~r~~grkms~~~f~k~l~~l 306 (335)
|.|||- ..+..+..+|.++
T Consensus 164 gk~v~~--~~g~~~~~~l~~~ 182 (291)
T 2yjp_A 164 DQTLLV--NKGTTADAFFTKS 182 (291)
T ss_dssp TSEEEE--ETTSHHHHHHHHH
T ss_pred CCEEEE--ecCCcHHHHHHHh
Confidence 455554 2455666666554
No 18
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.35 E-value=1.6e+02 Score=23.14 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=22.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800 44 AALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 83 (335)
Q Consensus 44 ~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 83 (335)
.-|.+-+..+..=...+.+|-....+..++..||..-|.+
T Consensus 24 l~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~ 63 (86)
T 3nr7_A 24 STLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 63 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555666666655555
No 19
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.20 E-value=20 Score=34.47 Aligned_cols=6 Identities=50% Similarity=0.849 Sum_probs=0.0
Q ss_pred ccCCCC
Q 019800 115 VKHMHH 120 (335)
Q Consensus 115 ~k~~hH 120 (335)
|||+||
T Consensus 3 ~~~~~~ 8 (357)
T 4g1u_A 3 HHHHHH 8 (357)
T ss_dssp ------
T ss_pred Cccccc
Confidence 344333
Done!