BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019801
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 4/239 (1%)
Query: 37 EDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRH 96
+D+ H + SLE+LY G + KL+L++ ++ G G+K R
Sbjct: 12 KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 97 LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITF 156
+GP MIQ+ Q C+ C GTG+ I+ KDRC C G KV E+K+LEV VE GM++GQ+I F
Sbjct: 72 MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 157 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQ 216
GEAD+APD + GD+VF++ ++ H FKR G+DL YE + L A+ G +FAL H+ G
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 217 LLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALE 273
L + PGEV+ P K I +GMP+ + G L I FT++ P++ + + +K LE
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY-GNLIIKFTIKDPENHFTSEENLKKLE 248
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 130 GDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGED 189
G + E K+L + V+KG + G KITFP E D+ + + DIVFVL+ K H FKR G D
Sbjct: 35 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSD 94
Query: 190 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 249
+ Y +SL EALCG + LDGR + + +V++P + + EG+PL + P +
Sbjct: 95 VIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKR 152
Query: 250 GKLYIHFTVEFPDSLTPDQVKALEAILP 277
G L I F V FP+ + LE +LP
Sbjct: 153 GDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 130 GDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGED 189
G + E K+L + V+KG + G KITFP E D+ + + DIVFVL+ K H FKR G D
Sbjct: 44 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSD 103
Query: 190 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 249
+ Y +SL EALCG + LDGR + + +V++P + + EG+PL + P +
Sbjct: 104 VIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKR 161
Query: 250 GKLYIHFTVEFPDSLTPDQVKALEAILP 277
G L I F V FP+ + LE +LP
Sbjct: 162 GDLIIEFEVIFPERIPQTSRTVLEQVLP 189
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 130 GDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGED 189
G + E K+L + V+KG + G KITFP E D+ + + DIVFVL+ K H FKR G D
Sbjct: 37 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSD 96
Query: 190 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 249
+ Y +SL EALCG + LDGR + + +V++P + + EG+PL + P +
Sbjct: 97 VIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKR 154
Query: 250 GKLYIHFTVEFPDSLTPDQVKALEAILP 277
G L I F V FP+ + LE +LP
Sbjct: 155 GDLIIEFEVIFPERIPQTSRTVLEQVLP 182
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 132 KVVQEKKVLEVIVEKGMQNGQKITFPGEAD-EAPDTVTGDIVFVLQQKEHPKFKRKGEDL 190
KV E+ ++EV ++ G ++G K+T+ GE D E+P T GD+V ++Q K HP+F R L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 191 FYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKG 250
+ T+ L AL GF +T LD R L I E+V P + K + EG P+ +P KG
Sbjct: 96 IXKVTIPLVRALTGFTCPVTTLDNRNLQIPIK--EIVNPKTRKIVPNEGXPIKNQPGQKG 153
Query: 251 KLYIHFTVEFPDSLTPDQVKALEAIL 276
L + F + FP SLTP+Q K ++ L
Sbjct: 154 DLILEFDICFPKSLTPEQKKLIKEAL 179
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 42 PLKVSLEDLYLGTSKKLSLSR 62
PL V+LE+LYLG KK+ ++R
Sbjct: 9 PLLVTLEELYLGKRKKIKVTR 29
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 129 KGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 187
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 188 EDLFYEHTLSLTEALCGFQFALTHLDGRQL-LIKSNPGEVVKPDSYKAINEEGMPLYQRP 246
+DL Y LS E+L GF + +DGR L L + P V+P +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 247 FMKGKLYIHFTVEFPDSLTPDQVKALE 273
+G L + + V++P SL Q +A++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 129 KGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 187
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 188 EDLFYEHTLSLTEALCGFQFALTHLDGRQL-LIKSNPGEVVKPDSYKAINEEGMPLYQRP 246
+DL Y LS E+L GF + +DGR L L + P V+P +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 247 FMKGKLYIHFTVEFPDSLTPDQVKALE 273
+G L + + V++P SL Q +A++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 183 FKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 242
FKR G+DL YE + L A+ G +FAL H+ G L + PGEV+ P K I +GMP+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 243 YQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGM-TDMELDEC 292
+ G L I FT++FP++ + + +K LE ILP R + + +DEC
Sbjct: 62 PKYGGY-GNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDEC 113
>pdb|2DXL|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXL|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXN|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXN|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
Length = 274
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 197 SLTEALCGFQFALTHLDGRQLLIKSNPGEV 226
SLT CG +LT RQ LI + PG V
Sbjct: 187 SLTRIFCGHNHSLTMTQYRQALISTLPGTV 216
>pdb|2ZO9|B Chain B, Malonate-Bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (Gpdq) And Characterization
Of The Native Fe2+ Metal Ion Preference
pdb|2ZO9|C Chain C, Malonate-Bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (Gpdq) And Characterization
Of The Native Fe2+ Metal Ion Preference
pdb|2ZOA|A Chain A, Malonate-bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (gpdq) Collected At 1.280
Angstrom
pdb|2ZOA|B Chain B, Malonate-bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (gpdq) Collected At 1.280
Angstrom
pdb|3D03|A Chain A, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|B Chain B, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|C Chain C, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|D Chain D, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|E Chain E, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|F Chain F, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
Length = 274
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 197 SLTEALCGFQFALTHLDGRQLLIKSNPGEV 226
SLT CG +LT RQ LI + PG V
Sbjct: 187 SLTRIFCGHNHSLTMTQYRQALISTLPGTV 216
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 123
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 392 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 424
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 123
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 123
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,131,568
Number of Sequences: 62578
Number of extensions: 350455
Number of successful extensions: 896
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 29
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)