Query 019801
Match_columns 335
No_of_seqs 355 out of 1843
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlt_A Protein YDJ1, mitochond 100.0 1.3E-67 4.4E-72 486.5 23.5 241 31-273 6-248 (248)
2 3agx_A DNAJ homolog subfamily 100.0 1.3E-49 4.4E-54 350.2 19.6 180 36-278 2-181 (181)
3 2q2g_A HSP40 protein, heat sho 100.0 6.3E-48 2.2E-52 339.2 21.4 178 35-277 2-180 (180)
4 3lz8_A Putative chaperone DNAJ 100.0 2.1E-46 7.1E-51 357.6 19.4 200 8-277 115-315 (329)
5 1c3g_A Heat shock protein 40; 100.0 2.2E-44 7.5E-49 313.9 16.1 169 37-273 1-170 (170)
6 1xao_A YDJ1, mitochondrial pro 100.0 1.6E-30 5.6E-35 214.0 12.6 118 182-302 1-120 (121)
7 3i38_A Putative chaperone DNAJ 99.9 1.5E-27 5E-32 192.7 9.6 95 178-278 2-96 (109)
8 2ctt_A DNAJ homolog subfamily 99.8 9.9E-23 3.4E-27 163.1 1.7 102 36-144 1-103 (104)
9 1exk_A DNAJ protein; extended 99.5 1.4E-14 4.7E-19 109.7 5.5 77 53-136 1-78 (79)
10 1nlt_A Protein YDJ1, mitochond 99.2 7.6E-12 2.6E-16 114.6 6.0 131 47-190 40-246 (248)
11 3i38_A Putative chaperone DNAJ 99.0 4.7E-10 1.6E-14 90.0 5.1 52 140-192 40-91 (109)
12 1xao_A YDJ1, mitochondrial pro 98.8 2.7E-09 9.1E-14 87.1 5.1 54 139-192 35-93 (121)
13 1c3g_A Heat shock protein 40; 98.6 6.1E-08 2.1E-12 83.6 6.1 72 189-263 2-81 (170)
14 2q2g_A HSP40 protein, heat sho 98.5 9E-08 3.1E-12 83.3 6.3 74 187-263 3-87 (180)
15 3lz8_A Putative chaperone DNAJ 98.5 9.4E-08 3.2E-12 90.8 5.5 76 184-262 137-225 (329)
16 3agx_A DNAJ homolog subfamily 98.5 3E-07 1E-11 80.0 7.8 74 187-264 2-88 (181)
17 3lcz_A YCZA, inhibitor of trap 97.8 5.1E-06 1.8E-10 57.5 1.4 34 102-137 5-38 (53)
18 2ctt_A DNAJ homolog subfamily 97.8 1.3E-05 4.4E-10 63.3 3.2 60 49-122 32-97 (104)
19 1exk_A DNAJ protein; extended 97.7 7.5E-06 2.6E-10 61.2 1.4 57 49-119 15-77 (79)
20 3pmq_A Decaheme cytochrome C M 97.7 3.7E-07 1.3E-11 93.6 -8.8 78 40-117 168-257 (669)
21 2bx9_A Anti-trap, AT, tryptoph 97.1 4.4E-05 1.5E-09 52.8 -1.0 29 63-93 9-37 (53)
22 2bx9_A Anti-trap, AT, tryptoph 96.9 0.00034 1.2E-08 48.3 1.9 27 80-119 10-36 (53)
23 3lcz_A YCZA, inhibitor of trap 96.9 0.00035 1.2E-08 48.2 2.0 27 63-91 9-35 (53)
24 2lll_A Lamin-B2; immunoglobuli 49.8 49 0.0017 26.8 7.0 40 201-241 47-87 (139)
25 3jt0_A Lamin-B1; structural ge 49.6 36 0.0012 27.7 6.2 52 201-255 51-102 (144)
26 1ifr_A Lamin A/C; immunoglobul 39.6 94 0.0032 24.4 7.0 51 201-254 32-83 (121)
27 2bx2_L Ribonuclease E, RNAse E 37.5 8.6 0.00029 38.2 0.7 32 89-120 390-422 (517)
28 3hn9_A Lamin-B1; structural ge 36.9 80 0.0027 24.8 6.2 40 201-241 38-77 (123)
29 1ufg_A Lamin A, nuclear lamin; 36.0 1.2E+02 0.0041 24.8 7.3 51 201-254 63-114 (151)
30 3pmq_A Decaheme cytochrome C M 35.6 4.8 0.00016 41.3 -1.6 29 80-115 192-220 (669)
31 1ltl_A DNA replication initiat 35.5 45 0.0015 29.9 5.2 84 81-177 136-223 (279)
32 1ltl_A DNA replication initiat 35.4 1.5E+02 0.0053 26.3 8.8 81 89-176 118-205 (279)
33 3vdz_A Ubiquitin-40S ribosomal 34.1 41 0.0014 25.6 4.0 41 185-225 13-56 (111)
34 1sif_A Ubiquitin; hydrophobic 27.5 50 0.0017 23.8 3.3 25 201-225 6-30 (88)
35 1mli_A Muconolactone isomerase 26.4 69 0.0024 24.2 3.9 21 253-273 4-24 (96)
36 2ftc_B Mitochondrial ribosomal 26.2 1.9E+02 0.0066 23.1 6.9 69 141-225 25-107 (136)
37 2vl6_A SSO MCM N-TER, minichro 25.3 2.2E+02 0.0075 25.0 7.9 62 106-175 168-234 (268)
38 2jne_A Hypothetical protein YF 24.8 29 0.00099 26.4 1.5 40 64-117 33-72 (101)
39 2vf7_A UVRA2, excinuclease ABC 24.3 28 0.00095 36.6 1.8 33 81-117 640-672 (842)
40 1gmu_A UREE; metallochaperone; 23.7 1.2E+02 0.0043 24.3 5.3 44 193-237 17-60 (143)
41 2dgy_A MGC11102 protein; EIF-1 23.2 2.6E+02 0.0088 21.5 7.4 62 201-275 24-90 (111)
42 2jrp_A Putative cytoplasmic pr 22.3 52 0.0018 24.1 2.4 25 64-88 3-27 (81)
43 2kdx_A HYPA, hydrogenase/ureas 22.0 71 0.0024 24.7 3.4 27 63-89 73-100 (119)
44 1msz_A DNA-binding protein smu 21.3 48 0.0017 24.6 2.1 21 257-277 35-55 (86)
45 2r6f_A Excinuclease ABC subuni 21.2 43 0.0015 35.8 2.5 32 81-116 755-786 (972)
46 3nyb_B Protein AIR2; polya RNA 20.5 53 0.0018 24.0 2.2 52 63-119 5-59 (83)
No 1
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=1.3e-67 Score=486.46 Aligned_cols=241 Identities=45% Similarity=0.884 Sum_probs=220.4
Q ss_pred CCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCC
Q 019801 31 RRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCN 110 (335)
Q Consensus 31 ~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~ 110 (335)
+++++++|+.+.|.|||||+|+|++++|.+.+.+.|++|+|+|+++++..+|+.|+|+|.++..+++|| |+++++.+|+
T Consensus 6 ~~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~ 84 (248)
T 1nlt_A 6 RGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECD 84 (248)
T ss_dssp --CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCT
T ss_pred CCCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCC
Confidence 445789999999999999999999999999999999999999999887789999999999999999999 9999999999
Q ss_pred CCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccccc
Q 019801 111 ECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDL 190 (335)
Q Consensus 111 ~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL 190 (335)
.|+|+|+++..+++|+.|+|.+++.+.++|+|+|||||++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||
T Consensus 85 ~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 85 VCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp TCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999987899999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred eecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCC--CCHHH
Q 019801 191 FYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQ 268 (335)
Q Consensus 191 ~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~--l~~~~ 268 (335)
|++++|||+|||+|++++|+||||+.+.|+||||++++||++++|+|+|||..+++ .+|||||+|+|+||++ ||++|
T Consensus 165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q 243 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN 243 (248)
T ss_dssp EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence 99999999999999999999999998999999999999999999999999987554 6899999999999999 99999
Q ss_pred HHHHH
Q 019801 269 VKALE 273 (335)
Q Consensus 269 ~~~l~ 273 (335)
+++|+
T Consensus 244 ~~~l~ 248 (248)
T 1nlt_A 244 LKKLE 248 (248)
T ss_dssp -----
T ss_pred HHhhC
Confidence 98875
No 2
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=1.3e-49 Score=350.19 Aligned_cols=180 Identities=38% Similarity=0.688 Sum_probs=160.7
Q ss_pred CCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCce
Q 019801 36 GEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGT 115 (335)
Q Consensus 36 g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~ 115 (335)
++|+.+.|.|||||+|+|+++++.+.+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~----------------------------------------------------- 28 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH----------------------------------------------------- 28 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence 468999999999999999999987643
Q ss_pred eEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccccceeccc
Q 019801 116 GETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHT 195 (335)
Q Consensus 116 G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~ 195 (335)
+|..|+|.+++.+.++++|+|||||++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+|||++++
T Consensus 29 --------~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~ 100 (181)
T 3agx_A 29 --------KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPAR 100 (181)
T ss_dssp --------EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred --------ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEE
Confidence 123334444556789999999999999999999999999888899999999999999999999999999999
Q ss_pred CCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 019801 196 LSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI 275 (335)
Q Consensus 196 Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 275 (335)
|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|+++
T Consensus 101 Isl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~ 178 (181)
T 3agx_A 101 ISLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178 (181)
T ss_dssp EEHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHH
T ss_pred cCHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHh
Confidence 99999999999999999999899999987 8999999999999998755567899999999999999999999999999
Q ss_pred CCC
Q 019801 276 LPS 278 (335)
Q Consensus 276 l~~ 278 (335)
||.
T Consensus 179 ~~~ 181 (181)
T 3agx_A 179 LPI 181 (181)
T ss_dssp SCC
T ss_pred ccC
Confidence 963
No 3
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=6.3e-48 Score=339.16 Aligned_cols=178 Identities=39% Similarity=0.670 Sum_probs=164.5
Q ss_pred CCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCc
Q 019801 35 RGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKG 114 (335)
Q Consensus 35 ~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G 114 (335)
+++|+.+.|.|||||+|+|+++++.+.+.+.|+.
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 4789999999999999999999999999888741
Q ss_pred eeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCC-CCCCCcccEEEEEEEecCCccccccccceec
Q 019801 115 TGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADE-APDTVTGDIVFVLQQKEHPKFKRKGEDLFYE 193 (335)
Q Consensus 115 ~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~-~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~ 193 (335)
+++.+.++++|+|||||++|++|+|+|+|++ .+++.+|||||+|++++|+.|+|+|+|||++
T Consensus 36 -----------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~ 98 (180)
T 2q2g_A 36 -----------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMK 98 (180)
T ss_dssp -----------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEE
T ss_pred -----------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEE
Confidence 2345678999999999999999999999999 7889999999999999999999999999999
Q ss_pred ccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Q 019801 194 HTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALE 273 (335)
Q Consensus 194 ~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~ 273 (335)
++|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|+
T Consensus 99 ~~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 176 (180)
T 2q2g_A 99 VTIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIK 176 (180)
T ss_dssp EEEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHH
T ss_pred EEcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999999899999988 89999999999999987655678999999999999999999999999
Q ss_pred HHCC
Q 019801 274 AILP 277 (335)
Q Consensus 274 ~~l~ 277 (335)
++||
T Consensus 177 ~~~p 180 (180)
T 2q2g_A 177 EALD 180 (180)
T ss_dssp HHC-
T ss_pred HhcC
Confidence 9985
No 4
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2.1e-46 Score=357.62 Aligned_cols=200 Identities=24% Similarity=0.353 Sum_probs=158.9
Q ss_pred CChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCc
Q 019801 8 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQG 87 (335)
Q Consensus 8 ~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 87 (335)
.+|+|||++|||++++ +++.++++++.|+.+.|.|||+|+|+|++++|.+++.+.| +.
T Consensus 115 ~~f~diF~~~Fg~~g~---~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g~--------------- 172 (329)
T 3lz8_A 115 QDFDDIFSSMFGQQAH---QRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----VF--------------- 172 (329)
T ss_dssp -------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----SC---------------
T ss_pred CchhhhhHhhhcCcCC---CCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----CC---------------
Confidence 3678999999985321 1112346789999999999999999999999999876532 11
Q ss_pred ccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCC-CC
Q 019801 88 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~~ 166 (335)
|.+ .+...++++|+||||+++|++|+|+|+|++.+ ++
T Consensus 173 -G~v-----------------------------------------~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg 210 (329)
T 3lz8_A 173 -GMI-----------------------------------------ESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGG 210 (329)
T ss_dssp -C-C-----------------------------------------CEEEEEEEEEEECTTCCTTCEEEESSCSCCC---C
T ss_pred -eEE-----------------------------------------EEecceEEEEeCCCCCCCCCEEEEcccccCCCCCC
Confidence 110 12335689999999999999999999999875 67
Q ss_pred CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801 167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246 (335)
Q Consensus 167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||+++++|+|+|||||++++|+||||+ +.|+||+| ++||++++|+|+|||..
T Consensus 211 ~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~~rl~G~GmP~~--- 284 (329)
T 3lz8_A 211 PNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVSK--- 284 (329)
T ss_dssp CCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBCS---
T ss_pred CCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCEEEEcCCCCCCC---
Confidence 8999999999999999999999999999999999999999999999998 69999999 79999999999999975
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHCC
Q 019801 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILP 277 (335)
Q Consensus 247 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~ 277 (335)
..+|||||+|+|+||++||++|+++|+++..
T Consensus 285 ~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~ 315 (329)
T 3lz8_A 285 THTGDLFAVIKIVMPTKPDEKARELWQQLAA 315 (329)
T ss_dssp SCBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999999999875
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=2.2e-44 Score=313.86 Aligned_cols=169 Identities=34% Similarity=0.593 Sum_probs=153.6
Q ss_pred CceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCcee
Q 019801 37 EDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 37 ~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
+|+.+.|.|||||+|+|+++++++.+.. + .
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~------------------~---------------------------- 30 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P------------------H---------------------------- 30 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T------------------T----------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C------------------C----------------------------
Confidence 4899999999999999999999987641 0 0
Q ss_pred EEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCC-CCCCCcccEEEEEEEecCCccccccccceeccc
Q 019801 117 ETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADE-APDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHT 195 (335)
Q Consensus 117 ~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~-~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~ 195 (335)
+.+ +.++++|+|||||++|++|+|+|+|++ .+++.+|||||+|++++|+.|+|+|+|||++++
T Consensus 31 ---------------G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~ 94 (170)
T 1c3g_A 31 ---------------GAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94 (170)
T ss_dssp ---------------TEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEEC
T ss_pred ---------------CcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEE
Confidence 112 568899999999999999999999994 678899999999999999999999999999999
Q ss_pred CCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Q 019801 196 LSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALE 273 (335)
Q Consensus 196 Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~ 273 (335)
|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|+
T Consensus 95 Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 95 LSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp CBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred cCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 99999999999999999998889999988 89999999999999987655678999999999999999999998863
No 6
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=213.97 Aligned_cols=118 Identities=37% Similarity=0.615 Sum_probs=101.7
Q ss_pred ccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECC
Q 019801 182 KFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFP 261 (335)
Q Consensus 182 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P 261 (335)
.|+|+|+||+++++|||++||+|+++.|+||||+.+.|+||+|++++||++++|+|+|||..+++ .+|||||+|+|+||
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 49999999999999999999999999999999998999999999999999999999999987554 68999999999999
Q ss_pred CC--CCHHHHHHHHHHCCCCCCCCCCCCCcccceeeeeecCCh
Q 019801 262 DS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNI 302 (335)
Q Consensus 262 ~~--l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (335)
++ |+++|+++|+++++.++. .. ....+++|++.|.++|+
T Consensus 80 ~~~~ls~~q~~~l~~l~~~~~~-~~-~~~~~~~ee~~~~~~~~ 120 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPPRIV-PA-IPKKATVDECVLADFDP 120 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCCCCC-CC-CCTTSCEEEEECEECCC
T ss_pred CCCCCCHHHHHHHHHHcccccc-cC-CCCCCCceEEEeeccCC
Confidence 99 999999999999987653 11 23447788888988876
No 7
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.94 E-value=1.5e-27 Score=192.74 Aligned_cols=95 Identities=19% Similarity=0.300 Sum_probs=88.3
Q ss_pred ecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEE
Q 019801 178 KEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFT 257 (335)
Q Consensus 178 ~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~ 257 (335)
++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||+| ++||++++|+|+|||.. . .+|||||+|+
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g--~~~G~~~rl~G~G~p~~--~-~~GDL~v~~~ 75 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVSK--T-HTGDLFAVIK 75 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBCS--S-CBCCEEEEEE
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCC--cCcCeEEEECCccCCCC--C-CCcCEEEEEE
Confidence 68999999999999999999999999999999999995 89999999 89999999999999973 2 6999999999
Q ss_pred EECCCCCCHHHHHHHHHHCCC
Q 019801 258 VEFPDSLTPDQVKALEAILPS 278 (335)
Q Consensus 258 V~~P~~l~~~~~~~l~~~l~~ 278 (335)
|+||++||++|+++|++++..
T Consensus 76 V~~P~~Ls~~q~~~l~~l~~~ 96 (109)
T 3i38_A 76 IVMPTKPDEKARELWQQLAAA 96 (109)
T ss_dssp ECCCSSCCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999853
No 8
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.9e-23 Score=163.11 Aligned_cols=102 Identities=26% Similarity=0.603 Sum_probs=90.5
Q ss_pred CCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcccEEEEEEecCCccceeceecCCCCCc
Q 019801 36 GEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKG 114 (335)
Q Consensus 36 g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G 114 (335)
|.|+.+.|.|||||||+|++++|.+.+.+.|+.|+|+|+++++. .+|+.|+|+|.+...+ |+ + +++.+|+.|+|
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~--~-~~~~~C~~C~G 75 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GP--F-VMRSTCRRCGG 75 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TT--E-EEEEECSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CC--E-EEEEECCcCCC
Confidence 46788999999999999999999999999999999999998864 8999999999876543 54 3 45789999999
Q ss_pred eeEEEcCcCCCCCCCCCeEEEEeEEEEEEE
Q 019801 115 TGETINDKDRCPQCKGDKVVQEKKVLEVIV 144 (335)
Q Consensus 115 ~G~~~~~~~~C~~C~G~g~~~~~~~l~V~I 144 (335)
+|++++ ++|+.|+|.+++.+.++|+|+|
T Consensus 76 ~G~~i~--~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 76 RGSIII--SPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SSEECS--SCCSSSSSCSEECCCCSSCCSC
T ss_pred cceECC--CcCCCCCCeeEEEEEEEEEEEc
Confidence 999985 8999999999999999888765
No 9
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.50 E-value=1.4e-14 Score=109.73 Aligned_cols=77 Identities=30% Similarity=0.755 Sum_probs=65.8
Q ss_pred ceeeEeecceeeEcCCCCCCCCCCCCc-ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCC
Q 019801 53 GTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGD 131 (335)
Q Consensus 53 G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~ 131 (335)
|++++|.+.+.+.|+.|+|+|...+.. .+|+.|+|+|.++..+ |++ +++.+|+.|+|+|+++. ++|+.|+|.
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~ 73 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFF-AVQQTCPHCQGRGTLIK--DPCNKCHGH 73 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTE-EEEEECTTTTTSSEECS--SBCGGGTTS
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCC-EEeeECcCCCCccEECC--CcCCCCCCe
Confidence 567889999999999999999887654 7999999999987533 454 46789999999999985 899999999
Q ss_pred eEEEE
Q 019801 132 KVVQE 136 (335)
Q Consensus 132 g~~~~ 136 (335)
+++.+
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 98864
No 10
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.22 E-value=7.6e-12 Score=114.62 Aligned_cols=131 Identities=22% Similarity=0.368 Sum_probs=84.2
Q ss_pred eehheeceeeEeecceeeEcCCCCCCCCCC-----C-----CcccCCCCCcccEEEEEEecCCccceeceecCCCCCcee
Q 019801 47 LEDLYLGTSKKLSLSRNVICSKCSGKGSKS-----G-----ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 47 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
+-..|.|...+-. . ...|+.|+|+|... + ...+|+.|+|+|.++ ....+|+.|+|.|
T Consensus 40 ~C~~C~G~G~~~g-~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i-----------~~~~~C~~C~G~g 106 (248)
T 1nlt_A 40 LCKECEGRGGKKG-A-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII-----------DPKDRCKSCNGKK 106 (248)
T ss_dssp ECTTTTTCSBSTT-T-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC-----------CTTSBCSSSTTSC
T ss_pred eCCCCcCccCCCC-C-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe-----------ccCCCCcccCCCc
Confidence 3355677665422 2 47899999999642 1 236899999999754 2367899999999
Q ss_pred EEEcCcCC-----CCCCC------------------CCeE------------------------------------EE--
Q 019801 117 ETINDKDR-----CPQCK------------------GDKV------------------------------------VQ-- 135 (335)
Q Consensus 117 ~~~~~~~~-----C~~C~------------------G~g~------------------------------------~~-- 135 (335)
.+...+.. -..-. |.-+ +.
T Consensus 107 ~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tl 186 (248)
T 1nlt_A 107 VENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHV 186 (248)
T ss_dssp EEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECS
T ss_pred eEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCC
Confidence 86542222 11101 1111 11
Q ss_pred EeEEEEEEEecC--CcCCcEEEecCCCCCCCCC-CcccEEEEEEEecCCc--cccccccc
Q 019801 136 EKKVLEVIVEKG--MQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPK--FKRKGEDL 190 (335)
Q Consensus 136 ~~~~l~V~Ip~G--~~~G~~i~~~G~G~~~~~~-~~GDL~v~i~v~~h~~--f~R~g~dL 190 (335)
+.+.++|+||+| +++|++++|+|+|++..+. ..|||||+|+|..+.. ++.+...|
T Consensus 187 dG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~ 246 (248)
T 1nlt_A 187 SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK 246 (248)
T ss_dssp SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred CCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence 114799999999 9999999999999985432 6799999999997765 65554443
No 11
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=4.7e-10 Score=89.98 Aligned_cols=52 Identities=25% Similarity=0.357 Sum_probs=43.8
Q ss_pred EEEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCcccccccccee
Q 019801 140 LEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFY 192 (335)
Q Consensus 140 l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL~~ 192 (335)
++|+||+|+++|++++++|+|++..+ .+|||||+|+|..+..++.+...|+.
T Consensus 40 ~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~ 91 (109)
T 3i38_A 40 ILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAVIKIVMPTKPDEKARELWQ 91 (109)
T ss_dssp EEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred EEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEEEEEECCCCCCHHHHHHHH
Confidence 67999999999999999999998754 78999999999988776665554443
No 12
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.7e-09 Score=87.14 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=41.3
Q ss_pred EEEEEEecC--CcCCcEEEecCCCCCCCCC-CcccEEEEEEEecCCc--ccccccccee
Q 019801 139 VLEVIVEKG--MQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPK--FKRKGEDLFY 192 (335)
Q Consensus 139 ~l~V~Ip~G--~~~G~~i~~~G~G~~~~~~-~~GDL~v~i~v~~h~~--f~R~g~dL~~ 192 (335)
.+.|+||+| +++|++++++|+|++..+. ..|||||+|+|..+.. ++.+..+|+.
T Consensus 35 ~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l~ 93 (121)
T 1xao_A 35 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKLE 93 (121)
T ss_dssp EEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHHH
T ss_pred EEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH
Confidence 577999999 9999999999999985433 6899999999998776 6655544443
No 13
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.57 E-value=6.1e-08 Score=83.63 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=59.6
Q ss_pred cceecccCCHHHHhcCCEEEEecC----CC----CEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEEC
Q 019801 189 DLFYEHTLSLTEALCGFQFALTHL----DG----RQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEF 260 (335)
Q Consensus 189 dL~~~~~Isl~eAl~G~~~~i~tl----dG----~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~ 260 (335)
|+.+++.|||.||+.|+++.|..- +| +.+.|+||+| ++.|+.++++|+|-+.. .....|||||+++|.-
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~-~gg~~GDl~v~i~v~~ 78 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNP-QTGRRKTLQFVIQEKS 78 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCS-SSSCBCEEEEEEEECC
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCC--ccCCCEEEEeccccCCC-CCCccccEEEEEEEcc
Confidence 788999999999999998887642 23 7799999999 89999999999998643 2346799999999975
Q ss_pred CCC
Q 019801 261 PDS 263 (335)
Q Consensus 261 P~~ 263 (335)
.+.
T Consensus 79 h~~ 81 (170)
T 1c3g_A 79 HPN 81 (170)
T ss_dssp CSS
T ss_pred CCc
Confidence 443
No 14
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.54 E-value=9e-08 Score=83.30 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=60.2
Q ss_pred cccceecccCCHHHHhcCCEEEEecC-----------CCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEE
Q 019801 187 GEDLFYEHTLSLTEALCGFQFALTHL-----------DGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIH 255 (335)
Q Consensus 187 g~dL~~~~~Isl~eAl~G~~~~i~tl-----------dG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~ 255 (335)
+.|+.+++.|||.||+.|.++.|..- ..+.+.|+||+| ++.|+.++++|+|-+.. .....|||||.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~g~-~gg~~GDl~v~ 79 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPG--WKDGTKLTYSGEGDQES-PGTSPGDLVLI 79 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTT--CCTTCEEEETTCSCCSS-TTSCCCEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCC--CcCCcEEEEeeccCCCC-CCCccccEEEE
Confidence 67999999999999999998877642 246799999999 89999999999998732 23467999999
Q ss_pred EEEECCCC
Q 019801 256 FTVEFPDS 263 (335)
Q Consensus 256 ~~V~~P~~ 263 (335)
++|.-...
T Consensus 80 i~~~~h~~ 87 (180)
T 2q2g_A 80 IQTKTHPR 87 (180)
T ss_dssp EEECCCSS
T ss_pred EEEEeccc
Confidence 99874433
No 15
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.49 E-value=9.4e-08 Score=90.77 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=60.1
Q ss_pred ccccccceecccCCHHHHhcCCEEEEecC------C-------CCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCC
Q 019801 184 KRKGEDLFYEHTLSLTEALCGFQFALTHL------D-------GRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKG 250 (335)
Q Consensus 184 ~R~g~dL~~~~~Isl~eAl~G~~~~i~tl------d-------G~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~G 250 (335)
.++|.||.+++.|+|.||+.|.+..|..- . .+.+.|+|||| +++|++++++|+|.|.. +....|
T Consensus 137 ~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~G--v~~G~~Irl~G~G~~g~-~gg~~G 213 (329)
T 3lz8_A 137 AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAG--VVDGQRIRLKGQGTPGE-NGGPNG 213 (329)
T ss_dssp CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTT--CCTTCEEEESSCSCCC----CCCC
T ss_pred cCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCC--CCCCCEEEEcccccCCC-CCCCCC
Confidence 35788999999999999999987665432 2 34688999999 89999999999999864 234589
Q ss_pred cEEEEEEEECCC
Q 019801 251 KLYIHFTVEFPD 262 (335)
Q Consensus 251 dL~i~~~V~~P~ 262 (335)
||||+++|.-..
T Consensus 214 DL~v~I~v~~h~ 225 (329)
T 3lz8_A 214 DLWLVIHIAPHP 225 (329)
T ss_dssp CEEEEECCCCCS
T ss_pred cEEEEEEEecCC
Confidence 999998886443
No 16
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.47 E-value=3e-07 Score=80.03 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=58.1
Q ss_pred cccceecccCCHHHHhcCCEEEEec------CCC-------CEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEE
Q 019801 187 GEDLFYEHTLSLTEALCGFQFALTH------LDG-------RQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLY 253 (335)
Q Consensus 187 g~dL~~~~~Isl~eAl~G~~~~i~t------ldG-------~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~ 253 (335)
+.|+.+++.|||.||+.|.+++|.- -.| +.+.|+||+| ++.|+.++++|+|-+... ...||||
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~G~G~~~~~--g~~GDl~ 77 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG--WKEGTKITFPKEGDQTSN--NIPADIV 77 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCSS--SCCCCEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCC--ccCCcEEEEeeccccCCC--CCcccEE
Confidence 4689999999999999999877652 234 5689999999 899999999999987642 4689999
Q ss_pred EEEEEECCCCC
Q 019801 254 IHFTVEFPDSL 264 (335)
Q Consensus 254 i~~~V~~P~~l 264 (335)
|.++|.-.+.+
T Consensus 78 v~i~~~~h~~F 88 (181)
T 3agx_A 78 FVLKDKPHNIF 88 (181)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEeccccc
Confidence 99999754443
No 17
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.80 E-value=5.1e-06 Score=57.51 Aligned_cols=34 Identities=26% Similarity=0.813 Sum_probs=28.9
Q ss_pred ceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEe
Q 019801 102 IQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEK 137 (335)
Q Consensus 102 ~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 137 (335)
+++++.+|+.|+|+|+++. ++|+.|+|.+++.+.
T Consensus 5 ~qq~~~~C~~C~GsG~~i~--~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 5 TDDLETTCPNCNGSGREEP--EPCPKCLGKGVILTA 38 (53)
T ss_dssp HHHHEEECTTTTTSCEETT--EECTTTTTSSEEECH
T ss_pred cCceeccCcCCcccccCCC--CcCCCCCCcEEEEEE
Confidence 3567889999999999986 899999999988654
No 18
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.3e-05 Score=63.27 Aligned_cols=60 Identities=27% Similarity=0.664 Sum_probs=43.4
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCC---C---CcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCc
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKS---G---ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~ 122 (335)
+.+.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...+
T Consensus 32 ~~C~G~G~~-~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------~~~C~~C~G~G~v~~~k 97 (104)
T 2ctt_A 32 ERCNGKGNE-PGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------ISPCVVCRGAGQAKQKK 97 (104)
T ss_dssp SSSSSSSSC-TTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------SSCCSSSSSCSEECCCC
T ss_pred CCCcCCccC-CCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------CCcCCCCCCeeEEEEEE
Confidence 455665443 223457899999999642 2 136899999999864 57899999999986543
No 19
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.73 E-value=7.5e-06 Score=61.16 Aligned_cols=57 Identities=32% Similarity=0.743 Sum_probs=41.8
Q ss_pred hheeceeeEeecceeeEcCCCCCCCCCCC---C---cccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEE
Q 019801 49 DLYLGTSKKLSLSRNVICSKCSGKGSKSG---A---SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 49 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~---~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~ 119 (335)
..++|.... .......|+.|+|+|.... . ..+|+.|+|+|.++ ..+|+.|+|.|.+.
T Consensus 15 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 15 DVCHGSGAK-PGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------------KDPCNKCHGHGRVE 77 (79)
T ss_dssp GGGTTTSBC-SSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------------SSBCGGGTTSSEEE
T ss_pred CCCcccccC-CCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-------------CCcCCCCCCeEEEe
Confidence 455665543 2334578999999996531 1 25899999999864 57899999999875
No 20
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.68 E-value=3.7e-07 Score=93.63 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=58.2
Q ss_pred EEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCC----cccCCCCCcccEEEE--------EEecCCccceecee
Q 019801 40 VHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA----SMKCSGCQGTGMKVS--------IRHLGPSMIQQMQH 107 (335)
Q Consensus 40 ~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~----~~~C~~C~G~G~~~~--------~~~~gpg~~~q~~~ 107 (335)
.+.+.++|+|+..|.++++.+.+...|..|+|+|++.+. ..+|+.|+|+..... .+.+=.|.+-+...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 467889999999999999999999999999999999875 378999999941100 00000012224457
Q ss_pred cCCCCCceeE
Q 019801 108 PCNECKGTGE 117 (335)
Q Consensus 108 ~C~~C~G~G~ 117 (335)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 8999998775
No 21
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.13 E-value=4.4e-05 Score=52.79 Aligned_cols=29 Identities=34% Similarity=0.912 Sum_probs=20.2
Q ss_pred eeEcCCCCCCCCCCCCcccCCCCCcccEEEE
Q 019801 63 NVICSKCSGKGSKSGASMKCSGCQGTGMKVS 93 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 93 (335)
...|+.|+|+|.... .+|+.|+|+|.++.
T Consensus 9 ~~~C~~C~GsG~~~~--~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEG--TPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETT--EECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCC--CCCccCCCCccEEE
Confidence 357888888886642 56777777777653
No 22
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.91 E-value=0.00034 Score=48.27 Aligned_cols=27 Identities=30% Similarity=0.833 Sum_probs=15.9
Q ss_pred ccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEE
Q 019801 80 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~ 119 (335)
.+|+.|+|+|.++ ..+|+.|+|.|.++
T Consensus 10 ~~C~~C~GsG~~~-------------~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIE-------------GTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEET-------------TEECTTTTTSSEEE
T ss_pred ccCCCCcceeccC-------------CCCCccCCCCccEE
Confidence 3566666666542 34566666666654
No 23
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.90 E-value=0.00035 Score=48.22 Aligned_cols=27 Identities=30% Similarity=0.854 Sum_probs=15.0
Q ss_pred eeEcCCCCCCCCCCCCcccCCCCCcccEE
Q 019801 63 NVICSKCSGKGSKSGASMKCSGCQGTGMK 91 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 91 (335)
...|+.|+|+|.... .+|+.|+|+|.+
T Consensus 9 ~~~C~~C~GsG~~i~--~~C~~C~G~G~v 35 (53)
T 3lcz_A 9 ETTCPNCNGSGREEP--EPCPKCLGKGVI 35 (53)
T ss_dssp EEECTTTTTSCEETT--EECTTTTTSSEE
T ss_pred eccCcCCcccccCCC--CcCCCCCCcEEE
Confidence 345666666665432 456666666554
No 24
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=49.78 E-value=49 Score=26.78 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=29.4
Q ss_pred HhcCCEEEEecCCCC-EEEEEeCCCccccCCcEEEEccCCCC
Q 019801 201 ALCGFQFALTHLDGR-QLLIKSNPGEVVKPDSYKAINEEGMP 241 (335)
Q Consensus 201 Al~G~~~~i~tldG~-~l~i~ip~g~v~~~g~~~~i~g~Gmp 241 (335)
.|-|+++.= ..||+ .+..+.|++-+++||..++|-..|.-
T Consensus 47 ~L~GW~L~r-~v~g~~~~~y~Fp~~~~L~pg~~VtIws~~~g 87 (139)
T 2lll_A 47 SLGNWRIKR-QVLEGEEIAYKFTPKYILRAGQMVTVWAAGAG 87 (139)
T ss_dssp ECSSCEEEE-EETTSCEEEEECCTTCEECTTCEEEEEEGGGT
T ss_pred ccCCCEEEE-ecCCCccEEEEECCCcEECCCCEEEEEeCCCC
Confidence 455565553 34554 37789999999999999999988753
No 25
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=49.59 E-value=36 Score=27.72 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=34.8
Q ss_pred HhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEE
Q 019801 201 ALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIH 255 (335)
Q Consensus 201 Al~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~ 255 (335)
.|-|+++. ...||+.+..+.|++.+++||..+.|-.+|.-...++ -.||+-+
T Consensus 51 ~LgGW~L~-r~v~g~~~~y~FP~~~~L~pg~~VtVwa~g~g~~~~p--p~dlv~~ 102 (144)
T 3jt0_A 51 PMGGWEMI-RKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTASP--PTDLIWK 102 (144)
T ss_dssp ECTTCEEE-EEETTEEEEEECCTTCEECTTCEEEEEETTSCCCCBT--TTEEEET
T ss_pred ecCCcEEE-EEeCCCceEEEcCCCcEECCCCEEEEEECCCCCCCCC--Chhheec
Confidence 45556555 3457766678999999999999999998775322122 3566543
No 26
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=39.61 E-value=94 Score=24.35 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=34.0
Q ss_pred HhcCCEEEEecCCCC-EEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEE
Q 019801 201 ALCGFQFALTHLDGR-QLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYI 254 (335)
Q Consensus 201 Al~G~~~~i~tldG~-~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i 254 (335)
.|-|+++.=. .||+ .+..+.|++-+++||..++|-..|.-...++ -.||+-
T Consensus 32 ~L~gW~l~r~-v~~~~~~~y~Fp~~~~L~pg~~vtIws~~~g~~~~p--p~dlv~ 83 (121)
T 1ifr_A 32 SMGNWQIKRQ-NGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSP--PTDLVW 83 (121)
T ss_dssp ECTTCEEEEE-ETTSCCEEEECCSSCEECTTCEEEEEETTSSCCCBT--TTEEEE
T ss_pred ccCCCEEEEE-cCCCccEEEEeCCCcEECCCCEEEEEeCCCCCCCCC--chhEEE
Confidence 4556665533 3554 3678999999999999999998875432222 256654
No 27
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=37.53 E-value=8.6 Score=38.17 Aligned_cols=32 Identities=34% Similarity=0.664 Sum_probs=21.5
Q ss_pred cEEE-EEEecCCccceeceecCCCCCceeEEEc
Q 019801 89 GMKV-SIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 89 G~~~-~~~~~gpg~~~q~~~~C~~C~G~G~~~~ 120 (335)
|.+- ..++.++.+...+..+||.|+|+|.+..
T Consensus 390 GLvEmTRkR~r~sL~e~~~~~Cp~C~G~G~v~s 422 (517)
T 2bx2_L 390 GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 422 (517)
T ss_dssp SEEEEEECCCSCCHHHHHCCCCSSSSSSSCCCC
T ss_pred ceEEEeecCcCcChhhhhcCcCCCcCCceeECC
Confidence 4433 3335666666667778999999997654
No 28
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=36.91 E-value=80 Score=24.81 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=29.4
Q ss_pred HhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCC
Q 019801 201 ALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMP 241 (335)
Q Consensus 201 Al~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp 241 (335)
.|-|+++.- ..||.....+.|++-+++||..+.|-.+|.-
T Consensus 38 ~L~gW~l~r-~v~~~~~~y~Fp~~~~L~pg~~vtVwa~g~g 77 (123)
T 3hn9_A 38 PMGGWEMIR-KIGDTSVSYKYTSRYVLKAGQTVTIWAANAG 77 (123)
T ss_dssp ECTTCEEEE-EETTEEEEEECCTTCEECTTCEEEEEETTSS
T ss_pred ecCCcEEEE-EeCCCceEEEcCCCcEECCCCEEEEEECCCC
Confidence 455666553 3466555688999999999999999987763
No 29
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=35.98 E-value=1.2e+02 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=33.6
Q ss_pred HhcCCEEEEecCCCC-EEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEE
Q 019801 201 ALCGFQFALTHLDGR-QLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYI 254 (335)
Q Consensus 201 Al~G~~~~i~tldG~-~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i 254 (335)
.|-|+++.=. .||. .+..+.|++-+++||..++|-..+.-....+ -.||+.
T Consensus 63 ~L~GW~L~r~-vdg~~~~~y~Fp~~~~L~pg~tVtIws~~~g~~~~p--p~dlv~ 114 (151)
T 1ufg_A 63 SMGNWQIRRQ-NGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSP--PTDLVW 114 (151)
T ss_dssp ECSSCEEEEE-ETTSCCEEEECCTTCEECTTCEEEEEESSSSCCCCT--TTEEEE
T ss_pred ccCCCEEEEe-cCCCccEEEEECCCcEECCCCEEEEEeCCCCCCCCC--chhEEE
Confidence 4556655432 3554 3678899999999999999998875322221 356654
No 30
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=35.63 E-value=4.8 Score=41.27 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=20.7
Q ss_pred ccCCCCCcccEEEEEEecCCccceeceecCCCCCce
Q 019801 80 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGT 115 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~ 115 (335)
.+|..|+|+|.. +|--.....+|+.|+|.
T Consensus 192 ~~C~tCHGsGA~-------~Gt~~~~~~tC~tCHGs 220 (669)
T 3pmq_A 192 DTCNSCHSNLAF-------HGGRYNQVETCVTCHNS 220 (669)
T ss_dssp HHHHHHHSSCCT-------TTTTSCSSSCSTTTSST
T ss_pred CcCCCCCCCCCc-------CCccCcCCccCCCCCCC
Confidence 679999999862 23211235789999998
No 31
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=35.52 E-value=45 Score=29.90 Aligned_cols=84 Identities=25% Similarity=0.409 Sum_probs=39.0
Q ss_pred cCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEec-CCcCCc---EEEe
Q 019801 81 KCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEK-GMQNGQ---KITF 156 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~-G~~~G~---~i~~ 156 (335)
.|..|+-.. ...+... .+ .....|+.|.++|..+. .+.| ......+++|.=.| -++.|+ .+.+
T Consensus 136 ~C~~C~~~~---~v~~~~~-~~-~~P~~Cp~C~~~~f~l~-~~~s-------~f~D~Q~ikiQE~pe~vp~G~~Prsi~V 202 (279)
T 1ltl_A 136 ECRGCMRHH---AVTQSTN-MI-TEPSLCSECGGRSFRLL-QDES-------EFLDTQTLKLQEPLENLSGGEQPRQITV 202 (279)
T ss_dssp EETTTCCEE---EEECSSS-SC-CCCSCCTTTCCCCEEEC-GGGC-------EEEEEEEEEEECCSTTCCSSCCCCEEEE
T ss_pred EcCCCCCEE---EEEecCC-cc-cCCCcCCCCCCCCcEEe-cccc-------EEEeeEEEEEecCcccCCCCCCCeEEEE
Confidence 577776432 2223221 11 22356888888774432 1222 23344555554222 233333 1222
Q ss_pred cCCCCCCCCCCcccEEEEEEE
Q 019801 157 PGEADEAPDTVTGDIVFVLQQ 177 (335)
Q Consensus 157 ~G~G~~~~~~~~GDL~v~i~v 177 (335)
.=.++-.....|||-+.+.=+
T Consensus 203 ~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 203 VLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp EEEGGGTTCCCTTCEEEEEEE
T ss_pred EEcccccCccCCCCEEEEEEE
Confidence 223333344678998775543
No 32
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=35.42 E-value=1.5e+02 Score=26.27 Aligned_cols=81 Identities=15% Similarity=0.309 Sum_probs=45.0
Q ss_pred cEEEEEEecCCccceeceecCCCCCceeEEEcC------cCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCC
Q 019801 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETIND------KDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADE 162 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~ 162 (335)
|.+++.-..-| .+......|..|+-...+... -..|+.|..++....... . =..+-|+|++.-.-+.
T Consensus 118 GiV~r~S~V~p-~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l~~~~-s-----~f~D~Q~ikiQE~pe~ 190 (279)
T 1ltl_A 118 GIVRKTDEIRP-RIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDE-S-----EFLDTQTLKLQEPLEN 190 (279)
T ss_dssp EEEEEECCCEE-EEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEECGGG-C-----EEEEEEEEEEECCSTT
T ss_pred EEEEEecceEE-EEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEEeccc-c-----EEEeeEEEEEecCccc
Confidence 45444333333 334456689999977554431 134999998763322110 0 1346688998866555
Q ss_pred CC-CCCcccEEEEEE
Q 019801 163 AP-DTVTGDIVFVLQ 176 (335)
Q Consensus 163 ~~-~~~~GDL~v~i~ 176 (335)
.| |..|--+-|.+.
T Consensus 191 vp~G~~Prsi~V~l~ 205 (279)
T 1ltl_A 191 LSGGEQPRQITVVLE 205 (279)
T ss_dssp CCSSCCCCEEEEEEE
T ss_pred CCCCCCCeEEEEEEc
Confidence 44 445655555553
No 33
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=34.08 E-value=41 Score=25.63 Aligned_cols=41 Identities=17% Similarity=0.432 Sum_probs=28.8
Q ss_pred cccccceecccCC---HHHHhcCCEEEEecCCCCEEEEEeCCCc
Q 019801 185 RKGEDLFYEHTLS---LTEALCGFQFALTHLDGRQLLIKSNPGE 225 (335)
Q Consensus 185 R~g~dL~~~~~Is---l~eAl~G~~~~i~tldG~~l~i~ip~g~ 225 (335)
-++.++++....+ ..+......+.|++++|+.+.|.+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~G~~~~l~v~~~~ 56 (111)
T 3vdz_A 13 IDGDELYIDTDNDGSIDGDELLAMQIFVKTLTGKTITLEVEPSD 56 (111)
T ss_dssp CCGGGEEECTTCSSCCCTGGGGCEEEEEECSSSCEEEEEECTTC
T ss_pred cCCceeccccccccccCcCCCccEEEEEEeCCCCEEEEEeCCCC
Confidence 3466777766554 4455556788889999888888887653
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=27.45 E-value=50 Score=23.80 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=17.7
Q ss_pred HhcCCEEEEecCCCCEEEEEeCCCc
Q 019801 201 ALCGFQFALTHLDGRQLLIKSNPGE 225 (335)
Q Consensus 201 Al~G~~~~i~tldG~~l~i~ip~g~ 225 (335)
-|-|..+.|.+++|+.+.|.+++..
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v~~~~ 30 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEMEPSD 30 (88)
T ss_dssp ----CEEEEEETTSCEEEEECCTTS
T ss_pred cccceEEEEEeCCCCEEEEEECCCC
Confidence 3678899999999998888887653
No 35
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=26.40 E-value=69 Score=24.23 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=17.4
Q ss_pred EEEEEEECCCCCCHHHHHHHH
Q 019801 253 YIHFTVEFPDSLTPDQVKALE 273 (335)
Q Consensus 253 ~i~~~V~~P~~l~~~~~~~l~ 273 (335)
.|++.|.+|..+++++...|+
T Consensus 4 lV~m~V~~P~~~~~~~~~~~~ 24 (96)
T 1mli_A 4 HVKMTVKLPVDMDPAKATQLK 24 (96)
T ss_pred EEEEEeeCCCCCCHHHHHHHH
Confidence 589999999999988766554
No 36
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=26.23 E-value=1.9e+02 Score=23.10 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=42.6
Q ss_pred EEEEecCCcCCcEEEecCC----------CCCC--CCCCcccEEEEEEEecCCc--cccccccceecccCCHHHHhcCCE
Q 019801 141 EVIVEKGMQNGQKITFPGE----------ADEA--PDTVTGDIVFVLQQKEHPK--FKRKGEDLFYEHTLSLTEALCGFQ 206 (335)
Q Consensus 141 ~V~Ip~G~~~G~~i~~~G~----------G~~~--~~~~~GDL~v~i~v~~h~~--f~R~g~dL~~~~~Isl~eAl~G~~ 206 (335)
-|--|.|++.|+.|....+ |+.. .+.+.|.++-.|+.+|-.. |-|.. |..
T Consensus 25 yIlAp~gl~~Gd~I~s~~~~g~~a~~i~~GN~lpL~~iP~Gt~IhNIE~~pG~gg~laRsA----------------Gt~ 88 (136)
T 2ftc_B 25 WIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAA----------------GTC 88 (136)
T ss_pred EEEeecCCcCCCEEEECCcccccccccCcCcEEEecccCCCCEEEEEeccCCCCcEEEEeC----------------CCe
Confidence 4556889999999987333 3322 2456788998888887653 44532 333
Q ss_pred EEEecCCCCEEEEEeCCCc
Q 019801 207 FALTHLDGRQLLIKSNPGE 225 (335)
Q Consensus 207 ~~i~tldG~~l~i~ip~g~ 225 (335)
..|-.-++....|++|.|+
T Consensus 89 a~ii~ke~~~~~vrLPSGe 107 (136)
T 2ftc_B 89 GVLLRKVNGTAIIQLPSKR 107 (136)
T ss_pred EEEEEecCCEEEEECCCCC
Confidence 3332225666777777664
No 37
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=25.30 E-value=2.2e+02 Score=24.96 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=29.6
Q ss_pred eecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEE-----EecCCcCCcEEEecCCCCCCCCCCcccEEEEE
Q 019801 106 QHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVI-----VEKGMQNGQKITFPGEADEAPDTVTGDIVFVL 175 (335)
Q Consensus 106 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~-----Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i 175 (335)
...|+.|..+|...-..+.| ......+++|. +|+|--+-+ +.+.=.++-.....|||-+.+.
T Consensus 168 P~~Cp~C~~~~~~~l~~~~s-------~f~D~Q~ikiQE~pe~vp~G~~Prs-i~v~l~~dLvd~~~PGDrV~vt 234 (268)
T 2vl6_A 168 PTICPKCGKPGQFRLIPEKT-------KLIDWQKAVIQERPEEVPSGQLPRQ-LEIILEDDLVDSARPGDRVKVT 234 (268)
T ss_dssp CSBCTTTCCBCEEEECGGGC-------EEEEEEEEEEECCGGGSCTTSCCCE-EEEEEEGGGTTSSCTTCEEEEE
T ss_pred CccCCCCCCCCCEEEecCcc-------EEEeeEEEEEEeCCCCCCCCCCCcE-EEEEEccCccCcccCCCEEEEE
Confidence 35688888776332212222 23344555553 334433322 2222233333345789987754
No 38
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.79 E-value=29 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.550 Sum_probs=24.2
Q ss_pred eEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCCCCCceeE
Q 019801 64 VICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 117 (335)
Q Consensus 64 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~ 117 (335)
..||.|+-.=...+....|..|+.. .+.+..||.|+-.=.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~--------------f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF--------------IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE--------------EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccch--------------hhccccCcchhhHHH
Confidence 6788888653333334468888774 123566888875433
No 39
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=24.34 E-value=28 Score=36.64 Aligned_cols=33 Identities=33% Similarity=0.704 Sum_probs=19.2
Q ss_pred cCCCCCcccEEEEEEecCCccceeceecCCCCCceeE
Q 019801 81 KCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 117 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~ 117 (335)
.|..|.|.|.+....+..| .+..+|+.|+|+.+
T Consensus 640 ~c~~c~g~G~~~~~~~f~~----~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLP----SVYAPCPVCHGTRY 672 (842)
T ss_dssp BCTTTTTCSEEEETTCSSS----CEEEECTTTTTCCB
T ss_pred ccccccCCCccchhhhcCC----ccceecccccCccc
Confidence 4888888887653323222 23456666666543
No 40
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=23.70 E-value=1.2e+02 Score=24.28 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=35.1
Q ss_pred cccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEcc
Q 019801 193 EHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 237 (335)
Q Consensus 193 ~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g 237 (335)
++.++..+. .=....+.|-+|+.+-|.+|.+..+++|+++....
T Consensus 17 ~v~L~~~~r-~k~R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~dd 60 (143)
T 1gmu_A 17 SVTLPIDVR-VKSRVKVTLNDGRDAGLLLPRGLLLRGGDVLSNEE 60 (143)
T ss_dssp EEEECHHHH-TCSEEEEECTTSCEEEEECCSSCCCCTTCEEECTT
T ss_pred EEEeCHHHH-hcceEEEECCCCCEEEEECCCCcccCCCCEEEECC
Confidence 456666666 33477889999999999999999999999997654
No 41
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.15 E-value=2.6e+02 Score=21.50 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=35.4
Q ss_pred HhcCCEEEEecCCCCEEEEEeCCCcc-----ccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 019801 201 ALCGFQFALTHLDGRQLLIKSNPGEV-----VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI 275 (335)
Q Consensus 201 Al~G~~~~i~tldG~~l~i~ip~g~v-----~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 275 (335)
+|-+..+.|...||..+...|| |.. |.+|+.+.|.= -.+. .-.+|+++-+ ++++|.+.|++.
T Consensus 24 ~lgn~~f~V~l~nG~~~la~i~-GK~Rk~IwI~~GD~VlVe~---~~yd-~~~kg~Iv~r--------~~~~qvk~L~k~ 90 (111)
T 2dgy_A 24 TPGNNLHEVETAQGQRFLVSMP-SKYRKNIWIKRGDFLIVDP---IEEG-EKVKAEISFV--------LCKDHVRSLQKE 90 (111)
T ss_dssp CCSSSEEEEECTTSCEEEEECC-TTCCSCCCCCSSCEEEEEE---CSSC-SSCCEEEEEE--------CCHHHHHHHHHH
T ss_pred eCCCCEEEEEeCCCCEEEEEec-hhhcccEEEcCCCEEEEEe---cccC-CcceEEEEEE--------eCHHHHHHHHHc
Confidence 3334566777788887776665 432 45666666651 1121 0235665443 567887777764
No 42
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.31 E-value=52 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.668 Sum_probs=15.8
Q ss_pred eEcCCCCCCCCCCCCcccCCCCCcc
Q 019801 64 VICSKCSGKGSKSGASMKCSGCQGT 88 (335)
Q Consensus 64 ~~C~~C~G~G~~~~~~~~C~~C~G~ 88 (335)
..||.|+-.=...+....|..|+..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~ 27 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD 27 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE
T ss_pred CCCCCCCCccccCCCceECcccccc
Confidence 4688888664443344568888663
No 43
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.99 E-value=71 Score=24.68 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=14.2
Q ss_pred eeEcCCCCCCCCCCCCcc-cCCCCCccc
Q 019801 63 NVICSKCSGKGSKSGASM-KCSGCQGTG 89 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~-~C~~C~G~G 89 (335)
...|..|.-.-....... .||.|++.-
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 456777754433222234 566666653
No 44
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=21.28 E-value=48 Score=24.57 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEECCCCCCHHHHHHHHHHCC
Q 019801 257 TVEFPDSLTPDQVKALEAILP 277 (335)
Q Consensus 257 ~V~~P~~l~~~~~~~l~~~l~ 277 (335)
.+.||..|++.+|..+-++..
T Consensus 35 ~l~FP~sLs~~eR~~IH~lA~ 55 (86)
T 1msz_A 35 QLEFPPSLNSHDRLRVHQIAE 55 (86)
T ss_dssp EEEECTTCCSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 678999999999998877763
No 45
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=21.20 E-value=43 Score=35.79 Aligned_cols=32 Identities=28% Similarity=0.818 Sum_probs=19.9
Q ss_pred cCCCCCcccEEEEEEecCCccceeceecCCCCCcee
Q 019801 81 KCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
.|..|.|.|.+....+. ......+|..|+|..
T Consensus 755 rC~~C~g~G~i~~em~f----l~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHF----LPDVYVPCEVCHGKR 786 (972)
T ss_dssp BCTTTTTCSEEEECCSS----SCCEEEECTTTTTCC
T ss_pred cccccccccceeeehhc----ccccccccccccccc
Confidence 48889999887543322 223345677777754
No 46
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=20.49 E-value=53 Score=24.02 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=27.9
Q ss_pred eeEcCCCCCCCCCCCC---cccCCCCCcccEEEEEEecCCccceeceecCCCCCceeEEE
Q 019801 63 NVICSKCSGKGSKSGA---SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~ 119 (335)
.+.|-.|+..|-.... ...|-.|...|.+...... | .....|-.|...|.+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~-p----~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL-P----FHTIYCYNCGGKGHFG 59 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC------------------CCCBCSSSSCBSSCG
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCcccccccC-C----CCCCeecccCCCCcCc
Confidence 4679999999976542 2368889888875432211 1 1246799999988754
Done!