BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019802
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXXXXXXG------------------ 209
PR+VRVNTLK D V +Q F Q G
Sbjct: 11 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 70
Query: 210 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 269
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 71 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 130
Query: 270 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
A +L+ +R+ + + +G + E+ DFL + P DP Y EV I
Sbjct: 131 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 172 VRVNTLKMDVDSAVLELGKQFV-VQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQGKAS 230
+RVNTLK +V+ + EL + V V + + G + +Q +AS
Sbjct: 189 IRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEAS 248
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
++ + L PKPG V+D +APG KT HLA LMK KGKI A +++K R++RLKD +K G
Sbjct: 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG 308
Query: 291 AANIEVLHGD 300
++ L D
Sbjct: 309 IKIVKPLVKD 318
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 168 KPRYVRVNTLKMDVDSAVLEL-GKQFVVQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQ 226
K +++RVNTLK++ + L K V++K + P + G Q
Sbjct: 9 KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
+S + L P+ +LD C+APG KT HLA LMK KG IVA E++K R + LK I
Sbjct: 69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNI 128
Query: 287 KLSGAANIEVLHGD 300
G N +++ D
Sbjct: 129 NRMGVLNTIIINAD 142
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGA 291
+ +RVR L + ++ GA
Sbjct: 135 DGKRVRGLLENVERWGA 151
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGA 291
+ +RVR L + ++ GA
Sbjct: 135 DGKRVRGLLENVERWGA 151
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGA 291
+ +RVR L + ++ GA
Sbjct: 135 DGKRVRGLLENVERWGA 151
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXX-XXXXGCDLHVHPLIVNGCVF 224
P PR RVNTLK+ V V L K+ F ++ + P + G ++
Sbjct: 42 PLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIY 101
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q +S AL PKPG V D +APG KT +LA L + G I A ++++ R+R +
Sbjct: 102 IQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRL 161
Query: 285 TIKLSGAANIEVLHGDFLNL 304
+ G N+ + H L++
Sbjct: 162 NLSRLGVLNVILFHSSSLHI 181
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 219 VNGCVFL--------QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
VNG FL Q ++ +V A A KPG KVLD C+APG K+ LAA KGKG +V
Sbjct: 75 VNGKSFLHQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLV 134
Query: 271 ACELNKERVRRLKDTIKLSGAAN 293
E+ +R + L + I+ G +N
Sbjct: 135 TNEIFPKRAKILSENIERWGVSN 157
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
+H P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + ++VA
Sbjct: 217 VHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVA 275
Query: 272 CELNKERVRRLKDTIKLSG 290
+++++R+ R+ D +K G
Sbjct: 276 VDIDEQRLSRVYDNLKRLG 294
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQF------VVQKXXXXXXXXXX 206
S +D +A Q P R +RVNTLK+ V + L+L + +
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 207 XXGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGNKTVHLAA 261
L ++G ++Q +S + AAL AP+ +V D +APG+KT ++A
Sbjct: 81 EDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ---RVXDVAAAPGSKTTQISA 137
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
+G I+A E + RV+ L I G +N+ + H D
Sbjct: 138 RXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
KPG V+D +APG + ++ + GKG+I+AC+L + + ++ L G
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL-----------LPMDPIVGVDFLQG 69
Query: 300 DFLN 303
DF +
Sbjct: 70 DFRD 73
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRL 282
+L AS + AL +PG VLD C+APG KT LA L G + + A +L+ R+ RL
Sbjct: 132 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQTGCCRNLAANDLSPSRIARL 189
Query: 283 K 283
+
Sbjct: 190 Q 190
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRL 282
+L AS + AL +PG VLD C+APG KT LA L G + + A +L+ R+ RL
Sbjct: 131 YLXDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQTGCCRNLAANDLSPSRIARL 188
Query: 283 K 283
+
Sbjct: 189 Q 189
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301
G + LD S G +HLA G ++VA + + E +RR ++ +L+G N+ VL +
Sbjct: 210 GERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA 266
Query: 302 LNL 304
+L
Sbjct: 267 FDL 269
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301
G + LD S G +HLA G ++VA + + E +RR ++ +L+G N+ VL +
Sbjct: 210 GERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA 266
Query: 302 LNL 304
+L
Sbjct: 267 FDL 269
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
K G VLD + G +L+ ++ KGK+ A ++ +E V + + G N+EVL
Sbjct: 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS 95
Query: 300 DFLNLDPKDPAYSEVSLIFCIFTW 323
+ + D + V IF FT+
Sbjct: 96 EENKIPLPD---NTVDFIFMAFTF 116
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
PG KVL+A G +TV LA +I + +++ E + + ++ + +G N++ L +
Sbjct: 37 PGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN 95
Query: 301 FLNLDPKDPAYSEVSLIFCI 320
+L +D ++ + + F +
Sbjct: 96 IFSLPFEDSSFDHIFVCFVL 115
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
+PLI+N S + AAL +P VL+ GN TV L L K K K+VACEL
Sbjct: 13 NPLIIN---------SIIDKAAL--RPTDVVLEVGPGTGNMTVKL--LEKAK-KVVACEL 58
Query: 275 NKERVRRLKDTIKLSG-AANIEVLHGDFLNLD 305
+ V L ++ + A+ ++VL GD L D
Sbjct: 59 DPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 217 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE--- 273
L+ G K +M+ + + PG VL+A S G ++ L+ + +G++++ E
Sbjct: 81 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 140
Query: 274 ----LNKERVRRLKDTIKLSGAA----NIEVLHGD 300
L K+ + +D+ KLS N++ +H D
Sbjct: 141 DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
M+ L KPG KVL+ + G A ++ G +V+ E E + + T++ G
Sbjct: 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG 126
Query: 291 AANIEVLHGD----FLNLDPKDPAYS 312
N+ V+ GD + L P D Y+
Sbjct: 127 YDNVIVIVGDGTLGYEPLAPYDRIYT 152
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
+PG +L+ GN + ++ + GKG + E +++ +++ D +
Sbjct: 109 RPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNL 155
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
G + K ++++ A PG +++A G T+ LA ++ +G++V+ E+ ++ +
Sbjct: 73 GPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAK 132
Query: 281 RLKDTIKLSG 290
+ IK +G
Sbjct: 133 LAWENIKWAG 142
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
G + K ++++ A PG +++A G T+ LA ++ +G++V+ E+ ++ +
Sbjct: 73 GPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAK 132
Query: 281 RLKDTIKLSG 290
+ IK +G
Sbjct: 133 LAWENIKWAG 142
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKG-----KIVACELNKERVRRLK-----DTIKLS 289
KPG ++LD S G T +K KG +IV E E VRR K D +
Sbjct: 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML 142
Query: 290 GAANIEVLHGDFLNLDPKDPAYSEVSL 316
+ + ++ GD P + Y+ + +
Sbjct: 143 DSGQLLIVEGDGRKGYPPNAPYNAIHV 169
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 225 LQGKASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
L+G + ++A AL +PG +VLD + G + A+ + + A +L+++R+
Sbjct: 183 LRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLG 242
Query: 281 RLKDTIKLSGAANIEVLHGDFLNL 304
++ SG + I L D +L
Sbjct: 243 LAREAALASGLSWIRFLRADARHL 266
>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1HSO|B Chain B, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1U3T|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
pdb|1U3T|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
Length = 374
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM----KGKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAIMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDY|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDZ|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDX|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|3HUD|A Chain A, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|3HUD|B Chain B, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1DEH|B Chain B, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1HSZ|A Chain A, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HSZ|B Chain B, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1U3U|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3U|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3V|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
pdb|1U3V|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
Length = 374
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
pdb|1HTB|B Chain B, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
Length = 374
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,465,503
Number of Sequences: 62578
Number of extensions: 298228
Number of successful extensions: 876
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 37
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)