Query 019801
Match_columns 335
No_of_seqs 355 out of 1843
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 9.3E-77 2E-81 583.4 33.3 318 7-335 100-421 (421)
2 COG0484 DnaJ DnaJ-class molecu 100.0 6.5E-67 1.4E-71 497.9 30.0 260 9-279 90-351 (371)
3 PRK14296 chaperone protein Dna 100.0 3.4E-63 7.4E-68 482.3 30.1 259 9-278 100-361 (372)
4 PRK14278 chaperone protein Dna 100.0 6.2E-61 1.3E-65 467.6 30.8 263 8-278 86-350 (378)
5 PRK14298 chaperone protein Dna 100.0 1.1E-60 2.5E-65 465.3 29.3 260 8-278 90-351 (377)
6 PRK14277 chaperone protein Dna 100.0 1.8E-60 4E-65 465.6 30.1 262 9-278 101-365 (386)
7 PRK14276 chaperone protein Dna 100.0 1.9E-60 4.1E-65 464.7 29.9 261 8-278 94-356 (380)
8 PRK14287 chaperone protein Dna 100.0 3.4E-60 7.4E-65 461.3 30.7 261 8-278 86-348 (371)
9 PRK14288 chaperone protein Dna 100.0 1.9E-60 4.1E-65 462.8 28.7 255 11-278 91-345 (369)
10 PRK14280 chaperone protein Dna 100.0 3.7E-60 7.9E-65 462.1 29.9 260 9-278 92-353 (376)
11 PRK14286 chaperone protein Dna 100.0 5.2E-60 1.1E-64 460.2 29.6 260 9-278 95-357 (372)
12 PRK14297 chaperone protein Dna 100.0 1.1E-59 2.5E-64 459.4 29.6 263 9-279 95-359 (380)
13 PRK14281 chaperone protein Dna 100.0 2.3E-59 4.9E-64 459.3 29.9 238 34-278 134-372 (397)
14 PRK14285 chaperone protein Dna 100.0 2.7E-59 5.9E-64 454.1 28.6 259 9-280 95-355 (365)
15 PRK14282 chaperone protein Dna 100.0 6.2E-59 1.3E-63 452.6 29.8 259 12-278 103-363 (369)
16 TIGR02349 DnaJ_bact chaperone 100.0 6.4E-59 1.4E-63 450.7 29.4 262 9-278 90-353 (354)
17 PRK14279 chaperone protein Dna 100.0 7.2E-59 1.6E-63 454.8 29.4 235 32-278 142-378 (392)
18 PRK14284 chaperone protein Dna 100.0 1.1E-58 2.5E-63 453.7 28.3 258 11-278 105-366 (391)
19 KOG0712 Molecular chaperone (D 100.0 6.3E-59 1.4E-63 437.6 21.1 255 14-276 83-337 (337)
20 PRK14295 chaperone protein Dna 100.0 9.3E-58 2E-62 446.5 29.6 236 32-278 135-372 (389)
21 PRK14301 chaperone protein Dna 100.0 6.6E-58 1.4E-62 445.6 28.0 256 10-278 93-350 (373)
22 PRK14290 chaperone protein Dna 100.0 2.3E-57 5.1E-62 441.0 30.0 265 8-280 90-358 (365)
23 PRK14293 chaperone protein Dna 100.0 3.9E-57 8.5E-62 440.7 29.8 264 9-278 86-354 (374)
24 PRK10767 chaperone protein Dna 100.0 4.2E-57 9E-62 440.4 29.5 254 10-278 93-348 (371)
25 PRK14300 chaperone protein Dna 100.0 6.7E-57 1.4E-61 438.6 30.1 258 9-277 90-351 (372)
26 PRK14294 chaperone protein Dna 100.0 5.2E-57 1.1E-61 438.6 28.3 258 9-278 91-350 (366)
27 PRK14292 chaperone protein Dna 100.0 2.4E-56 5.3E-61 435.0 30.3 261 8-277 85-347 (371)
28 PRK14291 chaperone protein Dna 100.0 6.4E-56 1.4E-60 433.1 29.7 261 8-279 91-371 (382)
29 PRK14289 chaperone protein Dna 100.0 1.7E-55 3.8E-60 430.9 30.4 239 33-278 124-364 (386)
30 PRK14283 chaperone protein Dna 100.0 1.6E-55 3.5E-60 429.9 27.9 240 32-278 115-356 (378)
31 PRK10266 curved DNA-binding pr 100.0 3.4E-38 7.3E-43 300.1 24.2 201 8-278 92-293 (306)
32 PRK14299 chaperone protein Dna 100.0 2.5E-38 5.5E-43 298.9 22.0 184 9-277 97-285 (291)
33 TIGR03835 termin_org_DnaJ term 100.0 4E-33 8.7E-38 282.1 17.4 158 35-259 655-812 (871)
34 PF01556 CTDII: DnaJ C termina 99.9 3.8E-23 8.1E-28 159.3 7.0 81 189-271 1-81 (81)
35 KOG0713 Molecular chaperone (D 99.8 2.3E-19 5.1E-24 168.0 5.6 227 11-266 100-328 (336)
36 KOG0715 Molecular chaperone (D 99.7 7.5E-18 1.6E-22 158.7 7.0 171 8-200 117-288 (288)
37 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 4.1E-15 8.9E-20 110.0 6.7 65 66-132 1-66 (66)
38 PRK14300 chaperone protein Dna 99.5 2.1E-13 4.5E-18 133.4 10.8 129 49-191 149-346 (372)
39 COG0484 DnaJ DnaJ-class molecu 99.5 1E-13 2.3E-18 133.2 8.4 133 47-193 144-346 (371)
40 PRK14282 chaperone protein Dna 99.5 1.1E-13 2.3E-18 135.3 8.3 133 48-194 155-360 (369)
41 PRK14294 chaperone protein Dna 99.4 7.1E-13 1.5E-17 129.4 8.2 133 49-195 148-348 (366)
42 PRK14285 chaperone protein Dna 99.4 7.7E-13 1.7E-17 129.0 8.3 131 49-193 150-349 (365)
43 PRK14290 chaperone protein Dna 99.4 7.3E-13 1.6E-17 129.3 7.8 131 49-194 153-353 (365)
44 PRK14298 chaperone protein Dna 99.4 8.4E-13 1.8E-17 129.3 7.3 132 49-194 145-348 (377)
45 PRK14277 chaperone protein Dna 99.4 2.6E-12 5.5E-17 126.3 10.2 170 6-189 101-357 (386)
46 PRK14279 chaperone protein Dna 99.3 2.4E-12 5.2E-17 126.6 8.3 126 49-188 177-369 (392)
47 PRK14284 chaperone protein Dna 99.3 3.2E-12 6.8E-17 125.9 8.3 131 49-193 162-362 (391)
48 PRK10767 chaperone protein Dna 99.3 2.5E-12 5.3E-17 125.9 7.0 132 49-194 146-345 (371)
49 PRK14301 chaperone protein Dna 99.3 3.9E-12 8.5E-17 124.4 7.5 131 49-193 148-346 (373)
50 PRK14278 chaperone protein Dna 99.3 7E-12 1.5E-16 122.9 8.9 127 49-189 143-342 (378)
51 PRK14288 chaperone protein Dna 99.3 9.6E-12 2.1E-16 121.5 9.5 130 47-191 142-339 (369)
52 TIGR02349 DnaJ_bact chaperone 99.3 7.4E-12 1.6E-16 121.8 8.2 130 49-192 147-348 (354)
53 PRK14295 chaperone protein Dna 99.3 7.6E-12 1.6E-16 123.0 7.5 130 48-191 169-366 (389)
54 PRK14287 chaperone protein Dna 99.3 9.9E-12 2.1E-16 121.5 7.4 133 48-194 141-345 (371)
55 PRK14293 chaperone protein Dna 99.2 1.5E-11 3.3E-16 120.4 7.7 132 49-194 147-351 (374)
56 PRK14286 chaperone protein Dna 99.2 1.2E-11 2.6E-16 120.9 6.9 129 49-191 154-351 (372)
57 PRK14292 chaperone protein Dna 99.2 2.3E-11 5.1E-16 119.0 8.0 145 35-192 128-343 (371)
58 PRK14281 chaperone protein Dna 99.2 2.7E-11 5.8E-16 119.5 8.4 125 49-188 167-363 (397)
59 PRK14280 chaperone protein Dna 99.2 5.1E-11 1.1E-15 116.8 9.9 128 49-190 147-346 (376)
60 PRK14276 chaperone protein Dna 99.2 2.2E-11 4.7E-16 119.5 7.1 129 49-191 150-350 (380)
61 PRK14297 chaperone protein Dna 99.2 3.9E-11 8.4E-16 117.8 8.3 126 49-188 152-349 (380)
62 PRK14296 chaperone protein Dna 99.2 5.3E-11 1.2E-15 116.4 8.0 130 47-190 151-354 (372)
63 PTZ00037 DnaJ_C chaperone prot 99.1 1.6E-10 3.4E-15 114.6 9.6 120 48-180 153-347 (421)
64 PRK14289 chaperone protein Dna 99.1 7.7E-11 1.7E-15 115.9 7.1 130 42-185 148-352 (386)
65 PRK14291 chaperone protein Dna 99.1 1.8E-10 3.8E-15 113.2 9.2 118 49-181 160-346 (382)
66 PRK14283 chaperone protein Dna 99.1 2.4E-10 5.3E-15 112.1 9.1 128 49-190 150-349 (378)
67 PRK14299 chaperone protein Dna 99.0 1.1E-09 2.4E-14 103.8 7.9 82 168-264 115-196 (291)
68 PLN03165 chaperone protein dna 98.9 4.9E-09 1.1E-13 84.8 6.4 60 63-136 41-100 (111)
69 PRK10266 curved DNA-binding pr 98.8 1.8E-08 3.9E-13 96.2 8.0 75 185-263 115-202 (306)
70 PF01556 CTDII: DnaJ C termina 98.6 5.2E-08 1.1E-12 74.8 4.8 48 138-185 27-76 (81)
71 KOG0714 Molecular chaperone (D 98.5 3.6E-07 7.8E-12 85.1 9.4 105 136-242 198-305 (306)
72 KOG0712 Molecular chaperone (D 98.4 8.7E-07 1.9E-11 84.7 7.4 107 64-181 144-324 (337)
73 TIGR02642 phage_xxxx uncharact 98.3 1E-06 2.2E-11 77.8 6.0 51 106-157 99-149 (186)
74 COG1107 Archaea-specific RecJ- 97.7 2.6E-05 5.6E-10 78.5 2.8 46 227-280 259-308 (715)
75 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.6 1.7E-05 3.6E-10 58.5 0.7 44 61-116 13-66 (66)
76 KOG2813 Predicted molecular ch 97.6 8.4E-05 1.8E-09 69.8 4.8 60 63-143 198-277 (406)
77 TIGR03835 termin_org_DnaJ term 97.6 0.00032 6.9E-09 73.3 9.1 93 181-278 650-763 (871)
78 COG1107 Archaea-specific RecJ- 96.8 0.0014 2.9E-08 66.4 4.4 28 81-120 55-82 (715)
79 PLN03165 chaperone protein dna 96.7 0.0017 3.8E-08 52.7 3.6 49 49-120 45-100 (111)
80 KOG2813 Predicted molecular ch 96.1 0.0036 7.8E-08 59.1 2.3 37 49-90 170-209 (406)
81 TIGR02642 phage_xxxx uncharact 95.7 0.0066 1.4E-07 53.8 2.4 30 80-120 100-129 (186)
82 cd03031 GRX_GRX_like Glutaredo 85.5 0.8 1.7E-05 39.1 3.1 26 108-133 112-144 (147)
83 KOG2824 Glutaredoxin-related p 85.1 0.78 1.7E-05 42.9 3.0 51 64-129 230-280 (281)
84 TIGR00630 uvra excinuclease AB 81.7 1.1 2.4E-05 49.1 3.1 20 258-277 855-875 (924)
85 KOG0715 Molecular chaperone (D 80.5 0.59 1.3E-05 44.4 0.3 63 47-123 166-234 (288)
86 COG0178 UvrA Excinuclease ATPa 79.0 2.2 4.8E-05 45.8 4.0 34 80-117 731-764 (935)
87 KOG2824 Glutaredoxin-related p 73.8 3.5 7.5E-05 38.7 3.4 40 80-135 230-275 (281)
88 cd03031 GRX_GRX_like Glutaredo 71.1 4.3 9.3E-05 34.6 3.1 46 64-118 100-145 (147)
89 PRK00349 uvrA excinuclease ABC 70.6 4 8.7E-05 45.0 3.5 24 251-277 853-877 (943)
90 COG2214 CbpA DnaJ-class molecu 70.2 6.1 0.00013 34.4 4.1 49 141-190 179-227 (237)
91 PRK00635 excinuclease ABC subu 69.6 3.2 6.9E-05 48.6 2.6 25 250-277 1721-1746(1809)
92 PRK14714 DNA polymerase II lar 69.3 5.4 0.00012 44.7 4.1 67 45-132 642-719 (1337)
93 TIGR00340 zpr1_rel ZPR1-relate 66.4 35 0.00076 29.7 7.8 26 205-236 72-97 (163)
94 smart00709 Zpr1 Duplicated dom 65.3 37 0.0008 29.4 7.8 21 138-158 80-100 (160)
95 TIGR00630 uvra excinuclease AB 62.7 3.6 7.9E-05 45.3 1.3 12 81-92 738-749 (924)
96 TIGR00310 ZPR1_znf ZPR1 zinc f 61.5 24 0.00052 31.5 6.1 36 81-116 2-40 (192)
97 PRK04023 DNA polymerase II lar 60.2 5.5 0.00012 43.7 2.0 66 46-134 609-675 (1121)
98 PF12991 DUF3875: Domain of un 57.8 13 0.00027 26.2 2.8 25 248-272 26-52 (54)
99 TIGR00757 RNaseEG ribonuclease 54.1 8.3 0.00018 38.6 2.1 33 88-120 371-404 (414)
100 COG1198 PriA Primosomal protei 51.1 20 0.00044 38.5 4.5 50 63-131 435-484 (730)
101 PF02814 UreE_N: UreE urease a 49.6 35 0.00075 24.6 4.3 32 206-237 30-61 (65)
102 PRK00488 pheS phenylalanyl-tRN 42.0 21 0.00046 34.7 2.7 31 61-102 258-288 (339)
103 PF04246 RseC_MucC: Positive r 41.4 34 0.00074 28.3 3.6 20 138-157 42-61 (135)
104 PRK11712 ribonuclease G; Provi 40.5 14 0.0003 37.8 1.3 32 89-120 384-416 (489)
105 PRK00635 excinuclease ABC subu 40.3 9.6 0.00021 44.8 0.1 16 264-279 1700-1717(1809)
106 PRK00349 uvrA excinuclease ABC 40.0 13 0.00028 41.1 1.1 36 80-119 739-774 (943)
107 PRK00464 nrdR transcriptional 39.7 29 0.00062 29.9 2.9 34 81-114 2-36 (154)
108 COG5216 Uncharacterized conser 39.6 22 0.00049 25.4 1.8 15 42-56 30-44 (67)
109 cd05792 S1_eIF1AD_like S1_eIF1 38.4 1.7E+02 0.0037 22.2 6.6 23 201-223 8-31 (78)
110 PF07092 DUF1356: Protein of u 38.1 17 0.00037 33.5 1.3 14 107-120 39-52 (238)
111 COG2190 NagE Phosphotransferas 37.9 39 0.00084 29.2 3.4 46 207-259 63-111 (156)
112 PRK03564 formate dehydrogenase 37.4 33 0.00072 32.9 3.2 10 63-72 187-196 (309)
113 PRK12380 hydrogenase nickel in 37.2 40 0.00086 27.3 3.2 11 108-118 88-98 (113)
114 PF14205 Cys_rich_KTR: Cystein 37.1 67 0.0015 22.7 3.8 11 125-135 31-41 (55)
115 PRK14559 putative protein seri 35.7 27 0.00058 37.1 2.5 49 64-131 2-50 (645)
116 PF13719 zinc_ribbon_5: zinc-r 35.3 19 0.00041 23.1 0.8 8 81-88 4-11 (37)
117 PLN00208 translation initiatio 35.2 1.7E+02 0.0036 25.0 6.7 58 204-275 44-106 (145)
118 PRK12336 translation initiatio 34.6 1.4E+02 0.0031 26.7 6.7 35 138-172 149-184 (201)
119 COG0178 UvrA Excinuclease ATPa 33.9 22 0.00047 38.6 1.4 36 57-92 723-766 (935)
120 cd02639 R3H_RRM R3H domain of 33.1 58 0.0012 23.4 3.1 22 255-276 17-38 (60)
121 TIGR03655 anti_R_Lar restricti 32.9 56 0.0012 22.5 3.0 12 81-92 3-14 (53)
122 PF07092 DUF1356: Protein of u 32.1 19 0.0004 33.3 0.6 14 80-93 39-52 (238)
123 TIGR00523 eIF-1A eukaryotic/ar 32.0 2.2E+02 0.0049 22.5 6.7 59 204-275 31-94 (99)
124 TIGR00100 hypA hydrogenase nic 31.5 56 0.0012 26.5 3.3 9 108-116 88-96 (115)
125 TIGR00595 priA primosomal prot 30.7 45 0.00097 34.2 3.1 52 63-133 213-264 (505)
126 KOG0005 Ubiquitin-like protein 30.5 20 0.00044 25.8 0.4 20 206-225 2-21 (70)
127 cd05793 S1_IF1A S1_IF1A: Trans 30.1 2.4E+02 0.0052 21.2 6.4 61 201-275 9-74 (77)
128 PF03367 zf-ZPR1: ZPR1 zinc-fi 29.2 58 0.0013 28.2 3.1 34 80-113 2-37 (161)
129 PF03833 PolC_DP2: DNA polymer 28.5 19 0.00041 39.0 0.0 68 47-137 638-707 (900)
130 PF03589 Antiterm: Antitermina 28.5 13 0.00029 29.2 -0.9 12 107-118 33-44 (95)
131 PF08273 Prim_Zn_Ribbon: Zinc- 28.3 37 0.0008 22.4 1.3 13 62-74 2-14 (40)
132 KOG0315 G-protein beta subunit 27.2 45 0.00097 31.3 2.1 32 192-223 18-50 (311)
133 PF08792 A2L_zn_ribbon: A2L zi 27.0 60 0.0013 20.4 2.1 12 80-91 4-15 (33)
134 PRK05580 primosome assembly pr 26.8 53 0.0011 35.0 2.9 63 52-133 365-432 (679)
135 PF08774 VRR_NUC: VRR-NUC doma 26.5 92 0.002 24.1 3.6 27 252-278 62-89 (100)
136 cd04456 S1_IF1A_like S1_IF1A_l 26.3 2.8E+02 0.0062 20.8 6.5 62 201-275 9-75 (78)
137 COG0536 Obg Predicted GTPase [ 26.2 68 0.0015 31.4 3.3 17 165-181 39-55 (369)
138 PF02426 MIase: Muconolactone 26.2 1.1E+02 0.0024 23.9 4.0 23 252-274 3-25 (91)
139 TIGR01562 FdhE formate dehydro 26.2 61 0.0013 31.1 3.0 9 64-72 185-193 (305)
140 TIGR00830 PTBA PTS system, glu 26.1 1.5E+02 0.0033 24.4 4.9 46 205-257 54-102 (121)
141 PTZ00329 eukaryotic translatio 25.9 2.9E+02 0.0063 23.8 6.7 57 205-275 45-106 (155)
142 cd04479 RPA3 RPA3: A subfamily 25.8 3.3E+02 0.0071 21.3 8.0 68 204-278 29-96 (101)
143 PRK14051 negative regulator Gr 25.8 2.4E+02 0.0052 22.8 5.7 70 169-242 48-119 (123)
144 PF10080 DUF2318: Predicted me 25.7 1E+02 0.0023 24.6 3.8 23 107-129 36-59 (102)
145 PF13248 zf-ribbon_3: zinc-rib 24.8 32 0.0007 20.1 0.5 21 107-129 3-23 (26)
146 PF12791 RsgI_N: Anti-sigma fa 24.5 1.8E+02 0.0039 19.9 4.5 35 204-240 5-39 (56)
147 TIGR03221 muco_delta muconolac 24.3 1.2E+02 0.0026 23.7 3.8 21 253-273 3-23 (90)
148 cd00210 PTS_IIA_glc PTS_IIA, P 24.1 1.8E+02 0.0038 24.0 5.0 47 204-257 53-102 (124)
149 PF02963 EcoRI: Restriction en 23.8 39 0.00084 30.6 1.1 37 206-243 162-198 (257)
150 PRK14873 primosome assembly pr 23.7 54 0.0012 34.9 2.3 60 52-132 368-432 (665)
151 PF12387 Peptidase_C74: Pestiv 23.0 47 0.001 29.1 1.4 25 63-90 162-186 (200)
152 PLN02226 2-oxoglutarate dehydr 22.7 3.5E+02 0.0075 27.6 7.7 69 140-236 92-165 (463)
153 PF01333 Apocytochr_F_C: Apocy 22.5 61 0.0013 26.5 1.8 56 204-262 23-82 (118)
154 PF01155 HypA: Hydrogenase exp 22.4 54 0.0012 26.5 1.6 25 107-131 71-95 (113)
155 PRK12380 hydrogenase nickel in 22.4 1.1E+02 0.0023 24.8 3.3 28 106-133 70-97 (113)
156 PRK05580 primosome assembly pr 22.1 65 0.0014 34.4 2.5 40 63-116 390-431 (679)
157 PRK14875 acetoin dehydrogenase 22.0 3.4E+02 0.0073 25.5 7.3 68 141-236 4-76 (371)
158 TIGR00595 priA primosomal prot 21.8 67 0.0014 33.0 2.5 43 62-118 221-265 (505)
159 PRK09439 PTS system glucose-sp 21.8 1.5E+02 0.0033 25.8 4.4 47 205-258 76-125 (169)
160 PRK00564 hypA hydrogenase nick 21.6 1.3E+02 0.0029 24.4 3.8 8 63-70 71-78 (117)
161 COG1530 CafA Ribonucleases G a 21.1 1E+02 0.0022 31.6 3.6 27 94-120 383-409 (487)
162 PF13717 zinc_ribbon_4: zinc-r 21.1 57 0.0012 20.7 1.2 7 81-87 4-10 (36)
163 PF14354 Lar_restr_allev: Rest 21.0 1E+02 0.0022 21.5 2.7 15 80-95 4-18 (61)
164 PRK02935 hypothetical protein; 21.0 47 0.001 26.7 0.9 25 105-129 69-93 (110)
165 COG2214 CbpA DnaJ-class molecu 21.0 2.6E+02 0.0056 23.8 5.9 70 189-263 150-219 (237)
166 COG2371 UreE Urease accessory 21.0 1.8E+02 0.004 25.0 4.6 32 206-237 35-66 (155)
167 PF07191 zinc-ribbons_6: zinc- 21.0 47 0.001 24.7 0.9 39 65-117 3-41 (70)
168 KOG0690 Serine/threonine prote 21.0 25 0.00055 34.3 -0.7 30 251-280 378-407 (516)
169 PRK13263 ureE urease accessory 20.8 2.1E+02 0.0046 25.9 5.2 43 194-237 25-67 (206)
170 TIGR00100 hypA hydrogenase nic 20.4 1.3E+02 0.0029 24.3 3.5 27 106-132 70-96 (115)
171 PRK14113 urease accessory prot 20.2 2.1E+02 0.0045 24.5 4.8 43 194-237 19-61 (152)
172 COG1198 PriA Primosomal protei 20.2 56 0.0012 35.2 1.6 38 64-115 445-484 (730)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=9.3e-77 Score=583.40 Aligned_cols=318 Identities=45% Similarity=0.850 Sum_probs=284.4
Q ss_pred CCChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCC
Q 019801 7 AHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQ 86 (335)
Q Consensus 7 ~~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 86 (335)
+.++.|+|+.|||++ + ++.+++++.|+.+.|.|||+|+|+|++++|.+.+.+.|+.|+|+|.+.+...+|+.|+
T Consensus 100 ~~d~~d~f~~~Fggg----~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 173 (421)
T PTZ00037 100 PADASDLFDLIFGGG----R--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCN 173 (421)
T ss_pred CcchhhhHHHhhccc----c--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCC
Confidence 356889999999852 1 1233567999999999999999999999999999999999999998777668999999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCC
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 166 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~ 166 (335)
|+|.++.++++|| |++|++.+|+.|+|+|+++..+++|+.|+|.+++.+.++|+|+|||||.+|++|+|+|+|++.+++
T Consensus 174 G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~ 252 (421)
T PTZ00037 174 GQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNE 252 (421)
T ss_pred CCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCC
Confidence 9999999999999 889999999999999999988899999999999999999999999999999999999999998888
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.||||||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|++|||++++||++++|+|+|||..+++
T Consensus 253 ~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~ 332 (421)
T PTZ00037 253 IPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSP 332 (421)
T ss_pred CCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999987655
Q ss_pred CCCCcEEEEEEEECC--CCCCHHHHHHHHHHCCCCCCCCCCCCCcccceeeeeecCChhHHHHHhhhcccccccccCC--
Q 019801 247 FMKGKLYIHFTVEFP--DSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDED-- 322 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P--~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 322 (335)
+.+|||||+|+|.|| +.||++|+++|++|||.++.... +++.+++|+++++++|+++...+ .++|+|+||+|
T Consensus 333 ~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 408 (421)
T PTZ00037 333 FKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDEDDE 408 (421)
T ss_pred CCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccccccc
Confidence 678999999999999 88999999999999987654443 45668899999999999875443 23455544433
Q ss_pred CCCCCCCCCCcCC
Q 019801 323 MPGGAQRVQCAQQ 335 (335)
Q Consensus 323 ~~~~~~~~~C~~q 335 (335)
+++++++||||||
T Consensus 409 ~~~~~~~v~c~~q 421 (421)
T PTZ00037 409 HHQEGERVACRQQ 421 (421)
T ss_pred cCCCCCccccCCC
Confidence 2346799999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-67 Score=497.93 Aligned_cols=260 Identities=35% Similarity=0.667 Sum_probs=239.9
Q ss_pred ChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCC-cccCCCCCc
Q 019801 9 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA-SMKCSGCQG 87 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G 87 (335)
++.|||++||||+++ ++++++++++|.|+.+.|+|||+|+|+|++++|.+++...|++|+|+|+++++ ..+|++|+|
T Consensus 90 ~~~DIF~~~FgGg~~--~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G 167 (371)
T COG0484 90 DFGDIFEDFFGGGGG--GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNG 167 (371)
T ss_pred CHHHHHHHhhcCCCc--ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCC
Confidence 689999999985322 22334567899999999999999999999999999999999999999999995 489999999
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~ 166 (335)
+|.+...+++ ++++++++|+.|+|+|++|+ ++|+.|+|.+++.+.++|+|+||+|+.+|++|++.|+|++.+ ++
T Consensus 168 ~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Gg 242 (371)
T COG0484 168 SGQVRTVQRT---GFFSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGG 242 (371)
T ss_pred cCeEEEEEee---eEEEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCC
Confidence 9999988888 35678999999999999995 999999999999999999999999999999999999999976 67
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
++|||||+|.|++|+.|+|+|+|||++++||+.+|+||+++.|+||||+ ++|+|||| +++|++++|+|+|||..+ .
T Consensus 243 p~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~~~-~ 318 (371)
T COG0484 243 PAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPKLR-S 318 (371)
T ss_pred CCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccccC-C
Confidence 8899999999999999999999999999999999999999999999999 89999999 688999999999999864 4
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPSR 279 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~ 279 (335)
..+|||||+++|++|++||.+|+++|++|....
T Consensus 319 ~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 319 GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 567999999999999999999999999998754
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-63 Score=482.30 Aligned_cols=259 Identities=27% Similarity=0.512 Sum_probs=236.9
Q ss_pred ChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCc
Q 019801 9 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|+|++|||++ + ++.+++++++|+.+.|.|||+|+|+|++++|.+.+.+.|++|+|+|.+.+.. .+|+.|+|
T Consensus 100 ~f~d~f~~~fggg----~-~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G 174 (372)
T PRK14296 100 SFTNIFSDFFGSN----K-SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHG 174 (372)
T ss_pred cchhhhhhhcCCC----c-cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCC
Confidence 4568899998742 1 1223456899999999999999999999999999999999999999987764 78999999
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCC-CCC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~-~~~ 166 (335)
+|.++..+++|| |++|++.+|+.|+|+|+++. +.|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++. +++
T Consensus 175 ~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 251 (372)
T PRK14296 175 TGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNG 251 (372)
T ss_pred CceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCC
Confidence 999999999999 66688999999999999986 88999999999999999999999999999999999999986 477
Q ss_pred CcccEEEEEEEecCCccccc-cccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRK-GEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~-g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
.+|||||+|++++|+.|+|+ |+|||++++|||+|||+|+++.|+||||+ +.|+||++ ++||++++|+|+|||...+
T Consensus 252 ~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~~ri~GkGmP~~~~ 328 (372)
T PRK14296 252 VNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNELIIINNKGLYKSIN 328 (372)
T ss_pred CCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcEEEEcCCCCCcCCC
Confidence 89999999999999999996 89999999999999999999999999998 89999987 8999999999999996655
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
++.+|||||+|+|+||++||++|+++|++|+..
T Consensus 329 ~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 329 KDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred CCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999999999999864
No 4
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-61 Score=467.58 Aligned_cols=263 Identities=25% Similarity=0.542 Sum_probs=237.5
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCC
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
.++.|+|++|||+++ ++.+...+++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|.+.+.. .+|+.|+
T Consensus 86 ~~~~d~f~~ffgg~g--~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~ 163 (378)
T PRK14278 86 GGLGDVFEAFFGGGA--ASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCG 163 (378)
T ss_pred CchhHHHHHHhCCCC--CCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCcc
Confidence 356799999998521 1111112356899999999999999999999999999999999999999988764 7899999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCC-
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPD- 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~- 165 (335)
|+|.+...+++++|++++ +++|+.|+|+|+++. ++|+.|+|++++.+.++++|.||||+++|++|+|+|+|++.++
T Consensus 164 G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~ 240 (378)
T PRK14278 164 GRGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGG 240 (378)
T ss_pred CceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCC
Confidence 999999999999998865 669999999999986 8899999999999999999999999999999999999998774
Q ss_pred CCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 166 TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 166 ~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+|||++.+.|+||++ +++|++++|+|+|||..+
T Consensus 241 ~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~~~- 317 (378)
T PRK14278 241 GPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPHLR- 317 (378)
T ss_pred CCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCCCC-
Confidence 56799999999999999999999999999999999999999999999777899999998 899999999999999764
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
...+|||||+|+|.||++||++|+++|+++++.
T Consensus 318 ~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 318 SGGRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350 (378)
T ss_pred CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999999999999964
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-60 Score=465.32 Aligned_cols=260 Identities=31% Similarity=0.563 Sum_probs=236.0
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCC
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
.++.|+|++|||+++ +++.++++++.|+.+.|.|||||+|+|+++++.+.+.+.|++|+|+|.+.++. .+|+.|+
T Consensus 90 ~~~~d~f~~~Fgg~~----~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 165 (377)
T PRK14298 90 GGFGDIFEMFFGGGG----RRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCG 165 (377)
T ss_pred CcchhhhHhhhcCCC----ccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCC
Confidence 356799999998521 11123457899999999999999999999999999999999999999988765 7899999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCC-CC
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA-PD 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~-~~ 165 (335)
|+|.++..+++++ +++|++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|+||||+++|++|+|+|+|++. ++
T Consensus 166 G~G~~~~~~~~~~-g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~ 242 (377)
T PRK14298 166 GTGQVTTTRSTPL-GQFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPG 242 (377)
T ss_pred CccEEEEEEecCc-eeEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCC
Confidence 9999998888654 45688999999999999986 88999999999999999999999999999999999999985 57
Q ss_pred CCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 166 TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 166 ~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 243 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~~~- 318 (377)
T PRK14298 243 APSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPRLH- 318 (377)
T ss_pred CCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCCCC-
Confidence 78999999999999999999999999999999999999999999999998 78999998 799999999999999764
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
...+|||||+|+|.||+.|+++++++|++++..
T Consensus 319 ~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~ 351 (377)
T PRK14298 319 GHGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351 (377)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999999999999863
No 6
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-60 Score=465.65 Aligned_cols=262 Identities=27% Similarity=0.555 Sum_probs=236.5
Q ss_pred ChhhHhhhhcCCCCCCCCCC-CCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCC
Q 019801 9 DPFDIFSSFFGGSPFGGGSS-RGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~-~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
++.|+|++||++. |++++. +..++++++|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.. .+|+.|+
T Consensus 101 ~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 179 (386)
T PRK14277 101 GFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCH 179 (386)
T ss_pred chhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCC
Confidence 3568899999742 322211 123356899999999999999999999999999999999999999987654 7899999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-C
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~ 165 (335)
|+|.++..++++||++++. .+|+.|+|+|+++. ++|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++.+ +
T Consensus 180 G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 256 (386)
T PRK14277 180 GTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKG 256 (386)
T ss_pred CEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCC
Confidence 9999999999999998765 69999999999986 889999999999999999999999999999999999999854 5
Q ss_pred CCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 166 TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 166 ~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..++
T Consensus 257 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~ri~g~G~p~~~~ 333 (386)
T PRK14277 257 GPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTKFRLRGKGIPHLRG 333 (386)
T ss_pred CCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCEEEECCCCCCCCCC
Confidence 67899999999999999999999999999999999999999999999998 89999998 7999999999999997643
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
..+|||||+|+|.||++|+++|+++|++|+..
T Consensus 334 -~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~ 365 (386)
T PRK14277 334 -RGRGDQIVKVYIEVPKKLTEKQKELLREFEKL 365 (386)
T ss_pred -CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999853
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-60 Score=464.71 Aligned_cols=261 Identities=26% Similarity=0.523 Sum_probs=237.3
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCC
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
.++.|||++|||+++ +.+...+++++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|...+.. .+|+.|+
T Consensus 94 ~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~ 170 (380)
T PRK14276 94 GGFEDIFSSFFGGGG---ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCH 170 (380)
T ss_pred cchhhHHHHHhCccc---cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCC
Confidence 356799999998521 111123456899999999999999999999999999999999999999987764 7899999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-C
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~ 165 (335)
|+|.+...++++|||+++ +.+|+.|+|+|+++. +.|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++.+ +
T Consensus 171 G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~ 247 (380)
T PRK14276 171 GSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNG 247 (380)
T ss_pred CeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCC
Confidence 999999999999999876 779999999999986 889999999999999999999999999999999999999875 4
Q ss_pred CCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 166 TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 166 ~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 248 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~- 323 (380)
T PRK14276 248 GPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGKGAPKLR- 323 (380)
T ss_pred CCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCCCcCCCC-
Confidence 56799999999999999999999999999999999999999999999998 79999998 799999999999999764
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
...+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 324 ~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 324 GGGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA 356 (380)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999999999999999953
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-60 Score=461.32 Aligned_cols=261 Identities=25% Similarity=0.523 Sum_probs=237.2
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCC
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
.++.|+|++|||+++ +.+..++++++.|+.+.|.|||+|+|+|++++|.+.+.+.|+.|+|+|...+.. .+|+.|+
T Consensus 86 ~~~~d~f~~~fgg~~---~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 162 (371)
T PRK14287 86 GGFSDIFDMFFGGGG---GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCG 162 (371)
T ss_pred cchHHHHHhhhcccc---CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCC
Confidence 346799999998521 111123356899999999999999999999999999999999999999987764 7899999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-C
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~ 165 (335)
|+|.+...++++|||+++ +.+|+.|.|+|+++. +.|..|+|.+++.+.++++|.||+|+++|++|+|+|+|++.+ +
T Consensus 163 G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~ 239 (371)
T PRK14287 163 GSGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNG 239 (371)
T ss_pred CEEEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCC
Confidence 999999999999999876 779999999999986 889999999999999999999999999999999999999864 5
Q ss_pred CCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 166 TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 166 ~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..++
T Consensus 240 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~~ 316 (371)
T PRK14287 240 GPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPNVHG 316 (371)
T ss_pred CCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccCCCC
Confidence 67899999999999999999999999999999999999999999999998 79999998 7999999999999997643
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
..+|||||+|+|.||+.|+.+|+++|++|+..
T Consensus 317 -~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 317 -RGQGDQHVQVRVVTPKNLTEKEKELMREFAGM 348 (371)
T ss_pred -CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999999999999954
No 9
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-60 Score=462.81 Aligned_cols=255 Identities=24% Similarity=0.501 Sum_probs=227.5
Q ss_pred hhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccE
Q 019801 11 FDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGM 90 (335)
Q Consensus 11 ~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 90 (335)
.++|+.|||+++ .+++.+++++++|+.+.|.|||+|+|+|++++|.+.+.+.|+.|+|+|.......+|+.|+|+|.
T Consensus 91 ~~~F~~~fg~g~---~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 167 (369)
T PRK14288 91 GSFFEDAFGFGA---RGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQ 167 (369)
T ss_pred HHHHHhhcCCCC---cccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcE
Confidence 345666665311 11112345689999999999999999999999999999999999999998876689999999998
Q ss_pred EEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCCCccc
Q 019801 91 KVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGD 170 (335)
Q Consensus 91 ~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GD 170 (335)
+...+ |++ +++.+|+.|.|+|+++. +.|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.+++.+||
T Consensus 168 ~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GD 240 (369)
T PRK14288 168 VFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGD 240 (369)
T ss_pred EEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCC
Confidence 76543 455 55679999999999986 889999999999999999999999999999999999999988888999
Q ss_pred EEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCC
Q 019801 171 IVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKG 250 (335)
Q Consensus 171 L~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~G 250 (335)
|||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..+ +..+|
T Consensus 241 L~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p~~~-~~~~G 317 (369)
T PRK14288 241 LYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVKHPE-SSYRG 317 (369)
T ss_pred EEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCCCCC-CCCCC
Confidence 999999999999999999999999999999999999999999999889999997 899999999999999764 34589
Q ss_pred cEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 251 KLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 251 dL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
||||+|+|+||++|+++|+++|++|++.
T Consensus 318 DL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 318 SLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999974
No 10
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-60 Score=462.07 Aligned_cols=260 Identities=28% Similarity=0.572 Sum_probs=236.4
Q ss_pred ChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCc
Q 019801 9 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|+|++|||+++ +++..++++++.|+.+.|.|||||+|+|++++|.+.+.+.|+.|+|+|...+.. .+|+.|+|
T Consensus 92 ~~~d~f~~~fgg~~---~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 168 (376)
T PRK14280 92 GFEDIFSSFFGGGG---RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGG 168 (376)
T ss_pred cchhhHHHHhCCcc---ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCC
Confidence 56799999997521 111123356899999999999999999999999999999999999999987764 78999999
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~ 166 (335)
+|.+...++++|||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++.+ +.
T Consensus 169 ~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~ 245 (376)
T PRK14280 169 SGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGG 245 (376)
T ss_pred EEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCC
Confidence 9999999999999987 4779999999999986 889999999999999999999999999999999999999865 46
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+|||+++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ .
T Consensus 246 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~-~ 321 (376)
T PRK14280 246 PAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVPNVR-G 321 (376)
T ss_pred CCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCCCCC-C
Confidence 7899999999999999999999999999999999999999999999997 79999998 899999999999999763 3
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
..+|||||+|+|.||++||++|+++|++|+..
T Consensus 322 ~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~ 353 (376)
T PRK14280 322 YGQGDQYVVVRVVTPTKLTDRQKELLREFAEL 353 (376)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999853
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.2e-60 Score=460.21 Aligned_cols=260 Identities=29% Similarity=0.608 Sum_probs=232.0
Q ss_pred ChhhHhhhhcCCCCCCC-CCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCC
Q 019801 9 DPFDIFSSFFGGSPFGG-GSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~gg-g~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
++.|||++|||+++.++ ++++..++++++|+.+.|.|||||+|+|++++|.+.+.+.|++|+|+|.+.+.. .+|+.|+
T Consensus 95 ~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 174 (372)
T PRK14286 95 DFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCG 174 (372)
T ss_pred chhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCc
Confidence 56799999998532110 011123356899999999999999999999999999999999999999987764 7899999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-C
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~ 165 (335)
|+|.++..+ ||+ |++++|+.|+|+|+++. ++|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++.+ +
T Consensus 175 G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 247 (372)
T PRK14286 175 GSGQIRRTQ----GFF-SVATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNG 247 (372)
T ss_pred CeEEEEEEe----ceE-EEEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCC
Confidence 999876543 566 47889999999999986 889999999999999999999999999999999999999876 4
Q ss_pred CCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 166 TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 166 ~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.|.|+||++ +++|++++|+|+|||..+
T Consensus 248 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G~G~P~~~- 324 (372)
T PRK14286 248 GPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKGHGMPYLG- 324 (372)
T ss_pred CCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECCCCCCCCC-
Confidence 56799999999999999999999999999999999999999999999999899999998 899999999999999764
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
...+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 325 ~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 357 (372)
T PRK14286 325 AYGKGDQHVIVKIEIPKKITRRQRELIEEFARE 357 (372)
T ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999999964
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-59 Score=459.36 Aligned_cols=263 Identities=29% Similarity=0.600 Sum_probs=237.5
Q ss_pred ChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCc
Q 019801 9 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||++ |++.+++..++++++|+++.|.|||||+|+|++++|.+.+.+.|+.|+|+|...+.. .+|+.|+|
T Consensus 95 ~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 173 (380)
T PRK14297 95 GFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGG 173 (380)
T ss_pred chhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccC
Confidence 4669999999852 211111223356899999999999999999999999999999999999999987764 78999999
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~ 166 (335)
+|.+...++++||+++ ++.+|+.|+|+|.++. +.|..|+|.+++.+.++++|+||+|+++|++|+|.|+|++.+ +.
T Consensus 174 ~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~ 250 (380)
T PRK14297 174 TGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGG 250 (380)
T ss_pred eEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCC
Confidence 9999999999999765 4889999999999986 889999999999999999999999999999999999999865 56
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ .
T Consensus 251 ~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~G~p~~~-~ 326 (380)
T PRK14297 251 PTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGKGVPRVN-S 326 (380)
T ss_pred CCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCCCcCCCC-C
Confidence 7899999999999999999999999999999999999999999999997 79999998 899999999999999763 4
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPSR 279 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~ 279 (335)
..+|||||+|+|.||++|+++|+++|+++++..
T Consensus 327 ~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 327 TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999743
No 13
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-59 Score=459.27 Aligned_cols=238 Identities=28% Similarity=0.579 Sum_probs=224.7
Q ss_pred CCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCC
Q 019801 34 RRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECK 113 (335)
Q Consensus 34 ~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~ 113 (335)
+++.|+.+.|.|||||+|+|++++|.+++.+.|+.|+|+|...+...+|+.|+|+|.+...+++++|++++ +.+|+.|.
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~ 212 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCG 212 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCc
Confidence 57899999999999999999999999999999999999999887668999999999999999999998875 67999999
Q ss_pred ceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCcccccccccee
Q 019801 114 GTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFY 192 (335)
Q Consensus 114 G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL~~ 192 (335)
|+|+++. ++|+.|+|++++.+.++++|+||+|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++
T Consensus 213 G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~ 290 (397)
T PRK14281 213 GEGRVVK--DRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIY 290 (397)
T ss_pred ceeeeeC--CCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEE
Confidence 9999986 889999999999999999999999999999999999999876 5689999999999999999999999999
Q ss_pred cccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Q 019801 193 EHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKAL 272 (335)
Q Consensus 193 ~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l 272 (335)
+++|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ ...+|||||+|+|.||++||++|+++|
T Consensus 291 ~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l 366 (397)
T PRK14281 291 NLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG--TQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELL 366 (397)
T ss_pred EEEecHHHHhcCCeEEeecCCcc-EEEEeCCc--cCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 99999999999999999999998 89999998 899999999999999764 346899999999999999999999999
Q ss_pred HHHCCC
Q 019801 273 EAILPS 278 (335)
Q Consensus 273 ~~~l~~ 278 (335)
++|+..
T Consensus 367 ~~l~~~ 372 (397)
T PRK14281 367 KELKKS 372 (397)
T ss_pred HHHHhh
Confidence 999963
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-59 Score=454.10 Aligned_cols=259 Identities=31% Similarity=0.632 Sum_probs=233.3
Q ss_pred ChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCc
Q 019801 9 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
+|.|||++|||+++ ++.+.++++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.. .+|+.|+|
T Consensus 95 ~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 171 (365)
T PRK14285 95 DFGDIFDSFFTGNR---GQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNG 171 (365)
T ss_pred cHHHHHHHhhcCCc---CCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccC
Confidence 46799999998521 111122356899999999999999999999999999999999999999987764 78999999
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCC-C
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPD-T 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~-~ 166 (335)
+|.++. ++||+ |++.+|+.|.|+|+++. +.|..|+|++++.+.++++|+||||+++|++|+|+|+|++.++ .
T Consensus 172 ~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 244 (365)
T PRK14285 172 SGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQ 244 (365)
T ss_pred ceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCC
Confidence 998763 57787 77999999999999986 8899999999999999999999999999999999999998764 5
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+|||++++|||.|||+|+++.|+||||+.|.|+||++ +++|++++|+|+|||..+ .
T Consensus 245 ~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~GkG~p~~~-~ 321 (365)
T PRK14285 245 QYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKNEGMPILH-T 321 (365)
T ss_pred CCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECCCCccCCC-C
Confidence 6899999999999999999999999999999999999999999999999899999998 899999999999999764 3
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRP 280 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~~ 280 (335)
..+|||||+|+|.+|+.|+++++++|++|+...+
T Consensus 322 ~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 322 EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999986543
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-59 Score=452.61 Aligned_cols=259 Identities=26% Similarity=0.548 Sum_probs=235.5
Q ss_pred hHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcccE
Q 019801 12 DIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGTGM 90 (335)
Q Consensus 12 d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~ 90 (335)
|+|++|||+++ +++++..++++++|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|++.+.. .+|+.|+|+|.
T Consensus 103 d~f~~~fgg~~--~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 180 (369)
T PRK14282 103 DIFDIFFGERR--TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGR 180 (369)
T ss_pred hhhhHhhcccC--CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCE
Confidence 78899997421 1111123456899999999999999999999999999999999999999987764 78999999999
Q ss_pred EEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcc
Q 019801 91 KVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTG 169 (335)
Q Consensus 91 ~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~G 169 (335)
++..++++|||+++ +.+|+.|+|+|+++. +.|+.|+|++++.+.++|+|+||||+.+|++|+|+|+|++.+ +..+|
T Consensus 181 ~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~G 257 (369)
T PRK14282 181 IREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYG 257 (369)
T ss_pred EEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCC
Confidence 99999999999765 679999999999986 889999999999999999999999999999999999999854 56789
Q ss_pred cEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCC
Q 019801 170 DIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 249 (335)
Q Consensus 170 DL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~ 249 (335)
||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|++++|+|+|||..+ ...+
T Consensus 258 Dl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~iri~GkG~p~~~-~~~~ 334 (369)
T PRK14282 258 DLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVFRLKGKGLPNMR-YGRR 334 (369)
T ss_pred CEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEEEECCCCCCCCC-CCCC
Confidence 9999999999999999999999999999999999999999999999899999998 899999999999999753 3468
Q ss_pred CcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 250 GKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 250 GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
|||||+|+|.+|+.|+.+++++|++|+..
T Consensus 335 GDL~V~~~v~~P~~l~~~~~~ll~~l~~~ 363 (369)
T PRK14282 335 GDLIVNVHVEIPKRLSREERKLLKELAKK 363 (369)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999864
No 16
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=6.4e-59 Score=450.72 Aligned_cols=262 Identities=32% Similarity=0.618 Sum_probs=237.2
Q ss_pred ChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCC-cccCCCCCc
Q 019801 9 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA-SMKCSGCQG 87 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G 87 (335)
++.|+|++|||++. +++.++..++++++|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...+. ..+|+.|+|
T Consensus 90 ~~~~~f~~~fg~~~-g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 168 (354)
T TIGR02349 90 DFGDIFGDFFGGGG-GSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGG 168 (354)
T ss_pred chhhhHHHHhccCc-ccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCC
Confidence 46789999998531 1111112345689999999999999999999999999999999999999998776 478999999
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~ 166 (335)
+|.++..++++|||+++ +.+|+.|.|+|+++. +.|+.|+|++++.+.++++|+||+|+++|++|+|+|+|++.+ +.
T Consensus 169 ~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 245 (354)
T TIGR02349 169 TGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGG 245 (354)
T ss_pred eeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCC
Confidence 99999999999999987 679999999999986 789999999999999999999999999999999999999854 56
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.||++ +++|++++|+|+|||..+ .
T Consensus 246 ~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~p~~~-~ 321 (354)
T TIGR02349 246 PNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKGKGVPRLR-G 321 (354)
T ss_pred CCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECCCCcCCCC-C
Confidence 789999999999999999999999999999999999999999999999 589999998 899999999999999764 3
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
..+|||||+|+|.||+.|+++|+++|++||+.
T Consensus 322 ~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 322 NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 36899999999999999999999999999853
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.2e-59 Score=454.79 Aligned_cols=235 Identities=28% Similarity=0.558 Sum_probs=217.7
Q ss_pred CCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcccEEEEEEecCCccceeceecCC
Q 019801 32 RQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCN 110 (335)
Q Consensus 32 ~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~ 110 (335)
++++++|+.+.|.|||||+|+|+++++.+.+.+.|++|+|+|...++. .+|+.|+|+|.++..+ | ++ +++++|+
T Consensus 142 ~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~ 216 (392)
T PRK14279 142 RPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--G--AF-GFSEPCT 216 (392)
T ss_pred CCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--c--ce-EEEEecC
Confidence 456899999999999999999999999999999999999999988754 7899999999887553 3 34 5679999
Q ss_pred CCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCcccccccc
Q 019801 111 ECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGED 189 (335)
Q Consensus 111 ~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~d 189 (335)
.|+|+|+++. +.|..|+|.+++.+.++++|.||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+|
T Consensus 217 ~C~G~G~~i~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~D 294 (392)
T PRK14279 217 DCRGTGSIIE--DPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDD 294 (392)
T ss_pred CCCceeEEeC--CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCc
Confidence 9999999986 889999999999999999999999999999999999999876 4567999999999999999999999
Q ss_pred ceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHH
Q 019801 190 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQV 269 (335)
Q Consensus 190 L~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~ 269 (335)
|++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||.. ...+|||||+|+|.||++|+++|+
T Consensus 295 L~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~Ip~g--~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~ 369 (392)
T PRK14279 295 LTVTVPVSFTELALGSTLSVPTLDGP-VGVKVPAG--TADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAA 369 (392)
T ss_pred EEEEEEccHHHHcCCceEEEEcCCce-EEEEECCC--CCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHH
Confidence 99999999999999999999999998 89999998 89999999999999963 346899999999999999999999
Q ss_pred HHHHHHCCC
Q 019801 270 KALEAILPS 278 (335)
Q Consensus 270 ~~l~~~l~~ 278 (335)
++|++|+..
T Consensus 370 ~~l~~~~~~ 378 (392)
T PRK14279 370 EALEAYAEA 378 (392)
T ss_pred HHHHHHHhh
Confidence 999999963
No 18
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-58 Score=453.71 Aligned_cols=258 Identities=26% Similarity=0.521 Sum_probs=228.7
Q ss_pred hhHhhhhcCCCCCC-CCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcc
Q 019801 11 FDIFSSFFGGSPFG-GGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGT 88 (335)
Q Consensus 11 ~d~F~~fFgg~~~g-gg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~ 88 (335)
.|+|++|||+++++ +++....+++++.|+.+.|.|||||+|+|+++++.+.+.+.|++|+|+|++.+.. .+|+.|+|+
T Consensus 105 ~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 184 (391)
T PRK14284 105 GSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGS 184 (391)
T ss_pred ccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCe
Confidence 47888888752210 1111123356899999999999999999999999999999999999999987764 789999999
Q ss_pred cEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCC
Q 019801 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTV 167 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~ 167 (335)
|.++..+ |++ +++.+|+.|+|+|+++. +.|+.|+|.+++.+.++|+|+||||+++|++|+|+|+|++.+ ++.
T Consensus 185 G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 257 (391)
T PRK14284 185 GQVVQSR----GFF-SMASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAP 257 (391)
T ss_pred eEEEEEe----ceE-EEEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCC
Confidence 9877543 454 47789999999999986 889999999999999999999999999999999999999976 567
Q ss_pred cccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCC-CCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 168 TGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLD-GRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 168 ~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tld-G~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||| |+.+.|+||++ +++|++++|+|+|||..+ .
T Consensus 258 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g--~~~g~~~~i~g~G~p~~~-~ 334 (391)
T PRK14284 258 AGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG--IQSGTILKVRGQGFPNVH-G 334 (391)
T ss_pred CCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc--cCCCeEEEECCCCCCCCC-C
Confidence 8999999999999999999999999999999999999999999999 67799999998 899999999999999764 3
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
..+|||||+|+|.+|+.|+++|+++|++|+..
T Consensus 335 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 366 (391)
T PRK14284 335 KGRGDLLVRISVETPQNLSEEQKELLRQFAAT 366 (391)
T ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999853
No 19
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-59 Score=437.59 Aligned_cols=255 Identities=58% Similarity=1.023 Sum_probs=242.4
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEE
Q 019801 14 FSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVS 93 (335)
Q Consensus 14 F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 93 (335)
|++||+.++ . +++++.|++|++|.|+|||||+|.|.++++.++++.+|+.|+|+|.++++..+|+.|.|+|..+.
T Consensus 83 f~~~F~~g~---~--~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~ 157 (337)
T KOG0712|consen 83 FSQFFGFGG---N--GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTR 157 (337)
T ss_pred HHHhccCCC---c--CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeE
Confidence 899998321 1 12334459999999999999999999999999999999999999999998889999999999999
Q ss_pred EEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCCCcccEEE
Q 019801 94 IRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVF 173 (335)
Q Consensus 94 ~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v 173 (335)
++++||||+|+++.+|..|+|+|.++..+++|+.|.|.+++.+.+.++|+|++|++++++|++.|++++.++..|||++|
T Consensus 158 ~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl 237 (337)
T KOG0712|consen 158 TRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVL 237 (337)
T ss_pred EEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEE
Q 019801 174 VLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLY 253 (335)
Q Consensus 174 ~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~ 253 (335)
.|..++|+.|.|+++||++..+|+|.|||+|+.+.+.||||+.|.|+++||+|++||++++|+|+|||+++++ +||||
T Consensus 238 ~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~ly 315 (337)
T KOG0712|consen 238 LIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLY 315 (337)
T ss_pred EecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC--CCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877 99999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHC
Q 019801 254 IHFTVEFPDSLTPDQVKALEAIL 276 (335)
Q Consensus 254 i~~~V~~P~~l~~~~~~~l~~~l 276 (335)
|+|.|+||+ ++++++.+|+++|
T Consensus 316 i~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 316 IKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred EEEEEEcCC-CChHHHHHHHhhC
Confidence 999999999 9999999999876
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.3e-58 Score=446.55 Aligned_cols=236 Identities=28% Similarity=0.539 Sum_probs=218.7
Q ss_pred CCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcccEEEEEEecCCccceeceecCC
Q 019801 32 RQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCN 110 (335)
Q Consensus 32 ~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~ 110 (335)
++++++|+.+.|.|||||+|+|++++|.+.+.+.|++|+|+|.+.+.. .+|+.|+|+|.++..+ | ++ +++.+|+
T Consensus 135 ~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~ 209 (389)
T PRK14295 135 QPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GF-SLSEPCP 209 (389)
T ss_pred CCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ce-EEEEecC
Confidence 456899999999999999999999999999999999999999998764 7899999999887654 3 33 4678999
Q ss_pred CCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCcccccccc
Q 019801 111 ECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGED 189 (335)
Q Consensus 111 ~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~d 189 (335)
.|+|+|+++. +.|..|+|++++.+.++++|.||+|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+|
T Consensus 210 ~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~D 287 (389)
T PRK14295 210 DCKGRGLIAD--DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDN 287 (389)
T ss_pred CCcceeEEec--cCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCC
Confidence 9999999986 889999999999999999999999999999999999999854 5678999999999999999999999
Q ss_pred ceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHH
Q 019801 190 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQV 269 (335)
Q Consensus 190 L~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~ 269 (335)
|+++++|||.+||+|+++.|+||||+.+.|+||++ +++|++++|+|+|||.. ...+|||||+|+|.||++|+++|+
T Consensus 288 L~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g--~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk 363 (389)
T PRK14295 288 LTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG--TPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAR 363 (389)
T ss_pred EEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc--cCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHH
Confidence 99999999999999999999999999899999998 89999999999999964 346899999999999999999999
Q ss_pred HHHHHHCCC
Q 019801 270 KALEAILPS 278 (335)
Q Consensus 270 ~~l~~~l~~ 278 (335)
++|++|+..
T Consensus 364 ~~l~~l~~~ 372 (389)
T PRK14295 364 EALEAFREA 372 (389)
T ss_pred HHHHHHHhh
Confidence 999999863
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.6e-58 Score=445.60 Aligned_cols=256 Identities=29% Similarity=0.555 Sum_probs=228.5
Q ss_pred hhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcc
Q 019801 10 PFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGT 88 (335)
Q Consensus 10 ~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~ 88 (335)
+.|+|++|||+++. ++++.++++++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|...+.. .+|+.|+|+
T Consensus 93 f~d~f~~~fg~g~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 170 (373)
T PRK14301 93 FSDIFGDLFGFSGG--GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGS 170 (373)
T ss_pred hHHHHHHHhhccCc--ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCe
Confidence 45888888873211 111223456899999999999999999999999999999999999999987764 789999999
Q ss_pred cEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCC
Q 019801 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTV 167 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~ 167 (335)
|.+... + ||+ +++.+|+.|+|+|+++. +.|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++.+ +..
T Consensus 171 G~v~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 243 (373)
T PRK14301 171 GQVRQS--Q--GFF-QIAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGP 243 (373)
T ss_pred eEEEEE--e--eeE-EEEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCC
Confidence 987643 3 454 45899999999999986 889999999999999999999999999999999999999865 567
Q ss_pred cccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCC
Q 019801 168 TGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF 247 (335)
Q Consensus 168 ~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~ 247 (335)
+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ ..
T Consensus 244 ~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~~~-~~ 319 (373)
T PRK14301 244 PGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLPYLG-SS 319 (373)
T ss_pred CcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCCCCC-CC
Confidence 899999999999999999999999999999999999999999999998 89999998 899999999999999764 34
Q ss_pred CCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 248 MKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 248 ~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
.+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 320 ~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 320 QKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999999999999853
No 22
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-57 Score=440.96 Aligned_cols=265 Identities=28% Similarity=0.549 Sum_probs=233.6
Q ss_pred CChhhHhhhhcCCCCCC---CC-CCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCC
Q 019801 8 HDPFDIFSSFFGGSPFG---GG-SSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCS 83 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~g---gg-~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~ 83 (335)
.++.|+|+.|||+++++ ++ ++..+.++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.......+|+
T Consensus 90 ~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~ 169 (365)
T PRK14290 90 SDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCP 169 (365)
T ss_pred cchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCC
Confidence 46789999999852100 11 111112235899999999999999999999999999999999999999877668999
Q ss_pred CCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCC
Q 019801 84 GCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA 163 (335)
Q Consensus 84 ~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~ 163 (335)
.|+|+|.+...++.|+ +.+|.+.+|+.|.|+|+++. +.|+.|+|++++.+.++++|.||||+.+|++|+|+|+|++
T Consensus 170 ~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~- 245 (365)
T PRK14290 170 TCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS- 245 (365)
T ss_pred CCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC-
Confidence 9999999887775444 34667899999999999976 8999999999999999999999999999999999999996
Q ss_pred CCCCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCC
Q 019801 164 PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLY 243 (335)
Q Consensus 164 ~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~ 243 (335)
+++.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|+||++ +++|++++|+|+|||..
T Consensus 246 ~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G~p~~ 322 (365)
T PRK14290 246 YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAGMPHL 322 (365)
T ss_pred CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCCCCCC
Confidence 6788999999999999999999999999999999999999999999999996 89999998 89999999999999975
Q ss_pred CCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q 019801 244 QRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRP 280 (335)
Q Consensus 244 ~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~~ 280 (335)
. ...+|||||+|+|.+|+.|+++++++|+++|+.+.
T Consensus 323 ~-~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 323 N-GHGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred C-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 3 33589999999999999999999999999997554
No 23
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-57 Score=440.69 Aligned_cols=264 Identities=28% Similarity=0.554 Sum_probs=236.7
Q ss_pred ChhhHhhhhcCCCCCCCC-C--CCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCC
Q 019801 9 DPFDIFSSFFGGSPFGGG-S--SRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSG 84 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg-~--~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~ 84 (335)
++.|+|++|||+.+.+++ + .+.++++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.. .+|+.
T Consensus 86 ~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 165 (374)
T PRK14293 86 GFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCST 165 (374)
T ss_pred chHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCC
Confidence 456899999974111011 0 1123356789999999999999999999999999999999999999987664 78999
Q ss_pred CCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC
Q 019801 85 CQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP 164 (335)
Q Consensus 85 C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~ 164 (335)
|+|+|.+...++++||++++ +.+|+.|.|+|+++. +.|+.|+|.+++.+.++++|+||||+++|++|+|+|+|++.+
T Consensus 166 C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~ 242 (374)
T PRK14293 166 CGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGL 242 (374)
T ss_pred CCCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCC
Confidence 99999999999999999876 689999999999986 889999999999999999999999999999999999999854
Q ss_pred -CCCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCC
Q 019801 165 -DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLY 243 (335)
Q Consensus 165 -~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~ 243 (335)
+..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..
T Consensus 243 ~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~~ 319 (374)
T PRK14293 243 RGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPRL 319 (374)
T ss_pred CCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCCC
Confidence 567899999999999999999999999999999999999999999999997 78999998 89999999999999976
Q ss_pred CCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 244 QRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 244 ~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
+....+|||||+|+|.||++|+++++++|++|+..
T Consensus 320 ~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 320 GNPVARGDHLITVKVKIPTRISDEERELLEKLAKI 354 (374)
T ss_pred CCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 54446899999999999999999999999999964
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.2e-57 Score=440.35 Aligned_cols=254 Identities=32% Similarity=0.605 Sum_probs=226.6
Q ss_pred hhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcc
Q 019801 10 PFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGT 88 (335)
Q Consensus 10 ~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~ 88 (335)
+.|+|+.|||++ ++++.++++++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|...+.. .+|+.|+|+
T Consensus 93 f~~~f~~~fgg~----~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 168 (371)
T PRK10767 93 FGDIFGDIFGGG----RGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGA 168 (371)
T ss_pred hhhhhhhhccCC----ccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCe
Confidence 456777777641 111223456899999999999999999999999999999999999999987764 789999999
Q ss_pred cEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCC-CCCC
Q 019801 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDTV 167 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~-~~~~ 167 (335)
|.++..+ ||+ +++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++. ++..
T Consensus 169 G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 241 (371)
T PRK10767 169 GQVRMQQ----GFF-TVQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGP 241 (371)
T ss_pred eEEEEee----ceE-EEEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCC
Confidence 9876543 466 47789999999999986 88999999999999999999999999999999999999984 4668
Q ss_pred cccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCC
Q 019801 168 TGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF 247 (335)
Q Consensus 168 ~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~ 247 (335)
+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ ..
T Consensus 242 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i~g~G~p~~~-~~ 317 (371)
T PRK10767 242 AGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGR-VKLKIPEG--TQTGKLFRLRGKGVKSVR-SG 317 (371)
T ss_pred CcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCc-EEEEeCCC--CCCCCEEEECCCCcCCCC-CC
Confidence 999999999999999999999999999999999999999999999995 89999998 899999999999999764 34
Q ss_pred CCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 248 MKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 248 ~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
.+|||||+|+|.||+.|+++++++|++++..
T Consensus 318 ~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 318 ARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999999999999963
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.7e-57 Score=438.59 Aligned_cols=258 Identities=26% Similarity=0.553 Sum_probs=228.2
Q ss_pred ChhhHhhhhcCCCCCCCCCCC-C-CCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCC
Q 019801 9 DPFDIFSSFFGGSPFGGGSSR-G-RRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGC 85 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~-~-~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C 85 (335)
+++|+|++||++. |++++.+ . ..++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+.. .+|+.|
T Consensus 90 ~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C 168 (372)
T PRK14300 90 DINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDAC 168 (372)
T ss_pred chhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCc
Confidence 3456777777531 2221111 1 1235799999999999999999999999999999999999999988764 789999
Q ss_pred CcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCC-C
Q 019801 86 QGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 164 (335)
Q Consensus 86 ~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~-~ 164 (335)
+|+|.++.. +||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++. +
T Consensus 169 ~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~ 241 (372)
T PRK14300 169 SGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIR 241 (372)
T ss_pred cCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCC
Confidence 999987642 25665 7889999999999986 88999999999999999999999999999999999999985 4
Q ss_pred CCCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCC
Q 019801 165 DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQ 244 (335)
Q Consensus 165 ~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~ 244 (335)
+..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.|.|+||+| +++|++++|+|+|||..+
T Consensus 242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~p~~~ 319 (372)
T PRK14300 242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGMSKMR 319 (372)
T ss_pred CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCCCCCC
Confidence 678999999999999999999999999999999999999999999999998899999999 899999999999999753
Q ss_pred CCCCCCcEEEEEEEECCCCCCHHHHHHHHHHCC
Q 019801 245 RPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 277 (335)
Q Consensus 245 ~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~ 277 (335)
...+|||||+|+|.||++||++|+++|++|+.
T Consensus 320 -~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 320 -STIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred -CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999999999995
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.2e-57 Score=438.65 Aligned_cols=258 Identities=25% Similarity=0.482 Sum_probs=228.9
Q ss_pred ChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCc
Q 019801 9 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||.+++ ++++..+++++++|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|...... .+|+.|+|
T Consensus 91 ~~~d~f~~~fg~g~~-~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 169 (366)
T PRK14294 91 SFGDIFEDFFGFGGG-RRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGG 169 (366)
T ss_pred hhhhhHHHhhccCCC-cCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCC
Confidence 456899999972111 1111112356899999999999999999999999999999999999999987764 78999999
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCC-CCC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~-~~~ 166 (335)
+|.++.. + ||+ |++++|+.|+|+|+++. +.|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++. ++.
T Consensus 170 ~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 242 (366)
T PRK14294 170 SGQVTQS--Q--GFF-SIRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGG 242 (366)
T ss_pred eEEEEEE--e--eeE-EEEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCC
Confidence 9987643 3 466 47899999999999986 88999999999999999999999999999999999999985 467
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|.||+| +++|++++|+|+|||..+ .
T Consensus 243 ~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p~~~-~ 318 (366)
T PRK14294 243 PPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIPSLR-G 318 (366)
T ss_pred CCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCCCCC-C
Confidence 8999999999999999999999999999999999999999999999998 68999998 899999999999999764 3
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
..+|||||+|+|.+|+.|+++++++|++|+..
T Consensus 319 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~ 350 (366)
T PRK14294 319 GGRGDQIIEVEVKVPTRLTKKQEELLTEFARL 350 (366)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999999999953
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-56 Score=434.99 Aligned_cols=261 Identities=30% Similarity=0.640 Sum_probs=235.6
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCC--cccCCCC
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA--SMKCSGC 85 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~--~~~C~~C 85 (335)
+|+.|+|++|||+++++++ ...++++++.|+.+.+.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.|
T Consensus 85 ~d~~d~f~~~fg~~~~~~~-~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C 163 (371)
T PRK14292 85 FDPMDIFEQLFGGAGFGGG-RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTC 163 (371)
T ss_pred CChHHHHHHhhCCCCcCCC-CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCC
Confidence 3667999999986322111 112345689999999999999999999999999999999999999998764 4789999
Q ss_pred CcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCC
Q 019801 86 QGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPD 165 (335)
Q Consensus 86 ~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~ 165 (335)
+|+|.+...+++.+|++++ +.+|+.|+|.|..+. +.|+.|+|++++.+.++++|.||+|+.+|++|+|+|+|++.++
T Consensus 164 ~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~ 240 (371)
T PRK14292 164 RGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPG 240 (371)
T ss_pred CCccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCC
Confidence 9999999999999999865 789999999999986 8999999999999999999999999999999999999999776
Q ss_pred CCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCC
Q 019801 166 TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245 (335)
Q Consensus 166 ~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~ 245 (335)
+. |||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+. .|+||+| +++|++++|+|+|||..+
T Consensus 241 ~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~~~- 315 (371)
T PRK14292 241 GN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPRLQ- 315 (371)
T ss_pred CC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCCCC-
Confidence 65 999999999999999999999999999999999999999999999984 7999998 899999999999999764
Q ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHCC
Q 019801 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 277 (335)
Q Consensus 246 ~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~ 277 (335)
...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 316 ~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 316 GAGTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33579999999999999999999999999984
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.4e-56 Score=433.07 Aligned_cols=261 Identities=28% Similarity=0.563 Sum_probs=227.5
Q ss_pred CChhhHhhhhcCC---C-CCCCC---CCC---CCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCC
Q 019801 8 HDPFDIFSSFFGG---S-PFGGG---SSR---GRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSG 77 (335)
Q Consensus 8 ~~~~d~F~~fFgg---~-~~ggg---~~~---~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 77 (335)
.++.|+|++||+. + .|++. +++ ..++.+++|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+
T Consensus 91 ~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 170 (382)
T PRK14291 91 GNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPG 170 (382)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCC
Confidence 3567889888531 1 12211 011 123457999999999999999999999999999999999999999887
Q ss_pred Cc-ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEe
Q 019801 78 AS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITF 156 (335)
Q Consensus 78 ~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~ 156 (335)
.. .+|+.|+|+|.++.. . ++++++.+|+.|+|+|. + ++.|..|+|.+++.+.++|+|+|||||.+|++|+|
T Consensus 171 ~~~~~C~~C~G~G~~~~~--~---g~~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 242 (382)
T PRK14291 171 SGEKVCPTCGGSGEIYQR--G---GFFRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRV 242 (382)
T ss_pred CCCccCCCCCCceEEEEe--c---ceEEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEE
Confidence 64 789999999987654 1 34567899999999995 4 48899999999999999999999999999999999
Q ss_pred cCCCCCCC-CCCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEE
Q 019801 157 PGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAI 235 (335)
Q Consensus 157 ~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i 235 (335)
+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.+.|+||+| +++|++++|
T Consensus 243 ~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G~~i~i 320 (382)
T PRK14291 243 PGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEGDKIRV 320 (382)
T ss_pred ecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCCEEEE
Confidence 99999865 788999999999999999999999999999999999999999999999999899999999 899999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEECCC--CCC------HHHHHHHHHHCCCC
Q 019801 236 NEEGMPLYQRPFMKGKLYIHFTVEFPD--SLT------PDQVKALEAILPSR 279 (335)
Q Consensus 236 ~g~Gmp~~~~~~~~GdL~i~~~V~~P~--~l~------~~~~~~l~~~l~~~ 279 (335)
+|+|||..+ ...+|||||+|+|.||+ .|| ++|+++|++|+...
T Consensus 321 ~G~G~p~~~-~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 321 PGKGMPRLK-GSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred CCCCCCCCC-CCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 999999764 34689999999999998 499 99999999987543
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-55 Score=430.91 Aligned_cols=239 Identities=26% Similarity=0.588 Sum_probs=225.0
Q ss_pred CCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcccEEEEEEecCCccceeceecCCC
Q 019801 33 QRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNE 111 (335)
Q Consensus 33 ~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~ 111 (335)
+.++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...... .+|+.|+|+|.++..+++++|++++ +.+|+.
T Consensus 124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~ 202 (386)
T PRK14289 124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPT 202 (386)
T ss_pred CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE-EEecCC
Confidence 45799999999999999999999999999999999999999987654 7899999999999999999999865 899999
Q ss_pred CCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCccccccccc
Q 019801 112 CKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDL 190 (335)
Q Consensus 112 C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL 190 (335)
|+|+|+++. +.|+.|+|++++.+.++++|+||+|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+++||
T Consensus 203 C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL 280 (386)
T PRK14289 203 CNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDL 280 (386)
T ss_pred CCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccce
Confidence 999999986 889999999999999999999999999999999999999864 67799999999999999999999999
Q ss_pred eecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHH
Q 019801 191 FYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVK 270 (335)
Q Consensus 191 ~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~ 270 (335)
++++.|||.+||+|+++.|+||||+ +.|.||++ +++|++++|+|+|||..+ ...+|||||+|+|.||++|+++|++
T Consensus 281 ~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~q~~ 356 (386)
T PRK14289 281 IYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLRLRNKGLPSVN-GYGTGDLLVNVSVYIPETLSKEEKQ 356 (386)
T ss_pred eEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEEECCCCcCCCC-CCCCCcEEEEEEEEeCCCCCHHHHH
Confidence 9999999999999999999999997 89999998 799999999999999754 3468999999999999999999999
Q ss_pred HHHHHCCC
Q 019801 271 ALEAILPS 278 (335)
Q Consensus 271 ~l~~~l~~ 278 (335)
+|++|+..
T Consensus 357 ~l~~l~~~ 364 (386)
T PRK14289 357 TLEKMENS 364 (386)
T ss_pred HHHHHHhh
Confidence 99999974
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-55 Score=429.86 Aligned_cols=240 Identities=27% Similarity=0.567 Sum_probs=224.2
Q ss_pred CCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcccEEEEEEecCCccceeceecCC
Q 019801 32 RQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCN 110 (335)
Q Consensus 32 ~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~ 110 (335)
+++++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+.. .+|+.|+|+|.+...+++++|++++ +.+|+
T Consensus 115 ~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~ 193 (378)
T PRK14283 115 GPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCP 193 (378)
T ss_pred CccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEE-EEECC
Confidence 356899999999999999999999999999999999999999987664 7899999999999999999999864 57999
Q ss_pred CCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCcccccccc
Q 019801 111 ECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGED 189 (335)
Q Consensus 111 ~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~d 189 (335)
.|.|+|+.+. +.|..|+|++++.+.+.++|.||+|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+|
T Consensus 194 ~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~D 271 (378)
T PRK14283 194 DCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGAN 271 (378)
T ss_pred CCCccceecC--CCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCC
Confidence 9999999975 889999999999999999999999999999999999999864 5679999999999999999999999
Q ss_pred ceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHH
Q 019801 190 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQV 269 (335)
Q Consensus 190 L~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~ 269 (335)
|++++.|||.+||+|+++.|+|||| .|.|.||++ +++|++++|+|+|||... ...+|||||+|+|.||++|+++|+
T Consensus 272 L~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~~ri~g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~ 347 (378)
T PRK14283 272 LYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTTFRLKGHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQK 347 (378)
T ss_pred EEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHH
Confidence 9999999999999999999999999 589999998 799999999999999763 346899999999999999999999
Q ss_pred HHHHHHCCC
Q 019801 270 KALEAILPS 278 (335)
Q Consensus 270 ~~l~~~l~~ 278 (335)
++|++|+..
T Consensus 348 ~ll~~~~~~ 356 (378)
T PRK14283 348 ELLREFASI 356 (378)
T ss_pred HHHHHHHhh
Confidence 999999853
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=3.4e-38 Score=300.06 Aligned_cols=201 Identities=26% Similarity=0.378 Sum_probs=169.4
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCc
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQG 87 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 87 (335)
.++.|+|+.|||+++ +.++...++++.|+.+.+.|||+|+|+|+.+++.+.+.+ |. |
T Consensus 92 ~~~~~~f~~~~g~~~---~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~----------------g 148 (306)
T PRK10266 92 EDFDDIFSSIFGQHA---RQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN----------------A 148 (306)
T ss_pred CCHHHHHHHHhCCCC---CCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc----------------C
Confidence 367899999998521 111123346789999999999999999999998876532 21 2
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~ 166 (335)
.|.. + ....++++|+||+|+++|++|+|+|+|++.+ +.
T Consensus 149 ~G~~-----------~------------------------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 187 (306)
T PRK10266 149 FGMI-----------E------------------------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGG 187 (306)
T ss_pred CCeE-----------E------------------------------EeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCC
Confidence 2211 0 0123679999999999999999999999865 56
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.+|||||+|+++||+.|+|+|+||+++++|||.+||+|+++.|+|+||+ +.|+||++ +++|++++|+|+|||..
T Consensus 188 ~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p~~--- 261 (306)
T PRK10266 188 PNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLVSK--- 261 (306)
T ss_pred CCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCCCC---
Confidence 7899999999999999999999999999999999999999999999998 89999998 79999999999999964
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
..+|||||+|+|.+|+.|+++|+++|++|+..
T Consensus 262 ~~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 262 KQTGDLYAVLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 25899999999999999999999999999864
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-38 Score=298.89 Aligned_cols=184 Identities=28% Similarity=0.522 Sum_probs=159.6
Q ss_pred ChhhHhhhhcCCC-CCCCCC----CCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCC
Q 019801 9 DPFDIFSSFFGGS-PFGGGS----SRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCS 83 (335)
Q Consensus 9 ~~~d~F~~fFgg~-~~ggg~----~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~ 83 (335)
++.|+|++|||++ ++++.+ +....++++.|+.+.+.|||+|+|.|+++++.+.
T Consensus 97 ~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---------------------- 154 (291)
T PRK14299 97 DFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---------------------- 154 (291)
T ss_pred CHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----------------------
Confidence 5679999999852 111100 0012356899999999999999999998886431
Q ss_pred CCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCC
Q 019801 84 GCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA 163 (335)
Q Consensus 84 ~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~ 163 (335)
.++++|+||+|+++|++|+|+|+|++.
T Consensus 155 -----------------------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~G~~~ 181 (291)
T PRK14299 155 -----------------------------------------------------GERLSVRIPPGVREGQVIRLAGKGRQG 181 (291)
T ss_pred -----------------------------------------------------CEEEEEecCCCcCCCcEEEECCCCCCC
Confidence 146789999999999999999999863
Q ss_pred CCCCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCC
Q 019801 164 PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLY 243 (335)
Q Consensus 164 ~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~ 243 (335)
|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..
T Consensus 182 -----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~rl~g~G~p~~ 253 (291)
T PRK14299 182 -----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKLRLKGKGWPRG 253 (291)
T ss_pred -----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999997 89999998 89999999999999963
Q ss_pred CCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHCC
Q 019801 244 QRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 277 (335)
Q Consensus 244 ~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~ 277 (335)
++.+|||||+|+|.||+.|+++++++|++|+.
T Consensus 254 --~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 254 --PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred --CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999999999974
No 33
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=4e-33 Score=282.06 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=140.1
Q ss_pred CCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCc
Q 019801 35 RGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKG 114 (335)
Q Consensus 35 ~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G 114 (335)
..-+|.+.|.|||+++|+|+++++++.|.+.| |.|
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G----------------------------------------- 689 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT----------------------------------------- 689 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC-----------------------------------------
Confidence 35689999999999999999999999887653 111
Q ss_pred eeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccccceecc
Q 019801 115 TGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 194 (335)
Q Consensus 115 ~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~ 194 (335)
...+.+.++++|+||+|+++|++|+|+|+|++.+++ +|||||+|++++|+.|+|+|+|||+++
T Consensus 690 ----------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg-~GDLyVvIkVKPHp~FrRdGdDL~~~v 752 (871)
T TIGR03835 690 ----------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNG-CGDLKVVFKVIPSNFFQIKNDGLHVAA 752 (871)
T ss_pred ----------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCC-CCCEEEEEEEcCCCCeEEECCeEEEEE
Confidence 113455789999999999999999999999987666 499999999999999999999999999
Q ss_pred cCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEE
Q 019801 195 TLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVE 259 (335)
Q Consensus 195 ~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~ 259 (335)
.|+|.+||+|+++.|+||||+ +.|+||++ ++||++++|+|+|||.. ++.||||||+|+|.
T Consensus 753 ~ISL~EALLGgtIeIpTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V~ 812 (871)
T TIGR03835 753 LVDPLVAYNGGIIDVFGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKT--KYDKGSLIVHLYYS 812 (871)
T ss_pred ecCHHHHhcCCEEEeeCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCC--CCCCCCEEEEEEEe
Confidence 999999999999999999998 89999988 89999999999999953 34689999999985
No 34
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.88 E-value=3.8e-23 Score=159.31 Aligned_cols=81 Identities=37% Similarity=0.621 Sum_probs=70.3
Q ss_pred cceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHH
Q 019801 189 DLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQ 268 (335)
Q Consensus 189 dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~ 268 (335)
|||++++|||+||++|+++.|+||||+.+.|++|++ +++|++++|+|+|||..++++.+|||||+|+|.||++||++|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 799999999999999999999999999999999998 899999999999999987666899999999999999999999
Q ss_pred HHH
Q 019801 269 VKA 271 (335)
Q Consensus 269 ~~~ 271 (335)
+++
T Consensus 79 k~l 81 (81)
T PF01556_consen 79 KEL 81 (81)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 35
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-19 Score=167.99 Aligned_cols=227 Identities=34% Similarity=0.581 Sum_probs=179.1
Q ss_pred hhHhhhhcCCCCCCC-CCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCccc
Q 019801 11 FDIFSSFFGGSPFGG-GSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTG 89 (335)
Q Consensus 11 ~d~F~~fFgg~~~gg-g~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G 89 (335)
.|+|+.||+.-++.. |-......++|.++...++.+++++|.+...+....+.+.|. |.|+ . .|+-.
T Consensus 100 ~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~-------~---~~~~~- 167 (336)
T KOG0713|consen 100 NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGT-------R---KCNCR- 167 (336)
T ss_pred cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCcc-------c---ccCCh-
Confidence 588888887432211 111123367899999999999999999988776666666543 1111 1 11111
Q ss_pred EEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCCCcc
Q 019801 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTG 169 (335)
Q Consensus 90 ~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~G 169 (335)
..+..++.++|+++.++ ...|..|.+.+...+...+++.+..++..+....+..+|.+..-+.+|
T Consensus 168 ~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~g 232 (336)
T KOG0713|consen 168 LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPG 232 (336)
T ss_pred hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccC
Confidence 23445667777766654 245666677778889999999999999999999999999888788999
Q ss_pred cEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCC
Q 019801 170 DIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 249 (335)
Q Consensus 170 DL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~ 249 (335)
|+++.+..-+|+.|.|++++|++++.|||.+||.|+...+.++|+..+.++.. .+..|+..++.+++|||..++....
T Consensus 233 D~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~--~~~~p~~~~~~~~~~~~~l~~~~~~ 310 (336)
T KOG0713|consen 233 DLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRK--KITWPGARTRKKGEGMPLLKNRNEK 310 (336)
T ss_pred CceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhh--hccccchhhhhhhccchhhhccchh
Confidence 99999999999999999999999999999999999999999999986666543 3468999999999999987777789
Q ss_pred CcEEEEEEEECCCC-CCH
Q 019801 250 GKLYIHFTVEFPDS-LTP 266 (335)
Q Consensus 250 GdL~i~~~V~~P~~-l~~ 266 (335)
|++|++|.+.+|.+ +++
T Consensus 311 ~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 311 GNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred cceeEEecccCcccccch
Confidence 99999999999966 565
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.5e-18 Score=158.68 Aligned_cols=171 Identities=27% Similarity=0.631 Sum_probs=146.8
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCC
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
+++.|+|..+|++. ......+.++.+.+.++|+++..|..+.+.+.....|.+|.|.|...+.. ..|..|.
T Consensus 117 g~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 188 (288)
T KOG0715|consen 117 GNPFDVFLEFFGGK--------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCS 188 (288)
T ss_pred CCccchHHHhhccc--------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhh
Confidence 36889999998740 11223467888889999999999999999999999999999999888765 7899999
Q ss_pred cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCC
Q 019801 87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 166 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~ 166 (335)
|+|.........+.+ . +|..|.|.|.++. +.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.+..
T Consensus 189 ~~~~~~~~~~~~f~~----~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~---- 257 (288)
T KOG0715|consen 189 GRGLVSNPKEDPFIL----Y-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND---- 257 (288)
T ss_pred CcccccccccCCcce----e-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc----
Confidence 999766544444422 2 8999999999997 4499999999999999999999999999999999998753
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHH
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTE 200 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~e 200 (335)
||+|++.|.+++.|+|+|.|+++++.|++.+
T Consensus 258 ---~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 ---DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred ---eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998753
No 37
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.58 E-value=4.1e-15 Score=110.00 Aligned_cols=65 Identities=42% Similarity=0.945 Sum_probs=53.5
Q ss_pred cCCCCCCCCCCCCc-ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCe
Q 019801 66 CSKCSGKGSKSGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDK 132 (335)
Q Consensus 66 C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g 132 (335)
|+.|+|+|++++.. .+|+.|+|+|+++.+++ .|+++++++.+|+.|+|+|++| ++++|+.|+|++
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 89999999977654 89999999999999988 6778889999999999999999 779999999975
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=2.1e-13 Score=133.38 Aligned_cols=129 Identities=22% Similarity=0.517 Sum_probs=90.7
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..++|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...+
T Consensus 149 ~~C~G~g~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 214 (372)
T PRK14300 149 DTCHGSGSE-KGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------KNPCKKCHGMGRYHKQR 214 (372)
T ss_pred CCCCCcccC-CCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------CCCCCCCCCceEEEeeE
Confidence 456776654 223456899999999652 2 235899999999875 57899999999975422
Q ss_pred CC---------------------CC--------------------------------------CCCCCeE-EEE--eEEE
Q 019801 123 DR---------------------CP--------------------------------------QCKGDKV-VQE--KKVL 140 (335)
Q Consensus 123 ~~---------------------C~--------------------------------------~C~G~g~-~~~--~~~l 140 (335)
.. .. ...|..+ +.. .+.+
T Consensus 215 ~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i 294 (372)
T PRK14300 215 NLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKV 294 (372)
T ss_pred EEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEE
Confidence 22 00 0001111 111 2579
Q ss_pred EEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccce
Q 019801 141 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLF 191 (335)
Q Consensus 141 ~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~ 191 (335)
+|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|..|+-+...|+
T Consensus 295 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l 346 (372)
T PRK14300 295 NLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELL 346 (372)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999998653 56899999999999887655544433
No 39
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1e-13 Score=133.21 Aligned_cols=133 Identities=22% Similarity=0.449 Sum_probs=96.9
Q ss_pred eehheeceeeEeecceeeEcCCCCCCCCCC-----C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 47 LEDLYLGTSKKLSLSRNVICSKCSGKGSKS-----G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 47 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
.-+.|.|...+ .-+...+|++|+|+|... + ..++|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 144 ~C~~C~GsGak-~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------------~~pC~~C~G~G~v 209 (371)
T COG0484 144 TCSTCHGSGAK-PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------------KDPCGKCKGKGRV 209 (371)
T ss_pred ECCcCCCCCCC-CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------------CCCCCCCCCCCeE
Confidence 34678888665 344678999999999642 2 236899999999875 6899999999997
Q ss_pred EcCcCC-----CCCCC------------------------------------------------------CCeE-EE-Ee
Q 019801 119 INDKDR-----CPQCK------------------------------------------------------GDKV-VQ-EK 137 (335)
Q Consensus 119 ~~~~~~-----C~~C~------------------------------------------------------G~g~-~~-~~ 137 (335)
...+.. -.... |..+ +. -.
T Consensus 210 ~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~ 289 (371)
T COG0484 210 KKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLD 289 (371)
T ss_pred eeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecC
Confidence 653333 11111 1111 11 12
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCC-CCCCcccEEEEEEEecCCccccccccceec
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYE 193 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~-~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~ 193 (335)
..++|+||+|++.|+.++|+|+|++. .+...|||||+|+|.-+..++.....|+-+
T Consensus 290 g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 290 GRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred CCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 34899999999999999999999985 455679999999999888877666555543
No 40
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=1.1e-13 Score=135.25 Aligned_cols=133 Identities=24% Similarity=0.366 Sum_probs=96.3
Q ss_pred ehheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeE
Q 019801 48 EDLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 117 (335)
Q Consensus 48 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~ 117 (335)
-..|+|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ...|+.|+|.|.
T Consensus 155 C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~ 220 (369)
T PRK14282 155 CPHCGGTGVE-PGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------------GEYCHECGGSGR 220 (369)
T ss_pred CCCCCccCCC-CCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------------CCCCCCCCCcee
Confidence 3556776654 223456899999999642 2 135899999999864 577999999997
Q ss_pred EEcCcCC-----CCCCC------------------------------------------------------CCeE-EE--
Q 019801 118 TINDKDR-----CPQCK------------------------------------------------------GDKV-VQ-- 135 (335)
Q Consensus 118 ~~~~~~~-----C~~C~------------------------------------------------------G~g~-~~-- 135 (335)
+...+.. -..-. |..+ +.
T Consensus 221 v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~l 300 (369)
T PRK14282 221 IRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLP 300 (369)
T ss_pred EEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCC
Confidence 6542222 00000 1111 11
Q ss_pred EeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCccccccccceecc
Q 019801 136 EKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 194 (335)
Q Consensus 136 ~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~ 194 (335)
..+.++|+||+|+++|++|+|+|+|++.+ +..+|||||+|+++.|+.|++++.+|+..+
T Consensus 301 dG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 301 EGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 12568999999999999999999999864 346899999999999999999999887754
No 41
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=7.1e-13 Score=129.40 Aligned_cols=133 Identities=24% Similarity=0.448 Sum_probs=95.6
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..+.|....- -.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|+.|+|.|.+...+
T Consensus 148 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 213 (366)
T PRK14294 148 EECHGSGCEP-GTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------------VSPCKTCHGQGRVRVSK 213 (366)
T ss_pred CCCCCccccC-CCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------------CcCCCCCCCceEeecce
Confidence 4466765542 22356899999999653 1 236899999999865 57899999999876533
Q ss_pred CC-----CCCC------------------------------------------------------CCCe-EEE-EeEEEE
Q 019801 123 DR-----CPQC------------------------------------------------------KGDK-VVQ-EKKVLE 141 (335)
Q Consensus 123 ~~-----C~~C------------------------------------------------------~G~g-~~~-~~~~l~ 141 (335)
.. -..- .|.. .+. -...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~ 293 (366)
T PRK14294 214 TVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERE 293 (366)
T ss_pred eEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEE
Confidence 22 0000 0111 111 013469
Q ss_pred EEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccceeccc
Q 019801 142 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEHT 195 (335)
Q Consensus 142 V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~ 195 (335)
|+||+|+++|++|+|+|+|++.++ ..+|||||+|++..|+.|+++..+|+..+.
T Consensus 294 v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 294 LKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred EEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999998654 468999999999999999999888887643
No 42
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=7.7e-13 Score=129.04 Aligned_cols=131 Identities=23% Similarity=0.516 Sum_probs=94.8
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..|+|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 215 (365)
T PRK14285 150 ESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------SNPCKSCKGKGSLKKKE 215 (365)
T ss_pred CCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------CCCCCCCCCCCEEeccE
Confidence 457777654 223456899999999642 1 236899999999865 56899999999775432
Q ss_pred CC-----CCCCC------------------------------------------------------CCeE-EE--EeEEE
Q 019801 123 DR-----CPQCK------------------------------------------------------GDKV-VQ--EKKVL 140 (335)
Q Consensus 123 ~~-----C~~C~------------------------------------------------------G~g~-~~--~~~~l 140 (335)
.. -..-. |..+ +. ..+.+
T Consensus 216 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v 295 (365)
T PRK14285 216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKI 295 (365)
T ss_pred EEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEE
Confidence 22 00000 1111 11 11579
Q ss_pred EEEEecCCcCCcEEEecCCCCCCCCC-CcccEEEEEEEecCCccccccccceec
Q 019801 141 EVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGEDLFYE 193 (335)
Q Consensus 141 ~V~Ip~G~~~G~~i~~~G~G~~~~~~-~~GDL~v~i~v~~h~~f~R~g~dL~~~ 193 (335)
+|+||+|+++|++|+|+|+|++.++. ..|||||+|+++.|+.|++++..|+-.
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999986544 469999999999999999888766654
No 43
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=7.3e-13 Score=129.27 Aligned_cols=131 Identities=21% Similarity=0.463 Sum_probs=96.3
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-----C-----CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-----G-----ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..|.|....-. ....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 153 ~~C~G~g~~~~--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 217 (365)
T PRK14290 153 PDCSGTGAKNG--KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------EEKCPRCNGTGTV 217 (365)
T ss_pred CCCccccCCCC--CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------cCCCCCCCCceeE
Confidence 45667665432 457899999999642 1 125899999999864 5789999999987
Q ss_pred EcCcCC-----CCCCC----------------------------------------------------CCe-EEE-EeEE
Q 019801 119 INDKDR-----CPQCK----------------------------------------------------GDK-VVQ-EKKV 139 (335)
Q Consensus 119 ~~~~~~-----C~~C~----------------------------------------------------G~g-~~~-~~~~ 139 (335)
...+.. -..-+ |.. .+. ....
T Consensus 218 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~ 297 (365)
T PRK14290 218 VVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK 297 (365)
T ss_pred EEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce
Confidence 543222 00000 111 111 1246
Q ss_pred EEEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccceecc
Q 019801 140 LEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEH 194 (335)
Q Consensus 140 l~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~~~~ 194 (335)
++|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 298 i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 298 YNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999998654 36899999999999999999999988774
No 44
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=8.4e-13 Score=129.25 Aligned_cols=132 Identities=22% Similarity=0.407 Sum_probs=94.3
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..|+|...+- -.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 145 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 210 (377)
T PRK14298 145 STCSGTGAKP-GTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------------ESPCPVCSGTGKV 210 (377)
T ss_pred CCCCCCcccC-CCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------------CCCCCCCCCccEE
Confidence 4567766552 23346799999999642 1 236899999999864 5679999999987
Q ss_pred EcCcCC-----CCCCC------------------------------------------------------CCe-EEE-Ee
Q 019801 119 INDKDR-----CPQCK------------------------------------------------------GDK-VVQ-EK 137 (335)
Q Consensus 119 ~~~~~~-----C~~C~------------------------------------------------------G~g-~~~-~~ 137 (335)
...+.. -..-. |.. .+. -.
T Consensus 211 ~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 290 (377)
T PRK14298 211 RKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLY 290 (377)
T ss_pred EEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCC
Confidence 542222 00000 111 111 11
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccceecc
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEH 194 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~~~~ 194 (335)
..++|+||+|+++|++++|+|+|++..+ ...|||||+|+|..|+.|++++.+|+.++
T Consensus 291 G~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 291 GKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999999999998543 45799999999999999999988887764
No 45
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=2.6e-12 Score=126.30 Aligned_cols=170 Identities=24% Similarity=0.403 Sum_probs=104.2
Q ss_pred CCCC-hhhHhhhhcCCCCCCCCCCCCCCC-------------CCCCceEEEEEEe-eehheeceeeEeecceeeEcCCCC
Q 019801 6 GAHD-PFDIFSSFFGGSPFGGGSSRGRRQ-------------RRGEDVVHPLKVS-LEDLYLGTSKKLSLSRNVICSKCS 70 (335)
Q Consensus 6 ~~~~-~~d~F~~fFgg~~~ggg~~~~~~~-------------~~g~di~~~l~vt-lee~~~G~~~~i~~~r~~~C~~C~ 70 (335)
++.| |.++|+.|||++......+..+++ ..|....+.+... +...|+|....- -.....|+.|+
T Consensus 101 ~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~-~~~~~~C~~C~ 179 (386)
T PRK14277 101 GFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKP-GSKPVTCPVCH 179 (386)
T ss_pred chhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCC-CCCCccCCCCC
Confidence 3666 568999999853211111111111 2344333333221 234567766542 23356899999
Q ss_pred CCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCC----------------
Q 019801 71 GKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR---------------- 124 (335)
Q Consensus 71 G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~---------------- 124 (335)
|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...+..
T Consensus 180 G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 246 (386)
T PRK14277 180 GTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------------TDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITL 246 (386)
T ss_pred CEEEEEEEEeccCceEEEEEECCCCCcceeec-------------cCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEE
Confidence 999642 2 125899999999865 5679999999987543222
Q ss_pred -----C-CC--CCCC------------------------------------eEEEE-eEEEEEEEecCCcCCcEEEecCC
Q 019801 125 -----C-PQ--CKGD------------------------------------KVVQE-KKVLEVIVEKGMQNGQKITFPGE 159 (335)
Q Consensus 125 -----C-~~--C~G~------------------------------------g~~~~-~~~l~V~Ip~G~~~G~~i~~~G~ 159 (335)
. .. =.|. -.+.. ...++|.||+|+++|++++|+|+
T Consensus 247 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~ 326 (386)
T PRK14277 247 RGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGK 326 (386)
T ss_pred ccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCC
Confidence 0 00 0011 11100 12379999999999999999999
Q ss_pred CCCCCC-CCcccEEEEEEEecCCcccccccc
Q 019801 160 ADEAPD-TVTGDIVFVLQQKEHPKFKRKGED 189 (335)
Q Consensus 160 G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~d 189 (335)
|.+..+ ...|||||+|+|.-+..++.+...
T Consensus 327 G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~ 357 (386)
T PRK14277 327 GIPHLRGRGRGDQIVKVYIEVPKKLTEKQKE 357 (386)
T ss_pred CCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence 998543 357999999999977654444433
No 46
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=2.4e-12 Score=126.65 Aligned_cols=126 Identities=25% Similarity=0.498 Sum_probs=89.3
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC------CCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS------GASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~------~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..|+|...+- -.....|+.|+|+|... ....+|+.|+|+|.++ ..+|+.|+|.|.+...+
T Consensus 177 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------------~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 177 TTCHGSGARP-GTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------------EDPCEECKGTGVTTRTR 242 (392)
T ss_pred CCCccccccC-CCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------------CCcCCCCCCCeEEEEee
Confidence 4567776652 23457899999999753 1236899999999875 57899999999876432
Q ss_pred CC----------------------CCCC--C-----------------------------------CCeE-EE-EeEEEE
Q 019801 123 DR----------------------CPQC--K-----------------------------------GDKV-VQ-EKKVLE 141 (335)
Q Consensus 123 ~~----------------------C~~C--~-----------------------------------G~g~-~~-~~~~l~ 141 (335)
.. -... . |..+ +. -...++
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~ 322 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG 322 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence 22 0000 0 1111 11 124589
Q ss_pred EEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccc
Q 019801 142 VIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGE 188 (335)
Q Consensus 142 V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~ 188 (335)
|+||+|+++|++|+|+|+|++.++..+|||||+|+|..+..++.+..
T Consensus 323 v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~ 369 (392)
T PRK14279 323 VKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAA 369 (392)
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 99999999999999999999876667899999999998875544433
No 47
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.2e-12 Score=125.86 Aligned_cols=131 Identities=20% Similarity=0.476 Sum_probs=93.2
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..|+|...+.. .....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...+
T Consensus 162 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 227 (391)
T PRK14284 162 DACSGSGANSS-QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------------TDPCSVCRGQGRIKDKR 227 (391)
T ss_pred CCCcccccCCC-CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------------CCcCCCCCCcceecceE
Confidence 45677666533 2356899999999642 1 236899999999864 56799999999875422
Q ss_pred CC-----CCC------------------------------------------------------CCCCe-EEEE---eEE
Q 019801 123 DR-----CPQ------------------------------------------------------CKGDK-VVQE---KKV 139 (335)
Q Consensus 123 ~~-----C~~------------------------------------------------------C~G~g-~~~~---~~~ 139 (335)
.. -.. ..|.. .+.. ...
T Consensus 228 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~ 307 (391)
T PRK14284 228 SVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGT 307 (391)
T ss_pred EEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcE
Confidence 22 000 01211 2211 257
Q ss_pred EEEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccceec
Q 019801 140 LEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYE 193 (335)
Q Consensus 140 l~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~~~ 193 (335)
++|+||+|+++|++++|+|+|++.++ ..+|||||+|++..++.++.+...|+..
T Consensus 308 i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 308 CRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred EEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999999998653 4689999999999998887776665544
No 48
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=2.5e-12 Score=125.85 Aligned_cols=132 Identities=22% Similarity=0.478 Sum_probs=94.2
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..|.|....- -.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+...+
T Consensus 146 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 211 (371)
T PRK10767 146 DTCHGSGAKP-GTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------------KDPCKKCHGQGRVEKEK 211 (371)
T ss_pred CCCCCcccCC-CCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------------CCCCCCCCCCceEeeee
Confidence 4566766542 22346899999999642 1 236899999999864 56799999999875422
Q ss_pred CC---------------------CCCC---CCCeE------------------------------------EE-EeEEEE
Q 019801 123 DR---------------------CPQC---KGDKV------------------------------------VQ-EKKVLE 141 (335)
Q Consensus 123 ~~---------------------C~~C---~G~g~------------------------------------~~-~~~~l~ 141 (335)
.. -... .|.-+ +. -...++
T Consensus 212 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~ 291 (371)
T PRK10767 212 TLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVK 291 (371)
T ss_pred eEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEE
Confidence 22 0000 01101 10 113589
Q ss_pred EEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCccccccccceecc
Q 019801 142 VIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 194 (335)
Q Consensus 142 V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~ 194 (335)
|.||+|+++|++++|+|+|.+.+ +...|||||+|+|..|+.|++++.+|+.++
T Consensus 292 v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 292 LKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999864 346799999999999999999998887764
No 49
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=3.9e-12 Score=124.42 Aligned_cols=131 Identities=24% Similarity=0.471 Sum_probs=92.3
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..+.|.... .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...+
T Consensus 148 ~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 213 (373)
T PRK14301 148 DDCGGSGAA-PGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------------THPCPKCKGSGIVQQTR 213 (373)
T ss_pred CCCCCcccC-CCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------------CCCCCCCCCCceeccce
Confidence 456776654 223346899999999643 1 236899999999865 56799999999875432
Q ss_pred CC----------------------CCCC--CC------------------------------------CeEEE-EeEEEE
Q 019801 123 DR----------------------CPQC--KG------------------------------------DKVVQ-EKKVLE 141 (335)
Q Consensus 123 ~~----------------------C~~C--~G------------------------------------~g~~~-~~~~l~ 141 (335)
.. .... .| ...+. -...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~ 293 (373)
T PRK14301 214 ELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVT 293 (373)
T ss_pred EEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEE
Confidence 22 0000 01 11111 113489
Q ss_pred EEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccceec
Q 019801 142 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYE 193 (335)
Q Consensus 142 V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~~~ 193 (335)
|+||+|+++|++++|+|+|.+.++ ..+|||||+|+|..|+.++.+..+|+..
T Consensus 294 v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 294 LDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998654 4589999999999998777766655554
No 50
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=7e-12 Score=122.87 Aligned_cols=127 Identities=24% Similarity=0.462 Sum_probs=88.7
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
+.|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 143 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 208 (378)
T PRK14278 143 DRCHGKGTA-GDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------PDPCHECAGDGRV 208 (378)
T ss_pred CCCcCccCC-CCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------CCCCCCCCCceeE
Confidence 456776654 223456899999999642 1 135899999999875 4679999999987
Q ss_pred EcCcCC----------------------CC--C------------------------------------CCCCeEEE--E
Q 019801 119 INDKDR----------------------CP--Q------------------------------------CKGDKVVQ--E 136 (335)
Q Consensus 119 ~~~~~~----------------------C~--~------------------------------------C~G~g~~~--~ 136 (335)
...+.. -. . +.+.-.+. .
T Consensus 209 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 288 (378)
T PRK14278 209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288 (378)
T ss_pred ecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCC
Confidence 653322 00 0 00111122 1
Q ss_pred eEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCcccccccc
Q 019801 137 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGED 189 (335)
Q Consensus 137 ~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~d 189 (335)
...++|.||+|+++|++++|+|+|++.. +...|||||+|+|.-+..++.+...
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~ 342 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIE 342 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence 3678999999999999999999999864 3468999999999977655444333
No 51
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=9.6e-12 Score=121.54 Aligned_cols=130 Identities=25% Similarity=0.492 Sum_probs=90.7
Q ss_pred eehheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEc
Q 019801 47 LEDLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 47 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
+.+.|+|...+- .....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+..
T Consensus 142 ~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~ 206 (369)
T PRK14288 142 VCESCDGTGAKD--KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------KTPCQACKGKTYILK 206 (369)
T ss_pred cCCCCCCcccCC--CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------cccCccCCCcceEEE
Confidence 345667776543 2457899999999642 1 235899999999865 567999999987754
Q ss_pred CcCC-----CCCC------------------CCC------------------------------------eEEE--EeEE
Q 019801 121 DKDR-----CPQC------------------KGD------------------------------------KVVQ--EKKV 139 (335)
Q Consensus 121 ~~~~-----C~~C------------------~G~------------------------------------g~~~--~~~~ 139 (335)
.+.. -..- .|. -.+. +.+.
T Consensus 207 ~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~ 286 (369)
T PRK14288 207 DEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDE 286 (369)
T ss_pred EEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCE
Confidence 2221 0000 011 0111 1146
Q ss_pred EEEEEecCCcCCcEEEecCCCCCCCCC-CcccEEEEEEEecCCccccccccce
Q 019801 140 LEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGEDLF 191 (335)
Q Consensus 140 l~V~Ip~G~~~G~~i~~~G~G~~~~~~-~~GDL~v~i~v~~h~~f~R~g~dL~ 191 (335)
++|+||+++++|++++|+|+|++.++. ..|||||+|+|..|..|+.+...|+
T Consensus 287 l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 339 (369)
T PRK14288 287 LELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL 339 (369)
T ss_pred EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 899999999999999999999986654 4699999999999987766554443
No 52
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.28 E-value=7.4e-12 Score=121.79 Aligned_cols=130 Identities=22% Similarity=0.464 Sum_probs=91.5
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..++|....- -.....|+.|+|+|... + ...+|+.|+|+|.++ +..|+.|+|.|.+
T Consensus 147 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 147 ETCHGTGAKP-GTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------KEPCSTCKGKGRV 212 (354)
T ss_pred CCCCCCCCCC-CCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------CCCCCCCCCCcEe
Confidence 4567765542 23356799999999632 1 135899999999865 4679999999987
Q ss_pred EcCcCC----------------------CCCC--CC-----------------------------------Ce-EEEE-e
Q 019801 119 INDKDR----------------------CPQC--KG-----------------------------------DK-VVQE-K 137 (335)
Q Consensus 119 ~~~~~~----------------------C~~C--~G-----------------------------------~g-~~~~-~ 137 (335)
...+.. ...- .| .. .+.. .
T Consensus 213 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ld 292 (354)
T TIGR02349 213 KERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD 292 (354)
T ss_pred cccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCC
Confidence 653332 0000 01 11 1100 1
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCcccccccccee
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFY 192 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~~ 192 (335)
..++|.||+|+++|++++|+|+|++.++ ..+|||||+|+|..++.|+++...++-
T Consensus 293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999999998654 368999999999999888877765543
No 53
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=7.6e-12 Score=123.02 Aligned_cols=130 Identities=25% Similarity=0.490 Sum_probs=91.1
Q ss_pred ehheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcC
Q 019801 48 EDLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND 121 (335)
Q Consensus 48 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~ 121 (335)
-..|+|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|.|.|.+...
T Consensus 169 C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~~~~ 234 (389)
T PRK14295 169 CPACSGTGAK-NGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------------DDPCLVCKGSGRAKSS 234 (389)
T ss_pred CCCCcccccC-CCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------------ccCCCCCCCCceEeee
Confidence 4567777665 223457899999999642 1 236899999999875 5789999999987643
Q ss_pred cCC----------------------CCC--CC-----------------------------------CCeE-EE--EeEE
Q 019801 122 KDR----------------------CPQ--CK-----------------------------------GDKV-VQ--EKKV 139 (335)
Q Consensus 122 ~~~----------------------C~~--C~-----------------------------------G~g~-~~--~~~~ 139 (335)
+.. ... -. |..+ +. ..+.
T Consensus 235 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~ 314 (389)
T PRK14295 235 RTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPP 314 (389)
T ss_pred eEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCE
Confidence 222 000 00 1111 11 1247
Q ss_pred EEEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccccce
Q 019801 140 LEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLF 191 (335)
Q Consensus 140 l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL~ 191 (335)
++|+||+|+++|++|+|+|+|++..+..+|||||+|++.-+..++.+...|+
T Consensus 315 ~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l 366 (389)
T PRK14295 315 VTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREAL 366 (389)
T ss_pred EEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999999866667899999999998765554443333
No 54
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=9.9e-12 Score=121.54 Aligned_cols=133 Identities=23% Similarity=0.430 Sum_probs=92.8
Q ss_pred ehheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeE
Q 019801 48 EDLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 117 (335)
Q Consensus 48 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~ 117 (335)
...|+|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|..|.|.|.
T Consensus 141 C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~ 206 (371)
T PRK14287 141 CGTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------------KQKCATCGGKGK 206 (371)
T ss_pred CCCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------------cccCCCCCCeeE
Confidence 3567777654 333457899999999642 1 135899999999865 567999999997
Q ss_pred EEcCcCC----------------------CCC-------------------------------------CCCCeE-EE-E
Q 019801 118 TINDKDR----------------------CPQ-------------------------------------CKGDKV-VQ-E 136 (335)
Q Consensus 118 ~~~~~~~----------------------C~~-------------------------------------C~G~g~-~~-~ 136 (335)
+...+.. -.. ..|..+ +. -
T Consensus 207 v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~l 286 (371)
T PRK14287 207 VRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTL 286 (371)
T ss_pred EeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcC
Confidence 6532111 000 001111 11 1
Q ss_pred eEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCccccccccceecc
Q 019801 137 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 194 (335)
Q Consensus 137 ~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~ 194 (335)
...++|+||+|+++|++++|+|+|.+.. +...|||||+|+|..|+.|+++...|+..+
T Consensus 287 dg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 287 NGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 1348999999999999999999999854 345799999999999998887776655543
No 55
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.5e-11 Score=120.43 Aligned_cols=132 Identities=21% Similarity=0.420 Sum_probs=93.9
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------CC---cccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------GA---SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..+.|...+-. .....|+.|+|+|... +. ..+|+.|+|+|.++ ..+|..|.|+|.+
T Consensus 147 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (374)
T PRK14293 147 ETCRGSGAKPG-TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------------EDPCDACGGQGVK 212 (374)
T ss_pred CCCCCcCCCCC-CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------------ccCCCCCCCCccc
Confidence 45667665432 2346899999999642 21 25899999999865 5689999999976
Q ss_pred EcCcCC----------------------CCC--------------------------------------CCCCeEEEE-e
Q 019801 119 INDKDR----------------------CPQ--------------------------------------CKGDKVVQE-K 137 (335)
Q Consensus 119 ~~~~~~----------------------C~~--------------------------------------C~G~g~~~~-~ 137 (335)
...+.. -.. |.+.-.+.. .
T Consensus 213 ~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 292 (374)
T PRK14293 213 QVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVD 292 (374)
T ss_pred ccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCC
Confidence 543221 000 001111111 1
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCCCC--CcccEEEEEEEecCCccccccccceecc
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAPDT--VTGDIVFVLQQKEHPKFKRKGEDLFYEH 194 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~--~~GDL~v~i~v~~h~~f~R~g~dL~~~~ 194 (335)
..++|+||+|+++|++++|+|+|.+.++. ..|||||+|+|..|+.|++++.+|+-.+
T Consensus 293 G~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 293 GPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999999986543 4799999999999999999888877654
No 56
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.2e-11 Score=120.94 Aligned_cols=129 Identities=23% Similarity=0.465 Sum_probs=89.8
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..|+|...+-. .....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...+
T Consensus 154 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~~~~~ 219 (372)
T PRK14286 154 VDCNGSGASKG-SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------------SNPCKTCGGQGLQEKRR 219 (372)
T ss_pred CCCcCCCcCCC-CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------------cccCCCCCCCcEEecce
Confidence 45677665422 3346899999999642 1 236899999999875 56799999999876532
Q ss_pred CC----------------------CCC--CCCCeE------------------------------------EE--EeEEE
Q 019801 123 DR----------------------CPQ--CKGDKV------------------------------------VQ--EKKVL 140 (335)
Q Consensus 123 ~~----------------------C~~--C~G~g~------------------------------------~~--~~~~l 140 (335)
.. ... -.|.-+ +. ..+.+
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i 299 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKA 299 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEE
Confidence 22 111 111111 10 12468
Q ss_pred EEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccce
Q 019801 141 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLF 191 (335)
Q Consensus 141 ~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~ 191 (335)
+|+||+|+++|++++|+|+|.+..+ ...|||||+|+|..+..++.+...|+
T Consensus 300 ~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred EEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999998543 45799999999998876655544433
No 57
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.3e-11 Score=118.99 Aligned_cols=145 Identities=20% Similarity=0.392 Sum_probs=98.1
Q ss_pred CCCceEEEEE-EeeehheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccce
Q 019801 35 RGEDVVHPLK-VSLEDLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQ 103 (335)
Q Consensus 35 ~g~di~~~l~-vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~ 103 (335)
.|....+.+. ...-+.++|............|+.|+|+|... + ...+|..|+|.|..+
T Consensus 128 ~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------- 196 (371)
T PRK14292 128 AGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII----------- 196 (371)
T ss_pred CCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------
Confidence 4544443433 12345677877654444467899999999653 2 125899999999864
Q ss_pred eceecCCCCCceeEEEcCcCC-----CCC---------------------------------------------------
Q 019801 104 QMQHPCNECKGTGETINDKDR-----CPQ--------------------------------------------------- 127 (335)
Q Consensus 104 q~~~~C~~C~G~G~~~~~~~~-----C~~--------------------------------------------------- 127 (335)
..+|+.|.|+|.+...+.. -..
T Consensus 197 --~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~e 274 (371)
T PRK14292 197 --TDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAK 274 (371)
T ss_pred --CCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHH
Confidence 5789999999987543222 000
Q ss_pred -CCCCe-EEE-EeEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCcccccccccee
Q 019801 128 -CKGDK-VVQ-EKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFY 192 (335)
Q Consensus 128 -C~G~g-~~~-~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL~~ 192 (335)
..|.. .+. -....+|.||+|+++|++++|+|+|++.+ +..+|||||+|++..|+.|+.+...|+-
T Consensus 275 Al~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 275 AALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred HhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 00111 111 01234799999999999999999999865 4568999999999999877766655443
No 58
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.7e-11 Score=119.49 Aligned_cols=125 Identities=20% Similarity=0.368 Sum_probs=87.0
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..|+|...+-. ....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 167 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 231 (397)
T PRK14281 167 KECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------KDRCPACYGEGIK 231 (397)
T ss_pred CCCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------CCCCCCCCCCccE
Confidence 45677665432 456899999999642 1 135899999999875 5689999999987
Q ss_pred EcCcCC---------------------C-CC--------------------------------------CCCCeEEEE-e
Q 019801 119 INDKDR---------------------C-PQ--------------------------------------CKGDKVVQE-K 137 (335)
Q Consensus 119 ~~~~~~---------------------C-~~--------------------------------------C~G~g~~~~-~ 137 (335)
...+.. . .. +.+...+.. .
T Consensus 232 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 311 (397)
T PRK14281 232 QGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLD 311 (397)
T ss_pred ecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCC
Confidence 653222 0 00 001111111 2
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccc
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGE 188 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~ 188 (335)
..++|+||+|+++|++++|+|+|.+.++ ...|||||+|+|.-+..++.+..
T Consensus 312 g~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk 363 (397)
T PRK14281 312 GAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDK 363 (397)
T ss_pred ccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence 4489999999999999999999998543 45799999999997765544433
No 59
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=5.1e-11 Score=116.76 Aligned_cols=128 Identities=25% Similarity=0.472 Sum_probs=87.6
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..|.|.... .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 147 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (376)
T PRK14280 147 DTCHGSGAK-PGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCCCCcccC-CCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------------cCCCCCCCCceEE
Confidence 456776654 223456799999999642 1 135899999999865 5679999999987
Q ss_pred EcCcCC----------------------CC--CCCC-----------------------------------Ce-EEE-Ee
Q 019801 119 INDKDR----------------------CP--QCKG-----------------------------------DK-VVQ-EK 137 (335)
Q Consensus 119 ~~~~~~----------------------C~--~C~G-----------------------------------~g-~~~-~~ 137 (335)
...+.. .. .-.| .. .+. -.
T Consensus 213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 292 (376)
T PRK14280 213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292 (376)
T ss_pred EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence 543222 00 0111 11 111 11
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCccccccccc
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDL 190 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL 190 (335)
..++|+||+|+++|++++|+|+|.+.. +...|||||+|+|..+..++.+...|
T Consensus 293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~ 346 (376)
T PRK14280 293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKEL 346 (376)
T ss_pred ceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 358999999999999999999999854 34679999999999876555444333
No 60
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.2e-11 Score=119.53 Aligned_cols=129 Identities=25% Similarity=0.465 Sum_probs=87.8
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
+.|+|...+-. .....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 150 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~ 215 (380)
T PRK14276 150 HTCNGSGAKPG-TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------------KEPCQTCHGTGHE 215 (380)
T ss_pred CCCcCcccCCC-CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------------cCCCCCCCCceEE
Confidence 45677765422 3346899999999642 1 135899999999865 5679999999986
Q ss_pred EcCcCC----------------------CC--CCCCCeE------------------------------------EE-Ee
Q 019801 119 INDKDR----------------------CP--QCKGDKV------------------------------------VQ-EK 137 (335)
Q Consensus 119 ~~~~~~----------------------C~--~C~G~g~------------------------------------~~-~~ 137 (335)
...+.. .. .-.|.-+ +. -.
T Consensus 216 ~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld 295 (380)
T PRK14276 216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295 (380)
T ss_pred EEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCC
Confidence 532222 00 0011111 11 11
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccccce
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLF 191 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~dL~ 191 (335)
..++|+||+|+++|++++|+|+|++.++ ..+|||||+|+|..+..++.+...|+
T Consensus 296 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l 350 (380)
T PRK14276 296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL 350 (380)
T ss_pred CcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 3479999999999999999999998653 46799999999998876554444333
No 61
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=3.9e-11 Score=117.77 Aligned_cols=126 Identities=24% Similarity=0.464 Sum_probs=85.6
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|..|+|.|.+
T Consensus 152 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 217 (380)
T PRK14297 152 ETCNGTGAK-PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------------EDPCNKCHGKGKV 217 (380)
T ss_pred CCccccccc-CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------------CCCCCCCCCCeEE
Confidence 456776654 222356899999999642 2 236899999999865 5689999999965
Q ss_pred EcCcCC-----CCCC------------------------------------------------------CCCeE-EEE-e
Q 019801 119 INDKDR-----CPQC------------------------------------------------------KGDKV-VQE-K 137 (335)
Q Consensus 119 ~~~~~~-----C~~C------------------------------------------------------~G~g~-~~~-~ 137 (335)
...+.. -..- .|..+ +.. .
T Consensus 218 ~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 297 (380)
T PRK14297 218 RKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297 (380)
T ss_pred EeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCC
Confidence 432111 0000 01111 111 1
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCCccccccc
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGE 188 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~~f~R~g~ 188 (335)
..++|.||+|+++|++++|+|+|.+..+ ...|||||+|+|.-+..++.+..
T Consensus 298 g~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~ 349 (380)
T PRK14297 298 GEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQK 349 (380)
T ss_pred CcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHH
Confidence 4589999999999999999999998543 46799999999998765544443
No 62
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=5.3e-11 Score=116.40 Aligned_cols=130 Identities=20% Similarity=0.428 Sum_probs=87.9
Q ss_pred eehheeceeeEeecceeeEcCCCCCCCCCC-----C-----CcccCCCCCcccEEEEEEecCCccceeceecCCCCCcee
Q 019801 47 LEDLYLGTSKKLSLSRNVICSKCSGKGSKS-----G-----ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 47 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
+-..|+|...+-. .....|+.|+|+|... + ...+|+.|+|+|.++ ...|+.|+|.|
T Consensus 151 ~C~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------------~~~C~~C~G~g 216 (372)
T PRK14296 151 NCSKCFGSGAESN-SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------------KNKCKNCKGKG 216 (372)
T ss_pred ccCCCCCCccCCC-CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------------cccccCCCCce
Confidence 3456777765422 3356799999999753 1 125899999999875 57799999999
Q ss_pred EEEcCcCC----------------------CCC---------------------------------------CCCCeEEE
Q 019801 117 ETINDKDR----------------------CPQ---------------------------------------CKGDKVVQ 135 (335)
Q Consensus 117 ~~~~~~~~----------------------C~~---------------------------------------C~G~g~~~ 135 (335)
.+...+.. ... |.+.-.+.
T Consensus 217 ~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~ 296 (372)
T PRK14296 217 KYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIK 296 (372)
T ss_pred EEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEee
Confidence 76542222 000 00010111
Q ss_pred E-eEEEEEEEecCCcCCcEEEecCCCCCCC--CCCcccEEEEEEEecCCccccccccc
Q 019801 136 E-KKVLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGEDL 190 (335)
Q Consensus 136 ~-~~~l~V~Ip~G~~~G~~i~~~G~G~~~~--~~~~GDL~v~i~v~~h~~f~R~g~dL 190 (335)
. ...++|+||+++++|++++|+|+|++.. ....|||||+|+|.-+..++.+...|
T Consensus 297 tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 354 (372)
T PRK14296 297 TLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKEL 354 (372)
T ss_pred CCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 0 1348999999999999999999999732 23579999999999876655444333
No 63
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.14 E-value=1.6e-10 Score=114.59 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=83.9
Q ss_pred ehheeceeeEeecceeeEcCCCCCCCCCC-----C-----CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeE
Q 019801 48 EDLYLGTSKKLSLSRNVICSKCSGKGSKS-----G-----ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 117 (335)
Q Consensus 48 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~ 117 (335)
-..|+|...+ -.....|+.|+|+|... + ...+|+.|+|+|.++. ...+|+.|+|.|.
T Consensus 153 C~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~-----------~~~~C~~C~G~g~ 219 (421)
T PTZ00037 153 CANCEGHGGP--KDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP-----------ESKKCKNCSGKGV 219 (421)
T ss_pred ccccCCCCCC--CCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc-----------ccccCCcCCCcce
Confidence 3567777653 22457899999999631 1 2358999999998752 2468999999998
Q ss_pred EEcCcCC-----CCCCC------------------------------------------------------CCeEEE--E
Q 019801 118 TINDKDR-----CPQCK------------------------------------------------------GDKVVQ--E 136 (335)
Q Consensus 118 ~~~~~~~-----C~~C~------------------------------------------------------G~g~~~--~ 136 (335)
+...+.. -..-. +.-.+. .
T Consensus 220 v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLd 299 (421)
T PTZ00037 220 KKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLD 299 (421)
T ss_pred eeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCC
Confidence 7643222 00000 111111 1
Q ss_pred eEEEEEEEecC--CcCCcEEEecCCCCCCCC--CCcccEEEEEEEecC
Q 019801 137 KKVLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH 180 (335)
Q Consensus 137 ~~~l~V~Ip~G--~~~G~~i~~~G~G~~~~~--~~~GDL~v~i~v~~h 180 (335)
.+.|+|+||+| +++|++++|+|+|++..+ ...|||||+|+|.-+
T Consensus 300 G~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P 347 (421)
T PTZ00037 300 GRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP 347 (421)
T ss_pred CCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcC
Confidence 25689999999 999999999999998543 357999999999977
No 64
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=7.7e-11 Score=115.91 Aligned_cols=130 Identities=22% Similarity=0.392 Sum_probs=87.6
Q ss_pred EEEEeee---hheeceeeEeecceeeEcCCCCCCCCCC-------CC---cccCCCCCcccEEEEEEecCCccceeceec
Q 019801 42 PLKVSLE---DLYLGTSKKLSLSRNVICSKCSGKGSKS-------GA---SMKCSGCQGTGMKVSIRHLGPSMIQQMQHP 108 (335)
Q Consensus 42 ~l~vtle---e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~ 108 (335)
++.++.. ..+.|.... .-.....|+.|+|+|... +. ..+|+.|+|+|.++ ...
T Consensus 148 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~ 213 (386)
T PRK14289 148 KFKVKKYVPCSHCHGTGAE-GNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------KKK 213 (386)
T ss_pred EEEEEeecccCCCCCCCCC-CCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------CcC
Confidence 4444434 345665544 223457899999999753 21 35899999999864 567
Q ss_pred CCCCCceeEEEcCcCC----------------------CCC--------------------------------------C
Q 019801 109 CNECKGTGETINDKDR----------------------CPQ--------------------------------------C 128 (335)
Q Consensus 109 C~~C~G~G~~~~~~~~----------------------C~~--------------------------------------C 128 (335)
|+.|+|+|.+...+.. ... +
T Consensus 214 C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~ 293 (386)
T PRK14289 214 CKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAAL 293 (386)
T ss_pred CCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhC
Confidence 9999999987543222 000 0
Q ss_pred CCCeEEEE-eEEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCcccc
Q 019801 129 KGDKVVQE-KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKR 185 (335)
Q Consensus 129 ~G~g~~~~-~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R 185 (335)
.+...+.. ...++|.||+|+++|++++|+|+|.+.+ +..+|||||+|+++-+..++.
T Consensus 294 G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~ 352 (386)
T PRK14289 294 GGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSK 352 (386)
T ss_pred CCeEEeecCCceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCH
Confidence 01111111 2458999999999999999999999864 346899999999997754443
No 65
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=1.8e-10 Score=113.21 Aligned_cols=118 Identities=26% Similarity=0.491 Sum_probs=82.3
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCCC------CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKSG------ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
..|+|...+ .-.....|+.|+|+|.... ...+|+.|+|+|. + ...|+.|+|.|.+...+
T Consensus 160 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~-------------~~~C~~C~G~g~v~~~~ 224 (382)
T PRK14291 160 EACGGTGYD-PGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-L-------------REPCSKCNGRGLVIKKE 224 (382)
T ss_pred CCCccccCC-CCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-E-------------ccCCCCCCCCceEEeee
Confidence 446676654 2234567999999996431 2368999999994 2 46799999999775432
Q ss_pred CC-----CCCC------------------------------------------------------CCCeE-EE--EeEEE
Q 019801 123 DR-----CPQC------------------------------------------------------KGDKV-VQ--EKKVL 140 (335)
Q Consensus 123 ~~-----C~~C------------------------------------------------------~G~g~-~~--~~~~l 140 (335)
.. -..- .|..+ +. ..+.+
T Consensus 225 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l 304 (382)
T PRK14291 225 TIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKE 304 (382)
T ss_pred EEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEE
Confidence 22 0000 01111 11 12468
Q ss_pred EEEEecCCcCCcEEEecCCCCCCCC-CCcccEEEEEEEecCC
Q 019801 141 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 181 (335)
Q Consensus 141 ~V~Ip~G~~~G~~i~~~G~G~~~~~-~~~GDL~v~i~v~~h~ 181 (335)
+|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|.-+.
T Consensus 305 ~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 305 KVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 9999999999999999999998654 4689999999999775
No 66
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=2.4e-10 Score=112.07 Aligned_cols=128 Identities=24% Similarity=0.436 Sum_probs=87.3
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..++|....- -.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|..|+|+|.+
T Consensus 150 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 215 (378)
T PRK14283 150 PVCNGSRAEP-GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------------EKPCSNCHGKGVV 215 (378)
T ss_pred CCCCccccCC-CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------------CCCCCCCCCceee
Confidence 4567776542 23346799999999742 1 136899999999864 5779999999986
Q ss_pred EcCcCC----------------------CCC--CC-----------------------------------CCe-EEE-Ee
Q 019801 119 INDKDR----------------------CPQ--CK-----------------------------------GDK-VVQ-EK 137 (335)
Q Consensus 119 ~~~~~~----------------------C~~--C~-----------------------------------G~g-~~~-~~ 137 (335)
...+.. ... =. |.. .+. -.
T Consensus 216 ~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tld 295 (378)
T PRK14283 216 RETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTID 295 (378)
T ss_pred ccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCC
Confidence 542222 000 00 111 111 12
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCC-CCCcccEEEEEEEecCCccccccccc
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDL 190 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~~~GDL~v~i~v~~h~~f~R~g~dL 190 (335)
..++|.||+|+++|++++|+|+|.+.. +...|||||+|++.-+...+.+...|
T Consensus 296 G~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~l 349 (378)
T PRK14283 296 GPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKEL 349 (378)
T ss_pred ceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHH
Confidence 368999999999999999999999854 34679999999999776544444333
No 67
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=1.1e-09 Score=103.83 Aligned_cols=82 Identities=27% Similarity=0.362 Sum_probs=69.5
Q ss_pred cccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCC
Q 019801 168 TGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF 247 (335)
Q Consensus 168 ~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~ 247 (335)
+||++..+. .+.|+|+||++++.|||.||++|+++.| +++|+.+.|+|||| +++|++++++|+|++.
T Consensus 115 ~g~~~~~~~-----~~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~----- 181 (291)
T PRK14299 115 FGDLFGSVG-----RRARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG----- 181 (291)
T ss_pred ccccccccc-----CCCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-----
Confidence 356654322 2457899999999999999999999998 78998899999999 8999999999999862
Q ss_pred CCCcEEEEEEEECCCCC
Q 019801 248 MKGKLYIHFTVEFPDSL 264 (335)
Q Consensus 248 ~~GdL~i~~~V~~P~~l 264 (335)
|||||+|+|.-++.+
T Consensus 182 --GDL~v~i~v~~h~~f 196 (291)
T PRK14299 182 --GDLYLVVRLLPHPVF 196 (291)
T ss_pred --CCEEEEEEEcCCCCe
Confidence 999999999866553
No 68
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.86 E-value=4.9e-09 Score=84.81 Aligned_cols=60 Identities=28% Similarity=0.663 Sum_probs=49.9
Q ss_pred eeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEE
Q 019801 63 NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQE 136 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~ 136 (335)
.+.|..|+|+|.. +|+.|+|+|.+...+ ++ +++++.+|+.|+|+|+. .|+.|+|++++..
T Consensus 41 ~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 5789999999973 899999999987543 33 35678999999999974 4999999998764
No 69
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.77 E-value=1.8e-08 Score=96.19 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=62.9
Q ss_pred cccccceecccCCHHHHhcCCEEEE----ecCC--C-------CEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCc
Q 019801 185 RKGEDLFYEHTLSLTEALCGFQFAL----THLD--G-------RQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGK 251 (335)
Q Consensus 185 R~g~dL~~~~~Isl~eAl~G~~~~i----~tld--G-------~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~Gd 251 (335)
+++.||++++.|||.||+.|+...| ++++ | +.+.|+|||| +++|++++++|+|+|.. +...+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~-~~~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGE-NGGPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCC-CCCCCcc
Confidence 5689999999999999999995444 5555 3 4689999999 89999999999999965 3456899
Q ss_pred EEEEEEEECCCC
Q 019801 252 LYIHFTVEFPDS 263 (335)
Q Consensus 252 L~i~~~V~~P~~ 263 (335)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999998 755
No 70
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.61 E-value=5.2e-08 Score=74.83 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=36.5
Q ss_pred EEEEEEEecCCcCCcEEEecCCCCCCC-C-CCcccEEEEEEEecCCcccc
Q 019801 138 KVLEVIVEKGMQNGQKITFPGEADEAP-D-TVTGDIVFVLQQKEHPKFKR 185 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~-~~~GDL~v~i~v~~h~~f~R 185 (335)
+.++|.||+|+++|+.++++|+|.+.. + ...|||||++++.-+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 467899999999999999999999743 3 36999999999997766553
No 71
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.6e-07 Score=85.14 Aligned_cols=105 Identities=38% Similarity=0.692 Sum_probs=95.3
Q ss_pred EeEEEEEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccccceec--ccCCHHHHhcCCEEEEecCC
Q 019801 136 EKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYE--HTLSLTEALCGFQFALTHLD 213 (335)
Q Consensus 136 ~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~--~~Isl~eAl~G~~~~i~tld 213 (335)
....+.+.+.++++.|+.+.+..+|+..++..|-++++++..++|..|.|.+++|... ..|++.+|++|....+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~ 277 (306)
T KOG0714|consen 198 RSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLD 277 (306)
T ss_pred ccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeeccc
Confidence 4567889999999999999999999988888899999999999999999999999999 99999999999999999999
Q ss_pred CCEEEEEeCCC-ccccCCcEEEEccCCCCC
Q 019801 214 GRQLLIKSNPG-EVVKPDSYKAINEEGMPL 242 (335)
Q Consensus 214 G~~l~i~ip~g-~v~~~g~~~~i~g~Gmp~ 242 (335)
++.+.+ +.. .++.++...+++++|||.
T Consensus 278 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 278 GRSYSL--SINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred CccccC--cccccccCCCceeeecCCCCCC
Confidence 986554 444 678999999999999985
No 72
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.7e-07 Score=84.66 Aligned_cols=107 Identities=21% Similarity=0.493 Sum_probs=80.5
Q ss_pred eEcCCCCCCCCCC-------C---C-cccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCC--------
Q 019801 64 VICSKCSGKGSKS-------G---A-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR-------- 124 (335)
Q Consensus 64 ~~C~~C~G~G~~~-------~---~-~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~-------- 124 (335)
..|+.|.|+|... + . ...|..|+|+|..+ .....|+.|.|++.+-..+..
T Consensus 144 ~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~-----------~~kd~C~~C~G~~~v~~kkil~v~V~~g~ 212 (337)
T KOG0712|consen 144 PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI-----------SLKDRCKTCSGAKVVREKKILEVHVEPGM 212 (337)
T ss_pred CCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc-----------cccccCcccccchhhhhhheeeccccCCC
Confidence 3799999999864 1 1 25799999999864 247889999999876542222
Q ss_pred ---------------------------------------------------CCCCCCCeEEE--EeEEEEEEEecC--Cc
Q 019801 125 ---------------------------------------------------CPQCKGDKVVQ--EKKVLEVIVEKG--MQ 149 (335)
Q Consensus 125 ---------------------------------------------------C~~C~G~g~~~--~~~~l~V~Ip~G--~~ 149 (335)
=..|.+..+.. +.+.|++.++|| +.
T Consensus 213 ~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~ 292 (337)
T KOG0712|consen 213 PHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVIS 292 (337)
T ss_pred cccceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeC
Confidence 01122333322 347899999999 99
Q ss_pred CCcEEEecCCCCCCCCCCcccEEEEEEEecCC
Q 019801 150 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHP 181 (335)
Q Consensus 150 ~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~ 181 (335)
+|+++++.|+|++..+...|||||.++|+-++
T Consensus 293 ~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 293 PGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred hhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 99999999999997655699999999999776
No 73
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.31 E-value=1e-06 Score=77.81 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=46.9
Q ss_pred eecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEec
Q 019801 106 QHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFP 157 (335)
Q Consensus 106 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 157 (335)
+.+|+.|+|+|+++...++|+.|+|.|.+..++.+.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 578999999999998778999999999999999999999 999999999875
No 74
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.65 E-value=2.6e-05 Score=78.47 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=22.3
Q ss_pred ccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCC----HHHHHHHHHHCCCCC
Q 019801 227 VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLT----PDQVKALEAILPSRP 280 (335)
Q Consensus 227 ~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~----~~~~~~l~~~l~~~~ 280 (335)
|++|+++.|-|+=- ...|+|-|++ .-=+.|+ .+-+..+++.|..+.
T Consensus 259 IevGdiV~ViG~V~------~r~g~lQiE~--~~me~L~G~ea~eVr~rid~ald~~A 308 (715)
T COG1107 259 IEVGDIVEVIGEVT------RRDGRLQIEI--EAMEKLTGDEAAEVRKRIDEALDRRA 308 (715)
T ss_pred CCCCceEEEEEEEe------ecCCcEEEee--hhhHHhhCchHHHHHHHHHHHHhhcc
Confidence 34555555555411 1246654443 2223354 334666777776544
No 75
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.62 E-value=1.7e-05 Score=58.52 Aligned_cols=44 Identities=36% Similarity=0.981 Sum_probs=30.7
Q ss_pred ceeeEcCCCCCCCCCC-------C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCcee
Q 019801 61 SRNVICSKCSGKGSKS-------G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 61 ~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
.....|+.|+|+|... . ...+|+.|+|+|.++ ...+|+.|+|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------EKDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------TSSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------CCCCCCCCCCcC
Confidence 4467899999999753 1 136899999999864 268999999986
No 76
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=8.4e-05 Score=69.80 Aligned_cols=60 Identities=35% Similarity=0.847 Sum_probs=41.6
Q ss_pred eeEcCCCCCCCCCC--------------------CCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 63 NVICSKCSGKGSKS--------------------GASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 63 ~~~C~~C~G~G~~~--------------------~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
...|+.|+|.|... ++...|..|+|+|. .+|++|.|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence 46799999998422 12244666666663 56888888885
Q ss_pred CCCCCCCCCeEEEEeEEEEEE
Q 019801 123 DRCPQCKGDKVVQEKKVLEVI 143 (335)
Q Consensus 123 ~~C~~C~G~g~~~~~~~l~V~ 143 (335)
.+|.+|.|.|.......+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 679999988877766555554
No 77
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.55 E-value=0.00032 Score=73.25 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=68.5
Q ss_pred CccccccccceecccCCHHHHhcCCEEEEec----C--CC-------CEEEEEeCCCccccCCcEEEEccCCCCCCCCCC
Q 019801 181 PKFKRKGEDLFYEHTLSLTEALCGFQFALTH----L--DG-------RQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF 247 (335)
Q Consensus 181 ~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~t----l--dG-------~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~ 247 (335)
+.|-...-||.+.+.|+|.+++.|++.+|+. + +| +.|.|+||+| ++.|++++++|+|-... +
T Consensus 650 ~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpG--VkdGqkIRf~GeGDegp---g 724 (871)
T TIGR03835 650 PNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPIT--SQLNISAIFKGFGHDFG---N 724 (871)
T ss_pred CCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCC--CCCCCEEEeccccCCCC---C
Confidence 3454556689999999999999999988832 2 22 3689999999 89999999999998642 2
Q ss_pred CCCcEEEEEEEECCCCCC--------HHHHHHHHHHCCC
Q 019801 248 MKGKLYIHFTVEFPDSLT--------PDQVKALEAILPS 278 (335)
Q Consensus 248 ~~GdL~i~~~V~~P~~l~--------~~~~~~l~~~l~~ 278 (335)
..|||||.|+|.-...+. .-.+.+.+.|+..
T Consensus 725 g~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGg 763 (871)
T TIGR03835 725 GCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGG 763 (871)
T ss_pred CCCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCC
Confidence 349999999988544432 2235555666654
No 78
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0014 Score=66.45 Aligned_cols=28 Identities=36% Similarity=0.914 Sum_probs=16.5
Q ss_pred cCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEc
Q 019801 81 KCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
+|+.|+|+|.+.. ..+|+.|.|+|++..
T Consensus 55 pc~~c~gkG~V~v------------~~~c~~c~G~gkv~~ 82 (715)
T COG1107 55 PCPKCRGKGTVTV------------YDTCPECGGTGKVLT 82 (715)
T ss_pred CCCeeccceeEEE------------EeecccCCCceeEEe
Confidence 5666666666542 355666666666543
No 79
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.70 E-value=0.0017 Score=52.67 Aligned_cols=49 Identities=33% Similarity=0.743 Sum_probs=36.7
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC----CC---cccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS----GA---SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~----~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
..++|... ..|+.|+|+|... +. ..+|+.|+|+|.. .|+.|+|+|.+.+
T Consensus 45 ~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 45 FPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------------eCCCCCCCEEEee
Confidence 44566554 2799999999742 11 3589999999952 3999999999865
No 80
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0036 Score=59.08 Aligned_cols=37 Identities=30% Similarity=0.890 Sum_probs=25.7
Q ss_pred hheeceeeEeeccee---eEcCCCCCCCCCCCCcccCCCCCcccE
Q 019801 49 DLYLGTSKKLSLSRN---VICSKCSGKGSKSGASMKCSGCQGTGM 90 (335)
Q Consensus 49 e~~~G~~~~i~~~r~---~~C~~C~G~G~~~~~~~~C~~C~G~G~ 90 (335)
-++.|-...+.+... ..|..|.|.|. ..|+.|+|.|.
T Consensus 170 ~mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~ 209 (406)
T KOG2813|consen 170 GMFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGS 209 (406)
T ss_pred CcccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCc
Confidence 344555555544433 46999999994 68999999994
No 81
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.73 E-value=0.0066 Score=53.80 Aligned_cols=30 Identities=40% Similarity=0.858 Sum_probs=19.1
Q ss_pred ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEc
Q 019801 80 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
.+|+.|+|+|.++. ...+|+.|+|+|++..
T Consensus 100 ~~C~~C~G~G~~i~-----------~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 100 CKCPRCRGTGLIQR-----------RQRECDTCAGTGRFRP 129 (186)
T ss_pred CcCCCCCCeeEEec-----------CCCCCCCCCCccEEee
Confidence 46777777776552 1256777777777654
No 82
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=85.47 E-value=0.8 Score=39.13 Aligned_cols=26 Identities=35% Similarity=1.067 Sum_probs=12.2
Q ss_pred cCCCCCceeEEEcCc-------CCCCCCCCCeE
Q 019801 108 PCNECKGTGETINDK-------DRCPQCKGDKV 133 (335)
Q Consensus 108 ~C~~C~G~G~~~~~~-------~~C~~C~G~g~ 133 (335)
+|..|+|+-+++... .+|+.|+-.|.
T Consensus 112 ~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl 144 (147)
T cd03031 112 PCSECNGSCKVFAENATAAGGFLRCPECNENGL 144 (147)
T ss_pred ECCCCCCcceEEeccCcccccEEECCCCCcccc
Confidence 355555555444332 24555554443
No 83
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=0.78 Score=42.92 Aligned_cols=51 Identities=29% Similarity=0.685 Sum_probs=30.3
Q ss_pred eEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCC
Q 019801 64 VICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 129 (335)
Q Consensus 64 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~ 129 (335)
-.|..|.|.+. .+|..|+|+=.+...- ..-+ ...+|..|+-.|.+ +|+.|.
T Consensus 230 ~~C~~CGg~rF-----lpC~~C~GS~kv~~~~-~~~~----~~~rC~~CNENGLv-----rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF-----LPCSNCHGSCKVHEEE-EDDG----GVLRCLECNENGLV-----RCPVCS 280 (281)
T ss_pred CcCCCcCCcce-----EecCCCCCceeeeeec-cCCC----cEEECcccCCCCce-----eCCccC
Confidence 45777776654 4688888876654310 0111 23568888877764 577664
No 84
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.74 E-value=1.1 Score=49.12 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=14.1
Q ss_pred EECCCC-CCHHHHHHHHHHCC
Q 019801 258 VEFPDS-LTPDQVKALEAILP 277 (335)
Q Consensus 258 V~~P~~-l~~~~~~~l~~~l~ 277 (335)
++=|.. |++..+..|.++|.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~ 875 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQ 875 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHH
Confidence 466766 88888777766664
No 85
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=0.59 Score=44.43 Aligned_cols=63 Identities=29% Similarity=0.617 Sum_probs=44.3
Q ss_pred eehheeceeeEeecceeeEcCCCCCCCCCC-----CCc-ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEc
Q 019801 47 LEDLYLGTSKKLSLSRNVICSKCSGKGSKS-----GAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 47 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
..+.+.|...+ .......|..|.|+|... ... .+|..|+|.|.+. ...|..|.|.|.+..
T Consensus 166 ~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~-------------~~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 166 DCETCFGSGAE-EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL-------------RDNCQACSGAGQVRR 231 (288)
T ss_pred ccccccCcCcc-cccccccchhhhCcccccccccCCcceeecccccccceec-------------cchHHHhhcchhhhh
Confidence 44566666644 556678999999999322 122 3699999999875 344999999996655
Q ss_pred CcC
Q 019801 121 DKD 123 (335)
Q Consensus 121 ~~~ 123 (335)
.+.
T Consensus 232 ~k~ 234 (288)
T KOG0715|consen 232 AKD 234 (288)
T ss_pred hee
Confidence 433
No 86
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=78.97 E-value=2.2 Score=45.77 Aligned_cols=34 Identities=32% Similarity=0.722 Sum_probs=21.9
Q ss_pred ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeE
Q 019801 80 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 117 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~ 117 (335)
-.|..|.|.|.+....+.-| .+-.+|+.|+|+.+
T Consensus 731 GRCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 36888888888766555444 33466777666544
No 87
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=3.5 Score=38.69 Aligned_cols=40 Identities=30% Similarity=0.800 Sum_probs=30.5
Q ss_pred ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEc---C---cCCCCCCCCCeEEE
Q 019801 80 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN---D---KDRCPQCKGDKVVQ 135 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~---~---~~~C~~C~G~g~~~ 135 (335)
..|..|.|.+++ +|..|+|.-++.. . ..+|..|+-+|.+.
T Consensus 230 ~~C~~CGg~rFl----------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL----------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE----------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 469999998763 6999999998886 1 12499998877664
No 88
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=71.08 E-value=4.3 Score=34.64 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=32.5
Q ss_pred eEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 64 VICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 64 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..|..|.|.+. .+|..|+|+=.++.....+. ....+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~~~~~----~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF-----VPCSECNGSCKVFAENATAA----GGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe-----EECCCCCCcceEEeccCccc----ccEEECCCCCccccc
Confidence 46999998775 58999999987764321111 124789999988864
No 89
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=70.62 E-value=4 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=16.4
Q ss_pred cEEEEEEEECCCC-CCHHHHHHHHHHCC
Q 019801 251 KLYIHFTVEFPDS-LTPDQVKALEAILP 277 (335)
Q Consensus 251 dL~i~~~V~~P~~-l~~~~~~~l~~~l~ 277 (335)
+||| ++=|.. |+++.+..|.++|.
T Consensus 853 ~llI---LDEPtsGLD~~~~~~L~~~L~ 877 (943)
T PRK00349 853 TLYI---LDEPTTGLHFEDIRKLLEVLH 877 (943)
T ss_pred eEEE---EECCCCCCCHHHHHHHHHHHH
Confidence 5553 467876 88888777766664
No 90
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=70.18 E-value=6.1 Score=34.36 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=45.3
Q ss_pred EEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccccc
Q 019801 141 EVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDL 190 (335)
Q Consensus 141 ~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL 190 (335)
.+.++.++..+..+++.+.+...+ ...++.+..+..++|+.|...++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 179 KSTIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred cccCCcccccCceeeecccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence 378999999999999999998766 7789999999999999999999998
No 91
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=69.57 E-value=3.2 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=18.5
Q ss_pred CcEEEEEEEECCCC-CCHHHHHHHHHHCC
Q 019801 250 GKLYIHFTVEFPDS-LTPDQVKALEAILP 277 (335)
Q Consensus 250 GdL~i~~~V~~P~~-l~~~~~~~l~~~l~ 277 (335)
..||| .+=|+. |.+.+.+.|-++|.
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHHH
Confidence 46765 467877 99988888777753
No 92
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=69.28 E-value=5.4 Score=44.73 Aligned_cols=67 Identities=16% Similarity=0.431 Sum_probs=42.2
Q ss_pred Eeeehhe--------eceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCcee
Q 019801 45 VSLEDLY--------LGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 45 vtlee~~--------~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
-++.+++ .+...++.+. ...|+.|...... ..|+.|...=. ....|+.|+..
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGae- 701 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAE- 701 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCc-
Confidence 3466777 5555556654 5789999976432 38999987721 13479999863
Q ss_pred EEEcC---cCCCCCCCCCe
Q 019801 117 ETIND---KDRCPQCKGDK 132 (335)
Q Consensus 117 ~~~~~---~~~C~~C~G~g 132 (335)
+... ...|+.|...-
T Consensus 702 -v~~des~a~~CP~CGtpl 719 (1337)
T PRK14714 702 -VPPDESGRVECPRCDVEL 719 (1337)
T ss_pred -cCCCccccccCCCCCCcc
Confidence 1111 23799998543
No 93
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=66.42 E-value=35 Score=29.65 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=15.5
Q ss_pred CEEEEecCCCCEEEEEeCCCccccCCcEEEEc
Q 019801 205 FQFALTHLDGRQLLIKSNPGEVVKPDSYKAIN 236 (335)
Q Consensus 205 ~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~ 236 (335)
+++.||-| .+.+|||. .+.|.+-.|.
T Consensus 72 a~i~IPEl-----~lei~pg~-~~~G~iTTVE 97 (163)
T TIGR00340 72 ATIRIPEL-----GIKIEPGP-ASQGYISNIE 97 (163)
T ss_pred cEEEccce-----eEEecCCC-cCCceEEehH
Confidence 45666654 46678873 2456666663
No 94
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=65.30 E-value=37 Score=29.39 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=12.7
Q ss_pred EEEEEEEecCCcCCcEEEecC
Q 019801 138 KVLEVIVEKGMQNGQKITFPG 158 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~G 158 (335)
..|.+.||||...|..-.+.|
T Consensus 80 PEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 80 PELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeeEEecCCCCCcEEEehHH
Confidence 455666667766666655544
No 95
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.70 E-value=3.6 Score=45.25 Aligned_cols=12 Identities=42% Similarity=1.113 Sum_probs=6.9
Q ss_pred cCCCCCcccEEE
Q 019801 81 KCSGCQGTGMKV 92 (335)
Q Consensus 81 ~C~~C~G~G~~~ 92 (335)
.|+.|.|.|.+.
T Consensus 738 ~C~~C~G~G~~~ 749 (924)
T TIGR00630 738 RCEACQGDGVIK 749 (924)
T ss_pred CCCCCccceEEE
Confidence 366666666554
No 96
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=61.45 E-value=24 Score=31.50 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=21.6
Q ss_pred cCCCCCcccEEEEEEec-CC--ccceeceecCCCCCcee
Q 019801 81 KCSGCQGTGMKVSIRHL-GP--SMIQQMQHPCNECKGTG 116 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~-gp--g~~~q~~~~C~~C~G~G 116 (335)
.|+.|+..|........ -| +=+.-+...|++|+=+-
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~ 40 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRS 40 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCcc
Confidence 47888777765443333 33 33444667788887553
No 97
>PRK04023 DNA polymerase II large subunit; Validated
Probab=60.21 E-value=5.5 Score=43.70 Aligned_cols=66 Identities=15% Similarity=0.355 Sum_probs=43.4
Q ss_pred eeehhee-ceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCC
Q 019801 46 SLEDLYL-GTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR 124 (335)
Q Consensus 46 tlee~~~-G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~ 124 (335)
++.+++. +...++.+. ...|+.|.-.. ....|+.|+..=. ....|+.|.-... ...
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t----~~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y~ 665 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET----FYRRCPFCGTHTE--------------PVYRCPRCGIEVE----EDE 665 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC----CcccCCCCCCCCC--------------cceeCccccCcCC----CCc
Confidence 4667777 666666665 45799998764 2368999987611 1357999943332 256
Q ss_pred CCCCCCCeEE
Q 019801 125 CPQCKGDKVV 134 (335)
Q Consensus 125 C~~C~G~g~~ 134 (335)
|+.|.-.-..
T Consensus 666 CPKCG~El~~ 675 (1121)
T PRK04023 666 CEKCGREPTP 675 (1121)
T ss_pred CCCCCCCCCc
Confidence 9999865443
No 98
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=57.82 E-value=13 Score=26.18 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=20.2
Q ss_pred CCCcEEEEEEEECCCC--CCHHHHHHH
Q 019801 248 MKGKLYIHFTVEFPDS--LTPDQVKAL 272 (335)
Q Consensus 248 ~~GdL~i~~~V~~P~~--l~~~~~~~l 272 (335)
..||+-|-|+|.+|+- ||.++.+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 4699999999999997 667666554
No 99
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=54.06 E-value=8.3 Score=38.58 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=23.0
Q ss_pred ccEE-EEEEecCCccceeceecCCCCCceeEEEc
Q 019801 88 TGMK-VSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 88 ~G~~-~~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
-|.+ +..++.++.+...+..+|+.|+|+|.+..
T Consensus 371 lGLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 371 FGLVEMTRKRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred CcceEEeccccCcChHHHhcCCCCCCcCeeEEcc
Confidence 3543 33345666677777889999999998764
No 100
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=51.12 E-value=20 Score=38.47 Aligned_cols=50 Identities=20% Similarity=0.644 Sum_probs=33.8
Q ss_pred eeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCC
Q 019801 63 NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGD 131 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~ 131 (335)
...|..|.- ...|+.|... +..++. .-+..|..|+-...+ -..|+.|.+.
T Consensus 435 ~l~C~~Cg~-------v~~Cp~Cd~~---lt~H~~------~~~L~CH~Cg~~~~~---p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGY-------IAECPNCDSP---LTLHKA------TGQLRCHYCGYQEPI---PQSCPECGSE 484 (730)
T ss_pred eeecccCCC-------cccCCCCCcc---eEEecC------CCeeEeCCCCCCCCC---CCCCCCCCCC
Confidence 578999973 3689999887 111221 125679999866333 3789999876
No 101
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=49.62 E-value=35 Score=24.59 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=23.1
Q ss_pred EEEEecCCCCEEEEEeCCCccccCCcEEEEcc
Q 019801 206 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 237 (335)
Q Consensus 206 ~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g 237 (335)
...+.|-+|+.+-|.+|.+..+++|+++....
T Consensus 30 r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 30 RLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp EEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred EEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 46788899999999999999899999987654
No 102
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=41.99 E-value=21 Score=34.70 Aligned_cols=31 Identities=48% Similarity=0.939 Sum_probs=21.9
Q ss_pred ceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccc
Q 019801 61 SRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMI 102 (335)
Q Consensus 61 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~ 102 (335)
...+.|..|+|.| |+.|+++|++-. .|-||+
T Consensus 258 Evdv~~~~~~g~g--------c~~ck~~~WiEi---lG~Gmv 288 (339)
T PRK00488 258 EVDVSCFKCGGKG--------CRVCKGTGWLEI---LGCGMV 288 (339)
T ss_pred EEEEEEeccCCCc--------ccccCCCCceEE---eccCcc
Confidence 3457788899876 889999997532 355555
No 103
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=41.39 E-value=34 Score=28.29 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=12.6
Q ss_pred EEEEEEEecCCcCCcEEEec
Q 019801 138 KVLEVIVEKGMQNGQKITFP 157 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~~ 157 (335)
..+++.-+.+++.||.+.+.
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred EEEEecCCCCCCCCCEEEEE
Confidence 45556656677777766654
No 104
>PRK11712 ribonuclease G; Provisional
Probab=40.52 E-value=14 Score=37.78 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=22.5
Q ss_pred cEE-EEEEecCCccceeceecCCCCCceeEEEc
Q 019801 89 GMK-VSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 89 G~~-~~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
|.+ +..++.++.+...+..+||.|+|+|.+..
T Consensus 384 GLvEmTRkR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 384 GLVEMTRKRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred ceEEEEecccCCChHHHhcCCCCCCCCCCCcCC
Confidence 543 33345667677777788999999998764
No 105
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=40.26 E-value=9.6 Score=44.85 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=10.4
Q ss_pred CC--HHHHHHHHHHCCCC
Q 019801 264 LT--PDQVKALEAILPSR 279 (335)
Q Consensus 264 l~--~~~~~~l~~~l~~~ 279 (335)
|| +.||-+|.+.|..+
T Consensus 1700 LSGGE~qRikLa~~l~~~ 1717 (1809)
T PRK00635 1700 LSLSEKIAIKIAKFLYLP 1717 (1809)
T ss_pred cCchHHHHHHHHHHHhcC
Confidence 66 56777777777543
No 106
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=40.03 E-value=13 Score=41.11 Aligned_cols=36 Identities=33% Similarity=0.700 Sum_probs=27.2
Q ss_pred ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEE
Q 019801 80 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~ 119 (335)
-.|+.|.|.|.+....+.-+ ....+|+.|+|+....
T Consensus 739 G~C~~C~G~G~~~~~~~f~~----~~~~~C~~C~G~R~~~ 774 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLP----DVYVPCDVCKGKRYNR 774 (943)
T ss_pred CCCCcccccceEEEEeccCC----CccccCccccCccccc
Confidence 46999999999876544333 3457999999998764
No 107
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=39.69 E-value=29 Score=29.90 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=20.0
Q ss_pred cCCCCCccc-EEEEEEecCCccceeceecCCCCCc
Q 019801 81 KCSGCQGTG-MKVSIRHLGPSMIQQMQHPCNECKG 114 (335)
Q Consensus 81 ~C~~C~G~G-~~~~~~~~gpg~~~q~~~~C~~C~G 114 (335)
.||.|...- .++..+-+.+|........|+.|+.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~ 36 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGK 36 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCC
Confidence 578887766 5565666666643332355666653
No 108
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=39.65 E-value=22 Score=25.44 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=12.2
Q ss_pred EEEEeeehheeceee
Q 019801 42 PLKVSLEDLYLGTSK 56 (335)
Q Consensus 42 ~l~vtlee~~~G~~~ 56 (335)
.++++|+++.+|..+
T Consensus 30 RFeIsLeDl~~GE~V 44 (67)
T COG5216 30 RFEISLEDLRNGEVV 44 (67)
T ss_pred EeEEEHHHhhCCceE
Confidence 477999999999754
No 109
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=38.43 E-value=1.7e+02 Score=22.17 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=17.4
Q ss_pred HhcCC-EEEEecCCCCEEEEEeCC
Q 019801 201 ALCGF-QFALTHLDGRQLLIKSNP 223 (335)
Q Consensus 201 Al~G~-~~~i~tldG~~l~i~ip~ 223 (335)
+++|. -++|.+.||....+.+|.
T Consensus 8 ~~~G~n~~~V~~~dG~~~l~~iP~ 31 (78)
T cd05792 8 GSKGNNLHEVETPNGSRYLVSMPT 31 (78)
T ss_pred EcCCCcEEEEEcCCCCEEEEEech
Confidence 34554 477899999988888875
No 110
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=38.15 E-value=17 Score=33.50 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=9.6
Q ss_pred ecCCCCCceeEEEc
Q 019801 107 HPCNECKGTGETIN 120 (335)
Q Consensus 107 ~~C~~C~G~G~~~~ 120 (335)
.+||.|+|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 46777777777654
No 111
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=37.93 E-value=39 Score=29.19 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=32.3
Q ss_pred EEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC---CCCCcEEEEEEEE
Q 019801 207 FALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP---FMKGKLYIHFTVE 259 (335)
Q Consensus 207 ~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~---~~~GdL~i~~~V~ 259 (335)
+-|.|-+|-.|.|.+ | + +...|.|+|+...-.. -..||++++|.++
T Consensus 63 igi~t~~GvEiLiHi--G--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 63 IGIETDEGVEILIHI--G--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred EEEEcCCCcEEEEEe--c--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHH
Confidence 567777887777765 5 3 5778999998654222 2579999998643
No 112
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.45 E-value=33 Score=32.94 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=6.4
Q ss_pred eeEcCCCCCC
Q 019801 63 NVICSKCSGK 72 (335)
Q Consensus 63 ~~~C~~C~G~ 72 (335)
...||.|.+.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 4567777655
No 113
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=37.18 E-value=40 Score=27.33 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=5.5
Q ss_pred cCCCCCceeEE
Q 019801 108 PCNECKGTGET 118 (335)
Q Consensus 108 ~C~~C~G~G~~ 118 (335)
.||.|++....
T Consensus 88 ~CP~Cgs~~~~ 98 (113)
T PRK12380 88 QCPHCHGERLR 98 (113)
T ss_pred cCcCCCCCCcE
Confidence 35555554433
No 114
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=37.14 E-value=67 Score=22.68 Aligned_cols=11 Identities=36% Similarity=1.298 Sum_probs=7.0
Q ss_pred CCCCCCCeEEE
Q 019801 125 CPQCKGDKVVQ 135 (335)
Q Consensus 125 C~~C~G~g~~~ 135 (335)
|++|+-+-.+.
T Consensus 31 CpKCK~EtlI~ 41 (55)
T PF14205_consen 31 CPKCKQETLID 41 (55)
T ss_pred CCCCCceEEEE
Confidence 77777655443
No 115
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=35.70 E-value=27 Score=37.07 Aligned_cols=49 Identities=24% Similarity=0.720 Sum_probs=30.7
Q ss_pred eEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCC
Q 019801 64 VICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGD 131 (335)
Q Consensus 64 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~ 131 (335)
+.|+.|+-.- +....-|+.|..+-. ...|+.|+-. +......|..|.-.
T Consensus 2 ~~Cp~Cg~~n--~~~akFC~~CG~~l~---------------~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN--PNNNRFCQKCGTSLT---------------HKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC--CCCCccccccCCCCC---------------CCcCCCCCCC--CCcccccccccCCc
Confidence 4799998653 222357999944321 2479999754 33344679999754
No 116
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.35 E-value=19 Score=23.10 Aligned_cols=8 Identities=38% Similarity=1.053 Sum_probs=4.0
Q ss_pred cCCCCCcc
Q 019801 81 KCSGCQGT 88 (335)
Q Consensus 81 ~C~~C~G~ 88 (335)
+|+.|+-.
T Consensus 4 ~CP~C~~~ 11 (37)
T PF13719_consen 4 TCPNCQTR 11 (37)
T ss_pred ECCCCCce
Confidence 45555444
No 117
>PLN00208 translation initiation factor (eIF); Provisional
Probab=35.16 E-value=1.7e+02 Score=25.02 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=37.5
Q ss_pred CCEEEEecCCCCEEEEEeCCCcc-----ccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 019801 204 GFQFALTHLDGRQLLIKSNPGEV-----VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI 275 (335)
Q Consensus 204 G~~~~i~tldG~~l~i~ip~g~v-----~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 275 (335)
+..+.|...||......|| |.. |++|+++.|. +..+. ..+||++-+ ++++|...|++.
T Consensus 44 n~~~~V~c~dG~~rLa~Ip-GKmRKrIWI~~GD~VlVe---l~~~d--~~KgdIv~r--------y~~dqvr~Lkk~ 106 (145)
T PLN00208 44 NGRCEALCIDGTKRLCHIR-GKMRKKVWIAAGDIILVG---LRDYQ--DDKADVILK--------YMPDEARLLKAY 106 (145)
T ss_pred CCEEEEEECCCCEEEEEEe-ccceeeEEecCCCEEEEE---ccCCC--CCEEEEEEE--------cCHHHHHHHHHc
Confidence 3467777778877666665 432 5678888777 33331 246776544 678888888776
No 118
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=34.59 E-value=1.4e+02 Score=26.70 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=18.8
Q ss_pred EEEEEEEecCCcCCcEEEe-cCCCCCCCCCCcccEE
Q 019801 138 KVLEVIVEKGMQNGQKITF-PGEADEAPDTVTGDIV 172 (335)
Q Consensus 138 ~~l~V~Ip~G~~~G~~i~~-~G~G~~~~~~~~GDL~ 172 (335)
..+++.|..=...|.-+.- .+.--..++..|||.+
T Consensus 149 e~~~v~Ie~l~~~G~GVak~~g~~vfV~galpGE~V 184 (201)
T PRK12336 149 KTYEVEITGTGRKGDGVAKKGKYTIFVPGAKKGEVV 184 (201)
T ss_pred CEEEEEEEEccCCCceEEEECCEEEEeCCCCCCCEE
Confidence 3456666665566665542 2211124667788875
No 119
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=33.89 E-value=22 Score=38.62 Aligned_cols=36 Identities=22% Similarity=0.568 Sum_probs=26.6
Q ss_pred Eeeccee-eEcCCCCCCCCCC-------CCcccCCCCCcccEEE
Q 019801 57 KLSLSRN-VICSKCSGKGSKS-------GASMKCSGCQGTGMKV 92 (335)
Q Consensus 57 ~i~~~r~-~~C~~C~G~G~~~-------~~~~~C~~C~G~G~~~ 92 (335)
.++++.+ -.|..|+|.|... .-..+|..|+|+-+--
T Consensus 723 rFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 723 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred cccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccccc
Confidence 4566655 6799999999743 2347999999997643
No 120
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=33.07 E-value=58 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q 019801 255 HFTVEFPDSLTPDQVKALEAIL 276 (335)
Q Consensus 255 ~~~V~~P~~l~~~~~~~l~~~l 276 (335)
..+..||.+||+++|..+-.+.
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la 38 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLA 38 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999998876654
No 121
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=32.88 E-value=56 Score=22.52 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=7.4
Q ss_pred cCCCCCcccEEE
Q 019801 81 KCSGCQGTGMKV 92 (335)
Q Consensus 81 ~C~~C~G~G~~~ 92 (335)
+|+.|.|....+
T Consensus 3 PCPfCGg~~~~~ 14 (53)
T TIGR03655 3 PCPFCGGADVYL 14 (53)
T ss_pred CCCCCCCcceee
Confidence 577776666533
No 122
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=32.06 E-value=19 Score=33.28 Aligned_cols=14 Identities=43% Similarity=0.871 Sum_probs=11.1
Q ss_pred ccCCCCCcccEEEE
Q 019801 80 MKCSGCQGTGMKVS 93 (335)
Q Consensus 80 ~~C~~C~G~G~~~~ 93 (335)
.+|++|+|+|.+-+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 58999999998643
No 123
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=31.96 E-value=2.2e+02 Score=22.50 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=34.3
Q ss_pred CCEEEEecCCCCEEEEEeCCCcc-----ccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 019801 204 GFQFALTHLDGRQLLIKSNPGEV-----VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI 275 (335)
Q Consensus 204 G~~~~i~tldG~~l~i~ip~g~v-----~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 275 (335)
+..+.|...||..+...+| |.. |++|+.+.|. |..-....+|+++-+ ++++|...|++.
T Consensus 31 ~~~~~V~~~dG~~~la~i~-GK~Rk~iwI~~GD~VlVs----p~d~~~~~kg~Iv~r--------~~~~qv~~L~~~ 94 (99)
T TIGR00523 31 AGRVKVRCLDGKTRLGRIP-GKLKKRIWIREGDVVIVK----PWEFQGDDKCDIVWR--------YTKTQVEWLKRK 94 (99)
T ss_pred CCEEEEEeCCCCEEEEEEc-hhhcccEEecCCCEEEEE----EccCCCCccEEEEEE--------cCHHHHHHHHHc
Confidence 3456677778877766665 332 4667777762 321111246775544 567777777653
No 124
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.52 E-value=56 Score=26.51 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=4.8
Q ss_pred cCCCCCcee
Q 019801 108 PCNECKGTG 116 (335)
Q Consensus 108 ~C~~C~G~G 116 (335)
.||.|++..
T Consensus 88 ~CP~Cgs~~ 96 (115)
T TIGR00100 88 RCPKCHGIM 96 (115)
T ss_pred cCcCCcCCC
Confidence 455555544
No 125
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.68 E-value=45 Score=34.24 Aligned_cols=52 Identities=21% Similarity=0.614 Sum_probs=32.4
Q ss_pred eeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeE
Q 019801 63 NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKV 133 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~ 133 (335)
.+.|..|.- ...|+.|.+. .... + ......|..|+-+ ...-..|+.|.+...
T Consensus 213 ~~~C~~Cg~-------~~~C~~C~~~-l~~h--~------~~~~l~Ch~Cg~~---~~~~~~Cp~C~s~~l 264 (505)
T TIGR00595 213 NLLCRSCGY-------ILCCPNCDVS-LTYH--K------KEGKLRCHYCGYQ---EPIPKTCPQCGSEDL 264 (505)
T ss_pred eeEhhhCcC-------ccCCCCCCCc-eEEe--c------CCCeEEcCCCcCc---CCCCCCCCCCCCCee
Confidence 467888874 3579999875 2111 1 1124579999643 333378999987643
No 126
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.54 E-value=20 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.9
Q ss_pred EEEEecCCCCEEEEEeCCCc
Q 019801 206 QFALTHLDGRQLLIKSNPGE 225 (335)
Q Consensus 206 ~~~i~tldG~~l~i~ip~g~ 225 (335)
.+.++||.|+.|.|.|.|.+
T Consensus 2 ~iKvktLt~KeIeidIep~D 21 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTD 21 (70)
T ss_pred eeeEeeeccceEEEeeCcch
Confidence 47899999999999887764
No 127
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=30.10 E-value=2.4e+02 Score=21.17 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=35.6
Q ss_pred HhcCCEEEEecCCCCEEEEEeCCCcc-----ccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 019801 201 ALCGFQFALTHLDGRQLLIKSNPGEV-----VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI 275 (335)
Q Consensus 201 Al~G~~~~i~tldG~~l~i~ip~g~v-----~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 275 (335)
++-+..+.|...||..+...+| |.. +++|+.+.+. +..+ ...+|+++-+ ++++|...|++.
T Consensus 9 ~~g~~~~~V~~~~g~~~la~i~-gK~rk~iwI~~GD~V~Ve---~~~~--d~~kg~Iv~r--------~~~~~v~~L~~~ 74 (77)
T cd05793 9 MLGNGRLEVRCFDGKKRLCRIR-GKMRKRVWINEGDIVLVA---PWDF--QDDKADIIYK--------YTPDEVRWLKRK 74 (77)
T ss_pred EcCCCEEEEEECCCCEEEEEEc-hhhcccEEEcCCCEEEEE---eccc--cCCEEEEEEE--------cCHHHHHHHHHc
Confidence 3444567888888887777775 432 4556666665 2111 1235665443 567777777653
No 128
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=29.19 E-value=58 Score=28.15 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=16.5
Q ss_pred ccCCCCCcccEEEEEEecCC--ccceeceecCCCCC
Q 019801 80 MKCSGCQGTGMKVSIRHLGP--SMIQQMQHPCNECK 113 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gp--g~~~q~~~~C~~C~ 113 (335)
..|+.|+..|......-.-| +-+.-+...|++|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 35888888886433322222 22334455677775
No 129
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=28.50 E-value=19 Score=38.98 Aligned_cols=68 Identities=18% Similarity=0.441 Sum_probs=0.0
Q ss_pred eehheece--eeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCC
Q 019801 47 LEDLYLGT--SKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR 124 (335)
Q Consensus 47 lee~~~G~--~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~ 124 (335)
+.+++.-. ..++.+. ...|+.|.-... ...|+.|...=. ....|+.|.-.- ..+.
T Consensus 638 i~~A~~~~~g~i~vei~-~r~Cp~Cg~~t~----~~~Cp~CG~~T~--------------~~~~Cp~C~~~~----~~~~ 694 (900)
T PF03833_consen 638 IQKAAKKGKGTIEVEIG-RRRCPKCGKETF----YNRCPECGSHTE--------------PVYVCPDCGIEV----EEDE 694 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCeeEEeee-cccCcccCCcch----hhcCcccCCccc--------------cceecccccccc----Cccc
Confidence 33444333 2444443 356888875432 257888866532 245688886432 2358
Q ss_pred CCCCCCCeEEEEe
Q 019801 125 CPQCKGDKVVQEK 137 (335)
Q Consensus 125 C~~C~G~g~~~~~ 137 (335)
|+.|.-.......
T Consensus 695 C~~C~~~~~~~~~ 707 (900)
T PF03833_consen 695 CPKCGRETTSYSK 707 (900)
T ss_dssp -------------
T ss_pred cccccccCcccce
Confidence 9999866444333
No 130
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=28.45 E-value=13 Score=29.21 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=6.6
Q ss_pred ecCCCCCceeEE
Q 019801 107 HPCNECKGTGET 118 (335)
Q Consensus 107 ~~C~~C~G~G~~ 118 (335)
..|..|.|.|..
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 456666665543
No 131
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=28.34 E-value=37 Score=22.37 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=6.0
Q ss_pred eeeEcCCCCCCCC
Q 019801 62 RNVICSKCSGKGS 74 (335)
Q Consensus 62 r~~~C~~C~G~G~ 74 (335)
+...||.|.|+..
T Consensus 2 ~h~pCP~CGG~Dr 14 (40)
T PF08273_consen 2 KHGPCPICGGKDR 14 (40)
T ss_dssp EEE--TTTT-TTT
T ss_pred CCCCCCCCcCccc
Confidence 3456777766654
No 132
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=27.25 E-value=45 Score=31.27 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=25.5
Q ss_pred ecccCCHHHHhcC-CEEEEecCCCCEEEEEeCC
Q 019801 192 YEHTLSLTEALCG-FQFALTHLDGRQLLIKSNP 223 (335)
Q Consensus 192 ~~~~Isl~eAl~G-~~~~i~tldG~~l~i~ip~ 223 (335)
+...|-|+||++| +..+|+|.|+.+=.+.|.|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 3467899999999 6899999999765565544
No 133
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=27.02 E-value=60 Score=20.35 Aligned_cols=12 Identities=50% Similarity=1.093 Sum_probs=6.8
Q ss_pred ccCCCCCcccEE
Q 019801 80 MKCSGCQGTGMK 91 (335)
Q Consensus 80 ~~C~~C~G~G~~ 91 (335)
..|+.|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 346666666644
No 134
>PRK05580 primosome assembly protein PriA; Validated
Probab=26.77 E-value=53 Score=35.04 Aligned_cols=63 Identities=22% Similarity=0.566 Sum_probs=37.4
Q ss_pred eceeeEeecce-----eeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCC
Q 019801 52 LGTSKKLSLSR-----NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126 (335)
Q Consensus 52 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~ 126 (335)
.|...=+-++| .+.|..|.- ...|+.|.+. .... . ......|..|+-+-. ....|+
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~-------~~~C~~C~~~-l~~h--~------~~~~l~Ch~Cg~~~~---~~~~Cp 425 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGW-------VAECPHCDAS-LTLH--R------FQRRLRCHHCGYQEP---IPKACP 425 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcC-------ccCCCCCCCc-eeEE--C------CCCeEECCCCcCCCC---CCCCCC
Confidence 34444444444 578888874 3579999884 2221 1 112456999974432 236899
Q ss_pred CCCCCeE
Q 019801 127 QCKGDKV 133 (335)
Q Consensus 127 ~C~G~g~ 133 (335)
.|.+...
T Consensus 426 ~Cg~~~l 432 (679)
T PRK05580 426 ECGSTDL 432 (679)
T ss_pred CCcCCee
Confidence 9987643
No 135
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=26.48 E-value=92 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=22.2
Q ss_pred EEEEEEEECCCC-CCHHHHHHHHHHCCC
Q 019801 252 LYIHFTVEFPDS-LTPDQVKALEAILPS 278 (335)
Q Consensus 252 L~i~~~V~~P~~-l~~~~~~~l~~~l~~ 278 (335)
.+.-++|+.|.. ||++|+.-|+.|...
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 577788999965 999999999888653
No 136
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=26.35 E-value=2.8e+02 Score=20.83 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=35.2
Q ss_pred HhcCCEEEEecCCCCEEEEEeCCCcc-----ccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 019801 201 ALCGFQFALTHLDGRQLLIKSNPGEV-----VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI 275 (335)
Q Consensus 201 Al~G~~~~i~tldG~~l~i~ip~g~v-----~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 275 (335)
+|-+..+.|...||..+...+| |.. |++|+.+.|. +-.+ ....+||++-. ++++|.+.|++.
T Consensus 9 ~lG~~~~~V~~~dg~~~l~~i~-gK~Rk~iwI~~GD~VlV~---~~~~-~~~~kg~Iv~r--------~~~~~vk~L~k~ 75 (78)
T cd04456 9 MLGNNRHEVECADGQRRLVSIP-GKLRKNIWIKRGDFLIVD---PIEE-GEDVKADIIFV--------YCKDHVRSLKKE 75 (78)
T ss_pred ECCCCEEEEEECCCCEEEEEEc-hhhccCEEEcCCCEEEEE---eccc-CCCceEEEEEE--------eCHHHHHHHHHc
Confidence 3334567888899988877776 331 4556665553 1111 01235554433 567777777653
No 137
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=26.23 E-value=68 Score=31.41 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=12.2
Q ss_pred CCCcccEEEEEEEecCC
Q 019801 165 DTVTGDIVFVLQQKEHP 181 (335)
Q Consensus 165 ~~~~GDL~v~i~v~~h~ 181 (335)
|+.-||+||+....-+.
T Consensus 39 GG~GGsV~~~ad~~l~T 55 (369)
T COG0536 39 GGRGGSVIFEADENLNT 55 (369)
T ss_pred CCCCceEEEEEcCCccc
Confidence 45679999998765543
No 138
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=26.18 E-value=1.1e+02 Score=23.86 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=18.3
Q ss_pred EEEEEEEECCCCCCHHHHHHHHH
Q 019801 252 LYIHFTVEFPDSLTPDQVKALEA 274 (335)
Q Consensus 252 L~i~~~V~~P~~l~~~~~~~l~~ 274 (335)
.+|++.|.+|..+++++.+.|+.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a 25 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKA 25 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHH
Confidence 36899999999999987666543
No 139
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.17 E-value=61 Score=31.12 Aligned_cols=9 Identities=22% Similarity=0.962 Sum_probs=6.0
Q ss_pred eEcCCCCCC
Q 019801 64 VICSKCSGK 72 (335)
Q Consensus 64 ~~C~~C~G~ 72 (335)
..||.|.+.
T Consensus 185 ~~CPvCGs~ 193 (305)
T TIGR01562 185 TLCPACGSP 193 (305)
T ss_pred CcCCCCCCh
Confidence 467777654
No 140
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=26.08 E-value=1.5e+02 Score=24.38 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=30.8
Q ss_pred CEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCC---CCCcEEEEEE
Q 019801 205 FQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF---MKGKLYIHFT 257 (335)
Q Consensus 205 ~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~---~~GdL~i~~~ 257 (335)
--+-|.+-+|-.+.|.+ | + +...+.|+|+...-..+ .+||++++|.
T Consensus 54 HA~gi~~~~G~evLiHi--G--i---dTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 54 HAFGIESDSGVEILIHI--G--I---DTVKLNGEGFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred CEEEEEeCCCcEEEEEe--e--e---ceeecCCCceEEEecCCCEEcCCCEEEEEc
Confidence 34567777887777665 4 2 45678888886542222 5799999986
No 141
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=25.86 E-value=2.9e+02 Score=23.82 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=34.5
Q ss_pred CEEEEecCCCCEEEEEeCCCcc-----ccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 019801 205 FQFALTHLDGRQLLIKSNPGEV-----VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI 275 (335)
Q Consensus 205 ~~~~i~tldG~~l~i~ip~g~v-----~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 275 (335)
..+.|...||..+...|| |.. |.+|+++.|. +..+. -.+|+++-+ ++++|...|++.
T Consensus 45 ~~f~V~c~dG~~rLa~I~-GKmRK~IWI~~GD~VlVe---l~~yd--~~KgdIi~R--------y~~devr~Lk~~ 106 (155)
T PTZ00329 45 GRLEAYCFDGVKRLCHIR-GKMRKRVWINIGDIILVS---LRDFQ--DSKADVILK--------YTPDEARALKQH 106 (155)
T ss_pred CEEEEEECCCCEEEEEee-ccceeeEEecCCCEEEEe---ccCCC--CCEEEEEEE--------cCHHHHHHHHHc
Confidence 456666666765555554 331 5678888774 22221 246776654 678888888775
No 142
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=25.80 E-value=3.3e+02 Score=21.33 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHCCC
Q 019801 204 GFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 204 G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 278 (335)
|..+.+.+-||..+.|.+++......+..+-|.|+=.+. ..+-...-+.|.++++-+....|-++...
T Consensus 29 ~~~~~~~~~Dg~~v~v~l~~~~~~~~~~~vEViG~V~~~-------~~I~~~~~~~~g~~~D~~~yn~lv~l~~~ 96 (101)
T cd04479 29 GDSLTLISSDGVNVTVELNRPLDLPISGYVEVIGKVSPD-------LTIRVLSYIDFGDDFDMDLYNELVKLSHK 96 (101)
T ss_pred CCeEEEEcCCCCEEEEEeCCCCCcccCCEEEEEEEECCC-------CeEEEEEEEECCCccCHHHHHHHHHHHhh
Confidence 446788889997788887654334667778887764431 34666677889999998888877777643
No 143
>PRK14051 negative regulator GrlR; Provisional
Probab=25.79 E-value=2.4e+02 Score=22.83 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=37.5
Q ss_pred ccEEEEEEEecCCccccccccceecccCC--HHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCC
Q 019801 169 GDIVFVLQQKEHPKFKRKGEDLFYEHTLS--LTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 242 (335)
Q Consensus 169 GDL~v~i~v~~h~~f~R~g~dL~~~~~Is--l~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~ 242 (335)
-||++.++-..|+.-+--+-+--+.+.|+ +.+.=.++++.-.--++.+|.|.+-. +-=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~a----kFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYA----KFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEee----eeeeeeEEccCCCcc
Confidence 46667766555544333232222334444 33333344444334466666666543 334578899999995
No 144
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=25.69 E-value=1e+02 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=10.6
Q ss_pred ecCCCCCceeEEEc-CcCCCCCCC
Q 019801 107 HPCNECKGTGETIN-DKDRCPQCK 129 (335)
Q Consensus 107 ~~C~~C~G~G~~~~-~~~~C~~C~ 129 (335)
..|.-|.++|+..+ ....|..|.
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred EeccccCCCceEEECCEEEEecCC
Confidence 44555555555433 112355554
No 145
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.84 E-value=32 Score=20.12 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=10.9
Q ss_pred ecCCCCCceeEEEcCcCCCCCCC
Q 019801 107 HPCNECKGTGETINDKDRCPQCK 129 (335)
Q Consensus 107 ~~C~~C~G~G~~~~~~~~C~~C~ 129 (335)
..|+.|.- .+......|+.|.
T Consensus 3 ~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCCcccCC--cCCcccccChhhC
Confidence 45666653 2333445566664
No 146
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=24.53 E-value=1.8e+02 Score=19.94 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCC
Q 019801 204 GFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGM 240 (335)
Q Consensus 204 G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gm 240 (335)
+-...|-|.||..+.|+.+++ .+-|+.+.+.-.-.
T Consensus 5 ~~~aiVlT~dGeF~~ik~~~~--~~vG~eI~~~~~~~ 39 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKIKRKPG--MEVGQEIEFDEKDI 39 (56)
T ss_pred CCEEEEEcCCCcEEEEeCCCC--CcccCEEEEechhh
Confidence 446778889998888887766 56787777665443
No 147
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=24.27 E-value=1.2e+02 Score=23.68 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=17.6
Q ss_pred EEEEEEECCCCCCHHHHHHHH
Q 019801 253 YIHFTVEFPDSLTPDQVKALE 273 (335)
Q Consensus 253 ~i~~~V~~P~~l~~~~~~~l~ 273 (335)
.|++.|++|..+++++...++
T Consensus 3 lV~m~V~~P~~~~~~~~~~i~ 23 (90)
T TIGR03221 3 HVRMDVNLPVDMPAEKAAAIK 23 (90)
T ss_pred EEEEEeeCCCCCCHHHHHHHH
Confidence 589999999999988766664
No 148
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=24.13 E-value=1.8e+02 Score=24.05 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCC---CCCcEEEEEE
Q 019801 204 GFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF---MKGKLYIHFT 257 (335)
Q Consensus 204 G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~---~~GdL~i~~~ 257 (335)
+-.+.|.+.+|-.+.|.+ | + +...+.|+|+-..-+.+ .+|+++++|.
T Consensus 53 ~HA~~i~~~~G~eiLiHi--G--i---dTv~l~g~gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 53 KHAIGIESDSGVEILIHI--G--I---DTVKLNGEGFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred CCEEEEEeCCCcEEEEEe--e--e---eeeecCCCceEEEecCCCEEcCCCEEEEEc
Confidence 445667788887777665 4 2 45667888876542222 4799999986
No 149
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=23.78 E-value=39 Score=30.59 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=23.1
Q ss_pred EEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCC
Q 019801 206 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLY 243 (335)
Q Consensus 206 ~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~ 243 (335)
++.|+-+|||.+.+....|. +.-=+.+.-.+.|||+.
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~-lnrldrltaanygmpin 198 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGM-LNRLDRLTAANYGMPIN 198 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TT-T--GGGTGGGGTT--SS
T ss_pred ceeeeCCCCcEEEEEeccch-hhHHHHHhhhhcCCccc
Confidence 68899999998888766663 34345666679999985
No 150
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.65 E-value=54 Score=34.95 Aligned_cols=60 Identities=23% Similarity=0.576 Sum_probs=37.6
Q ss_pred eceeeEeecce-----eeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCC
Q 019801 52 LGTSKKLSLSR-----NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126 (335)
Q Consensus 52 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~ 126 (335)
.| ..=+-++| ...|..|.- ...|+.|.+.=... + ......|..|+-.- . -..|+
T Consensus 368 ~g-qvll~lnRrGyap~l~C~~Cg~-------~~~C~~C~~~L~~h---~------~~~~l~Ch~CG~~~--~--p~~Cp 426 (665)
T PRK14873 368 HG-PVLVQVPRRGYVPSLACARCRT-------PARCRHCTGPLGLP---S------AGGTPRCRWCGRAA--P--DWRCP 426 (665)
T ss_pred cC-cEEEEecCCCCCCeeEhhhCcC-------eeECCCCCCceeEe---c------CCCeeECCCCcCCC--c--CccCC
Confidence 35 55555554 478998863 46899998862211 1 01245699997542 2 37899
Q ss_pred CCCCCe
Q 019801 127 QCKGDK 132 (335)
Q Consensus 127 ~C~G~g 132 (335)
.|.+..
T Consensus 427 ~Cgs~~ 432 (665)
T PRK14873 427 RCGSDR 432 (665)
T ss_pred CCcCCc
Confidence 998764
No 151
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=23.04 E-value=47 Score=29.12 Aligned_cols=25 Identities=28% Similarity=0.778 Sum_probs=15.3
Q ss_pred eeEcCCCCCCCCCCCCcccCCCCCcccE
Q 019801 63 NVICSKCSGKGSKSGASMKCSGCQGTGM 90 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 90 (335)
-++|..|.+.--+. .+||.|.+.|.
T Consensus 162 cilCtvCe~r~w~g---~~CPKCGr~G~ 186 (200)
T PF12387_consen 162 CILCTVCEGREWKG---GNCPKCGRHGK 186 (200)
T ss_pred eEEEeeeecCccCC---CCCCcccCCCC
Confidence 36777777654432 34777766665
No 152
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=22.72 E-value=3.5e+02 Score=27.64 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=48.9
Q ss_pred EEEEEec---CCcCCcEEEe-cCCCCCCCCCCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecC-CC
Q 019801 140 LEVIVEK---GMQNGQKITF-PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHL-DG 214 (335)
Q Consensus 140 l~V~Ip~---G~~~G~~i~~-~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tl-dG 214 (335)
.+|.+|. ++.+|..+.. ..+||. ...||.+++|+..+ .+++|+.. +|
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~---V~~Gq~L~~VEtdK-------------------------~~~eI~Ap~~G 143 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFLKKPGER---VQADEAIAQIETDK-------------------------VTIDIASPASG 143 (463)
T ss_pred eEEecCCCCCCcceEEEEEEEeCCCCE---ecCCCEEEEEEecc-------------------------eeeEEecCCCe
Confidence 4677776 6888888764 456654 46799999997543 13455554 77
Q ss_pred CEEEEEeCCCccccCCcEEEEc
Q 019801 215 RQLLIKSNPGEVVKPDSYKAIN 236 (335)
Q Consensus 215 ~~l~i~ip~g~v~~~g~~~~i~ 236 (335)
....|.+..|+.+..|+.+.+-
T Consensus 144 ~v~~ilv~eGd~V~vG~~L~~I 165 (463)
T PLN02226 144 VIQEFLVKEGDTVEPGTKVAII 165 (463)
T ss_pred EEEEEEeCCCCEecCCCEEEEe
Confidence 7668888899988999988553
No 153
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=22.47 E-value=61 Score=26.50 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCEEEEecCCCCEEEEEeCCCc--cccCCcEEEEccCCCCCCCCCC--CCCcEEEEEEEECCC
Q 019801 204 GFQFALTHLDGRQLLIKSNPGE--VVKPDSYKAINEEGMPLYQRPF--MKGKLYIHFTVEFPD 262 (335)
Q Consensus 204 G~~~~i~tldG~~l~i~ip~g~--v~~~g~~~~i~g~Gmp~~~~~~--~~GdL~i~~~V~~P~ 262 (335)
|..+.|.+-||+.+.-+||+|= +++.|+.+. .|-|...+|+ .+|-.=.++-..=|.
T Consensus 23 g~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~---~dqpLT~nPNVGGFGQ~e~EIVLQ~p~ 82 (118)
T PF01333_consen 23 GYEVTIETSDGETVVETIPAGPELIVSEGQSVK---ADQPLTNNPNVGGFGQGETEIVLQNPN 82 (118)
T ss_dssp EEEEEEETTTSEEEEEEEESSS-BS--TT-EET---TT-BSB------EEEEEEEEEEE--SH
T ss_pred CEEEEEECCCCCEEEEecCCCCeEEEcCCCEEe---cCCcccCCCCcCccCcCceEEEeeccc
Confidence 4579999999998888899873 345565442 3556665553 456655665555553
No 154
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.42 E-value=54 Score=26.45 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=10.0
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCC
Q 019801 107 HPCNECKGTGETINDKDRCPQCKGD 131 (335)
Q Consensus 107 ~~C~~C~G~G~~~~~~~~C~~C~G~ 131 (335)
..|..|+-..........|+.|.+.
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEFDFSCPRCGSP 95 (113)
T ss_dssp EEETTTS-EEECHHCCHH-SSSSSS
T ss_pred EECCCCCCEEecCCCCCCCcCCcCC
Confidence 3444444443333333345555544
No 155
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=22.36 E-value=1.1e+02 Score=24.78 Aligned_cols=28 Identities=29% Similarity=0.769 Sum_probs=19.3
Q ss_pred eecCCCCCceeEEEcCcCCCCCCCCCeE
Q 019801 106 QHPCNECKGTGETINDKDRCPQCKGDKV 133 (335)
Q Consensus 106 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~ 133 (335)
+..|..|+-.-.+......|+.|.+...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCCc
Confidence 5678888865555444456999997643
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.12 E-value=65 Score=34.39 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=25.7
Q ss_pred eeEcCCCCCCCCC--CCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCcee
Q 019801 63 NVICSKCSGKGSK--SGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 63 ~~~C~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
...|++|++.=.- ......|..|+-+- .....|+.|++.-
T Consensus 390 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 390 VAECPHCDASLTLHRFQRRLRCHHCGYQE--------------PIPKACPECGSTD 431 (679)
T ss_pred ccCCCCCCCceeEECCCCeEECCCCcCCC--------------CCCCCCCCCcCCe
Confidence 4569999985432 22335799886542 2356799998764
No 157
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=21.96 E-value=3.4e+02 Score=25.53 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=42.5
Q ss_pred EEEEec---CCcCCcEEEecC-CCCCCCCCCcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEec-CCCC
Q 019801 141 EVIVEK---GMQNGQKITFPG-EADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTH-LDGR 215 (335)
Q Consensus 141 ~V~Ip~---G~~~G~~i~~~G-~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~t-ldG~ 215 (335)
+|.+|. +|.+|..+.+.- .|+. ...||.+++|+..+- +..|+- -+|.
T Consensus 4 ~~~~p~~~~~~~~g~~~~~~~~~g~~---v~~~~~~~~~e~~k~-------------------------~~~~~a~~~g~ 55 (371)
T PRK14875 4 PITMPKWGLSMTEGKVAGWLVQEGDE---VEKGDELLDVETDKI-------------------------TNEVEAPAAGT 55 (371)
T ss_pred EEeCCCCCCCCceEEEEEEEcCCCCE---eCCCCEEEEEEecce-------------------------eEEEecCCCeE
Confidence 455554 677777776643 3553 457888888864321 233432 3776
Q ss_pred EEEEEeCCCccccCCcEEEEc
Q 019801 216 QLLIKSNPGEVVKPDSYKAIN 236 (335)
Q Consensus 216 ~l~i~ip~g~v~~~g~~~~i~ 236 (335)
...|.++.|+.+..|+.+..-
T Consensus 56 ~~~~~~~~g~~v~~g~~l~~i 76 (371)
T PRK14875 56 LRRQVAQEGETLPVGALLAVV 76 (371)
T ss_pred EEEEEcCCCCEeCCCCEEEEE
Confidence 666777888888888876443
No 158
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.85 E-value=67 Score=32.98 Aligned_cols=43 Identities=14% Similarity=0.440 Sum_probs=27.9
Q ss_pred eeeEcCCCCCCCCC--CCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEE
Q 019801 62 RNVICSKCSGKGSK--SGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 62 r~~~C~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
....|+.|++.=.- ......|..|+-+ ......|+.|.+.-..
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~--------------~~~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQ--------------EPIPKTCPQCGSEDLV 265 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCc--------------CCCCCCCCCCCCCeeE
Confidence 45679999876542 2234679999643 2235689999876433
No 159
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=21.75 E-value=1.5e+02 Score=25.84 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=32.0
Q ss_pred CEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCC---CCCcEEEEEEE
Q 019801 205 FQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF---MKGKLYIHFTV 258 (335)
Q Consensus 205 ~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~---~~GdL~i~~~V 258 (335)
--+-|.|-+|-.+.|.+ | + +...+.|+|+-..-..+ ..||++++|..
T Consensus 76 HAigi~t~~G~eiLIHi--G--i---DTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 76 HAFSIESDSGVELFVHF--G--I---DTVELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred CEEEEEeCCCcEEEEEE--e--e---cccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 34667888887777766 4 3 45678888886542222 47999999863
No 160
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.59 E-value=1.3e+02 Score=24.38 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=4.6
Q ss_pred eeEcCCCC
Q 019801 63 NVICSKCS 70 (335)
Q Consensus 63 ~~~C~~C~ 70 (335)
...|..|+
T Consensus 71 ~~~C~~Cg 78 (117)
T PRK00564 71 ELECKDCS 78 (117)
T ss_pred EEEhhhCC
Confidence 34566665
No 161
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=21.14 E-value=1e+02 Score=31.62 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=20.2
Q ss_pred EEecCCccceeceecCCCCCceeEEEc
Q 019801 94 IRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 94 ~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
.++.++.+......+|+.|.|+|.+..
T Consensus 383 R~R~~~sl~~~~~~~cp~c~G~g~v~~ 409 (487)
T COG1530 383 RKRTRESLLEVLSERCPGCKGTGHVRS 409 (487)
T ss_pred EEecCCCCceeeeeECCCceeeEEEec
Confidence 334466677777888999999998775
No 162
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.13 E-value=57 Score=20.75 Aligned_cols=7 Identities=43% Similarity=1.289 Sum_probs=3.0
Q ss_pred cCCCCCc
Q 019801 81 KCSGCQG 87 (335)
Q Consensus 81 ~C~~C~G 87 (335)
+|+.|+-
T Consensus 4 ~Cp~C~~ 10 (36)
T PF13717_consen 4 TCPNCQA 10 (36)
T ss_pred ECCCCCC
Confidence 3444443
No 163
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.05 E-value=1e+02 Score=21.47 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=7.8
Q ss_pred ccCCCCCcccEEEEEE
Q 019801 80 MKCSGCQGTGMKVSIR 95 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~ 95 (335)
.+|+-| |.-.+....
T Consensus 4 kPCPFC-G~~~~~~~~ 18 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQ 18 (61)
T ss_pred cCCCCC-CCcceEeec
Confidence 356666 555444333
No 164
>PRK02935 hypothetical protein; Provisional
Probab=21.05 E-value=47 Score=26.72 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=18.1
Q ss_pred ceecCCCCCceeEEEcCcCCCCCCC
Q 019801 105 MQHPCNECKGTGETINDKDRCPQCK 129 (335)
Q Consensus 105 ~~~~C~~C~G~G~~~~~~~~C~~C~ 129 (335)
.+..||.|+=.-+...+.|.|-.|+
T Consensus 69 vqV~CP~C~K~TKmLGrvD~CM~C~ 93 (110)
T PRK02935 69 VQVICPSCEKPTKMLGRVDACMHCN 93 (110)
T ss_pred eeeECCCCCchhhhccceeecCcCC
Confidence 3567888876666666678888886
No 165
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=2.6e+02 Score=23.79 Aligned_cols=70 Identities=19% Similarity=0.077 Sum_probs=55.8
Q ss_pred cceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCC
Q 019801 189 DLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS 263 (335)
Q Consensus 189 dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~ 263 (335)
++.....++..+++.+....+.-.......+.++.+ ...+..+++.+.+.... ...++++..+.+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 219 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLLGKALKSTIKAG--ALEGKALRLKGLLKSAR---GALGKARLKELSKRHPP 219 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccccccccccCCcc--cccCceeeecccCCcCC---CCcccceeeeeccCCCC
Confidence 677788899999999998888887776555677877 67899999999998754 45789998888776543
No 166
>COG2371 UreE Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=1.8e+02 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=27.2
Q ss_pred EEEEecCCCCEEEEEeCCCccccCCcEEEEcc
Q 019801 206 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 237 (335)
Q Consensus 206 ~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g 237 (335)
...+.|-+|+.+-|.+|.+.+..+|+++..++
T Consensus 35 r~R~~t~~G~ev~l~L~~~~~L~~GD~L~~~d 66 (155)
T COG2371 35 RLRKTTDDGREVGLRLPRGVLLRDGDVLLAED 66 (155)
T ss_pred EEEEeCCCCcEEEEEcCCCccccCCCEEEeCC
Confidence 45678889999999999998899999987665
No 167
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.01 E-value=47 Score=24.71 Aligned_cols=39 Identities=26% Similarity=0.590 Sum_probs=17.7
Q ss_pred EcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeE
Q 019801 65 ICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 117 (335)
Q Consensus 65 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~ 117 (335)
.||.|+-.=...+....|..|... ......||.|+-.=.
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~--------------~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKD--------------YKKEAFCPDCGQPLE 41 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--E--------------EEEEEE-TTT-SB-E
T ss_pred cCCCCCCccEEeCCEEECcccccc--------------ceecccCCCcccHHH
Confidence 577777653333334567777663 123566888875433
No 168
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.01 E-value=25 Score=34.31 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=25.0
Q ss_pred cEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q 019801 251 KLYIHFTVEFPDSLTPDQVKALEAILPSRP 280 (335)
Q Consensus 251 dL~i~~~V~~P~~l~~~~~~~l~~~l~~~~ 280 (335)
.||..=.|.||.+||++.+.+|.-||...+
T Consensus 378 eLIl~ed~kFPr~ls~eAktLLsGLL~kdP 407 (516)
T KOG0690|consen 378 ELILMEDLKFPRTLSPEAKTLLSGLLKKDP 407 (516)
T ss_pred HHHHhhhccCCccCCHHHHHHHHHHhhcCh
Confidence 356666899999999999999999997544
No 169
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=20.83 E-value=2.1e+02 Score=25.86 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=30.8
Q ss_pred ccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEcc
Q 019801 194 HTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 237 (335)
Q Consensus 194 ~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g 237 (335)
+.|++.++ .=..+.+.|-+|+.+-|.+|.+++++.|+++....
T Consensus 25 V~L~~ddr-~KrR~R~~td~G~evgl~LpRg~~L~dGDvL~~dd 67 (206)
T PRK13263 25 LTLAFDAR-CKSRLAATLDTGREVAVVLPRGTVLRDGDVLVAED 67 (206)
T ss_pred EEECHHHh-hcceEEEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 44444333 33456778889999999999888888888887654
No 170
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=20.38 E-value=1.3e+02 Score=24.27 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=17.8
Q ss_pred eecCCCCCceeEEEcCcCCCCCCCCCe
Q 019801 106 QHPCNECKGTGETINDKDRCPQCKGDK 132 (335)
Q Consensus 106 ~~~C~~C~G~G~~~~~~~~C~~C~G~g 132 (335)
...|+.|+-.-.+......|+.|.+..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCC
Confidence 567888874444433346699999865
No 171
>PRK14113 urease accessory protein UreE; Provisional
Probab=20.24 E-value=2.1e+02 Score=24.52 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=33.0
Q ss_pred ccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEcc
Q 019801 194 HTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 237 (335)
Q Consensus 194 ~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g 237 (335)
+.+++ +...=....+.|-.|+.+-|.+|.++.+.+|+++....
T Consensus 19 v~L~~-~~r~r~R~R~~t~~G~e~~l~L~r~~~L~dGD~L~~dd 61 (152)
T PRK14113 19 ITLDH-DTRKKGRIKSVTDNGEEIGVFLERGHPLLVGEILKTEC 61 (152)
T ss_pred EEECH-HHhhhceEEEEcCCCcEEEEECCCCcccCCCCEEEcCC
Confidence 44444 45555677889999999999999998899999885543
No 172
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.16 E-value=56 Score=35.17 Aligned_cols=38 Identities=18% Similarity=0.537 Sum_probs=26.5
Q ss_pred eEcCCCCCCCCCCC--CcccCCCCCcccEEEEEEecCCccceeceecCCCCCce
Q 019801 64 VICSKCSGKGSKSG--ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGT 115 (335)
Q Consensus 64 ~~C~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~ 115 (335)
..|++|...=.--. ....|..|+=+.. ....|+.|.+.
T Consensus 445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~--------------~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLTLHKATGQLRCHYCGYQEP--------------IPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceEEecCCCeeEeCCCCCCCC--------------CCCCCCCCCCC
Confidence 56999997754322 2367999976632 25679999988
Done!