BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019802
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2
Length = 429
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 156/287 (54%), Gaps = 26/287 (9%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK LVYS + +N K YALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
L G+ G K L+ H+ ++ LA+L V V EDL+ + P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV 138
Query: 173 RVNTLKMDVDSAVLEL---------------------GKQFVVQKDDLVPDLLILPPGCD 211
RVNTLK D V GK F++ D L+P+LL+ P D
Sbjct: 139 RVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTD 196
Query: 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
LH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI A
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFA 256
Query: 272 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
+L+ +R+ + + +G + E+ DFL + P DP Y EV I
Sbjct: 257 FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 303
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 153/285 (53%), Gaps = 22/285 (7%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GS+K LVYS + +N K YALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSLKGLVYSSNFQNLKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
L G+ G K L+ H+ ++ LA+L V V EDL+ P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFV 138
Query: 173 RVNTLKMDVDSAVLELGKQ-FVVQ-KDDLVPDL-----------------LILPPGCDLH 213
RVNTLK + A+ +Q F Q + + DL L+ P DLH
Sbjct: 139 RVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLH 198
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
HPL G + LQ KAS + A L+P PG V+DAC+APGNKT ++AAL+K +GKI A +
Sbjct: 199 EHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFD 258
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
+ +R+ + + +G + E+ DFL + P D YS+V I
Sbjct: 259 QDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYIL 303
>sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3
Length = 460
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 151/280 (53%), Gaps = 24/280 (8%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK L ++ + K TYALVC+TLK+ ++ +++ + +L + K +E L +L +D+
Sbjct: 19 GSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELLVLEKKLKENLARVLVHDL 78
Query: 116 LF---GQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV 172
L G IS G ++ ++ HK + +L V+ VKS E+L + P V PR++
Sbjct: 79 LMSKRGLSIS-NGPIKECILRHKTRLNAEFVKLKVKKGVKSHEELA--LKNP-VSLPRWL 134
Query: 173 RVNTLK-----------MDVDSAVLELG-KQFVVQKDDLVPDLLILPPGCDLHVHPLIVN 220
R+NT+K +D S++ ELG +F + DD V +L+ + P + + L
Sbjct: 135 RINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYI--DDCVENLIAIDPSFPIVENSLYKE 192
Query: 221 GCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 278
G V +Q KAS AA LA G ++D C+APGNKT HLAA K I A E + +R
Sbjct: 193 GKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKR 251
Query: 279 VRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
V+ L+ + +SGA N+ + H DF DPK Y V+ I
Sbjct: 252 VQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHIL 291
>sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1
Length = 490
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 149/308 (48%), Gaps = 39/308 (12%)
Query: 36 REAAKVLRLVLRGDARRRAVGSIKSLVYSPSVK-----NKKATYALVCQTLKHLSIIKQV 90
R+A VL + + A+ R GS+++LV + N K YA++ K+ +++V
Sbjct: 5 RDATWVLEDIEKEAAKERISGSMQTLVLKSCKRYKLKSNPKHIYAVLDSCWKYKPYLEKV 64
Query: 91 LDSASILNSKWKRQEELVY-------ILTYDILFGQEISLVGDA--EKFLMLHKGAIQLA 141
+ A IL K++ + ++ + +L Q+ +G + +++ K +
Sbjct: 65 MKKAHILEDIPKKKGKPLFSRLTLLLLCHDLLLSKQKRIQMGKHPIKDYVLKFKSPLHSE 124
Query: 142 LAQLLVRNKVKSIEDLMALYQ-TPDVPKPRYVRVNTLKM----DVDSAVLELGKQFVVQ- 195
+ +L ++ KV+ + +L+ + D+P R++R+N LK + + + EL K+F ++
Sbjct: 125 MVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHPNGETEPVLAELRKKFTLKV 184
Query: 196 ------------KDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 243
D+ +P+L + P + H L +G + +Q +AS A L P P
Sbjct: 185 DKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSD 244
Query: 244 KVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEV 296
V+D+CSAPGNKT H A+ + +I A E + ER + L+ IK++G + NI V
Sbjct: 245 IVIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISV 304
Query: 297 LHGDFLNL 304
GDF L
Sbjct: 305 NVGDFTKL 312
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
+P + +RVN +K D + ++ + + V+K DL D + L G H NG V
Sbjct: 176 IPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH-FFQNGEVS 234
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q ++S +VA AL PK VLDAC+APG K+ H+A LMK KG + + +L+K +V+ +K+
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 285 TIKLSGAANIEVLHGDFLN 303
G + ++H + ++
Sbjct: 295 AADRLG---LTIIHAETMD 310
>sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5P2 PE=5
SV=2
Length = 315
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%)
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHL 259
+P+LL+ P DLH HPL G + LQ +AS + A L P+ KT HL
Sbjct: 1 MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHL 60
Query: 260 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
AAL+K +GKI A +L+ R+ + + +G + E+ DFL + P DP Y EV +
Sbjct: 61 AALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVL 119
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 168 KPRYVRVNTLKMDVDSAVLEL-GKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQ 226
K +++RVNTLK++ + L K V++K L + + P + G Q
Sbjct: 9 KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
+S + L P+ +LD C+APG KT HLA LMK KG IVA E++K R + LK I
Sbjct: 69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNI 128
Query: 287 KLSGAANIEVLHGD 300
G N +++ D
Sbjct: 129 NRMGVLNTIIINAD 142
>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
Length = 476
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL 282
+FLQ S++VA L P+PG K+LD C+APG KT H AALM+ KG+++A + +V +L
Sbjct: 216 IFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKL 275
Query: 283 KDTIKLSGAANIEVLHGD---FLNLDPKD 308
K L G +I D L LD D
Sbjct: 276 KQNASLLGLHSIRAFCFDATKALKLDTTD 304
>sp|Q8EKR0|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B OS=Shewanella
oneidensis (strain MR-1) GN=rsmB PE=3 SV=1
Length = 428
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 160 LYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIV 219
+ Q+ + P P ++R N L D + L K + L D ++L D+ PL +
Sbjct: 160 IQQSHERP-PMWLRNNRLSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFL 218
Query: 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERV 279
G +Q A+ A LAP+ +LDAC+APG K+ HL L + K++A + + +R+
Sbjct: 219 EGAASVQDGAAQWAATLLAPQANELILDACAAPGGKSCHLLEL-EPSIKLIAVDFDAKRL 277
Query: 280 RRLKDTI-KLSGAANIEVLHGDFLNLD 305
R++ + +LS A EV+HGD N+D
Sbjct: 278 ERVQQNLDRLSLKA--EVIHGDAANID 302
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP-------DLLI 205
S+ + + ++ ++P+P +R NTLK + EL + + + +L P L +
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLK----TQRRELAQALINRGVNLEPIGKWSKVGLQV 303
Query: 206 LPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG 265
+ P + G LQ +S + ALAP+P ++LD SAPG K ++AAL K
Sbjct: 304 FESQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKN 363
Query: 266 KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
G I A + NK R + L I G N V + D
Sbjct: 364 TGIIFANDSNKARTKALSANIHRLGVRNAIVCNYD 398
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 154 IEDLMALYQTPDVPKPRYVRVNTLKM---DVDSAVLELG----------KQFVVQKDDLV 200
+ +L+ + +VP+P +R NTLK D+ A++ G K +V D V
Sbjct: 294 LSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSV 353
Query: 201 PDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA 260
P + P + G LQG +S + ALAP+ ++LD C APG KT ++A
Sbjct: 354 P----------IGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMA 403
Query: 261 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
LMK G I+A + N ER++ + + G N + H D
Sbjct: 404 QLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
>sp|B4F1L5|RSMB_PROMH Ribosomal RNA small subunit methyltransferase B OS=Proteus
mirabilis (strain HI4320) GN=rsmB PE=3 SV=1
Length = 422
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQ-KDDLVPDL 203
LL R K E ++ + + P ++RVN + + + L K+ + DD P+
Sbjct: 149 LLTRIKNAYPELWESIIEGNNQKPPMWLRVNQIHHSREQYLALLEKEGISAFSDDHHPNA 208
Query: 204 LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 263
+ L C++H+ P G V +Q +++ A LAP+ ++LD C+APG KT H+ +
Sbjct: 209 IRLETPCNVHLLPGFNEGWVTVQDRSAQRCAELLAPQNNEQILDLCAAPGGKTTHILEIA 268
Query: 264 KGKGKIVACELNKERVRRLKDTI 286
K ++A +++++R+ R+K+ +
Sbjct: 269 P-KAHVLAIDIDEQRLARVKENL 290
>sp|Q8TEA1|NSUN6_HUMAN Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1
Length = 469
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL 282
+FLQ S++V+ L P+PG K+LD C+APG KT H+AALM +G+++A + +V ++
Sbjct: 216 LFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKI 275
Query: 283 KDTIKLSGAANIEVLHGD 300
K L G +I D
Sbjct: 276 KQNALLLGLNSIRAFCFD 293
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP-------DLLIL 206
+ +L+ + +VP+P +R NTLK + +L + + + +L P L++
Sbjct: 279 LSELIEFLEANEVPRPITLRTNTLK----TRRRDLAQLLINRGVNLDPLGKWSKSGLVVY 334
Query: 207 PPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK 266
+ P + G LQG +S + ALAP+ ++LD C APG KT ++A LMK
Sbjct: 335 DSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNT 394
Query: 267 GKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
G I+A + N +R++ + + G N + H D
Sbjct: 395 GVILANDANADRLKSVVGNLHRLGVTNTIISHYD 428
>sp|Q6D4C8|RSMF_ERWCT Ribosomal RNA small subunit methyltransferase F OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmF PE=3 SV=1
Length = 484
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 30/165 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 212
S+ED +A Q P R +RVNTLK+ VD A L+L + + Q + + P C
Sbjct: 26 SMEDFIAACQRP---LRRSIRVNTLKISVD-AFLQLAQPYGWQLEPI--------PWCQE 73
Query: 213 HVHPL--------------IVNGCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNK 255
L ++G ++Q +S + A+AL PG +LD +APG+K
Sbjct: 74 GFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPASALFHHNDAPG-TILDVAAAPGSK 132
Query: 256 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
T +AA + +G IVA E + RV+ L I G +N + H D
Sbjct: 133 TTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFD 177
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 275
P G +Q ++ VA L P+P + D C+APG KT H+A LM +G+I A + +
Sbjct: 227 PGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRH 286
Query: 276 KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309
R+++L T + G +I++ GD K P
Sbjct: 287 GWRLQKLAVTQQRLGLTSIKIWEGDLTQPGVKPP 320
>sp|A1SWV0|RSMF_PSYIN Ribosomal RNA small subunit methyltransferase F OS=Psychromonas
ingrahamii (strain 37) GN=rsmF PE=3 SV=1
Length = 481
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 30/172 (17%)
Query: 146 LVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLI 205
++ N++K IED +A+ Q P R +RVNTLK+ V+ + +Q V L
Sbjct: 18 ILPNQLK-IEDFIAVCQRP---LRRAIRVNTLKISVEKFQIRAQEQGWV---------LT 64
Query: 206 LPPGC------DLHVHPLIVN-------GCVFLQGKASSMVAAAL----APKPGWKVLDA 248
P C +L P + G ++Q +S + AAL P VLDA
Sbjct: 65 AIPWCAEGFWIELQEEPTPLGNSAEHLGGLCYIQEASSMLPVAALFHFFTPTTQSIVLDA 124
Query: 249 CSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
+APG+KT +AA M G I+ E + R++ L I+ G N+ + H D
Sbjct: 125 AAAPGSKTTQIAAKMNNSGLIIGNEFSSSRIKMLHANIQRCGIKNVALTHFD 176
>sp|Q88RR3|RSMB_PSEPK Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
putida (strain KT2440) GN=rsmB PE=3 SV=1
Length = 436
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D ++L CD+ P G V +Q +A+ + A L PG +VLDAC APG KT HL
Sbjct: 204 DGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQRVLDACCAPGGKTCHLLE 263
Query: 262 LMKGKGKIVACELNKERVRRLKDTI 286
G +VA +L +R+ R+++ +
Sbjct: 264 AEAGLANMVAIDLEAKRLTRVRENL 288
>sp|B7LRQ5|RSMB_ESCF3 Ribosomal RNA small subunit methyltransferase B OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmB PE=3 SV=1
Length = 429
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIIEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +HV P G V +Q ++ A LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHVLPGFEEGWVTVQDASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmB PE=3 SV=1
Length = 434
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKD-DLVPDLLILPPGCDLH 213
E L AL + P +RVN + D+ + EL + + + D D + L D+
Sbjct: 156 EQLDALCAANNAHPPMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVR 215
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
P G V +Q +A+ + A L PG +VLDAC APG KT HL ++VA +
Sbjct: 216 ELPGFAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVD 275
Query: 274 LNKERVRRLKDTIKLSG 290
L + R+ R+++ ++ G
Sbjct: 276 LEESRLVRVRENLQRLG 292
>sp|B7NDR0|RSMB_ECOLU Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +HV P G V +Q ++ A LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHVLPGFEEGWVTVQDASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2
Length = 480
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 38/189 (20%)
Query: 128 EKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLE 187
E FL + + A+ LA ++D +A Q P R +RVNTLK+ VD+ + +
Sbjct: 11 EAFLDVMREAMPAGLA----------MDDFIAACQRP---LRRSIRVNTLKISVDAFLAQ 57
Query: 188 LG-------------KQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVA 234
+ + F +++DD D L L + H ++G ++Q +S +
Sbjct: 58 VAPYGWQLTPVPWCPEGFWIERDD--EDALPLGSTAE---H---LSGQFYIQEASSMLPV 109
Query: 235 AAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
AAL P +V+D +APG+KT +AALM+ +G I+A E + RV+ L I G
Sbjct: 110 AALFADGNTPA-RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGI 168
Query: 292 ANIEVLHGD 300
N+ + H D
Sbjct: 169 HNVGLTHFD 177
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 156 DLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP-------DLLILPP 208
+ M ++ ++ +P +R NTLK + +L + V + +L P L I
Sbjct: 257 EAMEFFEANEIARPITIRTNTLK----TRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDS 312
Query: 209 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK 268
+ P + G LQ +S + AL P ++LD +APG KT +++A+MK G
Sbjct: 313 QVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGC 372
Query: 269 IVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
+ A + NK R + L I G N V + D
Sbjct: 373 VFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
>sp|P45679|RSMB_COXBU Ribosomal RNA small subunit methyltransferase B OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=rsmB
PE=3 SV=1
Length = 430
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQFVVQKD-DLVPDLLILPPGCDLHVHPLIVNGCVFLQG 227
P +RVN K+ + + L ++ + K D +P + L C +H P G ++Q
Sbjct: 165 PMTLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQD 224
Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
A A L + VLDAC+APG+KT H+ + +VA + NK+R+ R+K+ I
Sbjct: 225 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENIT 284
Query: 288 LSG--AANIEVLHGDFLNLD 305
G +++ L D +D
Sbjct: 285 RLGLRQEHLQCLLADVSQID 304
>sp|Q8DDE5|RSMB_VIBVU Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain CMCP6) GN=rsmB PE=3 SV=1
Length = 426
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHVHPLIVNGCVFLQ 226
P ++RVN D D L+L K + D + L CD+H P G V +Q
Sbjct: 170 PMWLRVNHAHHDRDE-YLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQ 228
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
A+ + L PK G +LD C+APG KT H+ + + ++VA + +++R++R+ + +
Sbjct: 229 DAAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAR-EVVALDCDEQRLKRVTENL 287
Query: 287 K 287
K
Sbjct: 288 K 288
>sp|Q88B41|RSMB_PSESM Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rsmB PE=3 SV=1
Length = 448
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D ++L CD+ P G + +Q +A+ + A L PG +VLDAC APG KT HL
Sbjct: 204 DGIVLAEPCDVRSLPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLE 263
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ +VA +L +R+ R+++ ++ G
Sbjct: 264 VQPQLSGVVAVDLEAKRLVRVRENLERLG 292
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVHDNLKRLG 294
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 32/166 (19%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD---SAVLELGKQ----------FVVQKDDL 199
S +D +A Q P R +RVNTLK+ VD S V G Q F ++++D
Sbjct: 25 SFDDFIAACQRP---LRRSIRVNTLKISVDDFLSLVAPYGWQLAPVPWCAEGFWIERED- 80
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
D L L + H ++G ++Q +S + AAL P+ +V+D +APG+
Sbjct: 81 -DDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADNRQPE---RVMDVAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
KT +AA M G I+A E + RV+ L I G +N+ + H D
Sbjct: 131 KTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|Q7MGK4|RSMB_VIBVY Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain YJ016) GN=rsmB PE=3 SV=1
Length = 426
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHVHPLIVNGCVFLQ 226
P ++RVN D D L+L K + D + L CD+H P G V +Q
Sbjct: 170 PMWLRVNHAHHDRDE-YLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQ 228
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
A+ + L PK G +LD C+APG KT H+ + + ++VA + +++R++R+ + +
Sbjct: 229 DAAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAR-EVVALDCDEQRLKRVTENL 287
Query: 287 K 287
K
Sbjct: 288 K 288
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 30/153 (19%)
Query: 167 PKPRYVRVNTLKMDVDSAVLE---LGKQF-----------VVQKDDLVPDLLILPPGCDL 212
P R +RVNTLK+ V V++ LG QF + + D+ VP L
Sbjct: 35 PLRRSIRVNTLKISVSDFVMQMQPLGWQFDAVPWCETGFWLTRADESVP----------L 84
Query: 213 HVHPLIVNGCVFLQGKASSM--VAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKG 267
++G ++Q +ASSM V A A K +LDA +APG+KT +AALM +G
Sbjct: 85 GNTAEHLSGLFYIQ-EASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQG 143
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
+VA E + R++ L I+ G N+ + H D
Sbjct: 144 MLVANEYSSSRLKVLSANIQRCGVTNVGMTHFD 176
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 34/167 (20%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDD 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
+KT +AA M +G I+A E + RV+ L I G +N+ + H D
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 219 VNGCVFLQGKASSMVAAALAPKP-----GWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
+ G ++Q +S + AL P+P +LD SAPG+KT LAA+M +G +VA E
Sbjct: 87 IQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASAPGSKTTQLAAMMNNQGLLVANE 146
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGD 300
+ RV+ L ++ GA+N+ + H D
Sbjct: 147 YSSSRVKVLHANVQRMGASNLALTHFD 173
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 34/167 (20%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKM---DVDSAVLELGKQ----------FVVQKD-- 197
S +D +A Q P R +RVNTLK+ D S V G Q F +++D
Sbjct: 25 SFDDFIAACQRP---LRRSIRVNTLKISVADFLSLVAPYGWQLTPVPWCEEGFWIERDGD 81
Query: 198 DLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM--VAAALA--PKPGWKVLDACSAPG 253
D +P L ++G ++Q +ASSM VAA A P+P +V+D +APG
Sbjct: 82 DALP----------LGSTAEHLSGLFYIQ-EASSMLPVAALFADNPQPE-RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
+KT +AA M G I+A E + RV+ L I G +N+ + H D
Sbjct: 130 SKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|B6I202|RSMB_ECOSE Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SE11) GN=rsmB PE=3 SV=1
Length = 429
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|B7M0Z4|RSMB_ECO8A Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O8 (strain IAI1) GN=rsmB PE=3 SV=1
Length = 429
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|B7LHZ0|RSMB_ECO55 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|A7ZSH7|RSMB_ECO24 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|Q31VY8|RSMB_SHIBS Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmB PE=3 SV=1
Length = 429
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmB PE=3 SV=1
Length = 434
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D L L CD+H P G V +Q A+ + LAP+ G +LD C+APG KT H+
Sbjct: 212 DALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILE 271
Query: 262 LMKGKGKIVACELNKERVRRLKDTIK 287
+ ++VA + ++ R++R+++ ++
Sbjct: 272 RTP-ESQVVAIDCDETRLKRVRENLQ 296
>sp|B7UK12|RSMB_ECO27 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++RVN DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|Q3IHA0|RSMF_PSEHT Ribosomal RNA small subunit methyltransferase F
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rsmF PE=3 SV=2
Length = 482
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 29/153 (18%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCD--------------- 211
P + +RVNTLK+ V KQ+ QK+ L+ + P C+
Sbjct: 35 PLRKSIRVNTLKISVTEF-----KQYAKQKNWLLTPI----PWCEEGFWLERPAAEEQNL 85
Query: 212 -LHVHPLIVNGCVFLQGKASSM---VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 267
L L ++G +++Q +ASSM +A + + VLD SAPG+KT LAALM +G
Sbjct: 86 ALGNTDLHLSGAMYVQ-EASSMLPPIALKQSIEHTNYVLDMASAPGSKTSQLAALMNNQG 144
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
+VA EL+ R++ L T+K G N + H D
Sbjct: 145 VLVANELSSSRLKVLSATLKRMGVGNCALSHFD 177
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 32/166 (19%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 199
S +D +A Q P R +RVNTLK V + + + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSVADFLRLTAPYGWTLTPIPWCEEGFWIERDDE 81
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
LP G H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 82 D----ALPLGSTAE-H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
KT +AA M +G I+A E + RV+ L I G +N+ + H D
Sbjct: 131 KTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 32/166 (19%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 199
S +D +A Q P R +RVNTLK V + + + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSVADFLRLTAPYGWTLTPIPWCEEGFWIERDDE 81
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
LP G H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 82 D----ALPLGSTAE-H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
KT +AA M +G I+A E + RV+ L I G +N+ + H D
Sbjct: 131 KTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176
>sp|Q7UBD3|RSMB_SHIFL Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri GN=rsmB PE=3 SV=1
Length = 429
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++R+N DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIAEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRIYDNLKRLG 294
>sp|P36929|RSMB_ECOLI Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12) GN=rsmB PE=1 SV=2
Length = 429
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++R+N DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|B1IQ11|RSMB_ECOLC Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmB PE=3 SV=1
Length = 429
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++R+N DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|A8A593|RSMB_ECOHS Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O9:H4 (strain HS) GN=rsmB PE=3 SV=1
Length = 429
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++R+N DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|B1X6E1|RSMB_ECODH Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / DH10B) GN=rsmB PE=3 SV=1
Length = 429
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++R+N DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|C4ZUE3|RSMB_ECOBW Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmB PE=3 SV=1
Length = 429
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS--AVL-ELGKQFVVQKDDLVP 201
LL R + E ++ + + P ++R+N DS A+L E G + D P
Sbjct: 149 LLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHAD--YP 206
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
D + L +H P +G V +Q ++ LAP+ G +LD C+APG KT H+
Sbjct: 207 DAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + ++VA +++++R+ R+ D +K G
Sbjct: 267 VAP-EAQVVAVDIDEQRLSRVYDNLKRLG 294
>sp|A1S788|RSMF_SHEAM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rsmF PE=3
SV=1
Length = 467
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 172 VRVNTLKMDVDS--AVLE-LGKQF--VVQKDD----LVPDLLILPPGCDLHVHPLIVNGC 222
+RVNTLK+ D+ A+LE G QF V +D VPD PG +L H G
Sbjct: 37 IRVNTLKITSDALRAILEPRGWQFEPVPWCEDGFWVTVPD--DCQPG-NLTEH---YQGL 90
Query: 223 VFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
++Q +S M AL +P +LD SAPG+KT LAALM +G I+A E + R +
Sbjct: 91 FYIQEASSMMPPCALFMDKEPRQLLLDVASAPGSKTTQLAALMHNQGLIIANEYSASRTK 150
Query: 281 RLKDTIKLSGAANIEVLHGD 300
L ++ G AN+ + D
Sbjct: 151 ALHANLQRMGVANVAITQFD 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,609,717
Number of Sequences: 539616
Number of extensions: 4458117
Number of successful extensions: 13177
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 12732
Number of HSP's gapped (non-prelim): 487
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)