Query 019802
Match_columns 335
No_of_seqs 282 out of 3148
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14903 16S rRNA methyltransf 100.0 4.5E-50 9.7E-55 391.4 26.1 289 33-329 4-323 (431)
2 PRK14901 16S rRNA methyltransf 100.0 6.8E-49 1.5E-53 384.4 28.3 290 33-329 2-341 (434)
3 PRK10901 16S rRNA methyltransf 100.0 2.3E-46 5E-51 365.8 28.7 287 32-329 2-329 (427)
4 TIGR00563 rsmB ribosomal RNA s 100.0 1.7E-45 3.7E-50 359.7 27.9 284 35-328 1-324 (426)
5 PRK14902 16S rRNA methyltransf 100.0 1.6E-44 3.4E-49 354.8 27.1 291 32-329 3-336 (444)
6 PRK14904 16S rRNA methyltransf 100.0 6.3E-44 1.4E-48 350.4 27.2 288 32-329 2-334 (445)
7 COG0144 Sun tRNA and rRNA cyto 100.0 4.3E-36 9.4E-41 285.8 17.5 170 157-329 71-245 (355)
8 PRK11933 yebU rRNA (cytosine-C 100.0 4.9E-36 1.1E-40 293.1 17.8 169 158-329 23-199 (470)
9 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 3.7E-35 8.1E-40 271.6 11.1 165 162-329 3-172 (283)
10 KOG2360 Proliferation-associat 100.0 6.1E-34 1.3E-38 263.1 15.7 286 37-332 3-303 (413)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 2.2E-30 4.7E-35 238.0 16.0 154 172-329 1-156 (264)
12 KOG1122 tRNA and rRNA cytosine 100.0 1.7E-30 3.7E-35 242.7 13.6 173 154-329 151-328 (460)
13 KOG2198 tRNA cytosine-5-methyl 99.8 1.9E-19 4E-24 167.3 8.0 116 219-334 133-257 (375)
14 cd00620 Methyltransferase_Sun 99.6 3.6E-14 7.8E-19 116.0 11.1 113 32-149 1-121 (126)
15 COG2226 UbiE Methylase involve 99.5 1.6E-13 3.5E-18 123.1 11.1 84 234-318 44-127 (238)
16 TIGR01951 nusB transcription a 99.5 3.2E-13 6.9E-18 110.8 11.9 113 34-149 4-125 (129)
17 cd00619 Terminator_NusB Transc 99.5 4.4E-13 9.6E-18 110.2 11.8 113 34-149 4-125 (130)
18 PRK00202 nusB transcription an 99.5 5.3E-13 1.1E-17 110.7 12.0 100 33-135 5-110 (137)
19 PF01029 NusB: NusB family; I 99.5 5.7E-13 1.2E-17 110.0 11.5 114 32-148 1-130 (134)
20 PF01209 Ubie_methyltran: ubiE 99.4 6E-13 1.3E-17 120.0 9.1 87 232-318 38-124 (233)
21 TIGR00080 pimt protein-L-isoas 99.3 2.4E-11 5.2E-16 108.4 12.7 92 230-324 66-157 (215)
22 COG2242 CobL Precorrin-6B meth 99.3 3.8E-11 8.3E-16 102.8 11.2 87 231-321 24-110 (187)
23 PRK13942 protein-L-isoaspartat 99.3 6.6E-11 1.4E-15 105.4 12.7 98 221-321 56-153 (212)
24 cd00447 NusB_Sun RNA binding d 99.2 1.2E-10 2.6E-15 95.5 11.9 112 34-149 2-124 (129)
25 PF08704 GCD14: tRNA methyltra 99.2 1.5E-10 3.2E-15 104.9 12.3 95 229-323 28-123 (247)
26 PRK13944 protein-L-isoaspartat 99.2 2.1E-10 4.6E-15 101.6 12.8 89 231-322 62-151 (205)
27 PF01135 PCMT: Protein-L-isoas 99.2 1.9E-10 4.1E-15 101.9 10.4 101 221-324 52-152 (209)
28 TIGR02752 MenG_heptapren 2-hep 99.1 5E-10 1.1E-14 100.7 12.0 83 232-314 36-118 (231)
29 PRK00050 16S rRNA m(4)C1402 me 99.1 8.6E-11 1.9E-15 109.0 7.1 92 233-326 11-103 (296)
30 PF05175 MTS: Methyltransferas 99.1 2.6E-10 5.7E-15 98.0 9.5 94 227-325 17-110 (170)
31 PTZ00146 fibrillarin; Provisio 99.1 3.8E-10 8.3E-15 104.0 10.6 92 229-322 114-211 (293)
32 PF13847 Methyltransf_31: Meth 99.1 6.8E-10 1.5E-14 93.4 11.2 81 240-323 2-83 (152)
33 PLN02233 ubiquinone biosynthes 99.1 6.1E-10 1.3E-14 102.3 11.6 83 233-315 65-150 (261)
34 COG2519 GCD14 tRNA(1-methylade 99.1 4.4E-10 9.6E-15 100.5 10.3 101 218-322 71-172 (256)
35 TIGR01177 conserved hypothetic 99.1 5E-10 1.1E-14 106.3 11.1 90 230-325 171-260 (329)
36 PF09445 Methyltransf_15: RNA 99.1 1.2E-10 2.5E-15 98.7 6.0 83 243-329 1-85 (163)
37 PRK04266 fibrillarin; Provisio 99.1 5E-10 1.1E-14 100.6 10.3 87 230-322 59-150 (226)
38 PRK13943 protein-L-isoaspartat 99.1 8.9E-10 1.9E-14 103.8 12.1 86 234-322 73-158 (322)
39 PRK03522 rumB 23S rRNA methylu 99.1 3.4E-10 7.5E-15 106.8 9.0 85 236-326 168-253 (315)
40 COG2518 Pcm Protein-L-isoaspar 99.1 1.5E-09 3.2E-14 95.0 12.2 96 220-321 51-146 (209)
41 PRK09634 nusB transcription an 99.1 1.5E-09 3.4E-14 95.1 11.2 66 67-135 110-180 (207)
42 PRK13168 rumA 23S rRNA m(5)U19 99.0 9.2E-10 2E-14 108.6 10.6 86 235-326 291-380 (443)
43 PRK00312 pcm protein-L-isoaspa 99.0 2.7E-09 5.8E-14 94.9 12.3 97 222-324 59-155 (212)
44 KOG1540 Ubiquinone biosynthesi 99.0 2E-09 4.4E-14 95.8 10.4 85 233-317 92-184 (296)
45 PRK07402 precorrin-6B methylas 99.0 2.5E-09 5.4E-14 94.0 11.0 82 221-303 20-101 (196)
46 PRK00107 gidB 16S rRNA methylt 99.0 2.9E-09 6.3E-14 92.9 11.1 74 240-315 44-117 (187)
47 PRK15128 23S rRNA m(5)C1962 me 99.0 8.5E-10 1.8E-14 106.9 8.4 103 215-325 197-305 (396)
48 PRK00377 cbiT cobalt-precorrin 99.0 3.2E-09 6.8E-14 93.5 11.0 86 232-320 31-118 (198)
49 TIGR02469 CbiT precorrin-6Y C5 99.0 6.3E-09 1.4E-13 83.6 11.5 83 234-320 12-95 (124)
50 PF12847 Methyltransf_18: Meth 99.0 4E-09 8.7E-14 83.5 9.9 76 241-321 1-78 (112)
51 COG4123 Predicted O-methyltran 99.0 2E-09 4.4E-14 96.8 9.0 98 229-328 32-130 (248)
52 TIGR00138 gidB 16S rRNA methyl 99.0 5.2E-09 1.1E-13 90.9 10.5 75 241-320 42-116 (181)
53 PRK11873 arsM arsenite S-adeno 99.0 5.1E-09 1.1E-13 96.7 10.9 78 237-314 73-150 (272)
54 PRK00121 trmB tRNA (guanine-N( 98.9 2.7E-09 5.9E-14 94.3 8.1 79 241-320 40-121 (202)
55 PF13659 Methyltransf_26: Meth 98.9 2E-09 4.4E-14 86.0 6.5 80 242-326 1-83 (117)
56 TIGR03533 L3_gln_methyl protei 98.9 8.2E-09 1.8E-13 96.0 11.3 84 239-327 119-203 (284)
57 COG2230 Cfa Cyclopropane fatty 98.9 7.6E-09 1.7E-13 94.8 10.1 85 228-317 59-144 (283)
58 smart00650 rADc Ribosomal RNA 98.9 1E-08 2.2E-13 88.0 10.3 84 233-324 5-88 (169)
59 PRK11207 tellurite resistance 98.9 1.5E-08 3.2E-13 89.2 11.0 84 230-317 19-102 (197)
60 PRK08287 cobalt-precorrin-6Y C 98.9 1.7E-08 3.6E-13 88.0 11.2 90 225-320 15-104 (187)
61 TIGR00479 rumA 23S rRNA (uraci 98.9 5.5E-09 1.2E-13 102.8 9.1 86 234-325 285-374 (431)
62 PLN02244 tocopherol O-methyltr 98.9 1.4E-08 3.1E-13 96.8 11.2 75 240-316 117-192 (340)
63 PRK10909 rsmD 16S rRNA m(2)G96 98.9 9.3E-09 2E-13 90.5 9.2 79 240-323 52-131 (199)
64 TIGR00537 hemK_rel_arch HemK-r 98.9 1.5E-08 3.3E-13 87.6 10.4 89 227-324 5-93 (179)
65 TIGR03534 RF_mod_PrmC protein- 98.9 1.7E-08 3.7E-13 91.6 10.9 83 241-328 87-169 (251)
66 PRK14967 putative methyltransf 98.9 1.7E-08 3.7E-13 90.5 10.6 88 230-324 22-112 (223)
67 PF01170 UPF0020: Putative RNA 98.9 2E-08 4.2E-13 87.1 10.4 94 228-324 15-117 (179)
68 PF13649 Methyltransf_25: Meth 98.8 4.7E-09 1E-13 82.0 5.8 69 245-314 1-71 (101)
69 PRK11805 N5-glutamine S-adenos 98.8 2.8E-08 6E-13 93.4 11.3 81 242-327 134-215 (307)
70 COG2263 Predicted RNA methylas 98.8 3.5E-08 7.5E-13 84.6 10.7 89 227-324 29-119 (198)
71 PRK15001 SAM-dependent 23S rib 98.8 3.1E-08 6.6E-13 95.2 11.5 93 227-324 214-309 (378)
72 PF02353 CMAS: Mycolic acid cy 98.8 1.7E-08 3.6E-13 93.2 9.0 83 230-317 51-134 (273)
73 TIGR03704 PrmC_rel_meth putati 98.8 2.2E-08 4.8E-13 91.4 9.5 82 242-328 87-168 (251)
74 COG2265 TrmA SAM-dependent met 98.8 1.2E-08 2.6E-13 99.7 7.9 90 232-327 284-376 (432)
75 COG2813 RsmC 16S RNA G1207 met 98.8 4.3E-08 9.4E-13 90.2 10.8 92 227-324 144-235 (300)
76 TIGR00091 tRNA (guanine-N(7)-) 98.8 1.7E-08 3.7E-13 88.6 7.8 78 241-322 16-96 (194)
77 PF05958 tRNA_U5-meth_tr: tRNA 98.8 1.1E-08 2.5E-13 97.8 7.1 91 233-327 189-292 (352)
78 TIGR02085 meth_trns_rumB 23S r 98.8 2.1E-08 4.5E-13 96.8 8.9 83 237-325 229-312 (374)
79 PRK14966 unknown domain/N5-glu 98.8 5.8E-08 1.2E-12 93.8 11.6 92 231-327 240-333 (423)
80 KOG2915 tRNA(1-methyladenosine 98.8 6.9E-08 1.5E-12 86.8 10.8 93 230-323 94-187 (314)
81 TIGR00006 S-adenosyl-methyltra 98.8 2.9E-08 6.4E-13 92.4 8.6 92 233-326 12-105 (305)
82 PLN02781 Probable caffeoyl-CoA 98.7 3E-08 6.6E-13 89.6 8.5 90 229-321 56-152 (234)
83 PRK14121 tRNA (guanine-N(7)-)- 98.7 4.6E-08 1E-12 93.8 10.1 84 236-323 117-202 (390)
84 PRK09328 N5-glutamine S-adenos 98.7 1E-07 2.2E-12 87.9 12.0 86 238-328 105-190 (275)
85 PLN02476 O-methyltransferase 98.7 2.9E-08 6.4E-13 91.3 8.3 96 224-322 101-203 (278)
86 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2E-08 4.4E-13 104.3 8.1 104 215-326 515-621 (702)
87 TIGR00536 hemK_fam HemK family 98.7 7.8E-08 1.7E-12 89.5 11.1 80 242-326 115-195 (284)
88 COG2890 HemK Methylase of poly 98.7 7.6E-08 1.6E-12 89.2 10.5 78 244-327 113-190 (280)
89 PTZ00338 dimethyladenosine tra 98.7 6.9E-08 1.5E-12 90.1 10.2 96 223-326 18-114 (294)
90 PRK00274 ksgA 16S ribosomal RN 98.7 5.2E-08 1.1E-12 90.1 9.1 92 225-325 26-117 (272)
91 TIGR00477 tehB tellurite resis 98.7 7.8E-08 1.7E-12 84.5 9.7 81 230-315 19-99 (195)
92 TIGR02143 trmA_only tRNA (urac 98.7 4.5E-08 9.8E-13 93.7 8.3 82 242-329 198-293 (353)
93 PRK08317 hypothetical protein; 98.7 1.8E-07 4E-12 83.7 11.8 81 234-315 12-92 (241)
94 PRK15451 tRNA cmo(5)U34 methyl 98.7 7E-08 1.5E-12 87.9 9.2 74 239-314 54-129 (247)
95 PF02475 Met_10: Met-10+ like- 98.7 7E-08 1.5E-12 84.9 8.8 84 239-327 99-183 (200)
96 PRK14896 ksgA 16S ribosomal RN 98.7 1E-07 2.2E-12 87.5 10.2 93 223-325 11-103 (258)
97 COG4122 Predicted O-methyltran 98.7 7E-08 1.5E-12 85.6 8.7 93 227-322 45-141 (219)
98 PRK14968 putative methyltransf 98.7 1.7E-07 3.7E-12 81.1 10.9 89 230-325 12-102 (188)
99 TIGR00438 rrmJ cell division p 98.7 7.4E-08 1.6E-12 84.0 8.7 78 236-327 27-112 (188)
100 COG1041 Predicted DNA modifica 98.7 6.5E-08 1.4E-12 90.6 8.6 107 212-326 170-277 (347)
101 PRK10258 biotin biosynthesis p 98.7 4.7E-08 1E-12 89.1 7.6 83 224-314 25-107 (251)
102 PTZ00098 phosphoethanolamine N 98.7 1.2E-07 2.6E-12 87.2 10.3 95 218-316 28-123 (263)
103 PRK09489 rsmC 16S ribosomal RN 98.7 1.8E-07 3.8E-12 89.2 11.5 89 227-322 182-270 (342)
104 PRK05031 tRNA (uracil-5-)-meth 98.7 7.5E-08 1.6E-12 92.6 8.5 80 242-329 207-302 (362)
105 TIGR00095 RNA methyltransferas 98.6 7.3E-08 1.6E-12 84.3 7.5 81 241-325 49-133 (189)
106 PLN02396 hexaprenyldihydroxybe 98.6 9.9E-08 2.1E-12 90.1 8.7 76 238-316 128-204 (322)
107 PRK14103 trans-aconitate 2-met 98.6 1.4E-07 3E-12 86.3 9.4 75 233-316 21-95 (255)
108 PF03602 Cons_hypoth95: Conser 98.6 4.4E-08 9.5E-13 85.2 5.7 81 240-325 41-126 (183)
109 PF08241 Methyltransf_11: Meth 98.6 9.1E-08 2E-12 72.8 6.6 64 246-314 1-64 (95)
110 PRK01683 trans-aconitate 2-met 98.6 2.5E-07 5.3E-12 84.7 10.6 83 225-314 15-97 (258)
111 PRK05785 hypothetical protein; 98.6 1E-07 2.2E-12 85.7 7.7 66 241-316 51-116 (226)
112 PRK06202 hypothetical protein; 98.6 1.6E-07 3.6E-12 84.5 8.8 81 234-317 53-136 (232)
113 TIGR00740 methyltransferase, p 98.6 2.9E-07 6.4E-12 83.3 10.4 73 240-314 52-126 (239)
114 PRK11036 putative S-adenosyl-L 98.6 1.5E-07 3.3E-12 86.0 8.6 72 240-314 43-116 (255)
115 PRK04338 N(2),N(2)-dimethylgua 98.6 1.8E-07 4E-12 90.3 9.4 91 230-324 45-136 (382)
116 COG1092 Predicted SAM-dependen 98.6 8.3E-08 1.8E-12 92.2 7.0 104 216-327 195-304 (393)
117 PRK00216 ubiE ubiquinone/menaq 98.6 4.9E-07 1.1E-11 81.1 11.5 83 232-314 42-125 (239)
118 COG0781 NusB Transcription ter 98.6 2.7E-07 5.9E-12 77.3 9.0 102 33-136 12-124 (151)
119 PRK12335 tellurite resistance 98.6 3.6E-07 7.8E-12 85.1 10.4 77 236-317 115-191 (287)
120 TIGR03587 Pse_Me-ase pseudamin 98.6 3.1E-07 6.8E-12 81.3 9.2 71 238-315 40-110 (204)
121 TIGR02021 BchM-ChlM magnesium 98.6 4E-07 8.7E-12 81.3 9.8 72 239-316 53-125 (219)
122 KOG2730 Methylase [General fun 98.6 4.9E-08 1.1E-12 85.2 3.7 108 218-329 69-181 (263)
123 PHA03412 putative methyltransf 98.6 2.2E-07 4.7E-12 83.3 7.9 79 240-327 48-128 (241)
124 PRK11088 rrmA 23S rRNA methylt 98.5 4E-07 8.6E-12 84.2 9.7 74 240-318 84-159 (272)
125 PLN03075 nicotianamine synthas 98.5 3.5E-07 7.7E-12 84.8 9.3 77 241-320 123-202 (296)
126 PF01596 Methyltransf_3: O-met 98.5 1.2E-07 2.6E-12 83.9 5.4 90 230-322 34-130 (205)
127 TIGR00755 ksgA dimethyladenosi 98.5 4.1E-07 8.8E-12 83.2 9.2 89 229-324 17-105 (253)
128 COG0742 N6-adenine-specific me 98.5 3E-07 6.6E-12 79.3 7.7 80 240-324 42-125 (187)
129 PRK11705 cyclopropane fatty ac 98.5 4.8E-07 1E-11 87.6 9.9 80 230-317 156-235 (383)
130 PLN02336 phosphoethanolamine N 98.5 6.8E-07 1.5E-11 89.0 11.0 81 233-316 258-338 (475)
131 PRK11188 rrmJ 23S rRNA methylt 98.5 3.3E-07 7.1E-12 81.4 7.8 69 239-321 49-125 (209)
132 PHA03411 putative methyltransf 98.5 8.1E-07 1.8E-11 81.3 10.2 80 237-326 60-139 (279)
133 PF10672 Methyltrans_SAM: S-ad 98.5 1.8E-07 3.9E-12 86.6 5.5 105 215-327 100-209 (286)
134 PRK01544 bifunctional N5-gluta 98.5 6.3E-07 1.4E-11 89.8 9.6 81 241-326 138-219 (506)
135 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 1.8E-06 3.9E-11 76.6 11.0 80 233-314 31-110 (223)
136 PF03848 TehB: Tellurite resis 98.4 1.5E-06 3.2E-11 75.8 9.9 85 225-315 15-99 (192)
137 KOG2904 Predicted methyltransf 98.4 1.2E-06 2.5E-11 79.1 9.4 83 241-324 148-233 (328)
138 PRK06922 hypothetical protein; 98.4 1.2E-06 2.6E-11 88.7 10.5 79 234-314 411-491 (677)
139 COG2520 Predicted methyltransf 98.4 5.8E-07 1.3E-11 84.8 7.8 81 239-324 186-267 (341)
140 PLN02585 magnesium protoporphy 98.4 1.1E-06 2.3E-11 82.8 9.4 71 241-317 144-219 (315)
141 PF01795 Methyltransf_5: MraW 98.4 2E-07 4.4E-12 86.7 4.2 92 233-326 12-106 (310)
142 COG0275 Predicted S-adenosylme 98.4 1.3E-06 2.7E-11 80.3 8.9 94 232-326 14-109 (314)
143 TIGR00406 prmA ribosomal prote 98.4 2E-06 4.3E-11 80.2 10.6 86 229-321 145-233 (288)
144 PRK10742 putative methyltransf 98.4 9.1E-07 2E-11 79.7 7.8 89 230-324 75-175 (250)
145 TIGR02072 BioC biotin biosynth 98.4 1.1E-06 2.4E-11 78.7 8.1 86 224-314 14-102 (240)
146 PLN02589 caffeoyl-CoA O-methyl 98.4 7.9E-07 1.7E-11 80.8 7.1 93 227-322 65-165 (247)
147 PRK07580 Mg-protoporphyrin IX 98.4 2.2E-06 4.7E-11 76.8 9.7 70 239-314 61-131 (230)
148 KOG3420 Predicted RNA methylas 98.4 4.9E-07 1.1E-11 74.1 4.8 79 239-323 46-124 (185)
149 PRK15068 tRNA mo(5)U34 methylt 98.4 2.9E-06 6.3E-11 80.3 10.8 80 233-315 114-194 (322)
150 COG2227 UbiG 2-polyprenyl-3-me 98.4 5.1E-07 1.1E-11 80.4 5.2 74 240-317 58-131 (243)
151 PF01269 Fibrillarin: Fibrilla 98.4 9.3E-06 2E-10 71.7 12.9 95 228-324 54-154 (229)
152 PF02390 Methyltransf_4: Putat 98.3 2.1E-06 4.5E-11 75.5 8.4 77 243-323 19-98 (195)
153 TIGR03438 probable methyltrans 98.3 3.3E-06 7.3E-11 79.2 9.6 65 240-304 62-127 (301)
154 COG0030 KsgA Dimethyladenosine 98.3 4.5E-06 9.8E-11 75.9 10.0 89 230-326 19-108 (259)
155 PLN02490 MPBQ/MSBQ methyltrans 98.3 2.5E-06 5.4E-11 81.0 8.6 71 240-314 112-182 (340)
156 COG2264 PrmA Ribosomal protein 98.3 2.5E-06 5.4E-11 79.0 8.4 88 228-318 147-237 (300)
157 PRK00517 prmA ribosomal protei 98.3 3.9E-06 8.5E-11 76.6 9.6 59 239-299 117-176 (250)
158 cd02440 AdoMet_MTases S-adenos 98.3 3.3E-06 7.1E-11 64.1 7.7 77 244-325 1-78 (107)
159 PF06325 PrmA: Ribosomal prote 98.3 3.5E-06 7.5E-11 78.5 8.7 84 228-316 146-231 (295)
160 TIGR00308 TRM1 tRNA(guanine-26 98.3 2.4E-06 5.2E-11 82.2 7.8 80 243-325 46-126 (374)
161 COG4106 Tam Trans-aconitate me 98.2 2.2E-06 4.7E-11 75.0 6.2 76 226-308 16-91 (257)
162 KOG2187 tRNA uracil-5-methyltr 98.2 1.8E-06 3.8E-11 84.2 6.2 92 232-326 374-468 (534)
163 TIGR03840 TMPT_Se_Te thiopurin 98.2 6.3E-06 1.4E-10 73.4 9.3 71 240-313 33-116 (213)
164 smart00828 PKS_MT Methyltransf 98.2 6.8E-06 1.5E-10 73.4 9.4 71 243-315 1-72 (224)
165 TIGR02716 C20_methyl_CrtF C-20 98.2 1.8E-05 3.8E-10 74.4 11.6 80 230-313 138-218 (306)
166 PLN02336 phosphoethanolamine N 98.2 9.3E-06 2E-10 80.9 10.0 87 228-322 24-112 (475)
167 PF08242 Methyltransf_12: Meth 98.2 5.4E-07 1.2E-11 69.8 0.8 71 246-317 1-73 (99)
168 PRK11727 23S rRNA mA1618 methy 98.2 1.3E-05 2.8E-10 75.5 10.0 83 241-327 114-203 (321)
169 PF02384 N6_Mtase: N-6 DNA Met 98.1 8.5E-06 1.8E-10 76.6 8.8 106 221-327 26-139 (311)
170 COG0220 Predicted S-adenosylme 98.1 6.8E-06 1.5E-10 73.7 7.6 77 243-323 50-129 (227)
171 COG0293 FtsJ 23S rRNA methylas 98.1 4.8E-06 1E-10 73.0 6.4 80 239-329 43-127 (205)
172 KOG1541 Predicted protein carb 98.1 8.1E-06 1.8E-10 71.6 7.7 88 222-317 29-119 (270)
173 PRK04457 spermidine synthase; 98.1 9.5E-06 2.1E-10 74.6 8.7 80 239-322 64-145 (262)
174 KOG1271 Methyltransferases [Ge 98.1 7.3E-06 1.6E-10 69.9 7.0 69 243-312 69-138 (227)
175 PF05401 NodS: Nodulation prot 98.1 6.1E-06 1.3E-10 71.6 6.6 85 223-313 25-109 (201)
176 PLN02672 methionine S-methyltr 98.1 1.1E-05 2.3E-10 86.6 9.8 82 242-327 119-217 (1082)
177 TIGR00452 methyltransferase, p 98.1 2E-05 4.3E-10 74.2 10.4 78 236-316 116-194 (314)
178 COG0116 Predicted N6-adenine-s 98.1 3E-05 6.5E-10 73.9 11.0 106 216-324 160-310 (381)
179 PRK05134 bifunctional 3-demeth 98.1 2.3E-05 5.1E-10 70.4 9.9 80 231-314 38-118 (233)
180 KOG1661 Protein-L-isoaspartate 98.1 5.4E-05 1.2E-09 66.1 11.1 119 196-320 37-169 (237)
181 smart00138 MeTrc Methyltransfe 98.1 1.6E-05 3.5E-10 73.2 8.4 77 240-316 98-209 (264)
182 TIGR01983 UbiG ubiquinone bios 98.0 2.4E-05 5.2E-10 69.8 9.2 72 240-314 44-116 (224)
183 PF07021 MetW: Methionine bios 98.0 1.4E-05 3E-10 69.3 6.9 67 239-314 11-79 (193)
184 PRK13255 thiopurine S-methyltr 98.0 4E-05 8.7E-10 68.5 10.0 83 228-313 22-119 (218)
185 COG4076 Predicted RNA methylas 98.0 5.6E-06 1.2E-10 70.8 4.2 62 242-306 33-94 (252)
186 PF02527 GidB: rRNA small subu 98.0 2.3E-05 4.9E-10 68.2 8.1 69 244-314 51-119 (184)
187 PF00398 RrnaAD: Ribosomal RNA 98.0 3.5E-05 7.6E-10 70.8 9.7 96 223-323 12-107 (262)
188 PRK00811 spermidine synthase; 98.0 2.5E-05 5.4E-10 72.6 8.0 78 240-321 75-158 (283)
189 COG0357 GidB Predicted S-adeno 98.0 3.9E-05 8.5E-10 68.0 8.7 79 242-324 68-146 (215)
190 KOG0820 Ribosomal RNA adenine 97.9 5.6E-05 1.2E-09 68.4 9.0 76 233-313 50-126 (315)
191 PRK11783 rlmL 23S rRNA m(2)G24 97.9 8.4E-05 1.8E-09 77.5 11.4 85 236-323 184-313 (702)
192 TIGR02081 metW methionine bios 97.9 5.1E-05 1.1E-09 66.4 8.3 66 240-314 12-79 (194)
193 KOG1270 Methyltransferases [Co 97.9 2.5E-05 5.4E-10 70.4 5.9 70 240-315 88-163 (282)
194 COG1889 NOP1 Fibrillarin-like 97.9 8.6E-05 1.9E-09 64.4 8.9 91 229-322 58-154 (231)
195 KOG3191 Predicted N6-DNA-methy 97.8 8.2E-05 1.8E-09 63.5 8.3 80 241-325 43-122 (209)
196 PF13489 Methyltransf_23: Meth 97.8 5.2E-05 1.1E-09 63.4 7.0 75 229-316 9-84 (161)
197 TIGR00478 tly hemolysin TlyA f 97.8 2.9E-05 6.3E-10 69.8 4.9 44 240-285 74-118 (228)
198 PRK11760 putative 23S rRNA C24 97.8 8.2E-05 1.8E-09 70.0 8.0 77 239-328 209-285 (357)
199 PF01728 FtsJ: FtsJ-like methy 97.8 5.9E-06 1.3E-10 71.5 0.0 76 240-326 22-106 (181)
200 TIGR01444 fkbM_fam methyltrans 97.7 0.00012 2.6E-09 60.4 7.6 59 244-303 1-59 (143)
201 PRK04148 hypothetical protein; 97.7 0.00026 5.6E-09 58.1 9.2 75 233-317 8-84 (134)
202 PRK01544 bifunctional N5-gluta 97.6 0.00015 3.2E-09 72.9 8.1 79 241-323 347-427 (506)
203 PF13679 Methyltransf_32: Meth 97.6 0.00018 3.9E-09 59.7 7.2 64 240-303 24-93 (141)
204 PLN02366 spermidine synthase 97.6 0.00023 5E-09 66.9 8.5 80 240-323 90-175 (308)
205 PRK13256 thiopurine S-methyltr 97.6 0.00028 6E-09 63.3 8.4 73 238-313 40-127 (226)
206 PRK01581 speE spermidine synth 97.6 0.00019 4.1E-09 68.4 7.6 80 240-323 149-236 (374)
207 PRK03612 spermidine synthase; 97.6 0.00016 3.5E-09 72.9 7.6 81 240-324 296-384 (521)
208 TIGR00417 speE spermidine synt 97.6 0.00029 6.3E-09 65.0 8.5 79 240-322 71-154 (270)
209 KOG1596 Fibrillarin and relate 97.6 0.00023 4.9E-09 63.4 7.1 95 229-325 138-238 (317)
210 COG0286 HsdM Type I restrictio 97.5 0.00036 7.7E-09 69.8 9.2 112 219-330 164-281 (489)
211 TIGR02987 met_A_Alw26 type II 97.5 0.0003 6.5E-09 71.1 8.4 86 242-327 32-126 (524)
212 PF05185 PRMT5: PRMT5 arginine 97.5 0.00036 7.9E-09 68.9 8.6 75 242-320 187-265 (448)
213 KOG1663 O-methyltransferase [S 97.4 0.00075 1.6E-08 59.9 8.8 95 224-321 56-157 (237)
214 KOG2671 Putative RNA methylase 97.4 0.00017 3.6E-09 67.4 4.8 91 229-324 196-295 (421)
215 COG2521 Predicted archaeal met 97.4 6.2E-05 1.4E-09 66.7 1.7 89 235-328 128-220 (287)
216 KOG1499 Protein arginine N-met 97.3 0.00076 1.6E-08 63.4 8.1 75 240-320 59-134 (346)
217 PF03291 Pox_MCEL: mRNA cappin 97.3 0.0013 2.8E-08 62.5 9.4 87 230-318 47-153 (331)
218 KOG4300 Predicted methyltransf 97.3 0.00089 1.9E-08 58.5 7.0 81 241-325 76-158 (252)
219 cd00315 Cyt_C5_DNA_methylase C 97.2 0.00065 1.4E-08 62.9 5.7 74 244-326 2-75 (275)
220 PF08123 DOT1: Histone methyla 97.2 0.00051 1.1E-08 60.8 4.7 91 234-325 35-134 (205)
221 KOG2782 Putative SAM dependent 97.2 0.00025 5.4E-09 62.2 2.5 91 233-327 35-132 (303)
222 COG3963 Phospholipid N-methylt 97.1 0.0015 3.2E-08 55.3 6.7 71 230-305 37-107 (194)
223 PF04445 SAM_MT: Putative SAM- 97.1 0.0011 2.3E-08 59.6 6.3 86 230-321 62-159 (234)
224 PF08003 Methyltransf_9: Prote 97.1 0.004 8.6E-08 57.8 10.1 78 234-314 108-186 (315)
225 PF01861 DUF43: Protein of unk 97.1 0.0014 3E-08 58.9 6.8 110 215-331 17-130 (243)
226 KOG4589 Cell division protein 97.1 0.00074 1.6E-08 58.0 4.6 77 240-328 68-151 (232)
227 PF05219 DREV: DREV methyltran 97.1 0.0015 3.2E-08 59.3 6.6 67 241-319 94-160 (265)
228 PF05724 TPMT: Thiopurine S-me 97.0 0.0021 4.4E-08 57.5 6.7 80 237-323 33-125 (218)
229 COG3897 Predicted methyltransf 96.9 0.0015 3.2E-08 56.7 5.2 77 231-313 65-145 (218)
230 KOG3010 Methyltransferase [Gen 96.9 0.0014 3E-08 58.6 4.5 80 232-314 23-104 (261)
231 TIGR03439 methyl_EasF probable 96.7 0.0045 9.8E-08 58.4 7.3 65 240-304 75-144 (319)
232 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0035 7.5E-08 60.6 6.6 83 242-327 50-135 (377)
233 PLN02823 spermine synthase 96.7 0.0069 1.5E-07 57.6 8.4 78 241-322 103-185 (336)
234 KOG2361 Predicted methyltransf 96.7 0.0015 3.2E-08 58.5 3.3 102 215-320 48-154 (264)
235 KOG1975 mRNA cap methyltransfe 96.7 0.0079 1.7E-07 56.0 8.1 87 229-319 107-205 (389)
236 PF04816 DUF633: Family of unk 96.6 0.008 1.7E-07 53.2 7.8 59 245-304 1-60 (205)
237 PF11599 AviRa: RRNA methyltra 96.6 0.0036 7.7E-08 55.1 4.9 60 228-287 35-98 (246)
238 KOG1099 SAM-dependent methyltr 96.5 0.0029 6.3E-08 56.1 4.1 79 242-331 42-133 (294)
239 KOG1500 Protein arginine N-met 96.3 0.017 3.7E-07 54.1 7.8 74 241-321 177-251 (517)
240 PF10294 Methyltransf_16: Puta 96.2 0.017 3.6E-07 49.7 7.0 60 240-301 44-106 (173)
241 PLN02232 ubiquinone biosynthes 96.2 0.0076 1.7E-07 51.1 4.8 48 270-317 1-51 (160)
242 PF05971 Methyltransf_10: Prot 96.1 0.065 1.4E-06 50.0 11.0 81 242-323 103-187 (299)
243 PF06080 DUF938: Protein of un 96.1 0.029 6.2E-07 49.4 8.2 65 241-306 25-90 (204)
244 KOG2899 Predicted methyltransf 96.1 0.0095 2.1E-07 53.4 5.1 47 241-288 58-104 (288)
245 PF12147 Methyltransf_20: Puta 96.0 0.033 7.1E-07 51.4 8.3 65 241-305 135-201 (311)
246 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.032 6.8E-07 53.1 8.4 80 242-325 53-133 (380)
247 COG4976 Predicted methyltransf 95.9 0.006 1.3E-07 54.3 3.0 45 238-285 122-166 (287)
248 KOG1098 Putative SAM-dependent 95.9 0.0075 1.6E-07 60.4 3.6 40 239-278 42-81 (780)
249 PF00891 Methyltransf_2: O-met 95.7 0.084 1.8E-06 47.6 9.6 64 232-303 91-154 (241)
250 PF01564 Spermine_synth: Sperm 95.6 0.029 6.3E-07 51.1 6.3 79 241-323 76-160 (246)
251 PF00145 DNA_methylase: C-5 cy 95.6 0.012 2.6E-07 55.1 3.9 72 244-326 2-74 (335)
252 COG0421 SpeE Spermidine syntha 95.6 0.033 7.1E-07 51.7 6.6 83 236-323 72-159 (282)
253 COG1189 Predicted rRNA methyla 95.6 0.023 4.9E-07 50.9 5.3 75 240-322 78-153 (245)
254 PF09243 Rsm22: Mitochondrial 95.4 0.079 1.7E-06 49.0 8.4 48 242-289 34-81 (274)
255 PHA01634 hypothetical protein 95.3 0.14 3.1E-06 41.5 8.3 49 241-291 28-76 (156)
256 PF13578 Methyltransf_24: Meth 95.0 0.0023 5E-08 50.0 -2.6 81 246-328 1-84 (106)
257 COG0500 SmtA SAM-dependent met 94.9 0.23 5E-06 39.3 9.1 69 245-314 52-123 (257)
258 KOG2078 tRNA modification enzy 94.8 0.031 6.8E-07 53.9 3.9 64 239-305 247-312 (495)
259 TIGR00675 dcm DNA-methyltransf 94.6 0.035 7.6E-07 52.4 3.9 72 245-326 1-72 (315)
260 PF03059 NAS: Nicotianamine sy 94.1 0.21 4.6E-06 46.1 7.8 71 243-313 122-195 (276)
261 KOG0024 Sorbitol dehydrogenase 94.0 0.2 4.3E-06 47.0 7.3 77 216-297 144-221 (354)
262 PRK11524 putative methyltransf 94.0 0.12 2.5E-06 48.1 6.0 46 240-288 207-252 (284)
263 COG1568 Predicted methyltransf 93.9 0.11 2.3E-06 47.6 5.2 86 241-331 152-239 (354)
264 PRK10458 DNA cytosine methylas 93.5 0.26 5.6E-06 49.1 7.6 80 242-325 88-181 (467)
265 PF05891 Methyltransf_PK: AdoM 93.5 0.14 3.1E-06 45.4 5.1 72 241-314 55-126 (218)
266 KOG3115 Methyltransferase-like 93.5 0.12 2.6E-06 45.3 4.5 64 242-306 61-131 (249)
267 COG2384 Predicted SAM-dependen 93.4 0.35 7.5E-06 43.0 7.4 73 240-313 15-88 (226)
268 KOG1269 SAM-dependent methyltr 93.3 0.17 3.6E-06 48.8 5.7 87 234-324 103-190 (364)
269 PF01555 N6_N4_Mtase: DNA meth 93.3 0.16 3.5E-06 44.6 5.4 43 239-284 189-231 (231)
270 KOG1253 tRNA methyltransferase 93.2 0.036 7.9E-07 54.4 1.0 86 240-328 108-198 (525)
271 PF06962 rRNA_methylase: Putat 93.0 0.38 8.2E-06 39.8 6.7 59 268-327 1-60 (140)
272 COG2933 Predicted SAM-dependen 92.7 0.28 6.2E-06 44.7 5.9 70 239-321 209-278 (358)
273 TIGR00497 hsdM type I restrict 92.5 0.68 1.5E-05 46.6 9.1 103 220-325 194-305 (501)
274 PF04989 CmcI: Cephalosporin h 92.4 0.18 3.8E-06 44.5 4.2 85 220-305 10-98 (206)
275 KOG1227 Putative methyltransfe 92.2 0.065 1.4E-06 49.6 1.3 71 241-313 194-265 (351)
276 COG0270 Dcm Site-specific DNA 92.1 0.26 5.7E-06 46.8 5.3 75 243-325 4-79 (328)
277 PRK13699 putative methylase; P 92.0 0.34 7.5E-06 43.5 5.8 49 239-290 161-209 (227)
278 PF07091 FmrO: Ribosomal RNA m 91.7 0.57 1.2E-05 42.5 6.7 64 241-306 105-168 (251)
279 COG4262 Predicted spermidine s 91.2 0.9 2E-05 43.4 7.7 81 240-324 288-376 (508)
280 KOG1501 Arginine N-methyltrans 90.7 0.25 5.5E-06 48.0 3.6 83 244-328 69-153 (636)
281 KOG2940 Predicted methyltransf 90.5 0.27 5.7E-06 44.0 3.3 69 242-314 73-141 (325)
282 PF03141 Methyltransf_29: Puta 90.2 0.2 4.3E-06 49.6 2.5 73 244-324 120-195 (506)
283 PF07279 DUF1442: Protein of u 89.8 1.8 3.9E-05 38.4 7.9 90 229-321 29-123 (218)
284 PF05148 Methyltransf_8: Hypot 89.7 0.59 1.3E-05 41.3 4.8 73 238-332 69-141 (219)
285 PRK10611 chemotaxis methyltran 87.8 0.81 1.8E-05 42.6 4.7 74 243-316 117-229 (287)
286 PLN03209 translocon at the inn 87.6 1.3 2.8E-05 45.2 6.3 83 238-321 76-167 (576)
287 KOG2651 rRNA adenine N-6-methy 87.0 2.2 4.7E-05 41.0 7.0 51 230-282 142-192 (476)
288 KOG0022 Alcohol dehydrogenase, 86.6 1.7 3.7E-05 40.8 5.9 55 234-292 185-239 (375)
289 PRK00536 speE spermidine synth 86.5 3.4 7.4E-05 38.0 7.9 73 240-321 71-147 (262)
290 COG1062 AdhC Zn-dependent alco 86.4 1.9 4.2E-05 40.9 6.3 56 233-292 177-232 (366)
291 COG1352 CheR Methylase of chem 86.2 3.1 6.6E-05 38.4 7.5 43 242-284 97-147 (268)
292 PF02254 TrkA_N: TrkA-N domain 84.5 0.76 1.7E-05 36.0 2.4 66 250-322 4-71 (116)
293 COG1064 AdhP Zn-dependent alco 84.3 3.5 7.5E-05 39.3 7.0 47 237-285 162-209 (339)
294 KOG3987 Uncharacterized conser 83.9 0.26 5.6E-06 43.4 -0.6 40 242-284 113-152 (288)
295 PF05050 Methyltransf_21: Meth 83.4 2.5 5.5E-05 34.9 5.3 39 247-285 1-42 (167)
296 COG1063 Tdh Threonine dehydrog 83.4 4.1 8.9E-05 38.9 7.3 48 237-285 164-212 (350)
297 PF01739 CheR: CheR methyltran 81.7 2.1 4.6E-05 37.5 4.2 75 242-319 32-142 (196)
298 cd08283 FDH_like_1 Glutathione 81.5 4.8 0.0001 38.8 7.1 50 235-285 178-228 (386)
299 PF05206 TRM13: Methyltransfer 81.0 4.4 9.5E-05 37.2 6.2 66 240-306 17-87 (259)
300 KOG3045 Predicted RNA methylas 80.0 2 4.3E-05 39.3 3.4 68 241-332 180-247 (325)
301 COG4798 Predicted methyltransf 79.1 3.8 8.2E-05 35.9 4.8 42 236-277 43-84 (238)
302 PF11899 DUF3419: Protein of u 78.8 7.2 0.00016 37.9 7.2 54 232-288 26-79 (380)
303 PF04672 Methyltransf_19: S-ad 77.4 5.1 0.00011 36.9 5.4 64 242-305 69-134 (267)
304 PRK07904 short chain dehydroge 77.2 8.6 0.00019 34.6 7.0 65 240-305 6-73 (253)
305 PF10354 DUF2431: Domain of un 76.2 7.2 0.00016 33.2 5.7 78 249-329 4-91 (166)
306 PRK08945 putative oxoacyl-(acy 76.0 12 0.00027 33.1 7.6 64 239-303 9-73 (247)
307 KOG1205 Predicted dehydrogenas 76.0 8.4 0.00018 35.8 6.5 87 241-328 11-106 (282)
308 PRK06940 short chain dehydroge 76.0 15 0.00032 33.5 8.2 77 244-323 4-86 (275)
309 PRK07102 short chain dehydroge 75.3 14 0.00031 32.6 7.8 61 244-305 3-64 (243)
310 KOG0821 Predicted ribosomal RN 75.2 6 0.00013 35.3 5.0 67 236-305 45-111 (326)
311 KOG0822 Protein kinase inhibit 75.0 6.5 0.00014 39.5 5.7 69 243-312 369-441 (649)
312 PRK06949 short chain dehydroge 74.0 16 0.00036 32.4 7.9 63 241-305 8-71 (258)
313 PRK05599 hypothetical protein; 73.4 13 0.00028 33.2 7.0 79 244-323 2-87 (246)
314 PRK07326 short chain dehydroge 72.6 16 0.00034 32.0 7.3 62 241-305 5-67 (237)
315 PRK12829 short chain dehydroge 72.3 16 0.00035 32.5 7.5 65 237-305 6-71 (264)
316 COG3510 CmcI Cephalosporin hyd 71.9 6.8 0.00015 34.3 4.5 79 222-305 49-131 (237)
317 COG3129 Predicted SAM-dependen 71.8 9.9 0.00022 34.3 5.6 84 240-324 77-164 (292)
318 KOG1709 Guanidinoacetate methy 71.7 13 0.00027 33.3 6.1 77 240-322 100-178 (271)
319 KOG1197 Predicted quinone oxid 71.4 13 0.00028 34.1 6.3 54 231-285 136-190 (336)
320 PRK07454 short chain dehydroge 70.4 26 0.00056 30.8 8.3 62 242-305 6-68 (241)
321 PRK06194 hypothetical protein; 70.2 20 0.00042 32.6 7.6 83 242-326 6-96 (287)
322 TIGR01963 PHB_DH 3-hydroxybuty 69.7 12 0.00027 33.0 6.0 78 244-323 3-88 (255)
323 COG2961 ComJ Protein involved 69.5 16 0.00035 33.3 6.4 74 241-324 89-167 (279)
324 PRK05786 fabG 3-ketoacyl-(acyl 69.4 23 0.00051 30.9 7.7 62 241-305 4-66 (238)
325 PRK13394 3-hydroxybutyrate deh 69.4 7.6 0.00016 34.6 4.6 63 241-305 6-69 (262)
326 PRK07576 short chain dehydroge 69.2 24 0.00053 31.7 8.0 63 241-305 8-71 (264)
327 cd08237 ribitol-5-phosphate_DH 69.0 11 0.00024 35.6 5.8 47 238-284 160-207 (341)
328 PRK08213 gluconate 5-dehydroge 68.7 25 0.00054 31.4 7.9 63 241-305 11-74 (259)
329 PLN00198 anthocyanidin reducta 68.6 6.7 0.00015 36.8 4.2 81 237-319 4-86 (338)
330 PRK06914 short chain dehydroge 68.4 28 0.00061 31.4 8.2 85 242-327 3-95 (280)
331 PLN02989 cinnamyl-alcohol dehy 68.4 7.3 0.00016 36.3 4.4 79 242-321 5-85 (325)
332 PRK07024 short chain dehydroge 68.1 16 0.00035 32.6 6.5 60 243-305 3-63 (257)
333 PRK07831 short chain dehydroge 67.5 29 0.00064 31.0 8.1 65 241-305 16-82 (262)
334 PRK12429 3-hydroxybutyrate deh 67.3 26 0.00057 30.9 7.7 62 242-305 4-66 (258)
335 PRK09424 pntA NAD(P) transhydr 67.2 13 0.00028 37.5 6.1 48 239-292 162-210 (509)
336 PLN02540 methylenetetrahydrofo 66.9 14 0.00031 37.7 6.3 62 242-303 28-99 (565)
337 COG4221 Short-chain alcohol de 66.9 12 0.00027 33.9 5.2 80 243-326 7-94 (246)
338 TIGR03589 PseB UDP-N-acetylglu 66.1 5.9 0.00013 37.2 3.3 75 242-320 4-81 (324)
339 cd08230 glucose_DH Glucose deh 65.4 16 0.00034 34.6 6.1 48 239-292 170-221 (355)
340 PRK07814 short chain dehydroge 65.0 33 0.00072 30.7 8.0 63 241-305 9-72 (263)
341 TIGR03201 dearomat_had 6-hydro 64.3 25 0.00054 33.2 7.3 50 237-292 162-212 (349)
342 COG0300 DltE Short-chain dehyd 63.6 37 0.0008 31.3 7.8 66 240-306 4-70 (265)
343 PRK10669 putative cation:proto 63.3 7.8 0.00017 39.5 3.8 68 243-319 418-487 (558)
344 COG4301 Uncharacterized conser 62.4 45 0.00098 30.5 7.8 64 239-303 76-144 (321)
345 PLN02662 cinnamyl-alcohol dehy 62.4 11 0.00023 35.0 4.2 81 242-323 4-86 (322)
346 TIGR03206 benzo_BadH 2-hydroxy 62.3 41 0.00089 29.6 7.9 81 242-324 3-91 (250)
347 PRK06172 short chain dehydroge 62.2 47 0.001 29.3 8.4 63 241-305 6-69 (253)
348 PRK12939 short chain dehydroge 62.0 38 0.00082 29.7 7.7 63 241-305 6-69 (250)
349 PRK08251 short chain dehydroge 61.1 44 0.00096 29.4 8.0 82 242-324 2-92 (248)
350 PRK07677 short chain dehydroge 60.7 50 0.0011 29.3 8.2 79 243-323 2-88 (252)
351 PTZ00357 methyltransferase; Pr 60.3 45 0.00096 35.1 8.3 64 244-307 703-778 (1072)
352 PRK09880 L-idonate 5-dehydroge 60.0 48 0.001 31.1 8.3 48 238-292 166-216 (343)
353 PRK08063 enoyl-(acyl carrier p 59.6 30 0.00066 30.5 6.6 81 241-323 3-92 (250)
354 PRK05866 short chain dehydroge 59.0 22 0.00049 32.7 5.8 79 242-322 40-126 (293)
355 PRK07666 fabG 3-ketoacyl-(acyl 58.6 29 0.00064 30.4 6.3 80 242-323 7-94 (239)
356 PRK09291 short chain dehydroge 58.5 26 0.00055 31.1 5.9 78 243-322 3-82 (257)
357 PF05711 TylF: Macrocin-O-meth 58.4 23 0.0005 32.2 5.5 80 241-321 74-185 (248)
358 KOG4058 Uncharacterized conser 58.3 26 0.00056 29.5 5.2 66 240-307 71-137 (199)
359 PF07942 N2227: N2227-like pro 58.2 30 0.00065 32.0 6.3 41 241-284 56-96 (270)
360 PRK08339 short chain dehydroge 57.4 67 0.0015 28.9 8.5 82 241-323 7-95 (263)
361 PF04378 RsmJ: Ribosomal RNA s 57.1 16 0.00034 33.3 4.1 69 249-324 63-136 (245)
362 PF00107 ADH_zinc_N: Zinc-bind 56.9 14 0.0003 29.2 3.5 35 252-292 2-36 (130)
363 PRK03562 glutathione-regulated 56.7 10 0.00022 39.4 3.3 68 243-319 401-470 (621)
364 KOG1331 Predicted methyltransf 56.7 7.6 0.00017 36.0 2.1 63 240-313 44-106 (293)
365 PRK05867 short chain dehydroge 56.5 63 0.0014 28.6 8.1 81 241-323 8-96 (253)
366 PRK06138 short chain dehydroge 56.5 20 0.00044 31.6 4.9 61 242-305 5-66 (252)
367 PRK07453 protochlorophyllide o 56.2 18 0.00039 33.7 4.7 81 241-323 5-93 (322)
368 PRK12384 sorbitol-6-phosphate 56.1 57 0.0012 29.0 7.8 81 242-323 2-91 (259)
369 PRK03659 glutathione-regulated 55.7 12 0.00026 38.6 3.6 67 244-319 402-470 (601)
370 PRK08217 fabG 3-ketoacyl-(acyl 55.5 72 0.0016 27.9 8.3 62 241-304 4-66 (253)
371 PLN02986 cinnamyl-alcohol dehy 55.3 18 0.0004 33.5 4.6 81 241-322 4-86 (322)
372 PRK06124 gluconate 5-dehydroge 55.3 74 0.0016 28.1 8.4 63 241-305 10-73 (256)
373 PLN02214 cinnamoyl-CoA reducta 55.2 24 0.00052 33.4 5.4 78 241-320 9-88 (342)
374 PRK07478 short chain dehydroge 55.2 30 0.00064 30.8 5.8 81 242-324 6-94 (254)
375 COG0863 DNA modification methy 55.0 31 0.00067 31.6 6.0 50 239-291 220-269 (302)
376 PLN02896 cinnamyl-alcohol dehy 54.9 21 0.00045 33.8 4.9 62 241-305 9-71 (353)
377 KOG2352 Predicted spermine/spe 54.8 50 0.0011 33.0 7.4 71 240-313 46-117 (482)
378 cd05188 MDR Medium chain reduc 54.6 48 0.001 29.2 7.0 43 240-284 133-176 (271)
379 PRK05653 fabG 3-ketoacyl-(acyl 54.0 64 0.0014 28.0 7.7 62 242-305 5-67 (246)
380 PF02636 Methyltransf_28: Puta 54.0 16 0.00035 33.1 3.8 47 242-288 19-72 (252)
381 TIGR00676 fadh2 5,10-methylene 53.9 58 0.0013 29.9 7.5 62 242-303 28-99 (272)
382 PF01488 Shikimate_DH: Shikima 53.6 23 0.00049 28.8 4.3 48 239-286 9-56 (135)
383 PRK07533 enoyl-(acyl carrier p 53.5 52 0.0011 29.5 7.1 81 241-323 9-98 (258)
384 COG0169 AroE Shikimate 5-dehyd 52.6 92 0.002 29.0 8.6 51 241-291 125-175 (283)
385 cd08254 hydroxyacyl_CoA_DH 6-h 52.1 49 0.0011 30.5 6.9 50 237-292 161-211 (338)
386 PLN02780 ketoreductase/ oxidor 52.0 56 0.0012 30.6 7.3 62 241-303 52-115 (320)
387 PRK08643 acetoin reductase; Va 51.8 61 0.0013 28.7 7.3 61 243-305 3-64 (256)
388 PRK12548 shikimate 5-dehydroge 51.4 51 0.0011 30.6 6.8 59 241-302 125-188 (289)
389 PRK05565 fabG 3-ketoacyl-(acyl 51.0 27 0.00058 30.6 4.7 62 242-305 5-68 (247)
390 PRK06182 short chain dehydroge 50.9 21 0.00046 32.2 4.1 74 242-323 3-84 (273)
391 PLN02650 dihydroflavonol-4-red 50.9 20 0.00044 33.8 4.1 62 243-305 6-69 (351)
392 PRK07109 short chain dehydroge 50.8 97 0.0021 29.2 8.8 81 241-323 7-95 (334)
393 cd08255 2-desacetyl-2-hydroxye 50.8 60 0.0013 29.1 7.1 48 236-284 92-140 (277)
394 COG5459 Predicted rRNA methyla 50.5 12 0.00027 35.8 2.4 44 243-287 115-158 (484)
395 PRK09496 trkA potassium transp 50.0 23 0.00051 34.7 4.5 57 242-305 231-288 (453)
396 PRK08703 short chain dehydroge 49.8 83 0.0018 27.5 7.7 62 241-303 5-67 (239)
397 PF03492 Methyltransf_7: SAM d 49.2 65 0.0014 30.6 7.2 82 242-331 17-120 (334)
398 PLN02427 UDP-apiose/xylose syn 49.1 18 0.00039 34.7 3.5 63 242-305 14-78 (386)
399 TIGR02822 adh_fam_2 zinc-bindi 48.7 65 0.0014 30.2 7.2 52 236-293 160-212 (329)
400 PRK06139 short chain dehydroge 48.3 95 0.0021 29.3 8.2 63 241-305 6-69 (330)
401 PRK01747 mnmC bifunctional tRN 47.7 29 0.00062 36.2 5.0 35 242-276 58-103 (662)
402 TIGR03366 HpnZ_proposed putati 47.7 72 0.0016 29.0 7.2 49 237-292 116-167 (280)
403 PRK06125 short chain dehydroge 47.6 1.2E+02 0.0026 26.9 8.5 64 241-305 6-70 (259)
404 PRK07097 gluconate 5-dehydroge 47.2 1.1E+02 0.0024 27.2 8.3 82 241-324 9-98 (265)
405 PRK06196 oxidoreductase; Provi 46.9 67 0.0015 29.8 6.9 78 241-324 25-110 (315)
406 KOG2920 Predicted methyltransf 46.8 20 0.00043 33.3 3.1 38 241-280 116-153 (282)
407 PRK07063 short chain dehydroge 46.2 1.2E+02 0.0026 26.9 8.3 64 241-305 6-71 (260)
408 PRK05717 oxidoreductase; Valid 45.9 82 0.0018 27.9 7.1 78 242-324 10-95 (255)
409 PRK07890 short chain dehydroge 45.5 1.4E+02 0.003 26.3 8.6 81 241-323 4-92 (258)
410 PRK06197 short chain dehydroge 45.3 1.1E+02 0.0023 28.1 8.0 82 241-323 15-105 (306)
411 PRK08594 enoyl-(acyl carrier p 45.0 76 0.0017 28.4 6.8 82 241-322 6-96 (257)
412 PRK07774 short chain dehydroge 44.8 1.2E+02 0.0025 26.6 7.9 81 241-323 5-93 (250)
413 PRK08278 short chain dehydroge 44.6 35 0.00076 30.9 4.5 82 241-324 5-101 (273)
414 cd08238 sorbose_phosphate_red 44.3 51 0.0011 32.0 5.9 49 237-285 171-222 (410)
415 PRK05876 short chain dehydroge 44.2 1.3E+02 0.0028 27.2 8.3 81 241-323 5-93 (275)
416 PRK07062 short chain dehydroge 44.1 1.4E+02 0.0029 26.6 8.3 82 241-323 7-97 (265)
417 COG1748 LYS9 Saccharopine dehy 44.0 45 0.00097 32.5 5.3 57 243-305 2-60 (389)
418 PLN03154 putative allyl alcoho 43.8 77 0.0017 29.9 6.9 51 237-292 154-206 (348)
419 PF00106 adh_short: short chai 43.8 1.2E+02 0.0026 24.6 7.4 77 250-327 7-94 (167)
420 PRK08277 D-mannonate oxidoredu 43.7 1.4E+02 0.003 26.8 8.3 79 242-322 10-96 (278)
421 PRK12826 3-ketoacyl-(acyl-carr 43.6 1.4E+02 0.0031 26.0 8.3 62 242-305 6-68 (251)
422 PRK07424 bifunctional sterol d 43.6 43 0.00094 32.8 5.2 98 216-322 156-254 (406)
423 TIGR01500 sepiapter_red sepiap 43.5 1.1E+02 0.0024 27.2 7.6 61 244-305 2-68 (256)
424 PRK06181 short chain dehydroge 43.4 1.4E+02 0.003 26.5 8.2 61 243-305 2-63 (263)
425 PRK08340 glucose-1-dehydrogena 43.3 1.1E+02 0.0024 27.2 7.5 77 244-323 2-86 (259)
426 PRK12749 quinate/shikimate deh 42.8 1.7E+02 0.0037 27.1 8.9 46 241-286 123-171 (288)
427 PRK07523 gluconate 5-dehydroge 42.8 1.4E+02 0.0031 26.3 8.2 81 241-323 9-97 (255)
428 PRK06113 7-alpha-hydroxysteroi 42.7 1.5E+02 0.0032 26.2 8.3 63 241-305 10-73 (255)
429 PRK08862 short chain dehydroge 42.6 1.3E+02 0.0029 26.3 7.9 79 241-321 4-91 (227)
430 TIGR00677 fadh2_euk methylenet 42.2 1E+02 0.0022 28.6 7.2 62 242-303 29-100 (281)
431 PRK07340 ornithine cyclodeamin 42.1 1.3E+02 0.0029 28.0 8.1 63 229-291 112-175 (304)
432 COG0569 TrkA K+ transport syst 41.8 44 0.00095 29.8 4.6 50 251-305 7-57 (225)
433 PRK05993 short chain dehydroge 41.8 80 0.0017 28.5 6.5 56 242-305 4-60 (277)
434 PRK06114 short chain dehydroge 41.7 1.2E+02 0.0026 26.9 7.5 80 241-322 7-95 (254)
435 KOG4174 Uncharacterized conser 41.6 1.4E+02 0.0029 27.5 7.5 87 241-329 56-153 (282)
436 PF01234 NNMT_PNMT_TEMT: NNMT/ 41.6 19 0.00042 32.9 2.3 82 240-323 55-172 (256)
437 PRK05855 short chain dehydroge 41.1 58 0.0013 32.7 5.9 83 242-326 315-405 (582)
438 COG1565 Uncharacterized conser 41.0 67 0.0014 31.0 5.8 49 242-290 78-133 (370)
439 PRK06141 ornithine cyclodeamin 40.7 1.4E+02 0.0031 27.9 8.1 63 229-291 112-175 (314)
440 PF03721 UDPG_MGDP_dh_N: UDP-g 40.4 22 0.00047 30.8 2.3 34 251-284 7-41 (185)
441 PRK07067 sorbitol dehydrogenas 40.2 1.2E+02 0.0026 26.8 7.3 59 242-305 6-65 (257)
442 cd05564 PTS_IIB_chitobiose_lic 40.2 44 0.00094 25.5 3.7 16 248-263 4-19 (96)
443 PRK06123 short chain dehydroge 40.1 1.4E+02 0.0031 26.0 7.7 61 243-305 3-65 (248)
444 KOG3673 FtsJ-like RNA methyltr 40.1 8.6 0.00019 38.7 -0.3 18 245-262 271-288 (845)
445 PRK07074 short chain dehydroge 40.0 1.2E+02 0.0026 26.8 7.2 59 243-305 3-62 (257)
446 PRK08267 short chain dehydroge 39.6 94 0.002 27.6 6.5 58 244-305 3-61 (260)
447 PF02086 MethyltransfD12: D12 39.5 66 0.0014 28.7 5.5 40 241-283 20-59 (260)
448 KOG1201 Hydroxysteroid 17-beta 39.5 1.2E+02 0.0025 28.5 7.0 62 241-305 37-99 (300)
449 PRK09496 trkA potassium transp 39.4 32 0.0007 33.7 3.7 53 244-304 2-55 (453)
450 PRK07832 short chain dehydroge 39.4 89 0.0019 28.1 6.4 57 249-305 6-63 (272)
451 PF10237 N6-adenineMlase: Prob 39.0 1.1E+02 0.0023 26.0 6.3 88 225-324 7-97 (162)
452 KOG3178 Hydroxyindole-O-methyl 38.8 1.2E+02 0.0026 29.0 7.1 54 243-303 179-232 (342)
453 PRK07775 short chain dehydroge 38.8 1.5E+02 0.0033 26.6 7.8 61 243-305 11-72 (274)
454 PRK09242 tropinone reductase; 38.5 1.9E+02 0.0041 25.5 8.3 63 241-305 8-73 (257)
455 PRK12859 3-ketoacyl-(acyl-carr 38.5 1.7E+02 0.0036 26.0 8.0 85 240-325 4-108 (256)
456 PRK07035 short chain dehydroge 37.8 2E+02 0.0043 25.2 8.3 62 242-305 8-70 (252)
457 TIGR01289 LPOR light-dependent 37.7 1.3E+02 0.0028 27.9 7.3 79 242-322 3-90 (314)
458 TIGR01832 kduD 2-deoxy-D-gluco 37.4 1.5E+02 0.0032 25.9 7.4 80 241-324 4-91 (248)
459 PRK05875 short chain dehydroge 37.1 2E+02 0.0043 25.7 8.3 64 241-305 6-71 (276)
460 PLN02740 Alcohol dehydrogenase 37.0 1E+02 0.0022 29.5 6.6 50 236-292 193-245 (381)
461 cd08281 liver_ADH_like1 Zinc-d 36.7 1.1E+02 0.0025 28.9 6.9 52 236-292 186-238 (371)
462 PRK12748 3-ketoacyl-(acyl-carr 36.5 1.5E+02 0.0032 26.2 7.3 81 241-323 4-105 (256)
463 CHL00194 ycf39 Ycf39; Provisio 36.5 34 0.00073 31.8 3.2 68 244-319 2-70 (317)
464 PRK06720 hypothetical protein; 36.5 2.6E+02 0.0056 23.5 8.4 81 241-323 15-103 (169)
465 PRK08415 enoyl-(acyl carrier p 36.4 1.6E+02 0.0035 26.7 7.6 81 241-323 4-93 (274)
466 TIGR00853 pts-lac PTS system, 36.4 59 0.0013 24.8 3.9 19 244-263 5-23 (95)
467 PLN00141 Tic62-NAD(P)-related 36.1 53 0.0012 29.2 4.3 76 242-323 17-95 (251)
468 PRK05650 short chain dehydroge 36.0 2.1E+02 0.0045 25.5 8.2 60 244-305 2-62 (270)
469 PF04189 Gcd10p: Gcd10p family 36.0 93 0.002 29.2 5.9 46 227-273 188-233 (299)
470 PRK08589 short chain dehydroge 35.7 2E+02 0.0042 25.9 8.0 81 241-324 5-93 (272)
471 PRK09186 flagellin modificatio 35.6 2E+02 0.0044 25.1 8.0 80 241-321 3-91 (256)
472 PRK15181 Vi polysaccharide bio 35.4 38 0.00082 32.0 3.3 64 241-305 14-82 (348)
473 PRK09135 pteridine reductase; 35.4 2.3E+02 0.005 24.5 8.3 64 241-305 5-70 (249)
474 PRK09134 short chain dehydroge 35.4 2E+02 0.0044 25.3 8.0 80 241-322 8-96 (258)
475 COG1086 Predicted nucleoside-d 35.3 76 0.0016 32.5 5.4 64 242-306 250-316 (588)
476 cd00401 AdoHcyase S-adenosyl-L 35.3 81 0.0017 31.1 5.6 44 240-284 200-243 (413)
477 PRK06101 short chain dehydroge 35.0 1.3E+02 0.0028 26.4 6.6 56 244-305 3-59 (240)
478 cd08295 double_bond_reductase_ 35.0 1.2E+02 0.0026 28.2 6.7 53 236-293 146-200 (338)
479 PF11968 DUF3321: Putative met 34.9 39 0.00085 30.1 3.0 58 243-319 53-113 (219)
480 KOG2912 Predicted DNA methylas 34.9 47 0.001 31.5 3.6 53 246-299 107-160 (419)
481 PRK12746 short chain dehydroge 34.6 76 0.0016 28.0 5.0 62 242-305 6-69 (254)
482 PRK12935 acetoacetyl-CoA reduc 34.5 60 0.0013 28.5 4.3 81 242-324 6-95 (247)
483 PRK07231 fabG 3-ketoacyl-(acyl 34.4 2.2E+02 0.0047 24.8 8.0 80 242-324 5-92 (251)
484 TIGR02818 adh_III_F_hyde S-(hy 34.2 1.5E+02 0.0032 28.2 7.2 52 236-292 180-232 (368)
485 cd08239 THR_DH_like L-threonin 34.1 1.6E+02 0.0034 27.4 7.3 51 235-292 157-210 (339)
486 PRK07791 short chain dehydroge 34.0 2.2E+02 0.0048 25.9 8.1 81 241-323 5-102 (286)
487 COG5379 BtaA S-adenosylmethion 34.0 92 0.002 29.3 5.3 52 234-288 56-107 (414)
488 PRK08324 short chain dehydroge 33.6 71 0.0015 33.5 5.2 62 241-305 421-483 (681)
489 COG0062 Uncharacterized conser 33.3 2.2E+02 0.0048 25.1 7.5 49 243-292 50-105 (203)
490 PRK07806 short chain dehydroge 33.2 2.6E+02 0.0055 24.4 8.2 78 242-321 6-92 (248)
491 PRK08114 cystathionine beta-ly 33.1 98 0.0021 30.2 5.8 87 238-328 73-162 (395)
492 TIGR01746 Thioester-redct thio 33.0 1.1E+02 0.0025 28.3 6.2 57 248-304 4-73 (367)
493 TIGR03451 mycoS_dep_FDH mycoth 32.9 1.4E+02 0.0031 28.1 6.9 52 236-292 171-223 (358)
494 PRK06603 enoyl-(acyl carrier p 32.9 1.9E+02 0.0041 25.8 7.4 80 241-322 7-95 (260)
495 cd08294 leukotriene_B4_DH_like 32.8 1.4E+02 0.0031 27.3 6.8 52 235-292 137-190 (329)
496 KOG0056 Heavy metal exporter H 32.4 89 0.0019 31.7 5.3 77 179-263 507-585 (790)
497 cd08242 MDR_like Medium chain 32.3 3.1E+02 0.0067 25.0 8.9 52 235-292 149-201 (319)
498 PRK10538 malonic semialdehyde 32.2 1E+02 0.0022 27.2 5.4 53 249-305 6-59 (248)
499 PF03514 GRAS: GRAS domain fam 32.1 1.7E+02 0.0037 28.2 7.3 63 230-292 99-175 (374)
500 TIGR02825 B4_12hDH leukotriene 32.0 1.6E+02 0.0035 27.1 7.0 53 235-293 132-186 (325)
No 1
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.5e-50 Score=391.36 Aligned_cols=289 Identities=22% Similarity=0.295 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccc--ccchHHHHH
Q 019802 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK--WKRQEELVY 109 (335)
Q Consensus 33 ~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~--~~~~~~lLr 109 (335)
++|.+|+++|.+|+.++.+.+ .+.. .+. .++.+|++|+++|||||+|++..||++|++ +++++ ....+.+||
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~--~~~-~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~l~~~~r~iLr 78 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDS--VLS-FLDDKDRRFFKELVWGVVRKEELLDWYINQ--LLKKKDIPPAVRVALR 78 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHH--HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHH
Confidence 479999999999998776654 3332 222 467789999999999999999999999998 45543 224589999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhhhh----H-------------------HHHHHHHHHHccCCC--HHHHHHhhcCC
Q 019802 110 ILTYDILFGQEISLVGDAEKFLMLHKGA----I-------------------QLALAQLLVRNKVKS--IEDLMALYQTP 164 (335)
Q Consensus 110 l~lyqllf~~~iP~~a~v~~~v~~~k~~----~-------------------~~~l~~~~~~~~~~~--~~~~~~~~~~~ 164 (335)
+|+|||+|++.+|+++++++.|+..|.. + .++++.|+.+++... .++..++++++
T Consensus 79 ~~~yel~~~~~~p~~aavneaV~lak~~~~~~fVNaVLr~~~r~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~ 158 (431)
T PRK14903 79 MGAYQLLFMNSVPDYAAVSETVKLVKNENFKKLVNAVLRRLRTVPEPKELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWN 158 (431)
T ss_pred HHHHHHHhccCCCcceeHHHHHHHHhccchHHHHHHHHHHHHHhhcchhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999998679999888887665421 1 123455555444321 13333455677
Q ss_pred CCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCC-CCCCCCCcccccceEEecCchHHHHHHHcCCCCC
Q 019802 165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG 242 (335)
Q Consensus 165 ~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g 242 (335)
+.+||+++|||++|++++++.+.|++ |+.+++++++|+++.+.. ..++..++.|.+|++++||.+||+++.++++++|
T Consensus 159 ~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g 238 (431)
T PRK14903 159 QEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPG 238 (431)
T ss_pred cCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCC
Confidence 88999999999999999999999976 888888899999998875 4568889999999999999999999999999999
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCceEEEEEEec
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYSEVSLIFCIF 321 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~-~~~~~fd~V~~IllD~ 321 (335)
++|||+|||||+||+|+++++++.++|+|+|++++|++.+++|++++|+.+++++++|+..++ .....||. |++|+
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~---Vl~Da 315 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR---ILVDA 315 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE---EEECC
Confidence 999999999999999999999888999999999999999999999999999999999998876 23456775 99999
Q ss_pred cccccccc
Q 019802 322 TWMIIMFH 329 (335)
Q Consensus 322 ~cs~~g~~ 329 (335)
||||+|+.
T Consensus 316 PCsg~G~~ 323 (431)
T PRK14903 316 PCTSLGTA 323 (431)
T ss_pred CCCCCccc
Confidence 99999984
No 2
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=6.8e-49 Score=384.42 Aligned_cols=290 Identities=22% Similarity=0.281 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccc----cchHHH
Q 019802 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEEL 107 (335)
Q Consensus 33 ~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~----~~~~~l 107 (335)
++|+.|+++|.+++.+ .+.+ ++..... ...++.+||+|+++|||||+|++..||++|++ +++.+. ...+.+
T Consensus 2 ~~R~~A~~~L~~i~~~-~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~~l~~~~r~i 77 (434)
T PRK14901 2 NARQLAWEILQAVARG-AYADVALERVLR-KYPLSGADRALVTELVYGCIRRRRTLDAWIDQ--LGKKPAHKQPPDLRWL 77 (434)
T ss_pred CHHHHHHHHHHHHHcC-CchHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHhHHHHHHHHHH--hcCCChhhcCHHHHHH
Confidence 4799999999999884 4443 3332111 13456689999999999999999999999998 444332 235789
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhhh-------H------------------------------HHHHHHHHHHcc
Q 019802 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA-------I------------------------------QLALAQLLVRNK 150 (335)
Q Consensus 108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~~-------~------------------------------~~~l~~~~~~~~ 150 (335)
||+|+|||+|++++|+++++++.|+..|.. + .++++.|+.+++
T Consensus 78 Lrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~ 157 (434)
T PRK14901 78 LHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLW 157 (434)
T ss_pred HHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHH
Confidence 999999999999899999888877554310 0 123455655544
Q ss_pred CCC--HHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCC-CCCCCCcccccceEEec
Q 019802 151 VKS--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQ 226 (335)
Q Consensus 151 ~~~--~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~g~~~iQ 226 (335)
... .+++.+++++++.+||+++|||++|++++++.+.|++ |+.+++.+++|+++.+... ..+..+++|.+|++++|
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~q 237 (434)
T PRK14901 158 LEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQ 237 (434)
T ss_pred HHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEE
Confidence 322 1233345567788999999999999999999999977 8888888999999999753 35888999999999999
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD- 305 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~- 305 (335)
|.+|++++..+++++|++|||+|||||+||+++++++++.|+|+|+|++++|++.+++|++++|+.||+++++|+.+++
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 9999999999999999999999999999999999999888999999999999999999999999999999999998876
Q ss_pred ---CCCCCCceEEEEEEeccccccccc
Q 019802 306 ---PKDPAYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 306 ---~~~~~fd~V~~IllD~~cs~~g~~ 329 (335)
...++||. |++|+||||+|+.
T Consensus 318 ~~~~~~~~fD~---Vl~DaPCSg~G~~ 341 (434)
T PRK14901 318 LKPQWRGYFDR---ILLDAPCSGLGTL 341 (434)
T ss_pred ccccccccCCE---EEEeCCCCccccc
Confidence 22346764 9999999999983
No 3
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.3e-46 Score=365.85 Aligned_cols=287 Identities=22% Similarity=0.306 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----chHH
Q 019802 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (335)
Q Consensus 32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~~~~ 106 (335)
|++|+.|+++|.+++.++.+.+ .+... + ..++.+|++|+++|||||+||+..||++|.+ +++.+.. ..+.
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~--~-~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~r~ 76 (427)
T PRK10901 2 MNLRALAAAAILQVVDQGQSLSAALPAL--Q-QKVSDKDRALLQELCYGVLRRLPRLEWLIAQ--LLAKPLKGKQRIVHA 76 (427)
T ss_pred chHHHHHHHHHHHHHHcCCcHHHHHHHH--H-hhCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence 5789999999999988776554 33321 1 1345689999999999999999999999998 4554322 2478
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhhh-------hH-------------------------HHHHHHHHHHccCCC-
Q 019802 107 LVYILTYDILFGQEISLVGDAEKFLMLHKG-------AI-------------------------QLALAQLLVRNKVKS- 153 (335)
Q Consensus 107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~-------~~-------------------------~~~l~~~~~~~~~~~- 153 (335)
+||||+|||+|++ +|+++++++.|+..|. .+ .++++.|+.+++...
T Consensus 77 iLrla~yell~~~-iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~~~~~ 155 (427)
T PRK10901 77 LLLVGLYQLLYTR-IPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAY 155 (427)
T ss_pred HHHHHHHHHhccC-CCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHHHHHh
Confidence 9999999999998 9999998888765431 01 123455665554332
Q ss_pred HHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHH
Q 019802 154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM 232 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l 232 (335)
.+++.+++++.+.++|+|+|||++|++++++.+.|++ |+..++++++|+++.+..+..+..+++|++|++++||.+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~ 235 (427)
T PRK10901 156 PEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQL 235 (427)
T ss_pred HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHH
Confidence 2334456667788999999999999999999999976 788888889999999987667889999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPA 310 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~~ 310 (335)
++..+++++|++|||+|||||++|.++++++++ ++|+++|+++.|++.+++|++++|+. +.++++|+.+++. ...+
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCC
Confidence 999999999999999999999999999999754 89999999999999999999999985 7899999987643 2345
Q ss_pred CceEEEEEEeccccccccc
Q 019802 311 YSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 311 fd~V~~IllD~~cs~~g~~ 329 (335)
||. |++|+|||++|+.
T Consensus 314 fD~---Vl~D~Pcs~~G~~ 329 (427)
T PRK10901 314 FDR---ILLDAPCSATGVI 329 (427)
T ss_pred CCE---EEECCCCCccccc
Confidence 775 9999999999973
No 4
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1.7e-45 Score=359.73 Aligned_cols=284 Identities=21% Similarity=0.275 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHccchhhhhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccccc---hHHHHHHH
Q 019802 35 RREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKR---QEELVYIL 111 (335)
Q Consensus 35 R~~A~~iL~~v~~~~~~~~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~~---~~~lLrl~ 111 (335)
|+.|+++|+++..++.+++..... ...++.+|++|+++|||||+||+..||++|++ +++.+++. ...+|+++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~---~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~~~L~~~ 75 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL---QQKVSDQDRALLQELCFGVLRTLSQLDWLIKK--LMDRPMKGKPRTVHYLILV 75 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHHHHHH
Confidence 788999999998887776643321 23456689999999999999999999999998 45544322 12367777
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhhh-------hHHH------------------------HHHHHHHHccCC-CHHHHHH
Q 019802 112 TYDILFGQEISLVGDAEKFLMLHKG-------AIQL------------------------ALAQLLVRNKVK-SIEDLMA 159 (335)
Q Consensus 112 lyqllf~~~iP~~a~v~~~v~~~k~-------~~~~------------------------~l~~~~~~~~~~-~~~~~~~ 159 (335)
+|+++|..++|++++++++|+..|. .+.+ ++|.|+.+++.. ..+++.+
T Consensus 76 ~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~~~~~~~ 155 (426)
T TIGR00563 76 GLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEELLAEFNALDARYLHPEWLVKRLQKAYPGQWQS 155 (426)
T ss_pred HHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhhcchhHhHHHHcCCCHHHHHHHHHHhHHHHHH
Confidence 7776665559999998888766532 1122 233444443221 1233334
Q ss_pred hhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHHHHHHcC
Q 019802 160 LYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA 238 (335)
Q Consensus 160 ~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~ 238 (335)
++++++.+||+|+|||++|++++++.+.|++ |+.+++++++|+++.+..+..+..++.|++|+|++||.+|++++..++
T Consensus 156 ~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~ 235 (426)
T TIGR00563 156 ICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLA 235 (426)
T ss_pred HHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhC
Confidence 5566788999999999999999999999987 788888899999999976667889999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCCCC--CCCCCceE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNLDP--KDPAYSEV 314 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~--~~~D~~~~~~--~~~~fd~V 314 (335)
+++|++|||+|||||+||++++++++ +++|+|+|++++|++.+++|++++|+. +.+ ..+|...++. ...+||.
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~- 312 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDR- 312 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCE-
Confidence 99999999999999999999999986 689999999999999999999999987 444 6677665543 3456774
Q ss_pred EEEEEecccccccc
Q 019802 315 SLIFCIFTWMIIMF 328 (335)
Q Consensus 315 ~~IllD~~cs~~g~ 328 (335)
|++|+||||+|+
T Consensus 313 --VllDaPcSg~G~ 324 (426)
T TIGR00563 313 --ILLDAPCSATGV 324 (426)
T ss_pred --EEEcCCCCCCcc
Confidence 999999999998
No 5
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.6e-44 Score=354.80 Aligned_cols=291 Identities=25% Similarity=0.330 Sum_probs=236.6
Q ss_pred hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccc---ccchHHH
Q 019802 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK---WKRQEEL 107 (335)
Q Consensus 32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~---~~~~~~l 107 (335)
|++|+.|+++|++++.++.+.+ .+..... ...++.+|++++++|||||+|++..||++|++. ++.. ....+.+
T Consensus 3 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~--~~~~~~l~~~~r~i 79 (444)
T PRK14902 3 MNARELALEVLIKVENNGAYSNIALNKVLK-KSELSDKDKALLTELVYGTIQRKLTLDYYLAPF--IKKRKKLDPWVRNL 79 (444)
T ss_pred ccHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHH--hhhhhhCCHHHHHH
Confidence 4789999999999988665543 3332211 134566899999999999999999999999984 5431 1235789
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhh-------hH----------------------------HHHHHHHHHHccCC
Q 019802 108 VYILTYDILFGQEISLVGDAEKFLMLHKG-------AI----------------------------QLALAQLLVRNKVK 152 (335)
Q Consensus 108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~-------~~----------------------------~~~l~~~~~~~~~~ 152 (335)
||+|+|||+|++.+|.+++++++|+..|. .+ .++++.|+.+++..
T Consensus 80 Lrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~ 159 (444)
T PRK14902 80 LRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWID 159 (444)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHH
Confidence 99999999999889999888877755431 01 12345565554433
Q ss_pred CH--HHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCch
Q 019802 153 SI--EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 229 (335)
Q Consensus 153 ~~--~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~ 229 (335)
.. +++.+++++++.++|+|+|||+.|++++++.+.|++ |+.++++++.|+++.+++ ..+..+++|.+|.+++||.+
T Consensus 160 ~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~ 238 (444)
T PRK14902 160 QYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEK-GNIAGTDLFKDGLITIQDES 238 (444)
T ss_pred HhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeC-CCcccChHHhCceEEEEChH
Confidence 21 223335567788999999999999999999998876 788888899999999976 56899999999999999999
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-C
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-D 308 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~ 308 (335)
|++++..+++++|++|||+|||||++|.++++.+++.++|+|+|+++.+++.+++|+++.|+.+|+++++|+.++... .
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 999999999999999999999999999999999877899999999999999999999999998999999999886422 2
Q ss_pred CCCceEEEEEEeccccccccc
Q 019802 309 PAYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 309 ~~fd~V~~IllD~~cs~~g~~ 329 (335)
..|| .|++|+||||+|+.
T Consensus 319 ~~fD---~Vl~D~Pcsg~G~~ 336 (444)
T PRK14902 319 EKFD---KILVDAPCSGLGVI 336 (444)
T ss_pred ccCC---EEEEcCCCCCCeee
Confidence 4566 49999999999974
No 6
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=6.3e-44 Score=350.39 Aligned_cols=288 Identities=19% Similarity=0.272 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----chHH
Q 019802 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (335)
Q Consensus 32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~~~~ 106 (335)
|++|+.|+++|.+++.++.+++ ++..... ...++.+|++|+++|||||+|++..||++|++ +++.++. ..++
T Consensus 2 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~rl~~~~r~ 78 (445)
T PRK14904 2 MTARELALQVLQELETGERKSDTLLHRMLE-RSSLERNDRALATELVNGVLRYRLQLDFIISR--FYHHDLEKAAPVLKN 78 (445)
T ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCChhhCCHHHHH
Confidence 5789999999999988776654 3332111 13456689999999999999999999999998 4543322 3578
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhhh-------h------------------------------HHHHHHHHHHHc
Q 019802 107 LVYILTYDILFGQEISLVGDAEKFLMLHKG-------A------------------------------IQLALAQLLVRN 149 (335)
Q Consensus 107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~-------~------------------------------~~~~l~~~~~~~ 149 (335)
+||+|+|||+|++.+|.++++++.|+..|. . ..++++.|+.++
T Consensus 79 iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~ 158 (445)
T PRK14904 79 ILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLER 158 (445)
T ss_pred HHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHH
Confidence 999999999999889999888777654321 0 012345566554
Q ss_pred cCCCH--HHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEec
Q 019802 150 KVKSI--EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQ 226 (335)
Q Consensus 150 ~~~~~--~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQ 226 (335)
+.... ++..++++..+.+||+|+|||+++++++++.+.|+. ++.+++.++ + ++.+... .....++|.+|.+++|
T Consensus 159 ~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~G~~~vq 235 (445)
T PRK14904 159 WIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGL-P-NFFLSKD-FSLFEPFLKLGLVSVQ 235 (445)
T ss_pred HHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCc-c-eEEEecc-ccccChHHhCcEEEEe
Confidence 43321 222334556777999999999999999999998876 776655543 3 4455432 2223389999999999
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
|++|++++..+++.+|++|||+|||||+||.++++.+++.++|+|+|+++.|++.+++|++++|+.+|+++++|+..+.+
T Consensus 236 d~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~ 315 (445)
T PRK14904 236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP 315 (445)
T ss_pred CHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc
Confidence 99999999999999999999999999999999999988788999999999999999999999999999999999988763
Q ss_pred CCCCCceEEEEEEeccccccccc
Q 019802 307 KDPAYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 307 ~~~~fd~V~~IllD~~cs~~g~~ 329 (335)
+..||. |++|+||||+|+.
T Consensus 316 -~~~fD~---Vl~D~Pcsg~g~~ 334 (445)
T PRK14904 316 -EEQPDA---ILLDAPCTGTGVL 334 (445)
T ss_pred -CCCCCE---EEEcCCCCCcchh
Confidence 346875 8999999999983
No 7
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-36 Score=285.85 Aligned_cols=170 Identities=32% Similarity=0.468 Sum_probs=148.7
Q ss_pred HHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHHHHH
Q 019802 157 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAA 235 (335)
Q Consensus 157 ~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~ 235 (335)
+..++.+++.++|+++|||+++.+.+++.+.|+. ++...+....+.++.+....++..+++|.+|+|++||.+||+++.
T Consensus 71 ~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~l~a~ 150 (355)
T COG0144 71 AEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPAL 150 (355)
T ss_pred HHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHHHHHH
Confidence 3344456677889999999999999999999987 555554445567888888888999999999999999999999999
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC---CC
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP---AY 311 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i-~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~---~f 311 (335)
+|+|+||++|||+||||||||+||+++|.+.|.+ +|+|++++|++.+++|++|+|+.|+.+++.|+..++.... .|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 9999999999999999999999999999986655 9999999999999999999999999999999987654322 36
Q ss_pred ceEEEEEEeccccccccc
Q 019802 312 SEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 312 d~V~~IllD~~cs~~g~~ 329 (335)
|+ ||||+||||+|+.
T Consensus 231 D~---iLlDaPCSg~G~i 245 (355)
T COG0144 231 DR---ILLDAPCSGTGVI 245 (355)
T ss_pred cE---EEECCCCCCCccc
Confidence 65 9999999999995
No 8
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=4.9e-36 Score=293.15 Aligned_cols=169 Identities=25% Similarity=0.276 Sum_probs=151.2
Q ss_pred HHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCC----CCCCCCcccccceEEecCchHHH
Q 019802 158 MALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG----CDLHVHPLIVNGCVFLQGKASSM 232 (335)
Q Consensus 158 ~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~g~~~iQd~~s~l 232 (335)
.+++++.+.++|.++|||++|++.+++.+.|++ ++.+++.+++++++.+... ..+..++.|..|.|++||++||+
T Consensus 23 ~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~l 102 (470)
T PRK11933 23 DDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALPLGNTAEHLSGLFYIQEASSML 102 (470)
T ss_pred HHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCCcccChHHHCCcEEEECHHHHH
Confidence 334446778999999999999999999999877 7888889999999998642 35789999999999999999999
Q ss_pred HHHHc--CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CC
Q 019802 233 VAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DP 309 (335)
Q Consensus 233 ~~~~l--~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~ 309 (335)
++.++ +++||++|||+||||||||+||+++|++.|.|+|+|++++|++.+++|++|+|+.||.+.+.|+..+... ..
T Consensus 103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~ 182 (470)
T PRK11933 103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPE 182 (470)
T ss_pred HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchh
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999876532 23
Q ss_pred CCceEEEEEEeccccccccc
Q 019802 310 AYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 310 ~fd~V~~IllD~~cs~~g~~ 329 (335)
.||. ||||+||||+||.
T Consensus 183 ~fD~---ILvDaPCSG~G~~ 199 (470)
T PRK11933 183 TFDA---ILLDAPCSGEGTV 199 (470)
T ss_pred hcCe---EEEcCCCCCCccc
Confidence 4665 9999999999983
No 9
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=3.7e-35 Score=271.59 Aligned_cols=165 Identities=35% Similarity=0.533 Sum_probs=145.5
Q ss_pred cCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCe--EEeCCCCCCCCCcccccceEEecCchHHHHHHHcC
Q 019802 162 QTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDL--LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA 238 (335)
Q Consensus 162 ~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~ 238 (335)
++++.++|.|+|||++|++++++.+.|++ |+.+++.++.+++ +.......+..++.|++|+|++||.+||+++..|+
T Consensus 3 ~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~L~ 82 (283)
T PF01189_consen 3 EANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALALD 82 (283)
T ss_dssp HHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHHHT
T ss_pred cccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEeccccccccccccc
Confidence 45678999999999999999999999988 8888888888888 44556678999999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCCCceEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPAYSEVSL 316 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~fd~V~~ 316 (335)
+++|+.|||+||||||||+|++++|++.|.|+|+|++.+|+..+++|++|+|+.++.+.+.|+..+.+. ...|| .
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd---~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFD---R 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEE---E
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccc---h
Confidence 999999999999999999999999999999999999999999999999999999999999999887432 22355 5
Q ss_pred EEEeccccccccc
Q 019802 317 IFCIFTWMIIMFH 329 (335)
Q Consensus 317 IllD~~cs~~g~~ 329 (335)
|++|+||||+|+.
T Consensus 160 VlvDaPCSg~G~i 172 (283)
T PF01189_consen 160 VLVDAPCSGLGTI 172 (283)
T ss_dssp EEEECSCCCGGGT
T ss_pred hhcCCCccchhhh
Confidence 9999999999983
No 10
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.1e-34 Score=263.13 Aligned_cols=286 Identities=35% Similarity=0.486 Sum_probs=216.5
Q ss_pred HHHHHHHHHHccchhhhhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccccchHHHHHHHHHHHH
Q 019802 37 EAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDIL 116 (335)
Q Consensus 37 ~A~~iL~~v~~~~~~~~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~~~~~lLrl~lyqll 116 (335)
.|..+|..+.+.. ++++.+.+..+.++-..++++|..+++++.+||.+++.+.+...........+.+..|.++
T Consensus 3 ~~~~~l~~~~~~~------~s~k~l~~~s~~q~~k~~l~~v~~~~k~r~~l~~i~~d~~~~~~~~~~~~~~~~~l~~~ll 76 (413)
T KOG2360|consen 3 EAAEILRDVEKKE------GSIKMLVYESSKQNPKRTLALVCETLKYRPVLDEILEDSELKDAKMLARLVHMVVLVHDLL 76 (413)
T ss_pred cchhhhhhHHhhh------hhHHHHHHhhhccchHHHHHHHHHHHhhhHHHHHHHhcchhhhhhhhcccccceeehhhhh
Confidence 4678888887643 3555556666667888899999999999999999998754322211111223346778888
Q ss_pred hcCCCCch-----hHHHHHHHHhhhhHHHHHHHHHHHccCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-
Q 019802 117 FGQEISLV-----GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK- 190 (335)
Q Consensus 117 f~~~iP~~-----a~v~~~v~~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~- 190 (335)
|....+.. .+..+...+.+..+.......-..++.....++.. ..+ .++|.|+|+||++.+.++.+..|..
T Consensus 77 ~~~~~~~~~~~~~~el~~~~~~~~~e~~~~~v~~~~k~~~~~~~~l~~--t~~-~~~pr~vRINtlk~~~~e~~~~L~~e 153 (413)
T KOG2360|consen 77 LSKIKRSGLMIDKRELKVIRLRLILRLKIETVMLKKKRKVKSLRELKL--TMK-IPLPRYVRINTLKGTTDEALDYLDYE 153 (413)
T ss_pred hcccccccceeccchhhhhhHHHHhhhHHHHHHHHhhhhHHHHHHhhc--cCC-CCCceeEEeecccCchhhhhhhhhhh
Confidence 87754422 23344443333333221111111122222222221 123 6899999999999999998888764
Q ss_pred c---------ccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHH
Q 019802 191 Q---------FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261 (335)
Q Consensus 191 ~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~ 261 (335)
+ -.+..+++.+..+.++.+..|..+++|+.|++++||.+|++++++|+|.+|++|+|.||+||.||+|++.
T Consensus 154 ~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~ 233 (413)
T KOG2360|consen 154 KWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAA 233 (413)
T ss_pred hhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHH
Confidence 1 1233466777888888777899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEecccccccccccc
Q 019802 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFY 332 (335)
Q Consensus 262 ~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g~~~~~ 332 (335)
.|++.|+|+|+|.++.|.+.++..+...|+.+++...+|+... +.+..|..|.+||+||+|||+|||.-.
T Consensus 234 i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~ 303 (413)
T KOG2360|consen 234 IMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQ 303 (413)
T ss_pred HhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccce
Confidence 9999999999999999999999999999999999999999998 666779999999999999999998643
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.97 E-value=2.2e-30 Score=238.05 Aligned_cols=154 Identities=28% Similarity=0.329 Sum_probs=136.8
Q ss_pred EEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCC-CCCCCCCcccccceEEecCchHHHHHHHcCCCCCCEEEEEc
Q 019802 172 VRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 249 (335)
Q Consensus 172 lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~c 249 (335)
+|||++|++++++++.|++ ++.+++.. .+.++.+.. ...+..++.|.+|++++||.+||+++..+++++|++|||+|
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ 79 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMA 79 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEEC
Confidence 6999999999999999987 77666544 456676653 34588999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEeccccccccc
Q 019802 250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 250 agpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g~~ 329 (335)
||||+||+++++++++.|.|+|+|+++.|++.+++|++++|+.||++++.|+..++.....|| .|++|+||||+|+.
T Consensus 80 ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD---~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 80 AAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFD---AILLDAPCSGEGVI 156 (264)
T ss_pred CCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCC---EEEEcCCCCCCccc
Confidence 999999999999998889999999999999999999999999999999999987765444566 59999999999984
No 12
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=242.68 Aligned_cols=173 Identities=27% Similarity=0.372 Sum_probs=149.4
Q ss_pred HHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccc-cCCCCCeEEeC-CCCCCCCCcccccceEEecCchH
Q 019802 154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQK-DDLVPDLLILP-PGCDLHVHPLIVNGCVFLQGKAS 230 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~g~~~iQd~~s 230 (335)
..+..+.++++..+.|+++|.||+|+-+-+....|.. |+...+ ..|..-++++. +..++..++.|..|++.+|+.+|
T Consensus 151 ~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS 230 (460)
T KOG1122|consen 151 LVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASS 230 (460)
T ss_pred HHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCcc
Confidence 4445556677888999999999999988888777765 554433 34666777764 45789999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--C
Q 019802 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--D 308 (335)
Q Consensus 231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~ 308 (335)
.++++.|+|+||++||||||||||||+|+|.+|+++|.|+|.|.+..|++.++.|+.++|+.|..+.+.|..+++.. .
T Consensus 231 ~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 231 FLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP 310 (460)
T ss_pred cceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877522 1
Q ss_pred CCCceEEEEEEeccccccccc
Q 019802 309 PAYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 309 ~~fd~V~~IllD~~cs~~g~~ 329 (335)
++||+ ||||+||||+|+-
T Consensus 311 ~~fDR---VLLDAPCSGtgvi 328 (460)
T KOG1122|consen 311 GSFDR---VLLDAPCSGTGVI 328 (460)
T ss_pred cccce---eeecCCCCCCccc
Confidence 26776 9999999999973
No 13
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.9e-19 Score=167.28 Aligned_cols=116 Identities=26% Similarity=0.265 Sum_probs=99.7
Q ss_pred ccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC---CeEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 019802 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIE 295 (335)
Q Consensus 219 ~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~---~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~ 295 (335)
.-|.++.||.+|++++.+|+++||++|||||||||+||.+|.+.+.. .|.|+|.|.+..|+..+...++++.-.++.
T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLL 212 (375)
T ss_pred ccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCccee
Confidence 56889999999999999999999999999999999999999887642 479999999999999999999999888899
Q ss_pred EEeccCCCCCCC------CCCCceEEEEEEecccccccccccccC
Q 019802 296 VLHGDFLNLDPK------DPAYSEVSLIFCIFTWMIIMFHGFYVN 334 (335)
Q Consensus 296 ~~~~D~~~~~~~------~~~fd~V~~IllD~~cs~~g~~~~~~~ 334 (335)
+.++|+...+.. +..+...|.||||+|||++|++.-..|
T Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~ 257 (375)
T KOG2198|consen 213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPN 257 (375)
T ss_pred eecccceeccccccccCchhhhhhcceeEEecccCCCcccccCch
Confidence 999998776643 224455566999999999999765443
No 14
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.55 E-value=3.6e-14 Score=116.05 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccc----cchHH
Q 019802 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEE 106 (335)
Q Consensus 32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~----~~~~~ 106 (335)
|++|..|+++|.++..++...+ .+..... ... +.+|++++++|||||+||+..||++|++ ++++++ ...+.
T Consensus 1 ~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~-~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~--~l~~~~~~~~~~~~~ 76 (126)
T cd00620 1 MNARSTAAEVLRDVLQRGASLNAVLSALQK-KDK-SDRDRGLATELVYGTLRWLALLDWIINP--LLKKPDVGKDPDVRN 76 (126)
T ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence 5679999999999988665443 3332111 112 4579999999999999999999999998 455543 23578
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (335)
Q Consensus 107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~ 149 (335)
+|++|+|||+|++ +|+++.+++.|+..|.. -..+|.+.+.+.
T Consensus 77 iLr~a~~el~~~~-~p~~avvneaVelak~~~~~~~~~fVNaVLr~ 121 (126)
T cd00620 77 LLRLGLYQLLYLD-VPPHAAVDETVEIAKIRKDLGRAGLVNAVLRR 121 (126)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 9999999999998 99999999999876531 223466665554
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.6e-13 Score=123.07 Aligned_cols=84 Identities=29% Similarity=0.474 Sum_probs=76.9
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~ 313 (335)
...+...+|++|||+|||+|..+.++++..+ .|+|+++|+|++||+.+++.+...|..+|+++++||+++|++|++||.
T Consensus 44 i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred HHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCE
Confidence 4455666999999999999999999999987 799999999999999999999999998899999999999999999998
Q ss_pred EEEEE
Q 019802 314 VSLIF 318 (335)
Q Consensus 314 V~~Il 318 (335)
|+..+
T Consensus 123 vt~~f 127 (238)
T COG2226 123 VTISF 127 (238)
T ss_pred EEeee
Confidence 76544
No 16
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.49 E-value=3.2e-13 Score=110.85 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccc-cccc----chHHH
Q 019802 34 ARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWK----RQEEL 107 (335)
Q Consensus 34 aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~-~~~~----~~~~l 107 (335)
+|..|+++|.+++.++.+.+ .+..... ...++.+|++++++|||||+||++.||++|++ +++ .++. ..+.+
T Consensus 4 ~R~~a~~~l~~~~~~~~~~~~~l~~~~~-~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~--~~~~~~~~~l~~~~~~i 80 (129)
T TIGR01951 4 ARELALQALYQWELSGNDVEEIIEEFLE-ERELDEEDREYFLELVRGVLENQEEIDELISP--HLKDWSLERLDPVDRAI 80 (129)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHHHHH
Confidence 69999999999988665543 3332211 12456689999999999999999999999998 453 3332 24789
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (335)
Q Consensus 108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~ 149 (335)
|++|+||++|++++|+++.++++|+..|.. -..+|.+.+.|.
T Consensus 81 Lr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~ 125 (129)
T TIGR01951 81 LRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDK 125 (129)
T ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHH
Confidence 999999999996689999999999876531 123466665554
No 17
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.48 E-value=4.4e-13 Score=110.15 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccc-c----cchHHH
Q 019802 34 ARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK-W----KRQEEL 107 (335)
Q Consensus 34 aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~-~----~~~~~l 107 (335)
+|+.|+++|.+++.++.+.+ .+..... ....+.+|++++++|||||+||+..||++|++ +++++ + ...+.+
T Consensus 4 ~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~--~l~~~~~~~l~~~~~~i 80 (130)
T cd00619 4 ARELAVQALYAWELAPEILAEVVSLLEL-LQYKSKKVLPFALKLVRGVLENIEEIDELIEK--HLRNWSLDRLAIVERAI 80 (130)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCCHHHhhHHHHHH
Confidence 69999999999998665543 3322111 12345679999999999999999999999998 45533 1 134789
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (335)
Q Consensus 108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~ 149 (335)
|++|+||++|++.+|+++.++++|+..|.. -..+|.+.+.+.
T Consensus 81 Lria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~ 125 (130)
T cd00619 81 LRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDK 125 (130)
T ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHH
Confidence 999999999998899999999999876531 123466665554
No 18
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.47 E-value=5.3e-13 Score=110.72 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccc-cccc----chHH
Q 019802 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWK----RQEE 106 (335)
Q Consensus 33 ~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~-~~~~----~~~~ 106 (335)
.+|+.|+++|.++..++.+.+ .+..... ...++.+|++|+++|||||+||+..||++|.+ +++ .++. ..+.
T Consensus 5 ~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~--~l~~~~~~~l~~~~~~ 81 (137)
T PRK00202 5 KAREAAVQALYQWELSGNDIAEIIEAQLL-EEQYDKADPAYFRSLVRGVVENQAELDELISP--YLKDWTLERLDPVERA 81 (137)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHHHH
Confidence 479999999999988665543 3332211 12355689999999999999999999999998 453 2322 2478
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 019802 107 LVYILTYDILFGQEISLVGDAEKFLMLHK 135 (335)
Q Consensus 107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k 135 (335)
+||+|+||++|++++|+++.++++|+..+
T Consensus 82 iLr~a~~Ell~~~~~p~~~vinEaV~lak 110 (137)
T PRK00202 82 ILRLALYELLFRDDVPYKVVINEAIELAK 110 (137)
T ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence 99999999999966999999999998765
No 19
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.47 E-value=5.7e-13 Score=110.04 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHH-------ccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccc-ccccc
Q 019802 32 YFARREAAKVLRLVL-------RGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASIL-NSKWK 102 (335)
Q Consensus 32 ~~aR~~A~~iL~~v~-------~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll-~~~~~ 102 (335)
+++|+.|+++|+++. ..+.+.+ .+... ......+.+|++|+++||+||+||+..||++|.+ ++ +.++.
T Consensus 1 ~~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~--~~~~~~~~ 77 (134)
T PF01029_consen 1 RKARELALQALYQVEFNDEEDEEEGQFLDEALEEE-LEESELSEEDRAFARELVYGVLRNKEELDALISK--LLKNWPLE 77 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSTSSTGG
T ss_pred ChHHHHHHHHHHHHHccCCchhhhhhhHHHHHhhc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCcc
Confidence 468999999999993 3222222 22111 1124456789999999999999999999999998 45 33332
Q ss_pred ----chHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHH
Q 019802 103 ----RQEELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVR 148 (335)
Q Consensus 103 ----~~~~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~ 148 (335)
..+.+||+|+|||+|++++|++++++++|+..|.. -..+|.+.+.+
T Consensus 78 rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~ 130 (134)
T PF01029_consen 78 RLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLR 130 (134)
T ss_dssp GSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHH
Confidence 34789999999999997799999999999876542 13345555554
No 20
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.42 E-value=6e-13 Score=120.03 Aligned_cols=87 Identities=28% Similarity=0.429 Sum_probs=63.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f 311 (335)
.+...+.+++|++|||+|||+|..+..+++..++.++|+++|+|+.||+.+++++++.+..+|+++++|++++++++++|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 34556778899999999999999999999988888999999999999999999999999989999999999999999999
Q ss_pred ceEEEEE
Q 019802 312 SEVSLIF 318 (335)
Q Consensus 312 d~V~~Il 318 (335)
|.|.+-+
T Consensus 118 D~v~~~f 124 (233)
T PF01209_consen 118 DAVTCSF 124 (233)
T ss_dssp EEEEEES
T ss_pred eEEEHHh
Confidence 9765433
No 21
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=2.4e-11 Score=108.40 Aligned_cols=92 Identities=24% Similarity=0.289 Sum_probs=79.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~ 309 (335)
...+...+++++|++|||+|||+|..+..+++..+.+++|+++|+++.+++.+++++++.|++|++++++|+.+..+...
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34556677899999999999999999999999877678999999999999999999999999999999999987655445
Q ss_pred CCceEEEEEEecccc
Q 019802 310 AYSEVSLIFCIFTWM 324 (335)
Q Consensus 310 ~fd~V~~IllD~~cs 324 (335)
.||. |++++++.
T Consensus 146 ~fD~---Ii~~~~~~ 157 (215)
T TIGR00080 146 PYDR---IYVTAAGP 157 (215)
T ss_pred CCCE---EEEcCCcc
Confidence 6875 77886654
No 22
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.28 E-value=3.8e-11 Score=102.84 Aligned_cols=87 Identities=26% Similarity=0.403 Sum_probs=75.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019802 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (335)
Q Consensus 231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~ 310 (335)
.+....|.+.||++++|+|||+|+.|..++ ++.+.++|+|+|.++++++..++|++++|++|++++.+|+-+......+
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~ 102 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPS 102 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCC
Confidence 344556889999999999999999999999 7788999999999999999999999999999999999999776554346
Q ss_pred CceEEEEEEec
Q 019802 311 YSEVSLIFCIF 321 (335)
Q Consensus 311 fd~V~~IllD~ 321 (335)
||. ||+--
T Consensus 103 ~da---iFIGG 110 (187)
T COG2242 103 PDA---IFIGG 110 (187)
T ss_pred CCE---EEECC
Confidence 775 66643
No 23
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=6.6e-11 Score=105.36 Aligned_cols=98 Identities=26% Similarity=0.316 Sum_probs=81.9
Q ss_pred ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (335)
Q Consensus 221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D 300 (335)
|....+..-...+...+++++|++|||+|||+|..|..+++.++..++|+++|+++.+++.+++++++.|+.|++++++|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 33344444445566678899999999999999999999999987778999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEEEec
Q 019802 301 FLNLDPKDPAYSEVSLIFCIF 321 (335)
Q Consensus 301 ~~~~~~~~~~fd~V~~IllD~ 321 (335)
+....+....||. |+++.
T Consensus 136 ~~~~~~~~~~fD~---I~~~~ 153 (212)
T PRK13942 136 GTLGYEENAPYDR---IYVTA 153 (212)
T ss_pred cccCCCcCCCcCE---EEECC
Confidence 9876666667886 56553
No 24
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.24 E-value=1.2e-10 Score=95.47 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcc-chhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccc-----cchHH
Q 019802 34 ARREAAKVLRLVLRG-DARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW-----KRQEE 106 (335)
Q Consensus 34 aR~~A~~iL~~v~~~-~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~-----~~~~~ 106 (335)
+|+.|+++|.++... +...+ .+.... ...++.+|++++++|||||+||+..||++|++ +++.++ +..+.
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~--~~~~~~~~r~~~~~~~ 77 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSALE--KLQLAKKDRPFALELVYGVLRNLPELDDIISP--LLKKWLLDRLDKVDRA 77 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHH--HcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCChhhhhHHHHH
Confidence 699999999999875 44433 222211 12344579999999999999999999999998 455442 23456
Q ss_pred HHHHHHHHHHhcC-CCCchhHHHHHHHHhhhhH---HHHHHHHHHHc
Q 019802 107 LVYILTYDILFGQ-EISLVGDAEKFLMLHKGAI---QLALAQLLVRN 149 (335)
Q Consensus 107 lLrl~lyqllf~~-~iP~~a~v~~~v~~~k~~~---~~~l~~~~~~~ 149 (335)
+++++.++++++. ++|++++++++|+..|... ..+|.+.+.+.
T Consensus 78 il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~ 124 (129)
T cd00447 78 ILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRR 124 (129)
T ss_pred HHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 7776666666654 5899999999998765321 22455555543
No 25
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.21 E-value=1.5e-10 Score=104.86 Aligned_cols=95 Identities=22% Similarity=0.316 Sum_probs=74.1
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 307 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~ 307 (335)
.+.++...++..||++||+.|+|+|..|..|+..+++.|+|+.+|+++.+.+.+++|+++.|+. ||.+.+.|..+-.+.
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 3446677899999999999999999999999999999999999999999999999999999995 799999999653332
Q ss_pred CCCCceEEEEEEeccc
Q 019802 308 DPAYSEVSLIFCIFTW 323 (335)
Q Consensus 308 ~~~fd~V~~IllD~~c 323 (335)
...=..+|+||||.|.
T Consensus 108 ~~~~~~~DavfLDlp~ 123 (247)
T PF08704_consen 108 EELESDFDAVFLDLPD 123 (247)
T ss_dssp TT-TTSEEEEEEESSS
T ss_pred ccccCcccEEEEeCCC
Confidence 1111457789999875
No 26
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=2.1e-10 Score=101.57 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=75.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019802 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~ 309 (335)
..+...+++.++++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|+++.|+. +++++++|+.+..+...
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 34456678889999999999999999999999876789999999999999999999999986 49999999987655555
Q ss_pred CCceEEEEEEecc
Q 019802 310 AYSEVSLIFCIFT 322 (335)
Q Consensus 310 ~fd~V~~IllD~~ 322 (335)
+||. |+++..
T Consensus 142 ~fD~---Ii~~~~ 151 (205)
T PRK13944 142 PFDA---IIVTAA 151 (205)
T ss_pred CccE---EEEccC
Confidence 6775 666644
No 27
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.16 E-value=1.9e-10 Score=101.93 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=79.1
Q ss_pred ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (335)
Q Consensus 221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D 300 (335)
|....|-.--..+.+.|+++||++|||+|||+|..|..|+.+.++.+.|+++|+++...+.++++++++|..||.++++|
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 34444333334455678899999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEEEecccc
Q 019802 301 FLNLDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 301 ~~~~~~~~~~fd~V~~IllD~~cs 324 (335)
+....+....||. |++.+.|.
T Consensus 132 g~~g~~~~apfD~---I~v~~a~~ 152 (209)
T PF01135_consen 132 GSEGWPEEAPFDR---IIVTAAVP 152 (209)
T ss_dssp GGGTTGGG-SEEE---EEESSBBS
T ss_pred hhhccccCCCcCE---EEEeeccc
Confidence 9876555556775 88887665
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.13 E-value=5e-10 Score=100.67 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=73.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f 311 (335)
.+...+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++.++++++++++|+.+++..+++|
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 34456778889999999999999999999987777899999999999999999999999989999999999887767788
Q ss_pred ceE
Q 019802 312 SEV 314 (335)
Q Consensus 312 d~V 314 (335)
|.|
T Consensus 116 D~V 118 (231)
T TIGR02752 116 DYV 118 (231)
T ss_pred cEE
Confidence 864
No 29
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.13 E-value=8.6e-11 Score=108.99 Aligned_cols=92 Identities=23% Similarity=0.279 Sum_probs=77.7
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAY 311 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-~~f 311 (335)
+...+.++||+.+||++||.||.|..+++.++++++|+|+|.++.+++.++++++. ..+++++++|+.++.... ...
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence 45567788999999999999999999999987779999999999999999999876 467999999999875321 123
Q ss_pred ceEEEEEEecccccc
Q 019802 312 SEVSLIFCIFTWMII 326 (335)
Q Consensus 312 d~V~~IllD~~cs~~ 326 (335)
..||+|++|+++|..
T Consensus 89 ~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 89 GKVDGILLDLGVSSP 103 (296)
T ss_pred CccCEEEECCCcccc
Confidence 357789999999964
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.13 E-value=2.6e-10 Score=97.98 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=77.1
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
|.++.++...+...++.+|||+|||+|..+..++... +..+|+++|+++..++.+++|++..++.++++++.|..+...
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 5678888887777789999999999999999999874 457899999999999999999999999889999999876443
Q ss_pred CCCCCceEEEEEEeccccc
Q 019802 307 KDPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 307 ~~~~fd~V~~IllD~~cs~ 325 (335)
...|| .|+++||...
T Consensus 96 -~~~fD---~Iv~NPP~~~ 110 (170)
T PF05175_consen 96 -DGKFD---LIVSNPPFHA 110 (170)
T ss_dssp -TTCEE---EEEE---SBT
T ss_pred -cccee---EEEEccchhc
Confidence 44565 5999999543
No 31
>PTZ00146 fibrillarin; Provisional
Probab=99.12 E-value=3.8e-10 Score=104.01 Aligned_cols=92 Identities=27% Similarity=0.293 Sum_probs=68.6
Q ss_pred hHHHHHHH------cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 229 ASSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 229 ~s~l~~~~------l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
-|-|.+.+ +.+++|++|||+|||||.+|.|++..+++.++|+|+|+++++++.+.+.++.. +||.++..|+.
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~ 191 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDAR 191 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCcc
Confidence 45555444 45789999999999999999999999988899999999998877766665533 58899999987
Q ss_pred CCCCCCCCCceEEEEEEecc
Q 019802 303 NLDPKDPAYSEVSLIFCIFT 322 (335)
Q Consensus 303 ~~~~~~~~fd~V~~IllD~~ 322 (335)
...........||.||+|..
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC
Confidence 53210001123556899874
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.11 E-value=6.8e-10 Score=93.44 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCceEEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVSLIF 318 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-~~fd~V~~Il 318 (335)
+.+.+|||+|||+|..+..++....+.++++++|+|+.+++.+++++++.+++|+++.++|+.+++... ..|| .|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D---~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFD---III 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEE---EEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCee---EEE
Confidence 467899999999999999999766677899999999999999999999999999999999999966321 3455 577
Q ss_pred Eeccc
Q 019802 319 CIFTW 323 (335)
Q Consensus 319 lD~~c 323 (335)
++.++
T Consensus 79 ~~~~l 83 (152)
T PF13847_consen 79 SNGVL 83 (152)
T ss_dssp EESTG
T ss_pred EcCch
Confidence 77555
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.11 E-value=6.1e-10 Score=102.31 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=70.4
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEeccCCCCCCCCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~---~g~~ni~~~~~D~~~~~~~~~ 309 (335)
+...+.+.++++|||+|||+|..+..+++.+++.++|+++|+|+.|++.++++... .+..+++++++|+.+++..++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 34456778899999999999999999998877678999999999999999887642 345689999999999998888
Q ss_pred CCceEE
Q 019802 310 AYSEVS 315 (335)
Q Consensus 310 ~fd~V~ 315 (335)
+||.|.
T Consensus 145 sfD~V~ 150 (261)
T PLN02233 145 YFDAIT 150 (261)
T ss_pred CEeEEE
Confidence 898754
No 34
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=4.4e-10 Score=100.48 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=88.4
Q ss_pred cccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEE
Q 019802 218 IVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEV 296 (335)
Q Consensus 218 ~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~ 296 (335)
|+.+--.+--+.|.+++..++..||++|||+|+|+|..|..||..+++.|+|+.+|+.+..++.+++|++..|+.| |.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 5555556666677788889999999999999999999999999988999999999999999999999999999987 999
Q ss_pred EeccCCCCCCCCCCCceEEEEEEecc
Q 019802 297 LHGDFLNLDPKDPAYSEVSLIFCIFT 322 (335)
Q Consensus 297 ~~~D~~~~~~~~~~fd~V~~IllD~~ 322 (335)
..+|..+.-..+ .||+|+||.|
T Consensus 151 ~~~Dv~~~~~~~----~vDav~LDmp 172 (256)
T COG2519 151 KLGDVREGIDEE----DVDAVFLDLP 172 (256)
T ss_pred Eecccccccccc----ccCEEEEcCC
Confidence 999998876554 4556999976
No 35
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.10 E-value=5e-10 Score=106.31 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~ 309 (335)
+..++.+.++++|+.|||.|||+|+.+..++.. ..+|+++|+++.+++.++.|++..|+.++.+.++|+.+++..+.
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 344455667889999999999999998876653 46899999999999999999999999889999999999887666
Q ss_pred CCceEEEEEEeccccc
Q 019802 310 AYSEVSLIFCIFTWMI 325 (335)
Q Consensus 310 ~fd~V~~IllD~~cs~ 325 (335)
.|| .|++|||+..
T Consensus 248 ~~D---~Iv~dPPyg~ 260 (329)
T TIGR01177 248 SVD---AIATDPPYGR 260 (329)
T ss_pred CCC---EEEECCCCcC
Confidence 676 5999999864
No 36
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.10 E-value=1.2e-10 Score=98.69 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCce-EEEEEEe
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSE-VSLIFCI 320 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~-V~~IllD 320 (335)
..|+|+|||-||-|+++|... .+|+|+|+++.|++.++.|++-+|+ ++|.++++|+.++..... ... +|+||++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~-~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK-SNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc-ccccccEEEEC
Confidence 369999999999999999873 4799999999999999999999997 479999999988654221 111 4579999
Q ss_pred ccccccccc
Q 019802 321 FTWMIIMFH 329 (335)
Q Consensus 321 ~~cs~~g~~ 329 (335)
|||-|....
T Consensus 77 PPWGGp~Y~ 85 (163)
T PF09445_consen 77 PPWGGPSYS 85 (163)
T ss_dssp --BSSGGGG
T ss_pred CCCCCcccc
Confidence 999987664
No 37
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=5e-10 Score=100.56 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=67.8
Q ss_pred HHHHHHH--cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-
Q 019802 230 SSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP- 306 (335)
Q Consensus 230 s~l~~~~--l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~- 306 (335)
+.+++.+ +++++|++|||+|||+|+.+.+++..++ .|+|+|+|+++.|++.+.+++++. .||.++.+|+.....
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERY 135 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchh
Confidence 3444433 7788999999999999999999999886 689999999999999988887754 689999999975311
Q ss_pred --CCCCCceEEEEEEecc
Q 019802 307 --KDPAYSEVSLIFCIFT 322 (335)
Q Consensus 307 --~~~~fd~V~~IllD~~ 322 (335)
-..+|| .|+.|.+
T Consensus 136 ~~l~~~~D---~i~~d~~ 150 (226)
T PRK04266 136 AHVVEKVD---VIYQDVA 150 (226)
T ss_pred hhccccCC---EEEECCC
Confidence 112354 5777654
No 38
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=8.9e-10 Score=103.80 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=73.3
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~ 313 (335)
...++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++..|++++.++++|+....+....||.
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccE
Confidence 34566889999999999999999999998876678999999999999999999999999999999999876655456765
Q ss_pred EEEEEEecc
Q 019802 314 VSLIFCIFT 322 (335)
Q Consensus 314 V~~IllD~~ 322 (335)
|+++..
T Consensus 153 ---Ii~~~g 158 (322)
T PRK13943 153 ---IFVTVG 158 (322)
T ss_pred ---EEECCc
Confidence 666543
No 39
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.09 E-value=3.4e-10 Score=106.77 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=71.5
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceE
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEV 314 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V 314 (335)
.+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++|++..|++|++++++|+.++.. ....||
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D-- 242 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPD-- 242 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCe--
Confidence 344446789999999999999999984 36899999999999999999999999889999999987653 223465
Q ss_pred EEEEEecccccc
Q 019802 315 SLIFCIFTWMII 326 (335)
Q Consensus 315 ~~IllD~~cs~~ 326 (335)
.|++|||+.|.
T Consensus 243 -~Vv~dPPr~G~ 253 (315)
T PRK03522 243 -LVLVNPPRRGI 253 (315)
T ss_pred -EEEECCCCCCc
Confidence 59999998864
No 40
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.5e-09 Score=95.00 Aligned_cols=96 Identities=25% Similarity=0.341 Sum_probs=82.2
Q ss_pred cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (335)
Q Consensus 220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~ 299 (335)
.|.+.-|-.--..+..+|++++|++||++|||+|.-|..||++. ++|+++|+.+.-.+.+++|++.+|+.||.++++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 56655555444556778999999999999999999999999995 499999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCceEEEEEEec
Q 019802 300 DFLNLDPKDPAYSEVSLIFCIF 321 (335)
Q Consensus 300 D~~~~~~~~~~fd~V~~IllD~ 321 (335)
|+..--+....||. |++.+
T Consensus 128 DG~~G~~~~aPyD~---I~Vta 146 (209)
T COG2518 128 DGSKGWPEEAPYDR---IIVTA 146 (209)
T ss_pred CcccCCCCCCCcCE---EEEee
Confidence 99886666677996 66653
No 41
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.06 E-value=1.5e-09 Score=95.06 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=56.6
Q ss_pred ccCHHHHHHHHHHHHhchHHHHHHHhhccccc-----ccccchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 019802 67 VKNKKATYALVCQTLKHLSIIKQVLDSASILN-----SKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHK 135 (335)
Q Consensus 67 ~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~-----~~~~~~~~lLrl~lyqllf~~~iP~~a~v~~~v~~~k 135 (335)
.++++|+++|||||+||+..||++|++ +++ +.+...+.+||+|+||++|++ +|+++++++.|+..|
T Consensus 110 ~~~r~~a~~Lv~gvlr~~~~LD~iI~~--~l~~W~l~rL~~idr~ILRlavyELl~l~-~P~~vaINEAVeLAK 180 (207)
T PRK09634 110 EEVREYALERIGAVIRNRKEIDQLLDT--VMVGWQLKRLPRIDRDILRLAVVEILFLN-TPAAVAINEAVELAK 180 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH--HhccccccCCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHH
Confidence 579999999999999999999999998 454 212345899999999999996 999999999987765
No 42
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.05 E-value=9.2e-10 Score=108.59 Aligned_cols=86 Identities=22% Similarity=0.218 Sum_probs=73.1
Q ss_pred HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----CCCCC
Q 019802 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD----PKDPA 310 (335)
Q Consensus 235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~----~~~~~ 310 (335)
..+.+.+|++|||+|||+|..+..++... .+|+++|+|+.+++.+++|++..|++|++++++|+.+.. ..+..
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence 34567789999999999999999999873 689999999999999999999999999999999997632 22345
Q ss_pred CceEEEEEEecccccc
Q 019802 311 YSEVSLIFCIFTWMII 326 (335)
Q Consensus 311 fd~V~~IllD~~cs~~ 326 (335)
|| .|++|||.+|.
T Consensus 368 fD---~Vi~dPPr~g~ 380 (443)
T PRK13168 368 FD---KVLLDPPRAGA 380 (443)
T ss_pred CC---EEEECcCCcCh
Confidence 76 48999999874
No 43
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.04 E-value=2.7e-09 Score=94.87 Aligned_cols=97 Identities=24% Similarity=0.235 Sum_probs=77.3
Q ss_pred eEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019802 222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (335)
Q Consensus 222 ~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~ 301 (335)
.+..+-.....+...+.++++++|||+|||+|..+..++.+. ++|+++|+++.+++.+++++++.|+.++++.++|+
T Consensus 59 ~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 135 (212)
T PRK00312 59 QTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG 135 (212)
T ss_pred CeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc
Confidence 333343334455567888999999999999999999888874 48999999999999999999999999999999998
Q ss_pred CCCCCCCCCCceEEEEEEecccc
Q 019802 302 LNLDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 302 ~~~~~~~~~fd~V~~IllD~~cs 324 (335)
.+..+....||. |+++.++.
T Consensus 136 ~~~~~~~~~fD~---I~~~~~~~ 155 (212)
T PRK00312 136 WKGWPAYAPFDR---ILVTAAAP 155 (212)
T ss_pred ccCCCcCCCcCE---EEEccCch
Confidence 764444456875 77776553
No 44
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.02 E-value=2e-09 Score=95.85 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=75.4
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCC-----eEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEeccCCCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLNL 304 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~-----g~i~a~D~~~~rl~~~~~~~~~~g~~---ni~~~~~D~~~~ 304 (335)
.+.-|+|.+|.+|||+|+|+|..|+.+....++. ++|+.+|++++||+..+++.++.++. .+.++++|++++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 3556889999999999999999999999988764 89999999999999999999887773 389999999999
Q ss_pred CCCCCCCceEEEE
Q 019802 305 DPKDPAYSEVSLI 317 (335)
Q Consensus 305 ~~~~~~fd~V~~I 317 (335)
|+++++||.++.-
T Consensus 172 pFdd~s~D~yTia 184 (296)
T KOG1540|consen 172 PFDDDSFDAYTIA 184 (296)
T ss_pred CCCCCcceeEEEe
Confidence 9999999976543
No 45
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.02 E-value=2.5e-09 Score=93.97 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=72.3
Q ss_pred ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (335)
Q Consensus 221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D 300 (335)
|.-..|....+++...+++.++++|||+|||+|..+..++... +.++|+++|+++.+++.+++|+++.|+.+++++++|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 4446677788878888888999999999999999999998764 458999999999999999999999999899999999
Q ss_pred CCC
Q 019802 301 FLN 303 (335)
Q Consensus 301 ~~~ 303 (335)
+.+
T Consensus 99 ~~~ 101 (196)
T PRK07402 99 APE 101 (196)
T ss_pred hHH
Confidence 865
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.01 E-value=2.9e-09 Score=92.87 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS 315 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~ 315 (335)
+++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++..|+++++++++|+.+++. .++||.|.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEE
Confidence 348999999999999999999864 468999999999999999999999999889999999999876 66788643
No 47
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.01 E-value=8.5e-10 Score=106.91 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=83.8
Q ss_pred CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (335)
Q Consensus 215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-- 292 (335)
..+.+.|.|.-|.....++..+ .+|.+|||+|||+|+.+.+++. ++..+|+++|+|+.+++.+++|++..|+.
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 4678999999997776666554 3588999999999999887653 44569999999999999999999999984
Q ss_pred cEEEEeccCCCCCC----CCCCCceEEEEEEeccccc
Q 019802 293 NIEVLHGDFLNLDP----KDPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 293 ni~~~~~D~~~~~~----~~~~fd~V~~IllD~~cs~ 325 (335)
+++++++|+.++.. ....||. |++|||+..
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDl---VilDPP~f~ 305 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDV---IVMDPPKFV 305 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCE---EEECCCCCC
Confidence 79999999977532 2346875 899999853
No 48
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.00 E-value=3.2e-09 Score=93.50 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=71.2
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCC-CCC
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDP-KDP 309 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~-~~~ 309 (335)
+....+++.++++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++..| ..++.++++|+.+..+ ...
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 33445788899999999999999999999887777899999999999999999999999 4789999999976432 234
Q ss_pred CCceEEEEEEe
Q 019802 310 AYSEVSLIFCI 320 (335)
Q Consensus 310 ~fd~V~~IllD 320 (335)
.||. |++.
T Consensus 111 ~~D~---V~~~ 118 (198)
T PRK00377 111 KFDR---IFIG 118 (198)
T ss_pred CCCE---EEEC
Confidence 5775 5553
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.99 E-value=6.3e-09 Score=83.63 Aligned_cols=83 Identities=25% Similarity=0.344 Sum_probs=68.4
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCc
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYS 312 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~-~~~~~fd 312 (335)
...+.+.++++|||+|||+|..+..+++.+++ ++|+++|+++.+++.++++++..++.+++++.+|+.... ....+||
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 44566778899999999999999999998654 899999999999999999999999988999999987532 2234677
Q ss_pred eEEEEEEe
Q 019802 313 EVSLIFCI 320 (335)
Q Consensus 313 ~V~~IllD 320 (335)
. |+++
T Consensus 91 ~---v~~~ 95 (124)
T TIGR02469 91 R---VFIG 95 (124)
T ss_pred E---EEEC
Confidence 5 5554
No 50
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.98 E-value=4e-09 Score=83.54 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccC-CCCCCCCCCCceEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDF-LNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~-~~~~~~~~~fd~V~~Il 318 (335)
||.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++.+.+. .+|.++++|+ ...... ..|| .|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D---~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFD---LVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEE---EEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCC---EEE
Confidence 68999999999999999999953 458999999999999999999966655 6799999999 333322 2355 577
Q ss_pred Eec
Q 019802 319 CIF 321 (335)
Q Consensus 319 lD~ 321 (335)
+..
T Consensus 76 ~~~ 78 (112)
T PF12847_consen 76 CSG 78 (112)
T ss_dssp ECS
T ss_pred ECC
Confidence 665
No 51
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.98 E-value=2e-09 Score=96.84 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=83.0
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 307 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~ 307 (335)
.+.+++....+....+|||+|||.|..++.+|.+..+ .+|+++|+++.+.+.+++|++-.++. +|++++.|+.++...
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 4788888888888999999999999999999998654 89999999999999999999987774 599999999998754
Q ss_pred CCCCceEEEEEEecccccccc
Q 019802 308 DPAYSEVSLIFCIFTWMIIMF 328 (335)
Q Consensus 308 ~~~fd~V~~IllD~~cs~~g~ 328 (335)
.. ++.+|.|+++||---.|.
T Consensus 111 ~~-~~~fD~Ii~NPPyf~~~~ 130 (248)
T COG4123 111 LV-FASFDLIICNPPYFKQGS 130 (248)
T ss_pred cc-ccccCEEEeCCCCCCCcc
Confidence 32 444556999999765554
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.96 E-value=5.2e-09 Score=90.89 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
+|.+|||+|||+|..+..++.. .+.++|+++|+++.+++.+++++++.|+.|++++++|+.++.. ..+||. |+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~---I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDV---ITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccE---EEeh
Confidence 4889999999999999999865 4568999999999999999999999999889999999998743 456875 5554
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.95 E-value=5.1e-09 Score=96.65 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=69.8
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
..+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++....|+.++.+..+|+.+++..+.+||.|
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEE
Confidence 456789999999999999888888887777899999999999999999999999989999999999988766678754
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.93 E-value=2.7e-09 Score=94.26 Aligned_cols=79 Identities=20% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC-CCCC--CCCCCCceEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLD--PKDPAYSEVSLI 317 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~-~~~~--~~~~~fd~V~~I 317 (335)
++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..++.|++++++|+ ..++ ..+.+||.|...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 678999999999999999998764 579999999999999999999999998999999999 6665 445678876544
Q ss_pred EEe
Q 019802 318 FCI 320 (335)
Q Consensus 318 llD 320 (335)
+.|
T Consensus 119 ~~~ 121 (202)
T PRK00121 119 FPD 121 (202)
T ss_pred CCC
Confidence 434
No 55
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.93 E-value=2e-09 Score=86.01 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC--CCCCCCceEEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD--PKDPAYSEVSLIF 318 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~--~~~~~fd~V~~Il 318 (335)
|.+|||+|||+|..+.++++.. ..+++++|+++..++.++.++...++ .+++++++|+.+.. ..+.. ++.|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGK---FDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT----EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCce---eEEEE
Confidence 6789999999999999999884 58999999999999999999999988 57999999998876 33444 55699
Q ss_pred Eecccccc
Q 019802 319 CIFTWMII 326 (335)
Q Consensus 319 lD~~cs~~ 326 (335)
+|||....
T Consensus 76 ~npP~~~~ 83 (117)
T PF13659_consen 76 TNPPYGPR 83 (117)
T ss_dssp E--STTSB
T ss_pred ECCCCccc
Confidence 99999864
No 56
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.93 E-value=8.2e-09 Score=95.98 Aligned_cols=84 Identities=17% Similarity=0.313 Sum_probs=69.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
+.++.+|||+|||+|..+..++...+ +.+|+++|+|+.+++.+++|+++.|+. +|.++++|+.+.. ...+|| .|
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-~~~~fD---~I 193 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-PGRKYD---LI 193 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-CCCCcc---EE
Confidence 34567999999999999999998754 579999999999999999999999985 6999999986532 233465 59
Q ss_pred EEeccccccc
Q 019802 318 FCIFTWMIIM 327 (335)
Q Consensus 318 llD~~cs~~g 327 (335)
++|||+...+
T Consensus 194 v~NPPy~~~~ 203 (284)
T TIGR03533 194 VSNPPYVDAE 203 (284)
T ss_pred EECCCCCCcc
Confidence 9999987544
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.91 E-value=7.6e-09 Score=94.81 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=74.3
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019802 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 306 (335)
Q Consensus 228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~ 306 (335)
..-..++..+.++||++|||+|||-|+.+..+|+.. +.+|+++++|++..+.++++++..|+. +|++...|-.++..
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 334566777889999999999999999999999986 479999999999999999999999997 89999999888765
Q ss_pred CCCCCceEEEE
Q 019802 307 KDPAYSEVSLI 317 (335)
Q Consensus 307 ~~~~fd~V~~I 317 (335)
. ||+|..|
T Consensus 137 ~---fDrIvSv 144 (283)
T COG2230 137 P---FDRIVSV 144 (283)
T ss_pred c---cceeeeh
Confidence 4 9987554
No 58
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.90 E-value=1e-08 Score=87.97 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=71.1
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd 312 (335)
++..+++.++++|||+|||+|..|.++++. .++++++|+++.+++.+++++.. ..+++++++|+.+++..+..||
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCC
Confidence 455677888999999999999999999987 36899999999999999999864 4579999999999887655566
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
. |+.|+|-.
T Consensus 80 ~---vi~n~Py~ 88 (169)
T smart00650 80 K---VVGNLPYN 88 (169)
T ss_pred E---EEECCCcc
Confidence 4 77888765
No 59
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.89 E-value=1.5e-08 Score=89.18 Aligned_cols=84 Identities=21% Similarity=0.129 Sum_probs=70.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~ 309 (335)
+..+...+...++.+|||+|||+|..+.++++. ..+|+++|+|+.+++.++++++..++.++++.+.|+.++++. .
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-C
Confidence 344555667778899999999999999999975 368999999999999999999999998899999999887654 4
Q ss_pred CCceEEEE
Q 019802 310 AYSEVSLI 317 (335)
Q Consensus 310 ~fd~V~~I 317 (335)
.||.|.+.
T Consensus 95 ~fD~I~~~ 102 (197)
T PRK11207 95 EYDFILST 102 (197)
T ss_pred CcCEEEEe
Confidence 58875443
No 60
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.89 E-value=1.7e-08 Score=87.97 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=72.0
Q ss_pred ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (335)
Q Consensus 225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~ 304 (335)
.++.....+...+++.++.+|||+|||+|..+..++... ++++|+++|+++.+++.+++|+++.++.+++++++|+..
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~- 92 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI- 92 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-
Confidence 344444555667788899999999999999999999874 458999999999999999999999998889999998853
Q ss_pred CCCCCCCceEEEEEEe
Q 019802 305 DPKDPAYSEVSLIFCI 320 (335)
Q Consensus 305 ~~~~~~fd~V~~IllD 320 (335)
.. ...||. |+++
T Consensus 93 ~~-~~~~D~---v~~~ 104 (187)
T PRK08287 93 EL-PGKADA---IFIG 104 (187)
T ss_pred hc-CcCCCE---EEEC
Confidence 22 235775 5554
No 61
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.88 E-value=5.5e-09 Score=102.76 Aligned_cols=86 Identities=24% Similarity=0.239 Sum_probs=72.2
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC----CCC
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP----KDP 309 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~----~~~ 309 (335)
...+.+.++++|||+|||+|..+..++... .+|+++|+++.+++.+++|++..|++|++++++|+.+..+ .+.
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCC
Confidence 334567788999999999999999999863 5899999999999999999999999999999999976321 233
Q ss_pred CCceEEEEEEeccccc
Q 019802 310 AYSEVSLIFCIFTWMI 325 (335)
Q Consensus 310 ~fd~V~~IllD~~cs~ 325 (335)
+|| .|++|||..|
T Consensus 362 ~~D---~vi~dPPr~G 374 (431)
T TIGR00479 362 IPD---VLLLDPPRKG 374 (431)
T ss_pred CCC---EEEECcCCCC
Confidence 566 5899999876
No 62
>PLN02244 tocopherol O-methyltransferase
Probab=98.88 E-value=1.4e-08 Score=96.81 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSL 316 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~ 316 (335)
.++.+|||+|||+|+.+.++++.. ..+|+++|+|+.+++.++++++..|+. +++++++|+.++++.+++||.|.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence 678999999999999999999875 469999999999999999999988874 699999999999888888997643
No 63
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.88 E-value=9.3e-09 Score=90.53 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIF 318 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~Il 318 (335)
.++.+|||+|||+|..+..++... ..+|+++|+++..++.+++|++.+|+.+++++++|+.+... ....|| .|+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD---lV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN---VVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce---EEE
Confidence 568899999999999998655542 46999999999999999999999999899999999976432 223454 699
Q ss_pred Eeccc
Q 019802 319 CIFTW 323 (335)
Q Consensus 319 lD~~c 323 (335)
+|||-
T Consensus 127 ~DPPy 131 (199)
T PRK10909 127 VDPPF 131 (199)
T ss_pred ECCCC
Confidence 99994
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.87 E-value=1.5e-08 Score=87.60 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=73.1
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
...+.++...+...++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++|++..++ +++++++|+.+...
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVR 80 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccC
Confidence 3445677777777788999999999999999998862 2899999999999999999998887 68999999876542
Q ss_pred CCCCCceEEEEEEecccc
Q 019802 307 KDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 307 ~~~~fd~V~~IllD~~cs 324 (335)
.+|| .|++++|+.
T Consensus 81 --~~fD---~Vi~n~p~~ 93 (179)
T TIGR00537 81 --GKFD---VILFNPPYL 93 (179)
T ss_pred --Cccc---EEEECCCCC
Confidence 3576 488998874
No 65
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.86 E-value=1.7e-08 Score=91.63 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
.+.+|||+|||+|..+..++...+ ...++++|+++.+++.++++++..|+.++.++++|+.+. ....+|| .|++|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD---~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-LPGGKFD---LIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-CcCCcee---EEEEC
Confidence 456899999999999999998754 469999999999999999999999998899999999763 2334455 59999
Q ss_pred cccccccc
Q 019802 321 FTWMIIMF 328 (335)
Q Consensus 321 ~~cs~~g~ 328 (335)
||+...+.
T Consensus 162 pPy~~~~~ 169 (251)
T TIGR03534 162 PPYIPEAD 169 (251)
T ss_pred CCCCchhh
Confidence 99987553
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=98.86 E-value=1.7e-08 Score=90.50 Aligned_cols=88 Identities=26% Similarity=0.492 Sum_probs=69.3
Q ss_pred HHHHHHHc---CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 230 SSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 230 s~l~~~~l---~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
++++...+ ...++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|++..|. ++.++++|+.+..
T Consensus 22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~- 97 (223)
T PRK14967 22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAV- 97 (223)
T ss_pred HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhc-
Confidence 34444433 4678899999999999999998875 335999999999999999999999887 5889999987643
Q ss_pred CCCCCceEEEEEEecccc
Q 019802 307 KDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 307 ~~~~fd~V~~IllD~~cs 324 (335)
.+..|| .|++|+|..
T Consensus 98 ~~~~fD---~Vi~npPy~ 112 (223)
T PRK14967 98 EFRPFD---VVVSNPPYV 112 (223)
T ss_pred cCCCee---EEEECCCCC
Confidence 334566 588997643
No 67
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.85 E-value=2e-08 Score=87.13 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=69.3
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCe--------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe
Q 019802 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG--------KIVACELNKERVRRLKDTIKLSGAAN-IEVLH 298 (335)
Q Consensus 228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g--------~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~ 298 (335)
.-+..+..+.++++|+.|||-+||+|+..+..+....+.. +++++|+++++++.+++|++..|+.. |.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3455666778899999999999999999988876654433 49999999999999999999999864 89999
Q ss_pred ccCCCCCCCCCCCceEEEEEEecccc
Q 019802 299 GDFLNLDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 299 ~D~~~~~~~~~~fd~V~~IllD~~cs 324 (335)
.|+.+++..+.++| .|+.|||.-
T Consensus 95 ~D~~~l~~~~~~~d---~IvtnPPyG 117 (179)
T PF01170_consen 95 WDARELPLPDGSVD---AIVTNPPYG 117 (179)
T ss_dssp --GGGGGGTTSBSC---EEEEE--ST
T ss_pred cchhhcccccCCCC---EEEECcchh
Confidence 99999995555566 599999974
No 68
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.85 E-value=4.7e-09 Score=82.03 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=57.8
Q ss_pred EEEEcCCCchHHHHHHHHc--CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802 245 VLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 245 VLD~cagpG~kt~~la~~~--~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
|||+|||+|..+..++... ++..+++++|+|+.+++.++++....+. +++++++|+.++++.+++||.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEE
Confidence 7999999999999999987 2337999999999999999999999888 7999999999998777778863
No 69
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.83 E-value=2.8e-08 Score=93.40 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|+++.|+. +|+++++|+.+..+ ..+|| .|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-~~~fD---lIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-GRRYD---LIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC-CCCcc---EEEEC
Confidence 3689999999999999999875 4579999999999999999999999985 59999999865332 23566 59999
Q ss_pred ccccccc
Q 019802 321 FTWMIIM 327 (335)
Q Consensus 321 ~~cs~~g 327 (335)
||+.+.+
T Consensus 209 PPyi~~~ 215 (307)
T PRK11805 209 PPYVDAE 215 (307)
T ss_pred CCCCCcc
Confidence 9998754
No 70
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.5e-08 Score=84.59 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=70.8
Q ss_pred CchHHHH--HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802 227 GKASSMV--AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (335)
Q Consensus 227 d~~s~l~--~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~ 304 (335)
+.++.++ +++.+.-.|..|+|+|||+|..++..+-+ +..+|+|+|++++.++.+++|+++++ .+|.+++.|+.++
T Consensus 29 ~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~ 105 (198)
T COG2263 29 PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF 105 (198)
T ss_pred HHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhc
Confidence 4444443 33445567889999999999999987765 35799999999999999999999944 4799999999988
Q ss_pred CCCCCCCceEEEEEEecccc
Q 019802 305 DPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 305 ~~~~~~fd~V~~IllD~~cs 324 (335)
... || .++.|||.-
T Consensus 106 ~~~---~d---tvimNPPFG 119 (198)
T COG2263 106 RGK---FD---TVIMNPPFG 119 (198)
T ss_pred CCc---cc---eEEECCCCc
Confidence 743 55 588899864
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.82 E-value=3.1e-08 Score=95.24 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=75.9
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLN 303 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---~ni~~~~~D~~~ 303 (335)
|.++.+....+....+.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++|++..+. .++++...|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 7788888888876667899999999999999999884 568999999999999999999988764 368889888854
Q ss_pred CCCCCCCCceEEEEEEecccc
Q 019802 304 LDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 304 ~~~~~~~fd~V~~IllD~~cs 324 (335)
.. ...+|| .|+++||.-
T Consensus 293 ~~-~~~~fD---lIlsNPPfh 309 (378)
T PRK15001 293 GV-EPFRFN---AVLCNPPFH 309 (378)
T ss_pred cC-CCCCEE---EEEECcCcc
Confidence 32 223455 699999864
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.81 E-value=1.7e-08 Score=93.24 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD 308 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~ 308 (335)
-..+...++++||++|||+|||-|+.+.++++.. +.+|+++.+|+...+.+++.+++.|+.+ +++...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--
Confidence 3466677889999999999999999999999986 3799999999999999999999999964 9999999988765
Q ss_pred CCCceEEEE
Q 019802 309 PAYSEVSLI 317 (335)
Q Consensus 309 ~~fd~V~~I 317 (335)
+||+|..|
T Consensus 127 -~fD~IvSi 134 (273)
T PF02353_consen 127 -KFDRIVSI 134 (273)
T ss_dssp -S-SEEEEE
T ss_pred -CCCEEEEE
Confidence 69997666
No 73
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.81 E-value=2.2e-08 Score=91.45 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIF 321 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~ 321 (335)
+.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|++..|. +++++|+.+...... -..+|.|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~-~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTAL-RGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhc-CCCEeEEEECC
Confidence 45899999999999999998754 36899999999999999999998763 688899876432110 12345799999
Q ss_pred ccccccc
Q 019802 322 TWMIIMF 328 (335)
Q Consensus 322 ~cs~~g~ 328 (335)
||..++.
T Consensus 162 Py~~~~~ 168 (251)
T TIGR03704 162 PYVPTDA 168 (251)
T ss_pred CCCCchh
Confidence 9987654
No 74
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.2e-08 Score=99.65 Aligned_cols=90 Identities=20% Similarity=0.160 Sum_probs=78.2
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--- 308 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~--- 308 (335)
.+...++..++++|||+-||.|++|.+||.. ..+|+++|+++..++.+++|++..|+.|+.+..+|++++....
T Consensus 284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 3444666778999999999999999999965 4689999999999999999999999999999999999987654
Q ss_pred CCCceEEEEEEeccccccc
Q 019802 309 PAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 309 ~~fd~V~~IllD~~cs~~g 327 (335)
..+| .|++|||=+|.+
T Consensus 361 ~~~d---~VvvDPPR~G~~ 376 (432)
T COG2265 361 YKPD---VVVVDPPRAGAD 376 (432)
T ss_pred CCCC---EEEECCCCCCCC
Confidence 3455 599999998876
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=4.3e-08 Score=90.18 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=77.5
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
|..|++....+....+.+|||+|||.|-.++.+++.. +..+|+-+|+|...++.+++|++..++++..+...|..+--
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 8899999999998888899999999999999999985 47899999999999999999999999988655555553322
Q ss_pred CCCCCceEEEEEEecccc
Q 019802 307 KDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 307 ~~~~fd~V~~IllD~~cs 324 (335)
.+ +||. |+++||--
T Consensus 222 ~~-kfd~---IisNPPfh 235 (300)
T COG2813 222 EG-KFDL---IISNPPFH 235 (300)
T ss_pred cc-cccE---EEeCCCcc
Confidence 22 5775 99999854
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.79 E-value=1.7e-08 Score=88.60 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCceEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVSLI 317 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~---~~~~fd~V~~I 317 (335)
...+|||+|||+|..+..++... +++.++++|+++.+++.+++++++.|+.|++++++|+.++.. .+.++ +.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~---d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSL---SKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCce---eEE
Confidence 45699999999999999999875 568999999999999999999999999999999999987542 22344 457
Q ss_pred EEecc
Q 019802 318 FCIFT 322 (335)
Q Consensus 318 llD~~ 322 (335)
++++|
T Consensus 92 ~~~~p 96 (194)
T TIGR00091 92 FLNFP 96 (194)
T ss_pred EEECC
Confidence 77764
No 77
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.78 E-value=1.1e-08 Score=97.84 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=62.5
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DP 309 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~---~~ 309 (335)
+...+++.++ .|||++||.|..|..+|.. ..+|+|+|+++..++.+++|++..|++|++++++++.++... ..
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence 3445666666 8999999999999999876 368999999999999999999999999999999887654321 00
Q ss_pred CC----------ceEEEEEEeccccccc
Q 019802 310 AY----------SEVSLIFCIFTWMIIM 327 (335)
Q Consensus 310 ~f----------d~V~~IllD~~cs~~g 327 (335)
.| ..++.|++|||=+|.+
T Consensus 265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 01 1356799999998865
No 78
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.78 E-value=2.1e-08 Score=96.82 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=69.0
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceEE
Q 019802 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVS 315 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V~ 315 (335)
++..++.+|||+|||.|..+..++.. ..+|+++|+++..++.+++|++..|++|++++++|+.++... ...||
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D--- 302 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPE--- 302 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCC---
Confidence 34456789999999999999999864 368999999999999999999999999999999999775432 13465
Q ss_pred EEEEeccccc
Q 019802 316 LIFCIFTWMI 325 (335)
Q Consensus 316 ~IllD~~cs~ 325 (335)
.|++|||-.|
T Consensus 303 ~vi~DPPr~G 312 (374)
T TIGR02085 303 LVLVNPPRRG 312 (374)
T ss_pred EEEECCCCCC
Confidence 5999999753
No 79
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.77 E-value=5.8e-08 Score=93.81 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=71.6
Q ss_pred HHHHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CC
Q 019802 231 SMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KD 308 (335)
Q Consensus 231 ~l~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~ 308 (335)
.++..++. ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|+++.|. +++++++|+.+... ..
T Consensus 240 ~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 240 HLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSE 317 (423)
T ss_pred HHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccC
Confidence 34443333 3467799999999999999988764 457999999999999999999999887 79999999866432 22
Q ss_pred CCCceEEEEEEeccccccc
Q 019802 309 PAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 309 ~~fd~V~~IllD~~cs~~g 327 (335)
..|| .|++|||-..++
T Consensus 318 ~~FD---LIVSNPPYI~~~ 333 (423)
T PRK14966 318 GKWD---IIVSNPPYIENG 333 (423)
T ss_pred CCcc---EEEECCCCCCcc
Confidence 3455 599999986544
No 80
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=6.9e-08 Score=86.82 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=80.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~ 308 (335)
..++...|+..||.+|++.|+|.|+.+..++..+++.|+++.+|+++.|.+.+.+.+++.|+ +|+.+.+-|....-+..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 44677889999999999999999999999999999999999999999999999999999998 57999999987766543
Q ss_pred CCCceEEEEEEeccc
Q 019802 309 PAYSEVSLIFCIFTW 323 (335)
Q Consensus 309 ~~fd~V~~IllD~~c 323 (335)
. --.+|+|+||.|-
T Consensus 174 k-s~~aDaVFLDlPa 187 (314)
T KOG2915|consen 174 K-SLKADAVFLDLPA 187 (314)
T ss_pred c-ccccceEEEcCCC
Confidence 2 1245679999664
No 81
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.75 E-value=2.9e-08 Score=92.36 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=77.3
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPA 310 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~ 310 (335)
+...|.+++|+.++|+.+|-||.|..|++.+++ |+|+|+|.++..++.++++++..+ .+++++++++.++... ...
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcC
Confidence 345677899999999999999999999998865 999999999999999999998764 4699999999887632 223
Q ss_pred CceEEEEEEecccccc
Q 019802 311 YSEVSLIFCIFTWMII 326 (335)
Q Consensus 311 fd~V~~IllD~~cs~~ 326 (335)
.+.||+|++|.++|..
T Consensus 90 ~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 90 VTKIDGILVDLGVSSP 105 (305)
T ss_pred CCcccEEEEeccCCHh
Confidence 4568889999999964
No 82
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.75 E-value=3e-08 Score=89.59 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=75.2
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC-
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP- 306 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~- 306 (335)
..+++..++...++.+|||+|||.|.-+..++..++++|+|+++|+++++++.+++|+++.|+. +|+++.+|+.+.-+
T Consensus 56 ~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 56 EGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 3555666666677889999999999999999998888899999999999999999999999985 59999999977421
Q ss_pred -----CCCCCceEEEEEEec
Q 019802 307 -----KDPAYSEVSLIFCIF 321 (335)
Q Consensus 307 -----~~~~fd~V~~IllD~ 321 (335)
...+||. ||+|.
T Consensus 136 l~~~~~~~~fD~---VfiDa 152 (234)
T PLN02781 136 LLNNDPKPEFDF---AFVDA 152 (234)
T ss_pred HHhCCCCCCCCE---EEECC
Confidence 1346875 78885
No 83
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.75 E-value=4.6e-08 Score=93.82 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=70.0
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCce
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSE 313 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~ 313 (335)
.+....+..+||+|||+|..+.++|... ++..++|+|+++.+++.+.+++.+.|++||.++++|+..+. ..++++|.
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeE
Confidence 3455667899999999999999999985 56899999999999999999999999999999999997652 34455655
Q ss_pred EEEEEEeccc
Q 019802 314 VSLIFCIFTW 323 (335)
Q Consensus 314 V~~IllD~~c 323 (335)
|++.+|+
T Consensus 196 ---I~lnFPd 202 (390)
T PRK14121 196 ---IFVHFPV 202 (390)
T ss_pred ---EEEeCCC
Confidence 6666654
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.74 E-value=1e-07 Score=87.88 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
...++.+|||+|||+|..+..++... +..+++++|+++.+++.+++|++.....++.++++|+..... ..+|| .|
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-~~~fD---~I 179 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-GGRFD---LI 179 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-CCcee---EE
Confidence 45678899999999999999999886 458999999999999999999984444579999999865432 33455 59
Q ss_pred EEecccccccc
Q 019802 318 FCIFTWMIIMF 328 (335)
Q Consensus 318 llD~~cs~~g~ 328 (335)
+++||+...+.
T Consensus 180 v~npPy~~~~~ 190 (275)
T PRK09328 180 VSNPPYIPEAD 190 (275)
T ss_pred EECCCcCCcch
Confidence 99999987654
No 85
>PLN02476 O-methyltransferase
Probab=98.74 E-value=2.9e-08 Score=91.32 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=80.9
Q ss_pred EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019802 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 302 (335)
Q Consensus 224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~ 302 (335)
.+.....++...++...+..+|||+|++.|..|.+++..++++|+|+++|.++++.+.+++|+++.|+. +|+++.+|+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 444556677777777778899999999999999999999988899999999999999999999999996 6999999997
Q ss_pred CCCC------CCCCCceEEEEEEecc
Q 019802 303 NLDP------KDPAYSEVSLIFCIFT 322 (335)
Q Consensus 303 ~~~~------~~~~fd~V~~IllD~~ 322 (335)
+.-+ ...+||. ||+|+.
T Consensus 181 e~L~~l~~~~~~~~FD~---VFIDa~ 203 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDF---AFVDAD 203 (278)
T ss_pred HHHHHHHhcccCCCCCE---EEECCC
Confidence 7432 1246775 999976
No 86
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.74 E-value=2e-08 Score=104.32 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=84.1
Q ss_pred CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (335)
Q Consensus 215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-- 292 (335)
..+.+.|.|.-|...-.++.... +|.+|||+|||+|+.+.+++.. +..+|+++|+|+.+++.+++|++..|+.
T Consensus 515 ~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~ 589 (702)
T PRK11783 515 TDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGR 589 (702)
T ss_pred CCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 34567888888877777766554 4889999999999999999874 3457999999999999999999999985
Q ss_pred cEEEEeccCCCCCC-CCCCCceEEEEEEecccccc
Q 019802 293 NIEVLHGDFLNLDP-KDPAYSEVSLIFCIFTWMII 326 (335)
Q Consensus 293 ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~cs~~ 326 (335)
+++++++|+.++.. ....||. |++|||.-+.
T Consensus 590 ~v~~i~~D~~~~l~~~~~~fDl---IilDPP~f~~ 621 (702)
T PRK11783 590 QHRLIQADCLAWLKEAREQFDL---IFIDPPTFSN 621 (702)
T ss_pred ceEEEEccHHHHHHHcCCCcCE---EEECCCCCCC
Confidence 69999999876431 1345774 9999998654
No 87
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.74 E-value=7.8e-08 Score=89.46 Aligned_cols=80 Identities=10% Similarity=0.186 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
+.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|+++.++.+ +.++++|+.+.. ....|| .|+.|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~-~~~~fD---lIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL-AGQKID---IIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-cCCCcc---EEEEC
Confidence 36999999999999999998754 4799999999999999999999999865 999999987632 222466 58999
Q ss_pred cccccc
Q 019802 321 FTWMII 326 (335)
Q Consensus 321 ~~cs~~ 326 (335)
||.-..
T Consensus 190 PPyi~~ 195 (284)
T TIGR00536 190 PPYIDE 195 (284)
T ss_pred CCCCCc
Confidence 998754
No 88
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=7.6e-08 Score=89.23 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=64.2
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEeccc
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTW 323 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~c 323 (335)
+|||+|||+|..++.++... +...|+|+|+|+..++.+++|++++|+.++.++..|....-.. .|| .|+++||.
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~--~fD---lIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG--KFD---LIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC--cee---EEEeCCCC
Confidence 79999999999999999875 4579999999999999999999999987777777775443322 465 59999998
Q ss_pred cccc
Q 019802 324 MIIM 327 (335)
Q Consensus 324 s~~g 327 (335)
-..-
T Consensus 187 ip~~ 190 (280)
T COG2890 187 IPAE 190 (280)
T ss_pred CCCc
Confidence 6543
No 89
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.72 E-value=6.9e-08 Score=90.07 Aligned_cols=96 Identities=25% Similarity=0.313 Sum_probs=77.8
Q ss_pred EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccC
Q 019802 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDF 301 (335)
Q Consensus 223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~ 301 (335)
|.++..-...++..+++.+++.|||+|||+|..|..+++. ..+|+|+|+|+.+++.+++++...+ ..+++++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3344444556677778889999999999999999999886 3579999999999999999998877 46899999999
Q ss_pred CCCCCCCCCCceEEEEEEecccccc
Q 019802 302 LNLDPKDPAYSEVSLIFCIFTWMII 326 (335)
Q Consensus 302 ~~~~~~~~~fd~V~~IllD~~cs~~ 326 (335)
.+.+.. .|| .|+.++|...+
T Consensus 95 l~~~~~--~~d---~VvaNlPY~Is 114 (294)
T PTZ00338 95 LKTEFP--YFD---VCVANVPYQIS 114 (294)
T ss_pred hhhccc--ccC---EEEecCCcccC
Confidence 886643 465 57788887644
No 90
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.72 E-value=5.2e-08 Score=90.08 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=72.0
Q ss_pred ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (335)
Q Consensus 225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~ 304 (335)
++..-...+...+++.++++|||+|||+|..|..+++.. .+|+|+|+++.+++.+++++.. ++++++++|+.++
T Consensus 26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~ 99 (272)
T PRK00274 26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKV 99 (272)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcC
Confidence 333334455667788899999999999999999999883 3899999999999999988753 5899999999998
Q ss_pred CCCCCCCceEEEEEEeccccc
Q 019802 305 DPKDPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 305 ~~~~~~fd~V~~IllD~~cs~ 325 (335)
+..+-. .+.|+.++|..-
T Consensus 100 ~~~~~~---~~~vv~NlPY~i 117 (272)
T PRK00274 100 DLSELQ---PLKVVANLPYNI 117 (272)
T ss_pred CHHHcC---cceEEEeCCccc
Confidence 754311 245777888653
No 91
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.71 E-value=7.8e-08 Score=84.49 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=65.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~ 309 (335)
+..+...+...++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++++..|+. +.+...|....+.. +
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~-~ 93 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN-E 93 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc-C
Confidence 334445666667789999999999999999975 369999999999999999999888884 78888888765543 4
Q ss_pred CCceEE
Q 019802 310 AYSEVS 315 (335)
Q Consensus 310 ~fd~V~ 315 (335)
+||.|.
T Consensus 94 ~fD~I~ 99 (195)
T TIGR00477 94 DYDFIF 99 (195)
T ss_pred CCCEEE
Confidence 688653
No 92
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.70 E-value=4.5e-08 Score=93.75 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---------C---
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---------P--- 309 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~---------~--- 309 (335)
+++|||+|||+|..+..++... .+|+++|+++.+++.+++|++..|+.|++++++|+.++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3479999999999999998774 489999999999999999999999999999999997743210 0
Q ss_pred --CCceEEEEEEeccccccccc
Q 019802 310 --AYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 310 --~fd~V~~IllD~~cs~~g~~ 329 (335)
.+ ..+.|++|||= .|.+
T Consensus 275 ~~~~-~~d~v~lDPPR--~G~~ 293 (353)
T TIGR02143 275 LKSY-NCSTIFVDPPR--AGLD 293 (353)
T ss_pred cccC-CCCEEEECCCC--CCCc
Confidence 11 13569999994 4543
No 93
>PRK08317 hypothetical protein; Provisional
Probab=98.70 E-value=1.8e-07 Score=83.69 Aligned_cols=81 Identities=27% Similarity=0.359 Sum_probs=67.8
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~ 313 (335)
...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++... ...++.+...|+..++.....||.
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~ 90 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGSFDA 90 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCCceE
Confidence 4567788899999999999999999999886678999999999999999988433 335799999999887776677886
Q ss_pred EE
Q 019802 314 VS 315 (335)
Q Consensus 314 V~ 315 (335)
|.
T Consensus 91 v~ 92 (241)
T PRK08317 91 VR 92 (241)
T ss_pred EE
Confidence 54
No 94
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.70 E-value=7e-08 Score=87.94 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V 314 (335)
+.++.+|||+|||+|..+..+++.+ .+.++|+++|+|+.|++.+++++++.+.. +++++++|+.+++.. .+|.|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEE
Confidence 3578899999999999999998864 45689999999999999999999998875 699999999887754 36653
No 95
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.69 E-value=7e-08 Score=84.86 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
.++|+.|+|++||-|..++.+|.. .....|+|+|+++..++.+++|++..++++ |.++++|+.++.. ...||. |
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~dr---v 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDR---V 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEE---E
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCE---E
Confidence 578999999999999999999985 345789999999999999999999999976 8899999999876 555664 8
Q ss_pred EEeccccccc
Q 019802 318 FCIFTWMIIM 327 (335)
Q Consensus 318 llD~~cs~~g 327 (335)
+++.|-+..-
T Consensus 174 im~lp~~~~~ 183 (200)
T PF02475_consen 174 IMNLPESSLE 183 (200)
T ss_dssp EE--TSSGGG
T ss_pred EECChHHHHH
Confidence 8888766543
No 96
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.69 E-value=1e-07 Score=87.50 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=74.9
Q ss_pred EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
|.+.......++..++..+++.|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. ..+++++++|+.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~ 85 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL 85 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence 4444445566677778889999999999999999999987 35899999999999999998865 468999999999
Q ss_pred CCCCCCCCCceEEEEEEeccccc
Q 019802 303 NLDPKDPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 303 ~~~~~~~~fd~V~~IllD~~cs~ 325 (335)
+++.. .|| .|+.++|...
T Consensus 86 ~~~~~--~~d---~Vv~NlPy~i 103 (258)
T PRK14896 86 KVDLP--EFN---KVVSNLPYQI 103 (258)
T ss_pred cCCch--hce---EEEEcCCccc
Confidence 87643 354 5777877653
No 97
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.69 E-value=7e-08 Score=85.64 Aligned_cols=93 Identities=18% Similarity=0.326 Sum_probs=78.8
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe-ccCCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH-GDFLNL 304 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~-~D~~~~ 304 (335)
....+++..++......+||++|++.|.-|++||.-++.+|+|+++|+++++.+.+++|+++.|+.+ |+++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 4556677777778889999999999999999999999878999999999999999999999999977 77888 588765
Q ss_pred CCC--CCCCceEEEEEEecc
Q 019802 305 DPK--DPAYSEVSLIFCIFT 322 (335)
Q Consensus 305 ~~~--~~~fd~V~~IllD~~ 322 (335)
-.. .++||. ||+|.-
T Consensus 125 l~~~~~~~fDl---iFIDad 141 (219)
T COG4122 125 LSRLLDGSFDL---VFIDAD 141 (219)
T ss_pred HHhccCCCccE---EEEeCC
Confidence 432 466775 899853
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=98.69 E-value=1.7e-07 Score=81.11 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=71.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPK 307 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~~~~ 307 (335)
+.++...+...++.+|||+|||.|..+..++.. ..+|+++|+++.+++.+++++...++.+ +.++++|..+...
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~- 87 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR- 87 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-
Confidence 455555666678999999999999999999987 4799999999999999999999988866 8899999866432
Q ss_pred CCCCceEEEEEEeccccc
Q 019802 308 DPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 308 ~~~fd~V~~IllD~~cs~ 325 (335)
...|| .|++++|...
T Consensus 88 ~~~~d---~vi~n~p~~~ 102 (188)
T PRK14968 88 GDKFD---VILFNPPYLP 102 (188)
T ss_pred ccCce---EEEECCCcCC
Confidence 23455 5788888654
No 99
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.68 E-value=7.4e-08 Score=84.00 Aligned_cols=78 Identities=26% Similarity=0.348 Sum_probs=59.0
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--------CC
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--------PK 307 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--------~~ 307 (335)
...+++|++|||+|||||+.+.+++..+.+.++|+++|+++.+ +..++.++++|+.+.+ ..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 4456789999999999999999999987667899999999865 2356888999987643 12
Q ss_pred CCCCceEEEEEEeccccccc
Q 019802 308 DPAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 308 ~~~fd~V~~IllD~~cs~~g 327 (335)
.++|| .|++|+++...|
T Consensus 96 ~~~~D---~V~~~~~~~~~g 112 (188)
T TIGR00438 96 DDKVD---VVMSDAAPNISG 112 (188)
T ss_pred CCCcc---EEEcCCCCCCCC
Confidence 33455 588886543333
No 100
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.68 E-value=6.5e-08 Score=90.65 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=85.8
Q ss_pred CCCCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (335)
Q Consensus 212 ~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~ 291 (335)
...-|.|..|. +--.-|...+.+..+++|+.|||=.||+||......- | +.+++++|++.+|++.++.|++.+|+
T Consensus 170 ~~kRPf~~p~s--~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i 244 (347)
T COG1041 170 PEKRPFFRPGS--MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGI 244 (347)
T ss_pred cccCCccCcCC--cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCc
Confidence 34445555542 3334577778888899999999999999999887764 4 37999999999999999999999999
Q ss_pred CcEEEEec-cCCCCCCCCCCCceEEEEEEecccccc
Q 019802 292 ANIEVLHG-DFLNLDPKDPAYSEVSLIFCIFTWMII 326 (335)
Q Consensus 292 ~ni~~~~~-D~~~~~~~~~~fd~V~~IllD~~cs~~ 326 (335)
....+... |+++++..+++| ++|.+|||.-.+
T Consensus 245 ~~~~~~~~~Da~~lpl~~~~v---daIatDPPYGrs 277 (347)
T COG1041 245 EDYPVLKVLDATNLPLRDNSV---DAIATDPPYGRS 277 (347)
T ss_pred CceeEEEecccccCCCCCCcc---ceEEecCCCCcc
Confidence 88777666 999999766644 569999997644
No 101
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.68 E-value=4.7e-08 Score=89.11 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=68.2
Q ss_pred EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
.+|...+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++.. .+.++++|+..
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~ 96 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence 367777777777777667889999999999999988764 3689999999999999988743 34678999999
Q ss_pred CCCCCCCCceE
Q 019802 304 LDPKDPAYSEV 314 (335)
Q Consensus 304 ~~~~~~~fd~V 314 (335)
++..+++||.|
T Consensus 97 ~~~~~~~fD~V 107 (251)
T PRK10258 97 LPLATATFDLA 107 (251)
T ss_pred CcCCCCcEEEE
Confidence 88777778864
No 102
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.68 E-value=1.2e-07 Score=87.24 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=72.9
Q ss_pred cccceEEecCc-hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019802 218 IVNGCVFLQGK-ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296 (335)
Q Consensus 218 ~~~g~~~iQd~-~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~ 296 (335)
|-.|++..... ....+...+.+.++.+|||+|||+|+.+..++... .++|+++|+++.+++.+++++.. ..++.+
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~ 103 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEF 103 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEE
Confidence 33444444322 23444556788899999999999999999998763 46999999999999999998764 346999
Q ss_pred EeccCCCCCCCCCCCceEEE
Q 019802 297 LHGDFLNLDPKDPAYSEVSL 316 (335)
Q Consensus 297 ~~~D~~~~~~~~~~fd~V~~ 316 (335)
.++|+...+..+.+||.|.+
T Consensus 104 ~~~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 104 EANDILKKDFPENTFDMIYS 123 (263)
T ss_pred EECCcccCCCCCCCeEEEEE
Confidence 99999988777778987543
No 103
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.67 E-value=1.8e-07 Score=89.19 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
|..+.+....+.....++|||+|||+|..+..++.+. +..+|+++|+|+.+++.+++|+++.++. .+++..|+...
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-- 257 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-- 257 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc--
Confidence 6677777777766666799999999999999999874 4578999999999999999999998875 56778887553
Q ss_pred CCCCCceEEEEEEecc
Q 019802 307 KDPAYSEVSLIFCIFT 322 (335)
Q Consensus 307 ~~~~fd~V~~IllD~~ 322 (335)
..+.||. |+++||
T Consensus 258 ~~~~fDl---IvsNPP 270 (342)
T PRK09489 258 IKGRFDM---IISNPP 270 (342)
T ss_pred cCCCccE---EEECCC
Confidence 2345764 888887
No 104
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.66 E-value=7.5e-08 Score=92.58 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--------------
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------------- 307 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------------- 307 (335)
+.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++..|++|++++++|+.+.-..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 48999999999999999999999999999999999774211
Q ss_pred --CCCCceEEEEEEeccccccccc
Q 019802 308 --DPAYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 308 --~~~fd~V~~IllD~~cs~~g~~ 329 (335)
...|| .|++|||-+ |++
T Consensus 284 ~~~~~~D---~v~lDPPR~--G~~ 302 (362)
T PRK05031 284 LKSYNFS---TIFVDPPRA--GLD 302 (362)
T ss_pred ccCCCCC---EEEECCCCC--CCc
Confidence 11244 699999964 544
No 105
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.65 E-value=7.3e-08 Score=84.29 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC---CCCCCceEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP---KDPAYSEVSL 316 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~---~~~~fd~V~~ 316 (335)
.|.+|||+|||+|..++.++.+ +...|+++|.++..++.+++|++..++. +++++++|+.+.-. ....+ .+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~--~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTF--DNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCC--ceE
Confidence 5889999999999999999887 2358999999999999999999999986 68999999955321 11222 246
Q ss_pred EEEeccccc
Q 019802 317 IFCIFTWMI 325 (335)
Q Consensus 317 IllD~~cs~ 325 (335)
|++|||-..
T Consensus 125 v~~DPPy~~ 133 (189)
T TIGR00095 125 IYLDPPFFN 133 (189)
T ss_pred EEECcCCCC
Confidence 999999854
No 106
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.64 E-value=9.9e-08 Score=90.06 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEE
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSL 316 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~ 316 (335)
.+.+|.+|||+|||+|..+..++.. .++|+++|+++++++.+++++...+. .+|+++++|+.+++..+.+||.|.+
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence 3567889999999999999988864 46899999999999999988766544 4799999999998877778998654
No 107
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.64 E-value=1.4e-07 Score=86.30 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=60.9
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd 312 (335)
+...+.+.++.+|||+|||+|..+..++... +.++|+++|+|+.+++.++++ ++.++++|+.++. .+++||
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-CCCCce
Confidence 3445677889999999999999999999886 457999999999999998763 4788999998875 345788
Q ss_pred eEEE
Q 019802 313 EVSL 316 (335)
Q Consensus 313 ~V~~ 316 (335)
.|.+
T Consensus 92 ~v~~ 95 (255)
T PRK14103 92 VVVS 95 (255)
T ss_pred EEEE
Confidence 6433
No 108
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.63 E-value=4.4e-08 Score=85.17 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC----CCCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP----KDPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~----~~~~fd~V 314 (335)
-+|.+|||+|||+|..++..+.+ +..+|+.+|.+...++.+++|++.+++.+ +.+++.|+...-. ....||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fD-- 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFD-- 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EE--
T ss_pred cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCce--
Confidence 37999999999999999988776 45799999999999999999999999976 8999999754321 234455
Q ss_pred EEEEEeccccc
Q 019802 315 SLIFCIFTWMI 325 (335)
Q Consensus 315 ~~IllD~~cs~ 325 (335)
.|++|||.--
T Consensus 117 -iIflDPPY~~ 126 (183)
T PF03602_consen 117 -IIFLDPPYAK 126 (183)
T ss_dssp -EEEE--STTS
T ss_pred -EEEECCCccc
Confidence 5999999753
No 109
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.62 E-value=9.1e-08 Score=72.80 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=53.4
Q ss_pred EEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 246 LD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
||+|||+|..+..+++. +..+|+++|+++.+++.++++....+ +.+.++|+.++++.+++||.|
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~~sfD~v 64 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLPFPDNSFDVV 64 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSSS-TT-EEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCcccccccccc
Confidence 89999999999999988 56899999999999999999887554 559999999999999999874
No 110
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.62 E-value=2.5e-07 Score=84.66 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=65.5
Q ss_pred ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (335)
Q Consensus 225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~ 304 (335)
.|...+..+...+.+.++.+|||+|||+|..+..+++.. +.++|+++|+|+.+++.++++. .++.++.+|+..+
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~ 88 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW 88 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence 344444445556677889999999999999999999885 4579999999999999998874 4688999999877
Q ss_pred CCCCCCCceE
Q 019802 305 DPKDPAYSEV 314 (335)
Q Consensus 305 ~~~~~~fd~V 314 (335)
.+ ..+||.|
T Consensus 89 ~~-~~~fD~v 97 (258)
T PRK01683 89 QP-PQALDLI 97 (258)
T ss_pred CC-CCCccEE
Confidence 54 3468764
No 111
>PRK05785 hypothetical protein; Provisional
Probab=98.62 E-value=1e-07 Score=85.75 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL 316 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~ 316 (335)
++.+|||+|||+|..+.++++.. .++|+++|+|++|++.+++. ...+++|++++++.+++||.|.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEe
Confidence 47899999999999999998875 36999999999999998764 13578999999988899997544
No 112
>PRK06202 hypothetical protein; Provisional
Probab=98.61 E-value=1.6e-07 Score=84.55 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=60.8
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcC---CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~---~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~ 310 (335)
...+...++.+|||+|||+|..+..|++... ...+|+++|+|+.+++.++++.... ++.+.+.|+..++..+.+
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGER 129 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCC
Confidence 3344456778999999999999999887543 3459999999999999998876544 355666676666655677
Q ss_pred CceEEEE
Q 019802 311 YSEVSLI 317 (335)
Q Consensus 311 fd~V~~I 317 (335)
||.|.+.
T Consensus 130 fD~V~~~ 136 (232)
T PRK06202 130 FDVVTSN 136 (232)
T ss_pred ccEEEEC
Confidence 8876544
No 113
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.60 E-value=2.9e-07 Score=83.29 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
.++.+|||+|||+|..+..+++.+. ++++++++|+|+.+++.++++++..+. .+++++++|+.+++.. .+|.|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEE
Confidence 5788999999999999999998753 568999999999999999999988764 4689999999988754 36643
No 114
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.60 E-value=1.5e-07 Score=86.04 Aligned_cols=72 Identities=22% Similarity=0.427 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC-CCCCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD-PKDPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~-~~~~~fd~V 314 (335)
.++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++++..|+ .+++++++|+.++. ..+.+||.|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEE
Confidence 45789999999999999999986 36899999999999999999999987 47999999998875 345678864
No 115
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.60 E-value=1.8e-07 Score=90.30 Aligned_cols=91 Identities=26% Similarity=0.295 Sum_probs=71.9
Q ss_pred HHHHHHHcCCC-CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019802 230 SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (335)
Q Consensus 230 s~l~~~~l~~~-~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~ 308 (335)
+.+++..+... ++.+|||++||.|..+..++...+ ..+|+++|+++..++.+++|++..|+.++++.++|+..+....
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~ 123 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEE 123 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhc
Confidence 34444444433 457999999999999999987754 3589999999999999999999999998999999997754323
Q ss_pred CCCceEEEEEEecccc
Q 019802 309 PAYSEVSLIFCIFTWM 324 (335)
Q Consensus 309 ~~fd~V~~IllD~~cs 324 (335)
..|| .|++|||-+
T Consensus 124 ~~fD---~V~lDP~Gs 136 (382)
T PRK04338 124 RKFD---VVDIDPFGS 136 (382)
T ss_pred CCCC---EEEECCCCC
Confidence 3476 588999833
No 116
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.60 E-value=8.3e-08 Score=92.25 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=87.2
Q ss_pred cccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--c
Q 019802 216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--N 293 (335)
Q Consensus 216 ~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--n 293 (335)
.+.+.|.|.-|..+-..+...+. |.+|||++|=+|+.|.|.|. ++..+|+++|.|..-++.+++|++-.|+. .
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 46789999999999888776653 99999999999999999885 45569999999999999999999999984 4
Q ss_pred EEEEeccCCCCCC----CCCCCceEEEEEEeccccccc
Q 019802 294 IEVLHGDFLNLDP----KDPAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 294 i~~~~~D~~~~~~----~~~~fd~V~~IllD~~cs~~g 327 (335)
+.++++|+.++-. ....||. |++|||--+-+
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDl---IilDPPsF~r~ 304 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDL---IILDPPSFARS 304 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccE---EEECCcccccC
Confidence 8899999977543 3347875 99999976544
No 117
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.59 E-value=4.9e-07 Score=81.10 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=69.0
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA 310 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~ 310 (335)
.+...+.+.++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+. .++.++.+|+.+++.....
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 121 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS 121 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence 344556677889999999999999999999875468999999999999999999887654 3589999999888766667
Q ss_pred CceE
Q 019802 311 YSEV 314 (335)
Q Consensus 311 fd~V 314 (335)
||.|
T Consensus 122 ~D~I 125 (239)
T PRK00216 122 FDAV 125 (239)
T ss_pred ccEE
Confidence 8864
No 118
>COG0781 NusB Transcription termination factor [Transcription]
Probab=98.59 E-value=2.7e-07 Score=77.26 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHccchhh--hhhhhhhhh-cc-CCCc--cCHHHHHHHHHHHHhchHHHHHHHhhcccccc-cccc--
Q 019802 33 FARREAAKVLRLVLRGDARR--RAVGSIKSL-VY-SPSV--KNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWKR-- 103 (335)
Q Consensus 33 ~aR~~A~~iL~~v~~~~~~~--~~l~~~~~~-~~-~~~~--~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~-~~~~-- 103 (335)
.+|..|+++|++++-++... +....+... .. +.+. .+..++..||.||++++..||.+|.+. ++. ...+
T Consensus 12 ~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~--L~~w~~~rL~ 89 (151)
T COG0781 12 QARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPH--LKKWSLERLD 89 (151)
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHhh
Confidence 38999999999998855421 222211111 11 1111 678899999999999999999999984 453 2222
Q ss_pred --hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhh
Q 019802 104 --QEELVYILTYDILFGQEISLVGDAEKFLMLHKG 136 (335)
Q Consensus 104 --~~~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~ 136 (335)
.+++||+|+|||+|.+.+|....++|.|+..|.
T Consensus 90 ~verAILRla~yEl~~~~dvP~~VvInEaielaK~ 124 (151)
T COG0781 90 LVERAILRLALYELLFRDDVPYKVVINEAIELAKK 124 (151)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 379999999999999989988888888877653
No 119
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.57 E-value=3.6e-07 Score=85.12 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=63.6
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS 315 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~ 315 (335)
.+...++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.++++++..++ ++++...|+..... +++||.|.
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccEEE
Confidence 333344569999999999999999875 37999999999999999999999998 79999999877655 56788765
Q ss_pred EE
Q 019802 316 LI 317 (335)
Q Consensus 316 ~I 317 (335)
+.
T Consensus 190 ~~ 191 (287)
T PRK12335 190 ST 191 (287)
T ss_pred Ec
Confidence 44
No 120
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.57 E-value=3.1e-07 Score=81.26 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS 315 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~ 315 (335)
...++.+|||+|||+|..+..++...+ ..+++++|+|+.+++.+++++ .++.+.++|+.+ +..+++||.|.
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEE
Confidence 345678999999999999999988754 479999999999999998874 256788899888 66677888643
No 121
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.56 E-value=4e-07 Score=81.27 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSL 316 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~ 316 (335)
+.++.+|||+|||+|..+..++.. ..+|+++|+|+.++..+++++...+. .++.+.++|+..++ ++||.|.+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEE
Confidence 467899999999999999999875 35899999999999999999988776 47999999998876 56887543
No 122
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.56 E-value=4.9e-08 Score=85.20 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=81.2
Q ss_pred cccceEEecCch-HHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-E
Q 019802 218 IVNGCVFLQGKA-SSMVAAA-LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-I 294 (335)
Q Consensus 218 ~~~g~~~iQd~~-s~l~~~~-l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i 294 (335)
..+|+|++--+. +..++.. ...-.-+.|+|..||.||-|++.+.. ...|+++|+++.++..+++|++-+|+++ |
T Consensus 69 d~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rI 145 (263)
T KOG2730|consen 69 DREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRI 145 (263)
T ss_pred cccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCcee
Confidence 456777765432 1222211 11124578999999999999999877 3579999999999999999999999965 9
Q ss_pred EEEeccCCCCCCCCCCC--ceEEEEEEeccccccccc
Q 019802 295 EVLHGDFLNLDPKDPAY--SEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 295 ~~~~~D~~~~~~~~~~f--d~V~~IllD~~cs~~g~~ 329 (335)
.++++|+.++-.... | |.+++|++-|||+|+|..
T Consensus 146 tFI~GD~ld~~~~lq-~~K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 146 TFICGDFLDLASKLK-ADKIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred EEEechHHHHHHHHh-hhhheeeeeecCCCCCCcchh
Confidence 999999987653221 2 358899999999999874
No 123
>PHA03412 putative methyltransferase; Provisional
Probab=98.55 E-value=2.2e-07 Score=83.25 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcC--CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~--~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
..+.+|||+|||+|..+..+++.+. +...|+++|+++.+++.+++|.. ++.++++|+...+. +.+|| .|
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~-~~~FD---lI 118 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF-DTLFD---MA 118 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc-cCCcc---EE
Confidence 3478999999999999999998763 35699999999999999998853 47899999987654 34565 59
Q ss_pred EEeccccccc
Q 019802 318 FCIFTWMIIM 327 (335)
Q Consensus 318 llD~~cs~~g 327 (335)
+.+||-.-.+
T Consensus 119 IsNPPY~~~~ 128 (241)
T PHA03412 119 ISNPPFGKIK 128 (241)
T ss_pred EECCCCCCcc
Confidence 9999987544
No 124
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.54 E-value=4e-07 Score=84.16 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCC--eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~--g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
.++.+|||+|||+|..+..++...+.. ..|+++|+|+.+++.++++. .++.+.++|+.++++.+++||.|..+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence 456789999999999999999876532 37999999999999987652 46889999999998888899987655
Q ss_pred E
Q 019802 318 F 318 (335)
Q Consensus 318 l 318 (335)
+
T Consensus 159 ~ 159 (272)
T PRK11088 159 Y 159 (272)
T ss_pred c
Confidence 4
No 125
>PLN03075 nicotianamine synthase; Provisional
Probab=98.54 E-value=3.5e-07 Score=84.75 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchHHHHHH-HHcCCCeEEEEEeCCHHHHHHHHHHHHH-hCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIKL-SGAAN-IEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la-~~~~~~g~i~a~D~~~~rl~~~~~~~~~-~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
++++|+|+|||||+.|..+. ....++++++++|+++.+++.+++++++ .|+.+ |++..+|+.+.......||. |
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDl---V 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDV---V 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCE---E
Confidence 77899999999998876543 3455779999999999999999999965 88865 99999999987544456886 5
Q ss_pred EEe
Q 019802 318 FCI 320 (335)
Q Consensus 318 llD 320 (335)
+++
T Consensus 200 F~~ 202 (296)
T PLN03075 200 FLA 202 (296)
T ss_pred EEe
Confidence 555
No 126
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.53 E-value=1.2e-07 Score=83.88 Aligned_cols=90 Identities=22% Similarity=0.391 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC--
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP-- 306 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~-- 306 (335)
.+++..++......+||++|++.|.-|.+||+.++++|+|+++|+++++.+.+++++++.|+. +|+++.+|+.+.-+
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence 344444444445679999999999999999999988899999999999999999999999985 59999999976432
Q ss_pred --C--CCCCceEEEEEEecc
Q 019802 307 --K--DPAYSEVSLIFCIFT 322 (335)
Q Consensus 307 --~--~~~fd~V~~IllD~~ 322 (335)
. .+.|| -||+|..
T Consensus 114 ~~~~~~~~fD---~VFiDa~ 130 (205)
T PF01596_consen 114 ANDGEEGQFD---FVFIDAD 130 (205)
T ss_dssp HHTTTTTSEE---EEEEEST
T ss_pred HhccCCCcee---EEEEccc
Confidence 1 13466 4999975
No 127
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.53 E-value=4.1e-07 Score=83.19 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=70.5
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~ 308 (335)
-...+...++..++++|||+|||+|..|..|++.. ..|+++|+++.+++.+++++.. ..+++++++|+.+++..
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-
Confidence 34455666778889999999999999999999884 3599999999999999988754 45799999999988764
Q ss_pred CCCceEEEEEEecccc
Q 019802 309 PAYSEVSLIFCIFTWM 324 (335)
Q Consensus 309 ~~fd~V~~IllD~~cs 324 (335)
.||....|+-++|-.
T Consensus 91 -~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYN 105 (253)
T ss_pred -HcCCcceEEEcCChh
Confidence 355334566676643
No 128
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.52 E-value=3e-07 Score=79.30 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC-CC--CCCceEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP-KD--PAYSEVS 315 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~-~~--~~fd~V~ 315 (335)
-.|.+|||++||+|..++..+.+ +..+++.+|.+.+-+..+++|++.+++ .++.++..|+..... .. +.||.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDl-- 117 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDL-- 117 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccE--
Confidence 47999999999999999988887 467999999999999999999999995 458899999985421 11 23764
Q ss_pred EEEEecccc
Q 019802 316 LIFCIFTWM 324 (335)
Q Consensus 316 ~IllD~~cs 324 (335)
|++|||--
T Consensus 118 -VflDPPy~ 125 (187)
T COG0742 118 -VFLDPPYA 125 (187)
T ss_pred -EEeCCCCc
Confidence 99999975
No 129
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.52 E-value=4.8e-07 Score=87.56 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=65.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~ 309 (335)
...+...+.+++|.+|||+|||+|+.+.++++.. +.+|+++|+|+.+++.++++++ +. ++++...|...+ ++
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l---~~ 227 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL---NG 227 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc---CC
Confidence 3455667788999999999999999999999875 3689999999999999999986 33 478888898766 35
Q ss_pred CCceEEEE
Q 019802 310 AYSEVSLI 317 (335)
Q Consensus 310 ~fd~V~~I 317 (335)
+||.|.++
T Consensus 228 ~fD~Ivs~ 235 (383)
T PRK11705 228 QFDRIVSV 235 (383)
T ss_pred CCCEEEEe
Confidence 69976543
No 130
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.51 E-value=6.8e-07 Score=89.05 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=66.6
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd 312 (335)
+...+.+.++.+|||+|||+|..+..++... +.+|+++|+|+.+++.++++....+ .++++.++|+...+.++++||
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEE
Confidence 4445567789999999999999999999875 4689999999999999999887444 368999999998876667788
Q ss_pred eEEE
Q 019802 313 EVSL 316 (335)
Q Consensus 313 ~V~~ 316 (335)
.|.+
T Consensus 335 ~I~s 338 (475)
T PLN02336 335 VIYS 338 (475)
T ss_pred EEEE
Confidence 7544
No 131
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.51 E-value=3.3e-07 Score=81.44 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--------CCCCC
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--------PKDPA 310 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--------~~~~~ 310 (335)
.++|.+|||+|||||+.+..+++..++.+.|+|+|+++ + .+..+++++++|+.+.. ..+.+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 46789999999999999999999987778999999988 1 13457899999998853 33445
Q ss_pred CceEEEEEEec
Q 019802 311 YSEVSLIFCIF 321 (335)
Q Consensus 311 fd~V~~IllD~ 321 (335)
|| .|+.|+
T Consensus 118 ~D---~V~S~~ 125 (209)
T PRK11188 118 VQ---VVMSDM 125 (209)
T ss_pred CC---EEecCC
Confidence 66 477664
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=98.50 E-value=8.1e-07 Score=81.32 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=64.4
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL 316 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~ 316 (335)
+.+.++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++ .++.++++|+.++.. ...|| .
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-~~kFD---l 129 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-NEKFD---V 129 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc-cCCCc---E
Confidence 3456678999999999999999888743 369999999999999998874 368899999988763 34566 5
Q ss_pred EEEecccccc
Q 019802 317 IFCIFTWMII 326 (335)
Q Consensus 317 IllD~~cs~~ 326 (335)
|+.|||.-..
T Consensus 130 IIsNPPF~~l 139 (279)
T PHA03411 130 VISNPPFGKI 139 (279)
T ss_pred EEEcCCcccc
Confidence 9999987643
No 133
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.48 E-value=1.8e-07 Score=86.58 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=78.8
Q ss_pred CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (335)
Q Consensus 215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-- 292 (335)
..+-+.|.|.-|...-.++.... .|.+|||++|-+||.+.+.+. ++..+|+++|.|...++.+++|++..|++
T Consensus 100 ~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 100 TDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp SSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred CCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 34678999999999988887764 588999999999999998764 45568999999999999999999999874
Q ss_pred cEEEEeccCCCCCC---CCCCCceEEEEEEeccccccc
Q 019802 293 NIEVLHGDFLNLDP---KDPAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 293 ni~~~~~D~~~~~~---~~~~fd~V~~IllD~~cs~~g 327 (335)
.++++++|+.+.-. ....|| .|+||||.-.-|
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD---~IIlDPPsF~k~ 209 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFD---LIILDPPSFAKS 209 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EE---EEEE--SSEESS
T ss_pred ceEEEecCHHHHHHHHhcCCCCC---EEEECCCCCCCC
Confidence 69999999976322 233565 599999976554
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.47 E-value=6.3e-07 Score=89.82 Aligned_cols=81 Identities=10% Similarity=0.230 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFC 319 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~Ill 319 (335)
++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|+++.|+. ++.++++|+.+.. ....|| .|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-~~~~fD---lIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-EKQKFD---FIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-cCCCcc---EEEE
Confidence 457899999999999999988754 579999999999999999999999985 5899999986532 223465 5999
Q ss_pred ecccccc
Q 019802 320 IFTWMII 326 (335)
Q Consensus 320 D~~cs~~ 326 (335)
+||....
T Consensus 213 NPPYi~~ 219 (506)
T PRK01544 213 NPPYISH 219 (506)
T ss_pred CCCCCCc
Confidence 9987654
No 135
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.44 E-value=1.8e-06 Score=76.58 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=65.4
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd 312 (335)
+...+...++.+|||+|||+|..+..++...++.++++++|+++..++.++++.. ...++.+..+|+.+++...+.||
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEE
Confidence 3444556688999999999999999999887544799999999999999999886 34568999999998876556677
Q ss_pred eE
Q 019802 313 EV 314 (335)
Q Consensus 313 ~V 314 (335)
.|
T Consensus 109 ~i 110 (223)
T TIGR01934 109 AV 110 (223)
T ss_pred EE
Confidence 64
No 136
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.44 E-value=1.5e-06 Score=75.82 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=62.9
Q ss_pred ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (335)
Q Consensus 225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~ 304 (335)
+....|.+ ...+..-++.++||+|||.|.-+..||++ +..|+|+|.|+..++.+++.+++.+++ |++.+.|..+.
T Consensus 15 ~~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~ 89 (192)
T PF03848_consen 15 LTPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF 89 (192)
T ss_dssp B----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB
T ss_pred CCCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc
Confidence 33444553 44566667789999999999999999987 478999999999999999999999996 99999999887
Q ss_pred CCCCCCCceEE
Q 019802 305 DPKDPAYSEVS 315 (335)
Q Consensus 305 ~~~~~~fd~V~ 315 (335)
.++ ..||.|.
T Consensus 90 ~~~-~~yD~I~ 99 (192)
T PF03848_consen 90 DFP-EEYDFIV 99 (192)
T ss_dssp S-T-TTEEEEE
T ss_pred ccc-CCcCEEE
Confidence 765 4577543
No 137
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=1.2e-06 Score=79.14 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC--CCCCCCCCceEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN--LDPKDPAYSEVSLI 317 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~--~~~~~~~fd~V~~I 317 (335)
.+..+||+|||+|..+..++..++ ++.|+|+|.|+..+..+.+|++|+++.+ +.+++.+.+. ..+..-.....+.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 456899999999999999999887 7999999999999999999999999866 6677554433 11111112345568
Q ss_pred EEecccc
Q 019802 318 FCIFTWM 324 (335)
Q Consensus 318 llD~~cs 324 (335)
+.+||.-
T Consensus 227 vsNPPYI 233 (328)
T KOG2904|consen 227 VSNPPYI 233 (328)
T ss_pred ecCCCcc
Confidence 8898864
No 138
>PRK06922 hypothetical protein; Provisional
Probab=98.43 E-value=1.2e-06 Score=88.67 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=65.1
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCC
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAY 311 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~f 311 (335)
...++..+|.+|||+|||+|..+..+++.. +.++++++|+|+.+++.++++....+. ++.++++|+.+++ +.+++|
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCE
Confidence 335566679999999999999999998875 468999999999999999999876664 6889999998876 455667
Q ss_pred ceE
Q 019802 312 SEV 314 (335)
Q Consensus 312 d~V 314 (335)
|.|
T Consensus 489 DvV 491 (677)
T PRK06922 489 DTI 491 (677)
T ss_pred EEE
Confidence 753
No 139
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=5.8e-07 Score=84.77 Aligned_cols=81 Identities=25% Similarity=0.308 Sum_probs=70.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
..+|++|+||.||-|..|+.+|..- ..+|+|+|+++..++.+++|++..++.+ |+.+++|+....+....||+ |
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDr---I 260 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADR---I 260 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCE---E
Confidence 3569999999999999999999873 3349999999999999999999999988 89999999999887566887 7
Q ss_pred EEecccc
Q 019802 318 FCIFTWM 324 (335)
Q Consensus 318 llD~~cs 324 (335)
++..|-+
T Consensus 261 im~~p~~ 267 (341)
T COG2520 261 IMGLPKS 267 (341)
T ss_pred EeCCCCc
Confidence 7766654
No 140
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.42 E-value=1.1e-06 Score=82.79 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCceEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVS 315 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni~~~~~D~~~~~~~~~~fd~V~ 315 (335)
+|.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++.+..+ ..++.+.+.|...+ +++||.|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEE
Confidence 5789999999999999999975 3689999999999999999998763 23578888887654 35698764
Q ss_pred EE
Q 019802 316 LI 317 (335)
Q Consensus 316 ~I 317 (335)
+.
T Consensus 218 ~~ 219 (315)
T PLN02585 218 CL 219 (315)
T ss_pred Ec
Confidence 43
No 141
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.41 E-value=2e-07 Score=86.71 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=67.7
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DP 309 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~---~~ 309 (335)
+...|.++++..++|+.-|.||.|.++.+..++ ++|+|+|.++..++.++++++..+ .++.+++.++.++... ..
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHcc
Confidence 566788999999999999999999999998877 999999999999999999888653 4699999999887642 22
Q ss_pred CCceEEEEEEecccccc
Q 019802 310 AYSEVSLIFCIFTWMII 326 (335)
Q Consensus 310 ~fd~V~~IllD~~cs~~ 326 (335)
....|++||+|.++|..
T Consensus 90 ~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 90 GINKVDGILFDLGVSSM 106 (310)
T ss_dssp TTS-EEEEEEE-S--HH
T ss_pred CCCccCEEEEccccCHH
Confidence 46789999999999963
No 142
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1.3e-06 Score=80.26 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=81.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CC
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DP 309 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~ 309 (335)
-+...|.++|+...+|+.-|-||.+..+.+..++.|+++++|.++..++.+++.+...+ .++.+++..+.++... ..
T Consensus 14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhc
Confidence 35678899999999999999999999999999888999999999999999999999877 5799999998887643 22
Q ss_pred CCceEEEEEEecccccc
Q 019802 310 AYSEVSLIFCIFTWMII 326 (335)
Q Consensus 310 ~fd~V~~IllD~~cs~~ 326 (335)
....||+||+|.+.|+-
T Consensus 93 ~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 93 GIGKVDGILLDLGVSSP 109 (314)
T ss_pred CCCceeEEEEeccCCcc
Confidence 35678899999999863
No 143
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.40 E-value=2e-06 Score=80.18 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=62.2
Q ss_pred hHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 019802 229 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD 305 (335)
Q Consensus 229 ~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~ 305 (335)
..+++...+. ..+|.+|||+|||+|..+..++.+ + ..+|+++|+++.+++.+++|+...++.+ +.+...|...
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-- 220 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-- 220 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--
Confidence 3444444333 457899999999999999887764 3 4699999999999999999999988864 5666665322
Q ss_pred CCCCCCceEEEEEEec
Q 019802 306 PKDPAYSEVSLIFCIF 321 (335)
Q Consensus 306 ~~~~~fd~V~~IllD~ 321 (335)
.....||. |+++.
T Consensus 221 ~~~~~fDl---Vvan~ 233 (288)
T TIGR00406 221 PIEGKADV---IVANI 233 (288)
T ss_pred ccCCCceE---EEEec
Confidence 22446776 45443
No 144
>PRK10742 putative methyltransferase; Provisional
Probab=98.40 E-value=9.1e-07 Score=79.68 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCCCC--EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEe
Q 019802 230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GA---ANIEVLH 298 (335)
Q Consensus 230 s~l~~~~l~~~~g~--~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~------g~---~ni~~~~ 298 (335)
.+.++..+++++|. +|||++||.|.-++.++.+ +++|+++|.|+.....++++++++ +. .++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46778889999998 9999999999999999988 467999999999999999999996 42 5699999
Q ss_pred ccCCCCCCC-CCCCceEEEEEEecccc
Q 019802 299 GDFLNLDPK-DPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 299 ~D~~~~~~~-~~~fd~V~~IllD~~cs 324 (335)
+|+.++-.. ...|| .|++||+--
T Consensus 152 ~da~~~L~~~~~~fD---VVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALTDITPRPQ---VVYLDPMFP 175 (250)
T ss_pred CcHHHHHhhCCCCCc---EEEECCCCC
Confidence 999776432 22455 699998754
No 145
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.38 E-value=1.1e-06 Score=78.73 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=66.5
Q ss_pred EecCchHHHHHHHcCC---CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802 224 FLQGKASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (335)
Q Consensus 224 ~iQd~~s~l~~~~l~~---~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D 300 (335)
.+|...+..+...+.. ..+.+|||+|||+|..+.++++.. +..+++++|+++.+++.+++++. .++.++.+|
T Consensus 14 ~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d 88 (240)
T TIGR02072 14 KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecc
Confidence 3555555444444432 345789999999999999999885 45789999999999999888765 378899999
Q ss_pred CCCCCCCCCCCceE
Q 019802 301 FLNLDPKDPAYSEV 314 (335)
Q Consensus 301 ~~~~~~~~~~fd~V 314 (335)
+.+.+..+++||.|
T Consensus 89 ~~~~~~~~~~fD~v 102 (240)
T TIGR02072 89 AEKLPLEDSSFDLI 102 (240)
T ss_pred hhhCCCCCCceeEE
Confidence 99988767778764
No 146
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.38 E-value=7.9e-07 Score=80.79 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=76.5
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD 305 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~ 305 (335)
....+++..++......+||++|++.|.-|++||..++++|+|+++|.++++.+.+++++++.|+ .+|+++.+|+.+.-
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 45566666666666678999999999999999999888889999999999999999999999997 46999999997743
Q ss_pred CC-------CCCCceEEEEEEecc
Q 019802 306 PK-------DPAYSEVSLIFCIFT 322 (335)
Q Consensus 306 ~~-------~~~fd~V~~IllD~~ 322 (335)
+. .++||. ||+|.-
T Consensus 145 ~~l~~~~~~~~~fD~---iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDF---IFVDAD 165 (247)
T ss_pred HHHHhccccCCcccE---EEecCC
Confidence 22 245775 888853
No 147
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.37 E-value=2.2e-06 Score=76.80 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
..++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...+. .++.+..+|.. ..+++||.|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEE
Confidence 356889999999999999999875 25699999999999999999998887 56899999843 334568864
No 148
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=4.9e-07 Score=74.12 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
--.|..++|+|||.|..++..+ |.....|+++|+++..|+...+|++.+.+ ++.++++|..++.+....|| ..+
T Consensus 46 diEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fD---tav 119 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFD---TAV 119 (185)
T ss_pred cccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEe---eEE
Confidence 3468899999999999996555 44567999999999999999999999998 57999999999888776555 588
Q ss_pred Eeccc
Q 019802 319 CIFTW 323 (335)
Q Consensus 319 lD~~c 323 (335)
.|||-
T Consensus 120 iNppF 124 (185)
T KOG3420|consen 120 INPPF 124 (185)
T ss_pred ecCCC
Confidence 89874
No 149
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.36 E-value=2.9e-06 Score=80.30 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=62.2
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAY 311 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~~~~~f 311 (335)
+...+++.+|.+|||+|||+|..+..++.. + ...|+++|+|+.++...+...+..+ -.+|.++.+|+.+++. ...|
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F 190 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF 190 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence 344566678999999999999999999887 3 3479999999999876555444433 2479999999999987 6679
Q ss_pred ceEE
Q 019802 312 SEVS 315 (335)
Q Consensus 312 d~V~ 315 (335)
|.|.
T Consensus 191 D~V~ 194 (322)
T PRK15068 191 DTVF 194 (322)
T ss_pred CEEE
Confidence 8653
No 150
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.36 E-value=5.1e-07 Score=80.38 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
.+|.+|||+|||-|..+..||.+ +..|+++|++++.++.++..+.+-|+. |...+...+++.....+||.|.+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcCCCccEEEEh
Confidence 57999999999999999999987 379999999999999999999999984 788888888887766789975543
No 151
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.35 E-value=9.3e-06 Score=71.72 Aligned_cols=95 Identities=26% Similarity=0.258 Sum_probs=73.1
Q ss_pred chHHHHHHHc------CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019802 228 KASSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (335)
Q Consensus 228 ~~s~l~~~~l------~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~ 301 (335)
.-|.|.+.++ ..++|.+||-+||++|..-.|++...+.+|.|+|++.|+...+.+-+.+++. +||..+.+|+
T Consensus 54 ~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DA 131 (229)
T PF01269_consen 54 FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDA 131 (229)
T ss_dssp TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-T
T ss_pred hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccC
Confidence 3456665543 3678999999999999999999999998999999999999999988877764 5899999999
Q ss_pred CCCCCCCCCCceEEEEEEecccc
Q 019802 302 LNLDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 302 ~~~~~~~~~fd~V~~IllD~~cs 324 (335)
+.+.....-...||.|+.|....
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVaQp 154 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVAQP 154 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-SST
T ss_pred CChHHhhcccccccEEEecCCCh
Confidence 98765555567999999997643
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.33 E-value=2.1e-06 Score=75.48 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC---CCCCCCceEEEEEE
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD---PKDPAYSEVSLIFC 319 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~---~~~~~fd~V~~Ill 319 (335)
..+||+|||.|....++|... ++..++++|++..++..+.+.+.+.|++|+.++++|+..+- +.++++ +.|.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v---~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSV---DRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSE---EEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCch---heEEE
Confidence 389999999999999999985 56899999999999999999999999999999999998832 233444 45777
Q ss_pred eccc
Q 019802 320 IFTW 323 (335)
Q Consensus 320 D~~c 323 (335)
.+|+
T Consensus 95 ~FPD 98 (195)
T PF02390_consen 95 NFPD 98 (195)
T ss_dssp ES--
T ss_pred eCCC
Confidence 6654
No 153
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.30 E-value=3.3e-06 Score=79.18 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNL 304 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~ 304 (335)
.++.+|||+|||+|.||..+++.+....+++++|+|+.||+.+.+++.... --+|..+++|+.+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 467899999999999999999887545789999999999999999987632 12477889999873
No 154
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=4.5e-06 Score=75.90 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=72.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~ 309 (335)
.+-++...++.+++.||++|+|.|..|..|++. ..+|+|+|+++..++.+++.+. ...|++++++|+...++..-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh
Confidence 456677888999999999999999999999998 3579999999999999999987 44589999999999887642
Q ss_pred -CCceEEEEEEecccccc
Q 019802 310 -AYSEVSLIFCIFTWMII 326 (335)
Q Consensus 310 -~fd~V~~IllD~~cs~~ 326 (335)
.+. .|+-+.|.+-+
T Consensus 94 ~~~~---~vVaNlPY~Is 108 (259)
T COG0030 94 AQPY---KVVANLPYNIS 108 (259)
T ss_pred cCCC---EEEEcCCCccc
Confidence 233 36667666543
No 155
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.30 E-value=2.5e-06 Score=81.02 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
.++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++.. ..+++++.+|+.+++..+++||.|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEE
Confidence 4688999999999999999988764 4789999999999999998764 346889999999988777778864
No 156
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=2.5e-06 Score=79.00 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=63.9
Q ss_pred chHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019802 228 KASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL 304 (335)
Q Consensus 228 ~~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~ 304 (335)
+..+++...|+ .++|..|||+|||+|-.++..+.+ +..+++|+|+++..++.+++|+.+.|+.. +.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 34455555554 468999999999999999988877 45789999999999999999999999875 22333333332
Q ss_pred CCCCCCCceEEEEE
Q 019802 305 DPKDPAYSEVSLIF 318 (335)
Q Consensus 305 ~~~~~~fd~V~~Il 318 (335)
+ ....||.|.+-+
T Consensus 225 ~-~~~~~DvIVANI 237 (300)
T COG2264 225 P-ENGPFDVIVANI 237 (300)
T ss_pred c-ccCcccEEEehh
Confidence 2 234688654433
No 157
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.29 E-value=3.9e-06 Score=76.57 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEec
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHG 299 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~ 299 (335)
..++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.+++|++..++ .++.+..+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~ 176 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG 176 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC
Confidence 467999999999999988876654 3 34799999999999999999999887 33444433
No 158
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.29 E-value=3.3e-06 Score=64.14 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=62.1
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEEEecc
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIFCIFT 322 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~ 322 (335)
+|+|+|||+|..+..++. .+..+++++|+++..+..+++.....+..++.++..|+.+... ... .++.|+++++
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADE---SFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCC---ceEEEEEccc
Confidence 489999999999998887 3467999999999999999876655566779999999988764 223 4556899888
Q ss_pred ccc
Q 019802 323 WMI 325 (335)
Q Consensus 323 cs~ 325 (335)
|..
T Consensus 76 ~~~ 78 (107)
T cd02440 76 LHH 78 (107)
T ss_pred eee
Confidence 865
No 159
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.26 E-value=3.5e-06 Score=78.50 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=58.8
Q ss_pred chHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 228 KASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 228 ~~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+..+++..++. ..+|.+|||+|||+|-.+...+.+ +..+|+|+|+++..++.+++|++..|+.+ .+......+..
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~ 222 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLV 222 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccc
Confidence 44555555543 567899999999999999887776 45799999999999999999999999976 33222222222
Q ss_pred CCCCCCceEEE
Q 019802 306 PKDPAYSEVSL 316 (335)
Q Consensus 306 ~~~~~fd~V~~ 316 (335)
...||.|.+
T Consensus 223 --~~~~dlvvA 231 (295)
T PF06325_consen 223 --EGKFDLVVA 231 (295)
T ss_dssp --CS-EEEEEE
T ss_pred --cccCCEEEE
Confidence 255776444
No 160
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.26 E-value=2.4e-06 Score=82.23 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=67.8
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceEEEEEEec
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVSLIFCIF 321 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V~~IllD~ 321 (335)
-+|||++||+|..++.++...++..+|+++|+++..++.+++|++..++.++++++.|+..+... ...|| .|++||
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fD---vIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFH---VIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCC---EEEeCC
Confidence 48999999999999999987544568999999999999999999999998899999999876432 23576 488999
Q ss_pred cccc
Q 019802 322 TWMI 325 (335)
Q Consensus 322 ~cs~ 325 (335)
+-|.
T Consensus 123 fGs~ 126 (374)
T TIGR00308 123 FGTP 126 (374)
T ss_pred CCCc
Confidence 8553
No 161
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.24 E-value=2.2e-06 Score=75.00 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+.++--++++ +.+.+-.+|.|+|||||..|..|+++.+ ...|+++|.|+.|++.+++++ .|+++..+|..++.
T Consensus 16 tRPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~ 88 (257)
T COG4106 16 TRPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK 88 (257)
T ss_pred cCcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC
Confidence 3445455554 3456778999999999999999999975 589999999999999986653 47899999999988
Q ss_pred CCC
Q 019802 306 PKD 308 (335)
Q Consensus 306 ~~~ 308 (335)
++.
T Consensus 89 p~~ 91 (257)
T COG4106 89 PEQ 91 (257)
T ss_pred CCC
Confidence 753
No 162
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.8e-06 Score=84.25 Aligned_cols=92 Identities=15% Similarity=0.238 Sum_probs=75.2
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CC
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DP 309 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~ 309 (335)
.+.+.++..++..++|+|||+|..+..+|.. -.+|+++++++..++-++.|++..|++|.+++++-++++-+. ..
T Consensus 374 ~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 374 TIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred HHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhccc
Confidence 3445677888999999999999999999876 468999999999999999999999999999999977776543 23
Q ss_pred CCceEE-EEEEecccccc
Q 019802 310 AYSEVS-LIFCIFTWMII 326 (335)
Q Consensus 310 ~fd~V~-~IllD~~cs~~ 326 (335)
.+|.=+ ++++|||-.|.
T Consensus 451 ~~~~~~~v~iiDPpR~Gl 468 (534)
T KOG2187|consen 451 CCDSETLVAIIDPPRKGL 468 (534)
T ss_pred CCCCCceEEEECCCcccc
Confidence 344334 68889998543
No 163
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.23 E-value=6.3e-06 Score=73.40 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH------------HhCCCcEEEEeccCCCCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK------------LSGAANIEVLHGDFLNLDPK 307 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~------------~~g~~ni~~~~~D~~~~~~~ 307 (335)
.++.+|||+|||.|.-+..||++ ...|+|+|+|+..++.+.+... +..-.+|++.++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 57889999999999999999976 4689999999999997633211 01113588999999998753
Q ss_pred -CCCCce
Q 019802 308 -DPAYSE 313 (335)
Q Consensus 308 -~~~fd~ 313 (335)
...||.
T Consensus 110 ~~~~fD~ 116 (213)
T TIGR03840 110 DLGPVDA 116 (213)
T ss_pred cCCCcCE
Confidence 345774
No 164
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.22 E-value=6.8e-06 Score=73.41 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEE
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVS 315 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~ 315 (335)
.+|||+|||+|+.+..+++..+ ..+|+++|+|+.+++.++++++..|+. ++.++..|+...+.. .+||.|.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEee
Confidence 3799999999999999998863 479999999999999999999998874 589999999766443 4688653
No 165
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.18 E-value=1.8e-05 Score=74.37 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=66.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 308 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~ 308 (335)
...+...++..++.+|||+|||+|..+..+++.. ++.+++++|. +.+++.+++++++.|+. +|+++.+|+.+.+.+
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP- 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-
Confidence 4455566778889999999999999999999986 4589999997 78999999999999985 599999999765433
Q ss_pred CCCce
Q 019802 309 PAYSE 313 (335)
Q Consensus 309 ~~fd~ 313 (335)
.+|.
T Consensus 215 -~~D~ 218 (306)
T TIGR02716 215 -EADA 218 (306)
T ss_pred -CCCE
Confidence 2554
No 166
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.17 E-value=9.3e-06 Score=80.91 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=64.1
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CC
Q 019802 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LD 305 (335)
Q Consensus 228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~--~~ 305 (335)
.....+...+.+.++.+|||+|||+|..+..+++. ..+|+++|+++.+++..++... ...++.++++|+.. ++
T Consensus 24 ~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 24 EERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLN 98 (475)
T ss_pred hhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccC
Confidence 33445556677778889999999999999999987 3589999999999987654221 24679999999964 44
Q ss_pred CCCCCCceEEEEEEecc
Q 019802 306 PKDPAYSEVSLIFCIFT 322 (335)
Q Consensus 306 ~~~~~fd~V~~IllD~~ 322 (335)
..+++||. |++..+
T Consensus 99 ~~~~~fD~---I~~~~~ 112 (475)
T PLN02336 99 ISDGSVDL---IFSNWL 112 (475)
T ss_pred CCCCCEEE---Eehhhh
Confidence 44556764 555543
No 167
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.16 E-value=5.4e-07 Score=69.85 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=47.3
Q ss_pred EEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCCCceEEEE
Q 019802 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPAYSEVSLI 317 (335)
Q Consensus 246 LD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~fd~V~~I 317 (335)
||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+......+..+.... ..+||.|.++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh
Confidence 799999999999999986 5789999999999999999999998876666666555554322 2478875443
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.15 E-value=1.3e-05 Score=75.51 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEe-ccCCCCCC----CCCCCce
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLH-GDFLNLDP----KDPAYSE 313 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~-ni~~~~-~D~~~~~~----~~~~fd~ 313 (335)
++.+|||+|||+|+....++.... ..+++|+|+++..++.+++|++.. ++. .|.+.. .|...+.. ....|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f-- 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF-- 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce--
Confidence 567999999999999999988754 579999999999999999999998 775 477753 34333321 12344
Q ss_pred EEEEEEeccccccc
Q 019802 314 VSLIFCIFTWMIIM 327 (335)
Q Consensus 314 V~~IllD~~cs~~g 327 (335)
|.|+++||--.++
T Consensus 191 -DlivcNPPf~~s~ 203 (321)
T PRK11727 191 -DATLCNPPFHASA 203 (321)
T ss_pred -EEEEeCCCCcCcc
Confidence 5699999876543
No 169
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.15 E-value=8.5e-06 Score=76.64 Aligned_cols=106 Identities=23% Similarity=0.245 Sum_probs=73.7
Q ss_pred ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHc------CCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (335)
Q Consensus 221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~------~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-- 292 (335)
|.|+--..-+.+++.++.+.++++|+|-|||+|+....+.+.+ .....|+++|+++..+..++-|+.-.|..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 4444445567788889999999999999999999999888754 24579999999999999999988766653
Q ss_pred cEEEEeccCCCCCCCCCCCceEEEEEEeccccccc
Q 019802 293 NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 293 ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g 327 (335)
+..+.++|....+... ....++.|+.+||.+..+
T Consensus 106 ~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~ 139 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKE 139 (311)
T ss_dssp GCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES
T ss_pred cccccccccccccccc-cccccccccCCCCccccc
Confidence 3468888876654322 123556799999998773
No 170
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.14 E-value=6.8e-06 Score=73.68 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=66.2
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCceEEEEEE
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVSLIFC 319 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~---~~~~fd~V~~Ill 319 (335)
..+||+|||.|....++|.. +++..++++|++...+..+.+.+.+.|++|+.++++||..+-. .+++.| .|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~---~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLD---KIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCee---EEEE
Confidence 58999999999999999998 5678999999999999999999999999999999999987553 333555 4777
Q ss_pred eccc
Q 019802 320 IFTW 323 (335)
Q Consensus 320 D~~c 323 (335)
.||+
T Consensus 126 ~FPD 129 (227)
T COG0220 126 NFPD 129 (227)
T ss_pred ECCC
Confidence 7664
No 171
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.8e-06 Score=72.95 Aligned_cols=80 Identities=24% Similarity=0.241 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCCCce
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPAYSE 313 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-----~~~fd~ 313 (335)
.++|..|+|+||+|||.+-.++..++.+++|+|+|+.+-.. +.+|.++++|++.-+.. .-....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46799999999999999999999999889999999987642 45799999999886631 112223
Q ss_pred EEEEEEeccccccccc
Q 019802 314 VSLIFCIFTWMIIMFH 329 (335)
Q Consensus 314 V~~IllD~~cs~~g~~ 329 (335)
++.|+.|+----+|.+
T Consensus 112 ~DvV~sD~ap~~~g~~ 127 (205)
T COG0293 112 VDVVLSDMAPNTSGNR 127 (205)
T ss_pred cceEEecCCCCcCCCc
Confidence 6779999766666654
No 172
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.14 E-value=8.1e-06 Score=71.63 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=66.7
Q ss_pred eEEecCchHHHHHHHcCCCC--CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802 222 CVFLQGKASSMVAAALAPKP--GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (335)
Q Consensus 222 ~~~iQd~~s~l~~~~l~~~~--g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~ 299 (335)
...||-+-+.-..++++.+. +.-|||+|||+|-.+..+.+- ....+++|+|+.||+.+.+. ++. -.++.+
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e---gdlil~ 100 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE---GDLILC 100 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh---cCeeee
Confidence 35678777777777777666 678999999999999877653 36889999999999999873 222 135666
Q ss_pred cCCC-CCCCCCCCceEEEE
Q 019802 300 DFLN-LDPKDPAYSEVSLI 317 (335)
Q Consensus 300 D~~~-~~~~~~~fd~V~~I 317 (335)
|..+ +|+...+||.|..|
T Consensus 101 DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred ecCCCCCCCCCccceEEEe
Confidence 6644 77788899987554
No 173
>PRK04457 spermidine synthase; Provisional
Probab=98.14 E-value=9.5e-06 Score=74.61 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC-CCCCCceEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP-KDPAYSEVSL 316 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~-~~~~fd~V~~ 316 (335)
..++.+|||+|+|.|..+..++... +..+|+++|+++..++.+++++...+. ++++++++|+.++-. ...+|| .
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD---~ 139 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTD---V 139 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCC---E
Confidence 3456789999999999999999886 468999999999999999999865443 679999999976432 224576 4
Q ss_pred EEEecc
Q 019802 317 IFCIFT 322 (335)
Q Consensus 317 IllD~~ 322 (335)
|++|..
T Consensus 140 I~~D~~ 145 (262)
T PRK04457 140 ILVDGF 145 (262)
T ss_pred EEEeCC
Confidence 888964
No 174
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.13 E-value=7.3e-06 Score=69.88 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCc
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd 312 (335)
++|||+|||.|..-..|++.- =.+.++++|.|++.+++++..+++-|++| |++.+.|..+..+....||
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfd 138 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFD 138 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccccccee
Confidence 399999999999999998762 34679999999999999999999999988 9999999999877777788
No 175
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.12 E-value=6.1e-06 Score=71.63 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=61.1
Q ss_pred EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
+|-|.+-.+++...|....-.++||+|||.|..|.+||.+. .+++++|+++..++.+++++.. .++|++.+.|..
T Consensus 25 ~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp 99 (201)
T PF05401_consen 25 WYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVP 99 (201)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TT
T ss_pred HHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCC
Confidence 34455544555445666667789999999999999999883 6899999999999999999984 468999999998
Q ss_pred CCCCCCCCCce
Q 019802 303 NLDPKDPAYSE 313 (335)
Q Consensus 303 ~~~~~~~~fd~ 313 (335)
+..| ...||.
T Consensus 100 ~~~P-~~~FDL 109 (201)
T PF05401_consen 100 EFWP-EGRFDL 109 (201)
T ss_dssp T----SS-EEE
T ss_pred CCCC-CCCeeE
Confidence 8654 456886
No 176
>PLN02672 methionine S-methyltransferase
Probab=98.12 E-value=1.1e-05 Score=86.58 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----------------CcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----------------ANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~----------------~ni~~~~~D~~~~~ 305 (335)
+.+|||+|||+|..+..++...+ .++|+|+|+|+..++.+++|+++.++ .+|+++++|..+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999998864 47999999999999999999998653 36999999987654
Q ss_pred CC-CCCCceEEEEEEeccccccc
Q 019802 306 PK-DPAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 306 ~~-~~~fd~V~~IllD~~cs~~g 327 (335)
.. ...| |.|+.+||.-..+
T Consensus 198 ~~~~~~f---DlIVSNPPYI~~~ 217 (1082)
T PLN02672 198 RDNNIEL---DRIVGCIPQILNP 217 (1082)
T ss_pred cccCCce---EEEEECCCcCCCc
Confidence 22 1235 4688899976544
No 177
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.11 E-value=2e-05 Score=74.21 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=58.3
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCceE
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
.+++.+|.+|||+|||+|..+..++.. +...|+++|+|+.++..++..-+..+ ..++.+...|+.++++. ..||.|
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEE
Confidence 456788999999999999999888765 23589999999999877544333322 24578888998888754 368875
Q ss_pred EE
Q 019802 315 SL 316 (335)
Q Consensus 315 ~~ 316 (335)
.+
T Consensus 193 ~s 194 (314)
T TIGR00452 193 FS 194 (314)
T ss_pred EE
Confidence 43
No 178
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.08 E-value=3e-05 Score=73.90 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=81.1
Q ss_pred cccccceEEecCch------HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC------------------------
Q 019802 216 PLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG------------------------ 265 (335)
Q Consensus 216 ~~~~~g~~~iQd~~------s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~------------------------ 265 (335)
++++.|+-.-+-.+ +.-+..+.+.++++.++|--||+|...+..|.+..+
T Consensus 160 sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~ 239 (381)
T COG0116 160 SLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK 239 (381)
T ss_pred chhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence 45555655444443 333445667888999999999999999988866432
Q ss_pred -------Ce-------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEEEecccc
Q 019802 266 -------KG-------KIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 266 -------~g-------~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~IllD~~cs 324 (335)
.+ .++++|+++.+++.++.|+++.|+.. |++.++|+..+......++ .|+++||.-
T Consensus 240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~g---vvI~NPPYG 310 (381)
T COG0116 240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYG---VVISNPPYG 310 (381)
T ss_pred HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCC---EEEeCCCcc
Confidence 11 47899999999999999999999965 9999999999887643454 599999963
No 179
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.08 E-value=2.3e-05 Score=70.39 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCC
Q 019802 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDP 309 (335)
Q Consensus 231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~ 309 (335)
.++...+.+.++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++...+. ++.+...|+..++. ...
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCC
Confidence 45555566678999999999999999988875 35799999999999999999988777 57888888877652 335
Q ss_pred CCceE
Q 019802 310 AYSEV 314 (335)
Q Consensus 310 ~fd~V 314 (335)
.||.|
T Consensus 114 ~fD~I 118 (233)
T PRK05134 114 QFDVV 118 (233)
T ss_pred CccEE
Confidence 67764
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=5.4e-05 Score=66.07 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=83.4
Q ss_pred ccCCCCCeEEeCCCCCCCCCcccccceEEecCchH-HHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEE-EE
Q 019802 196 KDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS-SMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VA 271 (335)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s-~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i-~a 271 (335)
+..++|..++-. +....|.+..+-..+--+.- ..+.+.|+ .+||...||+|+|+|..|..++.+++..|.+ ++
T Consensus 37 R~dy~p~~~~~n---~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~G 113 (237)
T KOG1661|consen 37 RSDYAPRSERTN---PYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHG 113 (237)
T ss_pred hhhccccccccC---CCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccc
Confidence 344455544422 22334444443444432221 12234555 7899999999999999999999888877765 99
Q ss_pred EeCCHHHHHHHHHHHHHhC----------CCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 272 CELNKERVRRLKDTIKLSG----------AANIEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 272 ~D~~~~rl~~~~~~~~~~g----------~~ni~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
+|..++-++..++|+...- ..++.++.+|....-++...||+ |.|=
T Consensus 114 IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDa---IhvG 169 (237)
T KOG1661|consen 114 IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDA---IHVG 169 (237)
T ss_pred hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcce---EEEc
Confidence 9999999999999987643 23578899999999888888987 5554
No 181
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.05 E-value=1.6e-05 Score=73.16 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCCCch----HHHHHHHHcCC----CeEEEEEeCCHHHHHHHHHHHH------HhC---------------
Q 019802 240 KPGWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDTIK------LSG--------------- 290 (335)
Q Consensus 240 ~~g~~VLD~cagpG~----kt~~la~~~~~----~g~i~a~D~~~~rl~~~~~~~~------~~g--------------- 290 (335)
.++.+|||+|||+|. .+..+++.+.. +.+|+|+|+|+.+++.+++..- ...
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 346799999999996 45556665432 5799999999999999988531 100
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCceEEE
Q 019802 291 -----A-ANIEVLHGDFLNLDPKDPAYSEVSL 316 (335)
Q Consensus 291 -----~-~ni~~~~~D~~~~~~~~~~fd~V~~ 316 (335)
+ .+|.+.++|+.+.++..+.||.|.+
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~c 209 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFC 209 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEe
Confidence 1 2589999999998776778987544
No 182
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.05 E-value=2.4e-05 Score=69.77 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V 314 (335)
..+.+|||+|||+|..+..++.. ...++++|+++.+++.+++++...+..++.+.+.|+.+++.. ..+||.|
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEE
Confidence 35789999999999999988775 246999999999999999999988876789999998877644 2567753
No 183
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.03 E-value=1.4e-05 Score=69.28 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-C-CCCCCCCceE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-L-DPKDPAYSEV 314 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~-~-~~~~~~fd~V 314 (335)
.+||.+|||+|||.|..-.+|.+. .+...+++|+++..+..+.++ | +.++++|+.+ + .+++++||.|
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhhCCCCCccEE
Confidence 467999999999999999999886 357899999999998876655 5 4589999876 3 2578899963
No 184
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.02 E-value=4e-05 Score=68.53 Aligned_cols=83 Identities=20% Similarity=0.204 Sum_probs=58.6
Q ss_pred chHHHHHHH--cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH------------HhCCCc
Q 019802 228 KASSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK------------LSGAAN 293 (335)
Q Consensus 228 ~~s~l~~~~--l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~------------~~g~~n 293 (335)
+...++... +.+.++.+|||+|||.|.-+.+||++ ...|+|+|+|+..++.+.+... +....+
T Consensus 22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCc
Confidence 444444432 24457889999999999999999985 4689999999999998642110 111246
Q ss_pred EEEEeccCCCCCCCC-CCCce
Q 019802 294 IEVLHGDFLNLDPKD-PAYSE 313 (335)
Q Consensus 294 i~~~~~D~~~~~~~~-~~fd~ 313 (335)
|++.++|+.++++.+ ..||.
T Consensus 99 v~~~~~D~~~l~~~~~~~fd~ 119 (218)
T PRK13255 99 ITIYCGDFFALTAADLADVDA 119 (218)
T ss_pred eEEEECcccCCCcccCCCeeE
Confidence 889999999986543 35663
No 185
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.01 E-value=5.6e-06 Score=70.83 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
.+.+.|+|||+|-.+...|+. .-+|+|++.++.+.+.+++|++--|..|++++++|+.++++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence 378999999999999888876 35899999999999999999988899999999999999885
No 186
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.01 E-value=2.3e-05 Score=68.16 Aligned_cols=69 Identities=26% Similarity=0.306 Sum_probs=57.8
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
+|+|+|+|.|--+..+|-.. ++.+++.+|...+|+.-+++-...+|++|+++++..+++ ......||.|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v 119 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVV 119 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEE
Confidence 89999999999999998775 568999999999999999999999999999999999998 3334557653
No 187
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.01 E-value=3.5e-05 Score=70.84 Aligned_cols=96 Identities=24% Similarity=0.378 Sum_probs=73.2
Q ss_pred EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
|.+-..-...++..+++.+++.|||+|+|+|..|..|++.. .+++++|+++..++.+++.+. ..+|++++++|+.
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l 86 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFL 86 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TT
T ss_pred eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchh
Confidence 33333345666778888899999999999999999999884 689999999999999999877 4568999999999
Q ss_pred CCCCCCCCCceEEEEEEeccc
Q 019802 303 NLDPKDPAYSEVSLIFCIFTW 323 (335)
Q Consensus 303 ~~~~~~~~fd~V~~IllD~~c 323 (335)
+++....--+.-..|+-+.|-
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG
T ss_pred ccccHHhhcCCceEEEEEecc
Confidence 988654111223345556665
No 188
>PRK00811 spermidine synthase; Provisional
Probab=97.96 E-value=2.5e-05 Score=72.63 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCC-CCCCCce
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDP-KDPAYSE 313 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni~~~~~D~~~~~~-~~~~fd~ 313 (335)
..+.+|||+|||.|+.+..++.. .+..+|+++|+++..++.+++.+...+ -++++++.+|+..+-. ..+.||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD- 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD- 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc-
Confidence 34679999999999999998865 344689999999999999999987653 2469999999987543 344576
Q ss_pred EEEEEEec
Q 019802 314 VSLIFCIF 321 (335)
Q Consensus 314 V~~IllD~ 321 (335)
.|++|.
T Consensus 153 --vIi~D~ 158 (283)
T PRK00811 153 --VIIVDS 158 (283)
T ss_pred --EEEECC
Confidence 478885
No 189
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=3.9e-05 Score=68.03 Aligned_cols=79 Identities=22% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIF 321 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~ 321 (335)
+.+|+|+|+|+|--+.-+|- +.++.+|+-+|...+|+.-+++-.+.+|++|++++++.++++......||. |..-+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~---vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDV---VTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcE---EEeeh
Confidence 68999999999999999984 456788999999999999999999999999999999999998764332665 44444
Q ss_pred ccc
Q 019802 322 TWM 324 (335)
Q Consensus 322 ~cs 324 (335)
.++
T Consensus 144 va~ 146 (215)
T COG0357 144 VAS 146 (215)
T ss_pred ccc
Confidence 444
No 190
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.92 E-value=5.6e-05 Score=68.40 Aligned_cols=76 Identities=32% Similarity=0.476 Sum_probs=63.7
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAY 311 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~f 311 (335)
++.-.+.++++.||++|-|||..|..|.+. ..+|+|+|+++.++..+.++.+..... ...++++|+...+. +.|
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~f 124 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRF 124 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--ccc
Confidence 344567899999999999999999999987 468999999999999999999865543 38899999988764 347
Q ss_pred ce
Q 019802 312 SE 313 (335)
Q Consensus 312 d~ 313 (335)
|.
T Consensus 125 d~ 126 (315)
T KOG0820|consen 125 DG 126 (315)
T ss_pred ce
Confidence 65
No 191
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.90 E-value=8.4e-05 Score=77.55 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=68.4
Q ss_pred HcCC-CCCCEEEEEcCCCchHHHHHHHHcC-----------------------------------------CCeEEEEEe
Q 019802 236 ALAP-KPGWKVLDACSAPGNKTVHLAALMK-----------------------------------------GKGKIVACE 273 (335)
Q Consensus 236 ~l~~-~~g~~VLD~cagpG~kt~~la~~~~-----------------------------------------~~g~i~a~D 273 (335)
+.+. ++++.++|-+||+|...+..|.... ...+|+++|
T Consensus 184 ~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~D 263 (702)
T PRK11783 184 RSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSD 263 (702)
T ss_pred HcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEE
Confidence 3444 5789999999999999988775311 123799999
Q ss_pred CCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC--CCCceEEEEEEeccc
Q 019802 274 LNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD--PAYSEVSLIFCIFTW 323 (335)
Q Consensus 274 ~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~--~~fd~V~~IllD~~c 323 (335)
+++.+++.+++|++..|+.+ |.+.++|+.+++... +.|| .|+.|||.
T Consensus 264 id~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d---~IvtNPPY 313 (702)
T PRK11783 264 IDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTG---LVISNPPY 313 (702)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCC---EEEECCCC
Confidence 99999999999999999965 899999999886543 3455 59999997
No 192
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.89 E-value=5.1e-05 Score=66.43 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CC-CCCCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LD-PKDPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~-~~-~~~~~fd~V 314 (335)
.++++|||+|||+|..+..+++.. ...++++|+++.+++.++++ +++++++|+.+ ++ ..+++||.|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEE
Confidence 467899999999999998887653 35789999999999887542 46788888875 33 445678863
No 193
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.87 E-value=2.5e-05 Score=70.38 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEeccCCCCCCCCCCCce
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA------NIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~------ni~~~~~D~~~~~~~~~~fd~ 313 (335)
..|.+|||+|||.|-.+.+||.+ ...|+++|+++.+++.+++-....... .+++.+.|++.... .||.
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~---~fDa 161 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG---KFDA 161 (282)
T ss_pred cCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc---ccce
Confidence 34788999999999999999987 378999999999999999984322221 24566666666543 3886
Q ss_pred EE
Q 019802 314 VS 315 (335)
Q Consensus 314 V~ 315 (335)
|.
T Consensus 162 Vv 163 (282)
T KOG1270|consen 162 VV 163 (282)
T ss_pred ee
Confidence 43
No 194
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=8.6e-05 Score=64.44 Aligned_cols=91 Identities=26% Similarity=0.311 Sum_probs=75.5
Q ss_pred hHHHHHHHc------CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 229 ASSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 229 ~s~l~~~~l------~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
-|.+.+..+ ..++|++||=+||++|....|++...+ +|.|+|++.+++..+.+-..+++ -+||-.+.+||.
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~ 134 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDAR 134 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccC
Confidence 455555544 356899999999999999999999987 79999999999999998888886 458999999998
Q ss_pred CCCCCCCCCceEEEEEEecc
Q 019802 303 NLDPKDPAYSEVSLIFCIFT 322 (335)
Q Consensus 303 ~~~~~~~~fd~V~~IllD~~ 322 (335)
.+.....-.+.||+|+.|..
T Consensus 135 ~P~~Y~~~Ve~VDviy~DVA 154 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQDVA 154 (231)
T ss_pred CcHHhhhhcccccEEEEecC
Confidence 87755444578999999964
No 195
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=8.2e-05 Score=63.52 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
....++++|||+|..++.+++...++....|.|++++.++.-++.++..++ ++.+++.|...--.. ..||.++++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~----~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN----ESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc----CCccEEEEC
Confidence 367899999999999999999998888999999999999999999998887 478888887653322 567789999
Q ss_pred ccccc
Q 019802 321 FTWMI 325 (335)
Q Consensus 321 ~~cs~ 325 (335)
||.-.
T Consensus 118 PPYVp 122 (209)
T KOG3191|consen 118 PPYVP 122 (209)
T ss_pred CCcCc
Confidence 88653
No 196
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.83 E-value=5.2e-05 Score=63.43 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=54.1
Q ss_pred hHHHHHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019802 229 ASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (335)
Q Consensus 229 ~s~l~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~ 307 (335)
-+.++..+.. ..++.+|||+|||.|..+..++.. ..+++++|+++.+++. .++.....+.......
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc
Confidence 3445555664 577899999999999999999765 2499999999999988 3444555545455455
Q ss_pred CCCCceEEE
Q 019802 308 DPAYSEVSL 316 (335)
Q Consensus 308 ~~~fd~V~~ 316 (335)
++.||.|.+
T Consensus 76 ~~~fD~i~~ 84 (161)
T PF13489_consen 76 DGSFDLIIC 84 (161)
T ss_dssp SSSEEEEEE
T ss_pred ccchhhHhh
Confidence 567876533
No 197
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.78 E-value=2.9e-05 Score=69.77 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHH-HHHH
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR-LKDT 285 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~-~~~~ 285 (335)
.+|..|||+|||||+.|..+++. +..+|+|+|+++.++.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 46789999999999999999986 35799999999988875 4443
No 198
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.78 E-value=8.2e-05 Score=70.05 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
+.+|..+||+||+|||.|-.+.++ +.+|+|+|..+ +...+. .-.+|+...+|...+.+... .|+.++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~~~---~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPPRK---NVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCCCC---CCCEEE
Confidence 468999999999999999999887 35999999543 222222 33468999999888765433 456799
Q ss_pred Eecccccccc
Q 019802 319 CIFTWMIIMF 328 (335)
Q Consensus 319 lD~~cs~~g~ 328 (335)
||.-|...-+
T Consensus 276 cDmve~P~rv 285 (357)
T PRK11760 276 CDMVEKPARV 285 (357)
T ss_pred EecccCHHHH
Confidence 9988875443
No 199
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.75 E-value=5.9e-06 Score=71.46 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----C---CCCc
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----D---PAYS 312 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~----~---~~fd 312 (335)
.++..|||+||||||.|..+.+..+..++|+|+|+.+. ....++..+++|..+.... . ....
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhcccccc
Confidence 35689999999999999999998756799999999876 2335677778877553211 0 1113
Q ss_pred eEEEEEEec--ccccc
Q 019802 313 EVSLIFCIF--TWMII 326 (335)
Q Consensus 313 ~V~~IllD~--~cs~~ 326 (335)
.++.|++|. .++|.
T Consensus 91 ~~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGD 106 (181)
T ss_dssp SESEEEE-------SS
T ss_pred CcceeccccccCCCCc
Confidence 567799997 44443
No 200
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=0.00012 Score=60.43 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=51.5
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
.|||+||+.|..+..++... +.++|+++|.++..++.++++++..++.++.+++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999998874 456999999999999999999999988888888766644
No 201
>PRK04148 hypothetical protein; Provisional
Probab=97.72 E-value=0.00026 Score=58.09 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHHcCCCCCCEEEEEcCCCch-HHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CC
Q 019802 233 VAAALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PA 310 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~-kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-~~ 310 (335)
+...+....+.+|||+|||.|. .+..|++. +..|+|+|+++.+++.++++ + +.++..|..+.++.. ..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHHHhc
Confidence 4444444567899999999997 66666654 36999999999988877665 3 578999998877642 33
Q ss_pred CceEEEE
Q 019802 311 YSEVSLI 317 (335)
Q Consensus 311 fd~V~~I 317 (335)
+|.|..|
T Consensus 78 a~liysi 84 (134)
T PRK04148 78 AKLIYSI 84 (134)
T ss_pred CCEEEEe
Confidence 5554433
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.64 E-value=0.00015 Score=72.85 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSLIF 318 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~Il 318 (335)
.+..+||+|||.|..+.++|... ++..++++|++...+..+.+.+.+.|++|+.+++.|+..+. ..++++| .|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~---~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLD---GIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCccccc---EEE
Confidence 46789999999999999999984 56899999999999999999999999999999999886443 2344455 577
Q ss_pred Eeccc
Q 019802 319 CIFTW 323 (335)
Q Consensus 319 lD~~c 323 (335)
+.||+
T Consensus 423 i~FPD 427 (506)
T PRK01544 423 ILFPD 427 (506)
T ss_pred EECCC
Confidence 77664
No 203
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.63 E-value=0.00018 Score=59.72 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHc---CCCeEEEEEeCCHHHHHHHHHHHHHhC--C-CcEEEEeccCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSG--A-ANIEVLHGDFLN 303 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~---~~~g~i~a~D~~~~rl~~~~~~~~~~g--~-~ni~~~~~D~~~ 303 (335)
.+...|+|+|||-|..+..++.++ ..+.+|+++|.++..++.+.++.++.+ . .++.+..++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 678899999999999999999944 345799999999999999999999988 4 445555555443
No 204
>PLN02366 spermidine synthase
Probab=97.62 E-value=0.00023 Score=66.91 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCC--CCCCCce
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDP--KDPAYSE 313 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g--~--~ni~~~~~D~~~~~~--~~~~fd~ 313 (335)
....+||++|+|.|+....+++. .+..+|+.+|+++..++.+++.+...+ + ++++++.+|+..+-. ..+.||.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45679999999999999998865 445689999999999999999987642 2 469999999876432 1346775
Q ss_pred EEEEEEeccc
Q 019802 314 VSLIFCIFTW 323 (335)
Q Consensus 314 V~~IllD~~c 323 (335)
|++|.+.
T Consensus 169 ---Ii~D~~d 175 (308)
T PLN02366 169 ---IIVDSSD 175 (308)
T ss_pred ---EEEcCCC
Confidence 7888643
No 205
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.60 E-value=0.00028 Score=63.29 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeccCCCCC
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI------------KLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~------------~~~g~~ni~~~~~D~~~~~ 305 (335)
.+.++.+||+.+||.|--..+||++ +..|+++|+|+..++.+.+.. .+..-.+|++.++|+.+++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3446789999999999999999987 467999999999999875521 1122236999999999987
Q ss_pred CCC---CCCce
Q 019802 306 PKD---PAYSE 313 (335)
Q Consensus 306 ~~~---~~fd~ 313 (335)
+.. ..||.
T Consensus 117 ~~~~~~~~fD~ 127 (226)
T PRK13256 117 KIANNLPVFDI 127 (226)
T ss_pred ccccccCCcCe
Confidence 521 45775
No 206
>PRK01581 speE spermidine synthase; Validated
Probab=97.60 E-value=0.00019 Score=68.43 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH--H---HHh--CCCcEEEEeccCCCCC-CCCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--I---KLS--GAANIEVLHGDFLNLD-PKDPAY 311 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~--~---~~~--g~~ni~~~~~D~~~~~-~~~~~f 311 (335)
....+||++|+|.|+....+.+. .+..+|+++|+++.+++.+++. + .+. .-++++++.+|+.++- .....|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34569999999999977766654 4457999999999999999962 1 222 2357999999998853 334456
Q ss_pred ceEEEEEEeccc
Q 019802 312 SEVSLIFCIFTW 323 (335)
Q Consensus 312 d~V~~IllD~~c 323 (335)
| .|++|++-
T Consensus 228 D---VIIvDl~D 236 (374)
T PRK01581 228 D---VIIIDFPD 236 (374)
T ss_pred c---EEEEcCCC
Confidence 6 59999754
No 207
>PRK03612 spermidine synthase; Provisional
Probab=97.59 E-value=0.00016 Score=72.89 Aligned_cols=81 Identities=10% Similarity=0.083 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH--HHHh-----CCCcEEEEeccCCCCC-CCCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLS-----GAANIEVLHGDFLNLD-PKDPAY 311 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~--~~~~-----g~~ni~~~~~D~~~~~-~~~~~f 311 (335)
+++.+|||+|+|.|..+..+++. ++..+|+++|+++++++.++++ +... .-++++++++|+.+.- ...++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999988864 3336999999999999999994 3332 2256999999998743 233567
Q ss_pred ceEEEEEEecccc
Q 019802 312 SEVSLIFCIFTWM 324 (335)
Q Consensus 312 d~V~~IllD~~cs 324 (335)
|. |++|++..
T Consensus 375 Dv---Ii~D~~~~ 384 (521)
T PRK03612 375 DV---IIVDLPDP 384 (521)
T ss_pred CE---EEEeCCCC
Confidence 74 88897653
No 208
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.58 E-value=0.00029 Score=65.02 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCC-CCCCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLD-PKDPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g----~~ni~~~~~D~~~~~-~~~~~fd~V 314 (335)
..+.+||++|+|.|+.+..++... +..+++++|+++..++.+++.+...+ ..+++++.+|+...- .....||.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv- 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV- 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE-
Confidence 344599999999999988887653 34689999999999999999887653 246888889986632 22346774
Q ss_pred EEEEEecc
Q 019802 315 SLIFCIFT 322 (335)
Q Consensus 315 ~~IllD~~ 322 (335)
|++|++
T Consensus 149 --Ii~D~~ 154 (270)
T TIGR00417 149 --IIVDST 154 (270)
T ss_pred --EEEeCC
Confidence 788875
No 209
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.57 E-value=0.00023 Score=63.40 Aligned_cols=95 Identities=25% Similarity=0.234 Sum_probs=76.4
Q ss_pred hHHHHHHHc------CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 229 ASSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 229 ~s~l~~~~l------~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
-|.|++-++ ..+||.+||=+||+.|..-.|++..++++|.|+|+|.|..-=+.+-..+++. +||..+..|++
T Consensus 138 rSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDAr 215 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDAR 215 (317)
T ss_pred HHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCC
Confidence 456665544 3689999999999999999999999999999999999987777776666643 58999999998
Q ss_pred CCCCCCCCCceEEEEEEeccccc
Q 019802 303 NLDPKDPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 303 ~~~~~~~~fd~V~~IllD~~cs~ 325 (335)
.....-.....||+||-|.+.+.
T Consensus 216 hP~KYRmlVgmVDvIFaDvaqpd 238 (317)
T KOG1596|consen 216 HPAKYRMLVGMVDVIFADVAQPD 238 (317)
T ss_pred CchheeeeeeeEEEEeccCCCch
Confidence 86654444468999999977653
No 210
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.54 E-value=0.00036 Score=69.81 Aligned_cols=112 Identities=20% Similarity=0.271 Sum_probs=87.8
Q ss_pred ccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC---CeEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 019802 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAA-NI 294 (335)
Q Consensus 219 ~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~---~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni 294 (335)
..|.|+--..-+.++++++.|++..+|+|-|||+||.-......++. ...+++.|+++.....++-|+--.|+. ++
T Consensus 164 ~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 164 EAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA 243 (489)
T ss_pred CCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 33666666667889999999999999999999999999999888753 378999999999999999999998886 46
Q ss_pred EEEeccCCCCCCCCCCC--ceEEEEEEecccccccccc
Q 019802 295 EVLHGDFLNLDPKDPAY--SEVSLIFCIFTWMIIMFHG 330 (335)
Q Consensus 295 ~~~~~D~~~~~~~~~~f--d~V~~IllD~~cs~~g~~~ 330 (335)
.+.++|-..-+.....+ ..+|.|+-+||.|+.+..+
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~ 281 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGG 281 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCcccccc
Confidence 67777765554332112 2355799999999766543
No 211
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.52 E-value=0.0003 Score=71.08 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCC-------CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCCCc
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPAYS 312 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~-------~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~~fd 312 (335)
+.+|||.|||+|+....++..+.. .-.++++|+++..+..++.++...+.-.+.+.+.|...... .....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 458999999999999999887631 25789999999999999999988773345666666543221 111123
Q ss_pred eEEEEEEeccccccc
Q 019802 313 EVSLIFCIFTWMIIM 327 (335)
Q Consensus 313 ~V~~IllD~~cs~~g 327 (335)
..|.|+.+||.....
T Consensus 112 ~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 112 LFDIVITNPPYGRLK 126 (524)
T ss_pred cccEEEeCCCccccC
Confidence 445699999998753
No 212
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.51 E-value=0.00036 Score=68.86 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCchHHHHHHHH---cCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~---~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
+..|+|+|||+|......+.. .+...+|+|+|.++.....+++.+++.|. +.|+++++|.+++..+. +||.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe----kvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE----KVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-----EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC----ceeEE
Confidence 568999999999998655443 34567999999999999999988888887 56999999999998754 56666
Q ss_pred EEe
Q 019802 318 FCI 320 (335)
Q Consensus 318 llD 320 (335)
+=.
T Consensus 263 VSE 265 (448)
T PF05185_consen 263 VSE 265 (448)
T ss_dssp EE-
T ss_pred EEe
Confidence 655
No 213
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.45 E-value=0.00075 Score=59.89 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=78.2
Q ss_pred EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019802 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 302 (335)
Q Consensus 224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~ 302 (335)
.+-+...+++..++..-...++||+|.=+|.-+..+|..++.+|+|+++|+++.-.+...+..+..|+. .|+++++++.
T Consensus 56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence 344556777777777778899999999999999999999999999999999999999999999999985 4999999986
Q ss_pred CCCC------CCCCCceEEEEEEec
Q 019802 303 NLDP------KDPAYSEVSLIFCIF 321 (335)
Q Consensus 303 ~~~~------~~~~fd~V~~IllD~ 321 (335)
+.-. ..++|| -+|+|+
T Consensus 136 esLd~l~~~~~~~tfD---faFvDa 157 (237)
T KOG1663|consen 136 ESLDELLADGESGTFD---FAFVDA 157 (237)
T ss_pred hhHHHHHhcCCCCcee---EEEEcc
Confidence 6321 234565 488875
No 214
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.44 E-value=0.00017 Score=67.36 Aligned_cols=91 Identities=24% Similarity=0.341 Sum_probs=73.5
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHH-------HHHHHHHHhCCCc--EEEEec
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-------RLKDTIKLSGAAN--IEVLHG 299 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~-------~~~~~~~~~g~~n--i~~~~~ 299 (335)
-|-+.+....++||+.|.|=..|+|+.-...|.. ++.|++.||+-.+++ -++.|++.+|+.. +.++.+
T Consensus 196 LSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 3556667777899999999999999998888776 479999999988887 4789999999754 778999
Q ss_pred cCCCCCCCCCCCceEEEEEEecccc
Q 019802 300 DFLNLDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 300 D~~~~~~~~~~fd~V~~IllD~~cs 324 (335)
|+.+.+...+ -..|+|+||||.-
T Consensus 273 D~sn~~~rsn--~~fDaIvcDPPYG 295 (421)
T KOG2671|consen 273 DFSNPPLRSN--LKFDAIVCDPPYG 295 (421)
T ss_pred cccCcchhhc--ceeeEEEeCCCcc
Confidence 9998776432 2345799999963
No 215
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.41 E-value=6.2e-05 Score=66.71 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=67.1
Q ss_pred HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCC--CCCCC
Q 019802 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLD--PKDPA 310 (335)
Q Consensus 235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~--~ni~~~~~D~~~~~--~~~~~ 310 (335)
....++.|++|||.|.|-|..++..+++ +...|+.++.+++-|++++-|==.-++ .+|+++.+|+-+.- +.|.+
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 3456778999999999999999988876 345899999999999887665322122 25899999997754 45677
Q ss_pred CceEEEEEEecccccccc
Q 019802 311 YSEVSLIFCIFTWMIIMF 328 (335)
Q Consensus 311 fd~V~~IllD~~cs~~g~ 328 (335)
|| +|+=|||--+...
T Consensus 206 fD---aIiHDPPRfS~Ag 220 (287)
T COG2521 206 FD---AIIHDPPRFSLAG 220 (287)
T ss_pred cc---eEeeCCCccchhh
Confidence 87 4888988655544
No 216
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.35 E-value=0.00076 Score=63.37 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
-.+..|||+|||+|-.+...|+. +..+|+|+|.|.-. +.+.+.++..|+.+ |+++++..+++..+ ..+||.|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEe
Confidence 46889999999999999988876 36799999988654 99999999999987 88999999887554 45566665
Q ss_pred Ee
Q 019802 319 CI 320 (335)
Q Consensus 319 lD 320 (335)
-.
T Consensus 133 SE 134 (346)
T KOG1499|consen 133 SE 134 (346)
T ss_pred eh
Confidence 43
No 217
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.32 E-value=0.0013 Score=62.51 Aligned_cols=87 Identities=20% Similarity=0.324 Sum_probs=57.5
Q ss_pred HHHHHHHcCC----CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----------CcEE
Q 019802 230 SSMVAAALAP----KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----------ANIE 295 (335)
Q Consensus 230 s~l~~~~l~~----~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~----------~ni~ 295 (335)
|.|+...+.. .++.+|||+|||-||-..-.... +-..++++|++..-++.++++.+.+.- -...
T Consensus 47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~ 124 (331)
T PF03291_consen 47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAE 124 (331)
T ss_dssp HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEE
T ss_pred HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhh
Confidence 4555554431 27899999999999987766553 457999999999999999999843221 1356
Q ss_pred EEeccCCCC------CCCCCCCceEEEEE
Q 019802 296 VLHGDFLNL------DPKDPAYSEVSLIF 318 (335)
Q Consensus 296 ~~~~D~~~~------~~~~~~fd~V~~Il 318 (335)
++.+|+..- ++....||.|.+-+
T Consensus 125 f~~~D~f~~~l~~~~~~~~~~FDvVScQF 153 (331)
T PF03291_consen 125 FIAADCFSESLREKLPPRSRKFDVVSCQF 153 (331)
T ss_dssp EEESTTCCSHHHCTSSSTTS-EEEEEEES
T ss_pred eeccccccchhhhhccccCCCcceeehHH
Confidence 788888642 22335788877765
No 218
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00089 Score=58.50 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCC-CCCCCCceEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLD-PKDPAYSEVSLIF 318 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~-~~~~D~~~~~-~~~~~fd~V~~Il 318 (335)
.-..||++|||||..--.. . +.+..+|+++|.+++|-+.+.+.++..-..++. ++++++++++ ..+.++|.|.+-|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy-~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFY-P-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred CccceEEecccCCCCcccc-c-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3346899999999874322 1 225679999999999999999998887666777 9999999998 4778888755544
Q ss_pred Eeccccc
Q 019802 319 CIFTWMI 325 (335)
Q Consensus 319 lD~~cs~ 325 (335)
+ -||.
T Consensus 154 v--LCSv 158 (252)
T KOG4300|consen 154 V--LCSV 158 (252)
T ss_pred E--Eecc
Confidence 4 3553
No 219
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.18 E-value=0.00065 Score=62.93 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=56.2
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEeccc
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTW 323 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~c 323 (335)
+|+|++||.||.+.-+.+. +--.++++|+++..++..+.|.... ++++|..++...+. ...+|.|+..|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~-~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDF-IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhc-CCCCCEEEeCCCC
Confidence 6899999999998877654 2446889999999999999987421 56788888765431 2245679999999
Q ss_pred ccc
Q 019802 324 MII 326 (335)
Q Consensus 324 s~~ 326 (335)
-+-
T Consensus 73 q~f 75 (275)
T cd00315 73 QPF 75 (275)
T ss_pred hhh
Confidence 743
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.17 E-value=0.00051 Score=60.78 Aligned_cols=91 Identities=25% Similarity=0.292 Sum_probs=57.2
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEeccCCCC
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-------LSGA--ANIEVLHGDFLNL 304 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~-------~~g~--~ni~~~~~D~~~~ 304 (335)
...+++.+++..+|+|||.|...++.|... +-.+.+++|+.+...+.++.+.+ ..|. ..+.+.++|+.+.
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 356788899999999999999999888665 34579999999998877765433 3444 4588889998775
Q ss_pred CCCCCCCceEEEEEEeccccc
Q 019802 305 DPKDPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 305 ~~~~~~fd~V~~IllD~~cs~ 325 (335)
+....-+...+.||++-.|-.
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~ 134 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD 134 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-
T ss_pred HhHhhhhcCCCEEEEeccccC
Confidence 532222345667999877644
No 221
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=97.15 E-value=0.00025 Score=62.20 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=66.2
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC------
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP------ 306 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~------ 306 (335)
+.+.+.|.+|...+||.-|.||.|..+.+. .++.+++|+|.++-.-+++......+-.+.+..+.+.+.+++.
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 467889999999999999999999999987 4568999999999888777666543322233334444444431
Q ss_pred -CCCCCceEEEEEEeccccccc
Q 019802 307 -KDPAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 307 -~~~~fd~V~~IllD~~cs~~g 327 (335)
.+.++ |.||+|++||+--
T Consensus 114 l~~~~v---DGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 114 LLDVGV---DGILMDLGCSSMQ 132 (303)
T ss_pred CCcCCc---ceEEeecCccccc
Confidence 23444 5699999999643
No 222
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.13 E-value=0.0015 Score=55.29 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
++.++..+++..|--||++|.|+|-.|-.+.+++-....++++|.|.+=...+.+... .++++++|+.++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~ 107 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLR 107 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHH
Confidence 4555667788999999999999999999999988777899999999999988877644 4668999998887
No 223
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.13 E-value=0.0011 Score=59.61 Aligned_cols=86 Identities=29% Similarity=0.389 Sum_probs=58.0
Q ss_pred HHHHHHHcCCCCCC--EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---------CcEEEEe
Q 019802 230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------ANIEVLH 298 (335)
Q Consensus 230 s~l~~~~l~~~~g~--~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---------~ni~~~~ 298 (335)
.+.++.+++.++|. +|||+.+|-|.-++.+|.. +++|+++|.|+-....++.-+++..- .+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34567777777774 8999999999999999976 36899999999999888877766422 2599999
Q ss_pred ccCCCCCC-CCCCCceEEEEEEec
Q 019802 299 GDFLNLDP-KDPAYSEVSLIFCIF 321 (335)
Q Consensus 299 ~D~~~~~~-~~~~fd~V~~IllD~ 321 (335)
+|+.++-. .+.+|| +|.+||
T Consensus 139 ~d~~~~L~~~~~s~D---VVY~DP 159 (234)
T PF04445_consen 139 GDALEYLRQPDNSFD---VVYFDP 159 (234)
T ss_dssp S-CCCHCCCHSS--S---EEEE--
T ss_pred CCHHHHHhhcCCCCC---EEEECC
Confidence 99988543 345666 599995
No 224
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.12 E-value=0.004 Score=57.84 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=54.3
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCc
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd 312 (335)
...+.+-.|.+|||+|||.|..+..|+.. +...|+++|.+..-+-..+---+-+|.++ +..+-.-.++++. .+.||
T Consensus 108 ~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 108 LPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFD 184 (315)
T ss_pred HhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcC
Confidence 34455678999999999999999999876 45689999998876655444334455443 3333345566666 67798
Q ss_pred eE
Q 019802 313 EV 314 (335)
Q Consensus 313 ~V 314 (335)
.|
T Consensus 185 tV 186 (315)
T PF08003_consen 185 TV 186 (315)
T ss_pred EE
Confidence 64
No 225
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.10 E-value=0.0014 Score=58.85 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=61.4
Q ss_pred CcccccceEEecCchHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 215 HPLIVNGCVFLQGKASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 215 ~~~~~~g~~~iQd~~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
...|.+++.+....-.... .++. --.|.+||-+| -+..+...+.+.+...+|+.+|++++.++.+++.+++.|++
T Consensus 17 ~~~~DQ~~~T~eT~~~Ra~-~~~~~gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~ 93 (243)
T PF01861_consen 17 DVELDQGYATPETTLRRAA-LMAERGDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP 93 (243)
T ss_dssp -GGGT---B-HHHHHHHHH-HHHHTT-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred ccccccccccHHHHHHHHH-HHHhcCcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence 3456777777655433221 1121 23578898665 66666655555566679999999999999999999999997
Q ss_pred cEEEEeccCCCCCCCC--CCCceEEEEEEeccccccccccc
Q 019802 293 NIEVLHGDFLNLDPKD--PAYSEVSLIFCIFTWMIIMFHGF 331 (335)
Q Consensus 293 ni~~~~~D~~~~~~~~--~~fd~V~~IllD~~cs~~g~~~~ 331 (335)
|++.+.|+++.-|.. +.|| +++.|||.+..|+.-|
T Consensus 94 -i~~~~~DlR~~LP~~~~~~fD---~f~TDPPyT~~G~~LF 130 (243)
T PF01861_consen 94 -IEAVHYDLRDPLPEELRGKFD---VFFTDPPYTPEGLKLF 130 (243)
T ss_dssp -EEEE---TTS---TTTSS-BS---EEEE---SSHHHHHHH
T ss_pred -eEEEEecccccCCHHHhcCCC---EEEeCCCCCHHHHHHH
Confidence 999999999865543 5677 4999999999988654
No 226
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.00074 Score=58.04 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCC------CCCCCc
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDP------KDPAYS 312 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~-D~~~~~~------~~~~fd 312 (335)
.|+++|||+|||||..+-..-++.+++|.|.++|+-.- .....+.++++ |+++... ..+. -
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~-r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPN-R 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCC-C
Confidence 57999999999999999999999999999999998421 12233455665 6665432 1111 3
Q ss_pred eEEEEEEecccccccc
Q 019802 313 EVSLIFCIFTWMIIMF 328 (335)
Q Consensus 313 ~V~~IllD~~cs~~g~ 328 (335)
.|++|+-|+.-..+|+
T Consensus 136 ~VdvVlSDMapnaTGv 151 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGV 151 (232)
T ss_pred cccEEEeccCCCCcCc
Confidence 5788998977777776
No 227
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.06 E-value=0.0015 Score=59.26 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC 319 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill 319 (335)
...++||+|||-|+.|.+++.... +|+|.|.|..|..++++ .|.+ ++ |..++...+..||.|.+.=|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg~~---vl--~~~~w~~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KGFT---VL--DIDDWQQTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CCCe---EE--ehhhhhccCCceEEEeehhh
Confidence 356899999999999999999864 59999999998666554 4663 22 33334444556887666543
No 228
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.96 E-value=0.0021 Score=57.52 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCC
Q 019802 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNL 304 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~------------~g~~ni~~~~~D~~~~ 304 (335)
+..+++.+||+-|||.|.-...||++ ...|+++|+|+..++.+.+.... ....+|++.++|+.++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 44678889999999999999999987 46999999999999998432211 1123689999999998
Q ss_pred CCCC-CCCceEEEEEEeccc
Q 019802 305 DPKD-PAYSEVSLIFCIFTW 323 (335)
Q Consensus 305 ~~~~-~~fd~V~~IllD~~c 323 (335)
++.. +.|| ++.|=.|
T Consensus 110 ~~~~~g~fD----~iyDr~~ 125 (218)
T PF05724_consen 110 PPEDVGKFD----LIYDRTF 125 (218)
T ss_dssp GGSCHHSEE----EEEECSS
T ss_pred ChhhcCCce----EEEEecc
Confidence 8754 3677 4456333
No 229
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.94 E-value=0.0015 Score=56.66 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=60.3
Q ss_pred HHHHHHcCCC----CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 231 SMVAAALAPK----PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 231 ~l~~~~l~~~----~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
+..+..++-. .|.+|||+|+|+|--++..+.. +...|++.|+.+.....++-|.+..|+ +|.++..|... +
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~- 139 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S- 139 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C-
Confidence 3445544433 3899999999999999877655 457899999999999999999999997 68888888866 2
Q ss_pred CCCCCce
Q 019802 307 KDPAYSE 313 (335)
Q Consensus 307 ~~~~fd~ 313 (335)
...||.
T Consensus 140 -~~~~Dl 145 (218)
T COG3897 140 -PPAFDL 145 (218)
T ss_pred -CcceeE
Confidence 344764
No 230
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.86 E-value=0.0014 Score=58.61 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=49.4
Q ss_pred HHHHHcCCCCCC-EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC
Q 019802 232 MVAAALAPKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP 309 (335)
Q Consensus 232 l~~~~l~~~~g~-~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~ 309 (335)
+.-.+....++. .++|+|||+|--+..+++... +|+|.|+|+.||+.+++-...--+ ....+...+..++...++
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~ 99 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE 99 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence 334444455555 899999999966667777743 699999999999987764332111 112333334444443455
Q ss_pred CCceE
Q 019802 310 AYSEV 314 (335)
Q Consensus 310 ~fd~V 314 (335)
+.|.|
T Consensus 100 SVDlI 104 (261)
T KOG3010|consen 100 SVDLI 104 (261)
T ss_pred ceeee
Confidence 55543
No 231
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.73 E-value=0.0045 Score=58.42 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCC---CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNL 304 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~---~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~--~~~D~~~~ 304 (335)
.++..++|+|||.|.||..|.+.+.. ....+++|+|...|+.+.+++..-.++.+.+ +++|+.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 46779999999999999998887642 3578999999999999999998445555555 88988663
No 232
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.73 E-value=0.0035 Score=60.60 Aligned_cols=83 Identities=25% Similarity=0.243 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCC-CCCCCceEEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDP-KDPAYSEVSLIF 318 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~~~-~~~~fd~V~~Il 318 (335)
+-+|||.-||+|--++..+.-+++..+|++.|+|+..++.+++|++..|++. +++.+.|+..+-. ....|| .|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD---~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFD---VID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EE---EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCC---EEE
Confidence 4589999999999999999887666799999999999999999999999976 8999999987653 234455 577
Q ss_pred Eeccccccc
Q 019802 319 CIFTWMIIM 327 (335)
Q Consensus 319 lD~~cs~~g 327 (335)
+||..|.+-
T Consensus 127 lDPfGSp~p 135 (377)
T PF02005_consen 127 LDPFGSPAP 135 (377)
T ss_dssp E--SS--HH
T ss_pred eCCCCCccH
Confidence 899888654
No 233
>PLN02823 spermine synthase
Probab=96.71 E-value=0.0069 Score=57.64 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCC-CCCCCceEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDP-KDPAYSEVS 315 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~~~-~~~~fd~V~ 315 (335)
...+||.+|.|.|+.+..+... .+..+|+++|+++..++.+++.+... .-++++++.+|+..+-. ....||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yD--- 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFD--- 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCcc---
Confidence 3468999999999999888764 33468999999999999999987643 23569999999988543 334566
Q ss_pred EEEEecc
Q 019802 316 LIFCIFT 322 (335)
Q Consensus 316 ~IllD~~ 322 (335)
.|++|.+
T Consensus 179 vIi~D~~ 185 (336)
T PLN02823 179 VIIGDLA 185 (336)
T ss_pred EEEecCC
Confidence 5899964
No 234
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.68 E-value=0.0015 Score=58.46 Aligned_cols=102 Identities=16% Similarity=0.270 Sum_probs=69.5
Q ss_pred CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAAN 293 (335)
Q Consensus 215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~n 293 (335)
...|++-.|..++...-+.. +-++.++||++|||-|+...-+.+--++ +-+|+|+|.|+..++.++++-.... ++
T Consensus 48 ~rFfkdR~wL~~Efpel~~~---~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~ 123 (264)
T KOG2361|consen 48 NRFFKDRNWLLREFPELLPV---DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SR 123 (264)
T ss_pred ccccchhHHHHHhhHHhhCc---cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hh
Confidence 34456655555554322211 1122238999999999999988765432 3799999999999999999877544 45
Q ss_pred EEEEeccCCCCC----CCCCCCceEEEEEEe
Q 019802 294 IEVLHGDFLNLD----PKDPAYSEVSLIFCI 320 (335)
Q Consensus 294 i~~~~~D~~~~~----~~~~~fd~V~~IllD 320 (335)
+...+.|..... +..+++|.++.|++-
T Consensus 124 ~~afv~Dlt~~~~~~~~~~~svD~it~IFvL 154 (264)
T KOG2361|consen 124 VEAFVWDLTSPSLKEPPEEGSVDIITLIFVL 154 (264)
T ss_pred hcccceeccchhccCCCCcCccceEEEEEEE
Confidence 666667765543 345688888888874
No 235
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.67 E-value=0.0079 Score=56.03 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=64.1
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CC-----cEEEEeccCC
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AA-----NIEVLHGDFL 302 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~-----ni~~~~~D~~ 302 (335)
-|+|+-... ++++.++|+|||-||-....-.. +-+.++++||.+--++.++++.+.+- .. .+.++.+|..
T Consensus 107 Ks~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 107 KSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 366776655 67999999999999998765433 34689999999998988888766532 11 2678899985
Q ss_pred C------CCCCCCCCceEEEEEE
Q 019802 303 N------LDPKDPAYSEVSLIFC 319 (335)
Q Consensus 303 ~------~~~~~~~fd~V~~Ill 319 (335)
. +++.+++||.|.+-|+
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~ 205 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFA 205 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeee
Confidence 5 3345666998887776
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.64 E-value=0.008 Score=53.19 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=49.7
Q ss_pred EEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019802 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL 304 (335)
Q Consensus 245 VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~ 304 (335)
|.|+||--|.....|.+. +...+++|+|++++=++.+++++++.|+.+ |++..+|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 689999999999999987 344589999999999999999999999855 99999998663
No 237
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.57 E-value=0.0036 Score=55.09 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=43.3
Q ss_pred chHHHHHHHcCCCC---CCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHH
Q 019802 228 KASSMVAAALAPKP---GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIK 287 (335)
Q Consensus 228 ~~s~l~~~~l~~~~---g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~ 287 (335)
.+|-+....+...+ +-.++|-|||.|+..+.+.-+-++. ..|+|.|+++..++.+++|+.
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 35555555555443 3489999999999999888664332 479999999999999988854
No 238
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0029 Score=56.09 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCC----Ce----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---CC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKG----KG----KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---PA 310 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~----~g----~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~---~~ 310 (335)
-.+|+|+||+||..+-.+++.+.. .+ +|+|+|+.+- ..+..|..+++|.+...... ..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 358999999999999999987642 22 3999998753 24556888999998865311 11
Q ss_pred C--ceEEEEEEeccccccccccc
Q 019802 311 Y--SEVSLIFCIFTWMIIMFHGF 331 (335)
Q Consensus 311 f--d~V~~IllD~~cs~~g~~~~ 331 (335)
| ...+.|++|..--.+|+|+.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~ 133 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDL 133 (294)
T ss_pred hCCCCccEEEeCCCCCccccccH
Confidence 2 24556999988888999974
No 239
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.28 E-value=0.017 Score=54.08 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSLIFC 319 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~Ill 319 (335)
.|..|||+|||.|-.+...++. +..+|+|++.| +|.+.++...+...+ +.|.++.+-.+++..+. +||.|+-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE----k~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE----KVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch----hccEEEe
Confidence 4778999999999999877765 45799999987 688888888776655 45889999888877643 3445554
Q ss_pred ec
Q 019802 320 IF 321 (335)
Q Consensus 320 D~ 321 (335)
.|
T Consensus 250 EP 251 (517)
T KOG1500|consen 250 EP 251 (517)
T ss_pred cc
Confidence 43
No 240
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.19 E-value=0.017 Score=49.69 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIEVLHGDF 301 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g---~~ni~~~~~D~ 301 (335)
..+.+||++|||.|--+..++.+. +..+|++.|.++ -++.++.|++..+ -.++.+...|=
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W 106 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW 106 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence 468899999999998888888773 457999999999 9999999999866 24566666554
No 241
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.18 E-value=0.0076 Score=51.05 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred EEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802 270 VACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 270 ~a~D~~~~rl~~~~~~~~~~g---~~ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
+++|+|+.|++.++++.+..+ ..+|+++++|+.+++..+++||.|...
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~ 51 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG 51 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec
Confidence 479999999999988765432 357999999999999888889976543
No 242
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.13 E-value=0.065 Score=50.03 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEeccCC-CC-CCCCCCCceEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLHGDFL-NL-DPKDPAYSEVSLI 317 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~-ni~~~~~D~~-~~-~~~~~~fd~V~~I 317 (335)
.-++||+|+|.-..=-.|+..+. +.+.+|.|+++.-++.+++|+++. ++. .|+++...-. .+ ..-...-+.++-.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45799999999988766766654 589999999999999999999998 775 4777654322 21 1111112456679
Q ss_pred EEeccc
Q 019802 318 FCIFTW 323 (335)
Q Consensus 318 llD~~c 323 (335)
+|+||=
T Consensus 182 mCNPPF 187 (299)
T PF05971_consen 182 MCNPPF 187 (299)
T ss_dssp EE----
T ss_pred ecCCcc
Confidence 998874
No 243
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.12 E-value=0.029 Score=49.38 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDP 306 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~-~~~~D~~~~~~ 306 (335)
.+.+||+++||+|-.+.++|..+. .-.....|.++..+..+...+...|++|+. .+..|+...+.
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 344699999999999999999986 478889999999999999999999998854 56777776643
No 244
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.11 E-value=0.0095 Score=53.41 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~ 288 (335)
.+..+||+||-.|..|.+||..++. ..|+++||++..++.++++++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 3668999999999999999999875 6799999999999999999764
No 245
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.03 E-value=0.033 Score=51.43 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni-~~~~~D~~~~~ 305 (335)
..-+|||+|||+|.--+-..+..+. .-.|.-.|.|+.-++..++.++..|+.+| ++.++|+.+..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~ 201 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD 201 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh
Confidence 4458999999999998877666543 35899999999999999999999999987 99999997743
No 246
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.032 Score=53.07 Aligned_cols=80 Identities=24% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceEEEEEEe
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVSLIFCI 320 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V~~IllD 320 (335)
..+|+|.-+|+|-=++..+.-.+.. +++..|+|++..+.+++|++.....+..+++.|+..+-.. ...||. |=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~---IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDV---IDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccE---EecC
Confidence 6799999999999999998876554 8999999999999999999998566778888888776543 345664 6678
Q ss_pred ccccc
Q 019802 321 FTWMI 325 (335)
Q Consensus 321 ~~cs~ 325 (335)
|..|.
T Consensus 129 PFGSP 133 (380)
T COG1867 129 PFGSP 133 (380)
T ss_pred CCCCC
Confidence 88774
No 247
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.94 E-value=0.006 Score=54.26 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=37.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~ 285 (335)
+..+=.++||+|||+|-.+..|-.+. .+++++|+|++|++.+.+.
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence 44445799999999999999887764 4799999999999998765
No 248
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.85 E-value=0.0075 Score=60.44 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=35.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHH
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 278 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~r 278 (335)
++++..|||+||||||..-..++.|+..+.|+++|+-+-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik 81 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK 81 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc
Confidence 4678899999999999999999999988999999997653
No 249
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.67 E-value=0.084 Score=47.56 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=50.3
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
.+....+..+..+|+|+|.|.|..+..+++.. ++.+++.+|. +.-++.+++ .++|+++.+|+.+
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~ 154 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD 154 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHh
Confidence 34455677777899999999999999999885 4689999998 777877777 5679999999983
No 250
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.63 E-value=0.029 Score=51.10 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCCCC-CC-CCceE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLDPK-DP-AYSEV 314 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~----~ni~~~~~D~~~~~~~-~~-~fd~V 314 (335)
...+||=+|.|.|+.+..+... .+-.+|+++|+++.-++.+++-+..... ++++++.+|+..+-.. .. .||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD-- 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD-- 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE--
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc--
Confidence 5789999999999999988765 3346899999999999999998876433 4799999999775432 22 455
Q ss_pred EEEEEeccc
Q 019802 315 SLIFCIFTW 323 (335)
Q Consensus 315 ~~IllD~~c 323 (335)
.|++|.+-
T Consensus 153 -vIi~D~~d 160 (246)
T PF01564_consen 153 -VIIVDLTD 160 (246)
T ss_dssp -EEEEESSS
T ss_pred -EEEEeCCC
Confidence 58888664
No 251
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.59 E-value=0.012 Score=55.09 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=52.9
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc-eEEEEEEecc
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS-EVSLIFCIFT 322 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd-~V~~IllD~~ 322 (335)
+++|++||.||.+.-+-+. +--.+.|+|+++...+..+.|.. ....+|..++... .+. .+|.++.=||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~--~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS--DLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH--HHHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccc--cccccceEEEeccC
Confidence 6899999999999887665 23468899999999999999977 6788899888753 133 2667888999
Q ss_pred cccc
Q 019802 323 WMII 326 (335)
Q Consensus 323 cs~~ 326 (335)
|-+-
T Consensus 71 CQ~f 74 (335)
T PF00145_consen 71 CQGF 74 (335)
T ss_dssp -TTT
T ss_pred CceE
Confidence 9763
No 252
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.033 Score=51.73 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=65.9
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCC-CC
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKD-PA 310 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g----~~ni~~~~~D~~~~~~~~-~~ 310 (335)
...+.| .+||=+|-|.|+.+..+.... +-.+++.+|+++.-++.+++-+.... -+.++++..|+.++-... .+
T Consensus 72 ~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 72 LAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred hhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 344556 599999999999999998874 45799999999999999999988765 466899999998866533 35
Q ss_pred CceEEEEEEeccc
Q 019802 311 YSEVSLIFCIFTW 323 (335)
Q Consensus 311 fd~V~~IllD~~c 323 (335)
|| +|++|...
T Consensus 150 fD---vIi~D~td 159 (282)
T COG0421 150 FD---VIIVDSTD 159 (282)
T ss_pred CC---EEEEcCCC
Confidence 76 48888443
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.023 Score=50.93 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHH-HHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR-LKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~-~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
.+|..|||+||.+||+|-.+.+. +..+|+|+|..-..+.- ++. ...-+..-..++..+.+.+- .+.++.++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~-~~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDF-TEKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHc-ccCCCeEE
Confidence 36889999999999999988876 45799999997655432 221 11124445566666665431 23456677
Q ss_pred Eecc
Q 019802 319 CIFT 322 (335)
Q Consensus 319 lD~~ 322 (335)
+|..
T Consensus 150 ~DvS 153 (245)
T COG1189 150 IDVS 153 (245)
T ss_pred EEee
Confidence 7753
No 254
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.36 E-value=0.079 Score=49.03 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 289 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~ 289 (335)
..+|||+|||||.-+-.+.+..+.-..++++|.|+.+++..+..++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 458999999999877777777776678999999999999988877754
No 255
>PHA01634 hypothetical protein
Probab=95.27 E-value=0.14 Score=41.47 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~ 291 (335)
.+.+|+|+||+-|.-++.++.. +..+|+|++.+++..+..++|++-..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhhee
Confidence 5789999999999999988754 567999999999999999999887644
No 256
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.00 E-value=0.0023 Score=50.04 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEEcCCCchHHHHHHHHcCCCe--EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEEecc
Q 019802 246 LDACSAPGNKTVHLAALMKGKG--KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFCIFT 322 (335)
Q Consensus 246 LD~cagpG~kt~~la~~~~~~g--~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~IllD~~ 322 (335)
|++|+..|.-|.++++.+++.+ +++++|..+. .+..++.+++.++. +++++++|..+.-+... -..++.|++|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence 6899999999999998877655 8999999986 55556666656664 59999999966432111 125667999986
Q ss_pred cccccc
Q 019802 323 WMIIMF 328 (335)
Q Consensus 323 cs~~g~ 328 (335)
=+..++
T Consensus 79 H~~~~~ 84 (106)
T PF13578_consen 79 HSYEAV 84 (106)
T ss_dssp --HHHH
T ss_pred CCHHHH
Confidence 554444
No 257
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.95 E-value=0.23 Score=39.29 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=47.5
Q ss_pred EEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CCCCC-CCCceE
Q 019802 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LDPKD-PAYSEV 314 (335)
Q Consensus 245 VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~--~~~~~-~~fd~V 314 (335)
++|+|||+|..+ .++........++++|+++.++...+......+...+.+...|... ++... ..||.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999988 5555533223888999999999995555544222126788888776 55544 357754
No 258
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.78 E-value=0.031 Score=53.91 Aligned_cols=64 Identities=30% Similarity=0.343 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCC
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLD 305 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~--~ni~~~~~D~~~~~ 305 (335)
.++|+.|-|+|||-|-.+.-++.. ..+|+|.|.++.+++-++.|++..-+ .+|++++.|+...-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999999888765 48999999999999999999986655 34899999986643
No 259
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.62 E-value=0.035 Score=52.43 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=53.6
Q ss_pred EEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEecccc
Q 019802 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM 324 (335)
Q Consensus 245 VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs 324 (335)
|+|++||.||.+.-+-+. +--.+.|+|+++...+..+.|.. + .+.++|..++...+ +..++.++.-|||-
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--IPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--CCCcCEEEecCCCc
Confidence 689999999999877654 23356789999999999999864 2 34567887776432 23466788899997
Q ss_pred cc
Q 019802 325 II 326 (335)
Q Consensus 325 ~~ 326 (335)
+-
T Consensus 71 ~f 72 (315)
T TIGR00675 71 PF 72 (315)
T ss_pred cc
Confidence 53
No 260
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.14 E-value=0.21 Score=46.14 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=43.9
Q ss_pred CEEEEEcCCCchHHHHH-HHHcCCCeEEEEEeCCHHHHHHHHHHHH-HhCCC-cEEEEeccCCCCCCCCCCCce
Q 019802 243 WKVLDACSAPGNKTVHL-AALMKGKGKIVACELNKERVRRLKDTIK-LSGAA-NIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~l-a~~~~~~g~i~a~D~~~~rl~~~~~~~~-~~g~~-ni~~~~~D~~~~~~~~~~fd~ 313 (335)
.+|+=+|+||=-.|..+ +.....+..|+.+|+++...+.+++-++ .+|+. .++++++|+.+....-..||.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 49999999999988754 4444445789999999999999999888 55653 489999999877644445764
No 261
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.02 E-value=0.2 Score=46.99 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=54.8
Q ss_pred cccccceEEecCchHHH-HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802 216 PLIVNGCVFLQGKASSM-VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (335)
Q Consensus 216 ~~~~~g~~~iQd~~s~l-~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni 294 (335)
-.|.+|. .+|..+-.+ +.....+++|.+||=+||||=|..+.+....-+..+|+..|+++.|++.+++ +|.+.+
T Consensus 144 vs~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~ 218 (354)
T KOG0024|consen 144 VSFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVT 218 (354)
T ss_pred Cchhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEE
Confidence 3455664 344444322 2345678999999999999977777665544457899999999999999887 687654
Q ss_pred EEE
Q 019802 295 EVL 297 (335)
Q Consensus 295 ~~~ 297 (335)
...
T Consensus 219 ~~~ 221 (354)
T KOG0024|consen 219 DPS 221 (354)
T ss_pred eec
Confidence 433
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=94.00 E-value=0.12 Score=48.08 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=38.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~ 288 (335)
.+|+.|||.++|+|..+... +.++ .+.+++|++++-++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA-~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVA-KASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHH-HHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 68999999999998776544 4443 5799999999999999999864
No 263
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.91 E-value=0.11 Score=47.65 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CCCceEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PAYSEVSLIF 318 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~--~~fd~V~~Il 318 (335)
.|..|+=+| --..|...+.+.+-.-+|..+|++++-++..++-++.+|++||+.+..|.++.-|.+ ..|| +++
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFD---vfi 226 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFD---VFI 226 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCC---eee
Confidence 466787776 444444444444445689999999999999999999999999999999999976643 4677 366
Q ss_pred Eeccccccccccc
Q 019802 319 CIFTWMIIMFHGF 331 (335)
Q Consensus 319 lD~~cs~~g~~~~ 331 (335)
-|||-+-.|+.-|
T Consensus 227 TDPpeTi~alk~F 239 (354)
T COG1568 227 TDPPETIKALKLF 239 (354)
T ss_pred cCchhhHHHHHHH
Confidence 7999887776544
No 264
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.48 E-value=0.26 Score=49.05 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------------- 308 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~------------- 308 (335)
.-+++|++||.||.+.-+-.. + --.|.++|+++...+..+.|... ..+...+++|..++...+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999887543 3 23678999999999999988531 122345566776665321
Q ss_pred -CCCceEEEEEEeccccc
Q 019802 309 -PAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 309 -~~fd~V~~IllD~~cs~ 325 (335)
..+..++.++-=|||-+
T Consensus 164 ~~~~p~~DvL~gGpPCQ~ 181 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQP 181 (467)
T ss_pred hccCCCCCEEEEcCCCCc
Confidence 11224566777999974
No 265
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.48 E-value=0.14 Score=45.43 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
...+.||+|||-|..|-++...+ --+|..+|..++-++.+++.+...+.....+.+.-.+++.|....||.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlI 126 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLI 126 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEE
Confidence 35689999999999999875432 3589999999999999998766533334678888888888876778753
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.46 E-value=0.12 Score=45.32 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEeccCCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------AANIEVLHGDFLNLDP 306 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-------~~ni~~~~~D~~~~~~ 306 (335)
--.+.|+|||-||....++.+.+ +.-|.+++|..+-.+.++++++.++ ..|+.+...++..+.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence 34689999999999999999864 5789999999888888888888777 6788888877766554
No 267
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.41 E-value=0.35 Score=42.98 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCce
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~ 313 (335)
+.+.++.|+||=-|..++.+... +....++|.|++++-++.+.+++++.++. .+.+..+|....-..+..+|.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCE
Confidence 45667999999999999998876 45578999999999999999999999874 488899998553333334664
No 268
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=93.29 E-value=0.17 Score=48.76 Aligned_cols=87 Identities=23% Similarity=0.227 Sum_probs=70.7
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCc
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd 312 (335)
.......++..++|++||-|+-+..++.. ....++++|.++..+.+........++++ ..++.+|+.+.+++++.||
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd 180 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFD 180 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccC
Confidence 33445678889999999999999999877 24689999999999999999888888755 4458899999999999999
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
.|. ++|..|=
T Consensus 181 ~v~--~ld~~~~ 190 (364)
T KOG1269|consen 181 GVR--FLEVVCH 190 (364)
T ss_pred cEE--EEeeccc
Confidence 864 3466653
No 269
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.29 E-value=0.16 Score=44.61 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~ 284 (335)
-.+|+.|||.+||+|..+.... .++ .+.+++|+++.-++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~-~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAE-ELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHH-HTT---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHH-HcC--CeEEEEeCCHHHHHHhcC
Confidence 4679999999999998765444 443 579999999999988764
No 270
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.17 E-value=0.036 Score=54.45 Aligned_cols=86 Identities=24% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC----CCCCceE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK----DPAYSEV 314 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~----~~~fd~V 314 (335)
.++-+|||.-+|+|--++..|..+++-++|+|.|.++.-++..++|.+..++.+ ++..+.|+..+... ...||.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv- 186 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV- 186 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce-
Confidence 456789999999999999999999988999999999999999999999988865 67788888665432 345764
Q ss_pred EEEEEecccccccc
Q 019802 315 SLIFCIFTWMIIMF 328 (335)
Q Consensus 315 ~~IllD~~cs~~g~ 328 (335)
|=|||..|.+-+
T Consensus 187 --IDLDPyGs~s~F 198 (525)
T KOG1253|consen 187 --IDLDPYGSPSPF 198 (525)
T ss_pred --EecCCCCCccHH
Confidence 778988876544
No 271
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.01 E-value=0.38 Score=39.82 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=42.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEEeccccccc
Q 019802 268 KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM 327 (335)
Q Consensus 268 ~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g 327 (335)
+|+|+|+.+..++..+++++..++. ++++++.+...+...-.. ..|++++++.+.-.-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-~~v~~~iFNLGYLPgg 60 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-GPVDAAIFNLGYLPGG 60 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S---EEEEEEEESB-CTS
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-CCcCEEEEECCcCCCC
Confidence 5899999999999999999999985 499999999888753222 4688899987665444
No 272
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.69 E-value=0.28 Score=44.66 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
..+|+.-.|+||+|||.|-+|..+ +-.|+|+|.-+- .+++-..| .|+-...|...+.|.. ..|+..+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~m-----a~sL~dtg--~v~h~r~DGfk~~P~r---~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPM-----AQSLMDTG--QVTHLREDGFKFRPTR---SNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchh-----hhhhhccc--ceeeeeccCcccccCC---CCCceEE
Confidence 357999999999999999988765 679999997642 23333344 3788889998888733 3466788
Q ss_pred Eec
Q 019802 319 CIF 321 (335)
Q Consensus 319 lD~ 321 (335)
||.
T Consensus 276 CDm 278 (358)
T COG2933 276 CDM 278 (358)
T ss_pred eeh
Confidence 884
No 273
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.50 E-value=0.68 Score=46.65 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=68.9
Q ss_pred cceEEecCchHHHHHHHcCCC--CCCEEEEEcCCCchHHHHHHHHcC---CCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802 220 NGCVFLQGKASSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (335)
Q Consensus 220 ~g~~~iQd~~s~l~~~~l~~~--~g~~VLD~cagpG~kt~~la~~~~---~~g~i~a~D~~~~rl~~~~~~~~~~g~~-- 292 (335)
.|.++.-..-+.+.+.++.+. |+..|.|+|||+|+.-......++ ....+++.+....+...++.|+.-.|+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 455555555566667777765 678999999999998875544332 1246899999999999999998765552
Q ss_pred cEEEEeccCCCC-CC-CCCCCceEEEEEEeccccc
Q 019802 293 NIEVLHGDFLNL-DP-KDPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 293 ni~~~~~D~~~~-~~-~~~~fd~V~~IllD~~cs~ 325 (335)
......+|-..- +. ....|| .|+.+||-+.
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D---~v~~NpPf~~ 305 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFE---VVVSNPPYSI 305 (501)
T ss_pred ccCcccCCcCCCccccccccCC---EEeecCCccc
Confidence 233444444332 11 123465 4788998875
No 274
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.42 E-value=0.18 Score=44.54 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=47.4
Q ss_pred cceEEecCchHHHHHH-HcCCCCCCEEEEEcCCCchHHHHHHHH---cCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 019802 220 NGCVFLQGKASSMVAA-ALAPKPGWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295 (335)
Q Consensus 220 ~g~~~iQd~~s~l~~~-~l~~~~g~~VLD~cagpG~kt~~la~~---~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~ 295 (335)
-|...+|.+.-+.+.. ++---+.+.|+++|.+-||-...+|.+ +++.++|+++|++-+......-....+ .+.|+
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~ 88 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRIT 88 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEE
T ss_pred CCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceE
Confidence 4667777776554433 222224579999999999999988764 457799999999755443322222222 15799
Q ss_pred EEeccCCCCC
Q 019802 296 VLHGDFLNLD 305 (335)
Q Consensus 296 ~~~~D~~~~~ 305 (335)
++++|..+..
T Consensus 89 ~i~Gds~d~~ 98 (206)
T PF04989_consen 89 FIQGDSIDPE 98 (206)
T ss_dssp EEES-SSSTH
T ss_pred EEECCCCCHH
Confidence 9999997755
No 275
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.18 E-value=0.065 Score=49.56 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCce
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~ 313 (335)
.|+.|.|+-||-|.+|+-..-. .+...|+|+|.++.-++.++++++..++.. ..++.+|.+...+. ...|+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~Adr 265 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADR 265 (351)
T ss_pred ccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchh
Confidence 3799999999999999944333 245799999999999999999999887643 45677777766543 34555
No 276
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.06 E-value=0.26 Score=46.77 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCceEEEEEEec
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYSEVSLIFCIF 321 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~-~fd~V~~IllD~ 321 (335)
-+++|++||-||...-+-+. +---+.|+|+++..++..+.|... -.++..|...+....- .+ .||.|+-=|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-DVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-CCCEEEeCC
Confidence 47999999999999766554 234688999999999999999763 3466677766554321 11 466788889
Q ss_pred cccc
Q 019802 322 TWMI 325 (335)
Q Consensus 322 ~cs~ 325 (335)
||=+
T Consensus 76 PCQ~ 79 (328)
T COG0270 76 PCQD 79 (328)
T ss_pred CCcc
Confidence 9954
No 277
>PRK13699 putative methylase; Provisional
Probab=92.03 E-value=0.34 Score=43.50 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g 290 (335)
-.+|+.|||..||+|.......++ + .+.+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 468999999999998876655443 3 478899999999999999988654
No 278
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.68 E-value=0.57 Score=42.50 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
+.++|+|+|||-=-.+.-.... .++..++|+|++...++.+..-+..+|. +.++...|...-++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~ 168 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPP 168 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHT
T ss_pred CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCC
Confidence 4679999999998888755443 3456999999999999999999999997 57777778766543
No 279
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.23 E-value=0.9 Score=43.41 Aligned_cols=81 Identities=10% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH--HHHhCC-----CcEEEEeccCCCCCC-CCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLSGA-----ANIEVLHGDFLNLDP-KDPAY 311 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~--~~~~g~-----~ni~~~~~D~~~~~~-~~~~f 311 (335)
+.-++||=+|-|-|--...+... +.-++|+-+|.+++|++..+.+ +...+- +.++++..|+.++-. ..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34578999999999888877765 4468999999999999999944 333321 359999999988654 33456
Q ss_pred ceEEEEEEecccc
Q 019802 312 SEVSLIFCIFTWM 324 (335)
Q Consensus 312 d~V~~IllD~~cs 324 (335)
| .|++|.|.-
T Consensus 367 D---~vIVDl~DP 376 (508)
T COG4262 367 D---VVIVDLPDP 376 (508)
T ss_pred c---EEEEeCCCC
Confidence 6 577876643
No 280
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=90.72 E-value=0.25 Score=48.03 Aligned_cols=83 Identities=14% Similarity=0.048 Sum_probs=59.0
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCceEEEEEEec
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVSLIFCIF 321 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~-~~fd~V~~IllD~ 321 (335)
.|||+|+|+|-.+.+.+..+. -.|+|++.-.-|.+.++.-+.+.|.+ +|++++.--++..... ...|.+..-++|-
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT 146 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence 599999999999987777653 46999999999999999999999984 5888887666554331 1233222233344
Q ss_pred ccccccc
Q 019802 322 TWMIIMF 328 (335)
Q Consensus 322 ~cs~~g~ 328 (335)
---|.|.
T Consensus 147 EligeGa 153 (636)
T KOG1501|consen 147 ELIGEGA 153 (636)
T ss_pred hhhcccc
Confidence 4445544
No 281
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=90.51 E-value=0.27 Score=44.02 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
...++|+||+-|....|+... +-++++-+|.|..|++..+.. +.-++ .+....+|-+.+++.+++||.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhh
Confidence 457999999999999999765 457899999999999876543 11222 2556789999999999888753
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.20 E-value=0.2 Score=49.63 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=46.4
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEE---EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVA---CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a---~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
.+||+|||.|.++..|.++ +..+++ .|.++...+.+-++ |+.-+ +-..-...+|+.+++||.|.+--|-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleR----Gvpa~-~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALER----GVPAM-IGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhc----Ccchh-hhhhccccccCCccchhhhhccccc
Confidence 6999999999999999876 233333 24455555554443 65422 2222345788899999987665554
Q ss_pred cccc
Q 019802 321 FTWM 324 (335)
Q Consensus 321 ~~cs 324 (335)
.++.
T Consensus 192 i~W~ 195 (506)
T PF03141_consen 192 IPWH 195 (506)
T ss_pred ccch
Confidence 4444
No 283
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.78 E-value=1.8 Score=38.39 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=58.3
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCch--HHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCC-C
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGN--KTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFL-N 303 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~--kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~-~ 303 (335)
++-++..+..--.-..+++.||+-|. .|..|+... +..|+++++-.++..+...++.+..+|+.+ ++++.++.. +
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence 44444444333334578888776443 344443321 346899999999999999999999999866 588888753 3
Q ss_pred CCCCCCCCceEEEEEEec
Q 019802 304 LDPKDPAYSEVSLIFCIF 321 (335)
Q Consensus 304 ~~~~~~~fd~V~~IllD~ 321 (335)
+.+ .|..+|-+++|.
T Consensus 109 ~~~---~~~~iDF~vVDc 123 (218)
T PF07279_consen 109 VMP---GLKGIDFVVVDC 123 (218)
T ss_pred HHh---hccCCCEEEEeC
Confidence 332 255555677774
No 284
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=89.73 E-value=0.59 Score=41.33 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I 317 (335)
...++-.|-|+|||-+..+. .+++..+|+++|+-+. |-.++.+|...+|.++.+ ||.+
T Consensus 69 ~~~~~~viaD~GCGdA~la~----~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~s---vDv~ 126 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAK----AVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDES---VDVA 126 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHH----H--S---EEEEESS-S---------------STTEEES-TTS-S--TT----EEEE
T ss_pred hcCCCEEEEECCCchHHHHH----hcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCc---eeEE
Confidence 33446799999999988763 3445568999998753 224678999999988776 5567
Q ss_pred EEecccccccccccc
Q 019802 318 FCIFTWMIIMFHGFY 332 (335)
Q Consensus 318 llD~~cs~~g~~~~~ 332 (335)
++=..-||+-..+|+
T Consensus 127 VfcLSLMGTn~~~fi 141 (219)
T PF05148_consen 127 VFCLSLMGTNWPDFI 141 (219)
T ss_dssp EEES---SS-HHHHH
T ss_pred EEEhhhhCCCcHHHH
Confidence 777777777665554
No 285
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=87.84 E-value=0.81 Score=42.64 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=50.1
Q ss_pred CEEEEEcCCCchHHHHHH----HHcC---CCeEEEEEeCCHHHHHHHHHHH------------------HHh-----C--
Q 019802 243 WKVLDACSAPGNKTVHLA----ALMK---GKGKIVACELNKERVRRLKDTI------------------KLS-----G-- 290 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la----~~~~---~~g~i~a~D~~~~rl~~~~~~~------------------~~~-----g-- 290 (335)
-+|+.+||++|-=.--|| +.++ .+.+|+|.|+|+..++.+++-. .+. |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 599999999996554443 3322 2468999999999999998751 110 1
Q ss_pred -C-----CcEEEEeccCCCCCC-CCCCCceEEE
Q 019802 291 -A-----ANIEVLHGDFLNLDP-KDPAYSEVSL 316 (335)
Q Consensus 291 -~-----~ni~~~~~D~~~~~~-~~~~fd~V~~ 316 (335)
+ ..|.+.+.|..+.++ ....||.|.+
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c 229 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC 229 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence 1 247888888887443 2456887555
No 286
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.57 E-value=1.3 Score=45.15 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=55.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHh-----CC---CcEEEEeccCCCCCCCC
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLS-----GA---ANIEVLHGDFLNLDPKD 308 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~-----g~---~ni~~~~~D~~~~~~~~ 308 (335)
+.+.|..||=.|+ .|+.+.++++.+ ..+.+|++++.+..++..+.+.+... |. .++.++.+|+.+...-.
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 3446777775555 688999888765 34468999999999988776665542 21 25788999998755322
Q ss_pred CCCceEEEEEEec
Q 019802 309 PAYSEVSLIFCIF 321 (335)
Q Consensus 309 ~~fd~V~~IllD~ 321 (335)
..|..++.|++.+
T Consensus 155 ~aLggiDiVVn~A 167 (576)
T PLN03209 155 PALGNASVVICCI 167 (576)
T ss_pred HHhcCCCEEEEcc
Confidence 3355556666543
No 287
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.02 E-value=2.2 Score=41.04 Aligned_cols=51 Identities=20% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHH
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL 282 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~ 282 (335)
+.++..+.+.-+-+.|+|+|+|+|..+..|+-. .+-.|+|+|-|..-.+++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERA 192 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHH
Confidence 445555556667789999999999999988754 457999999985544443
No 288
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.58 E-value=1.7 Score=40.81 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=46.7
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
.+..+++||+.|-=+|.|.=|.+..+..+..+.++|+++|+++.+++.+++ +|..
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~----fGaT 239 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE----FGAT 239 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh----cCcc
Confidence 445678999999999999988888887777788999999999999998765 5764
No 289
>PRK00536 speE spermidine synthase; Provisional
Probab=86.49 E-value=3.4 Score=37.96 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCceEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVS 315 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g~--~ni~~~~~D~~~~~~~~~~fd~V~ 315 (335)
....+||=+|.|-||....+... + .+|+-+|+++..++.+++-+... ++ ++++++.. .. ....+.||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fD--- 141 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYD--- 141 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCC---
Confidence 34579999999999999998876 2 39999999999999999955442 23 44666652 11 11124576
Q ss_pred EEEEec
Q 019802 316 LIFCIF 321 (335)
Q Consensus 316 ~IllD~ 321 (335)
+|++|.
T Consensus 142 VIIvDs 147 (262)
T PRK00536 142 LIICLQ 147 (262)
T ss_pred EEEEcC
Confidence 589993
No 290
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.43 E-value=1.9 Score=40.87 Aligned_cols=56 Identities=25% Similarity=0.260 Sum_probs=46.6
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
+...+++++|+.|.=+|+|-=|.+..+...+.+.++|+|+|+++.|++.+++ +|..
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT 232 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT 232 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc
Confidence 4566789999999999999888877777777788999999999999998765 4664
No 291
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=86.23 E-value=3.1 Score=38.40 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCch----HHHHHHHHcCC----CeEEEEEeCCHHHHHHHHH
Q 019802 242 GWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKD 284 (335)
Q Consensus 242 g~~VLD~cagpG~----kt~~la~~~~~----~g~i~a~D~~~~rl~~~~~ 284 (335)
.-+|+-+||++|- .+..+.+.++. ..+|+|.|+|...|+.++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4589999999995 44455555542 5799999999999998864
No 292
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.46 E-value=0.76 Score=36.03 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHcCCCe-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEEEecc
Q 019802 250 SAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIFCIFT 322 (335)
Q Consensus 250 agpG~kt~~la~~~~~~g-~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~ 322 (335)
||.|..+.++++.+...+ .|+.+|.++++++.+++. | +.++.+|+.+... .....+.++.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhhhHHhhcCccccCEEEEccC
Confidence 577788888888776666 899999999998776654 3 5689999988653 2223455666766543
No 293
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=84.27 E-value=3.5 Score=39.32 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=37.1
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802 237 LAPKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285 (335)
Q Consensus 237 l~~~~g~~VLD~cag-pG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~ 285 (335)
.+.+||++|+=.|+| -|..+.++|..|+ .+|+|+|+++++++.+++.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 467899999988887 3445567777665 7999999999999887654
No 294
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=83.94 E-value=0.26 Score=43.40 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~ 284 (335)
..++||+|||-|-.|.+++-.+ ..|+|.+.|..|..+++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 4589999999999999998765 359999999998877654
No 295
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.43 E-value=2.5 Score=34.89 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=27.6
Q ss_pred EEcCCCc--hHHHHHH-HHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802 247 DACSAPG--NKTVHLA-ALMKGKGKIVACELNKERVRRLKDT 285 (335)
Q Consensus 247 D~cagpG--~kt~~la-~~~~~~g~i~a~D~~~~rl~~~~~~ 285 (335)
|+||.-| ..+..+. ....+.++|+++|.++..++.++.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666654 2456678999999999999999999
No 296
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.38 E-value=4.1 Score=38.95 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=37.3
Q ss_pred cCCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802 237 LAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDT 285 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~ 285 (335)
...+++++|+=+||||=|... +++.. .+..+|+++|.++.|++.+++.
T Consensus 164 ~~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 164 AAVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh
Confidence 334556699999999966664 55555 4568999999999999998874
No 297
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=81.72 E-value=2.1 Score=37.54 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=41.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHc----C----CCeEEEEEeCCHHHHHHHHHH--------------HHHh-----C--C-
Q 019802 242 GWKVLDACSAPGNKTVHLAALM----K----GKGKIVACELNKERVRRLKDT--------------IKLS-----G--A- 291 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~----~----~~g~i~a~D~~~~rl~~~~~~--------------~~~~-----g--~- 291 (335)
.-+|+.+||++|-=+--||-++ . -..+|+|.|+|+..++.+++- .+++ | .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4589999999996554443322 1 146999999999999988652 2221 1 0
Q ss_pred ------CcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802 292 ------ANIEVLHGDFLNLDPKDPAYSEVSLIFC 319 (335)
Q Consensus 292 ------~ni~~~~~D~~~~~~~~~~fd~V~~Ill 319 (335)
++|.+.+.|..+.++....| |.|+|
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~f---D~I~C 142 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRF---DLIFC 142 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------E---EEEEE
T ss_pred EChHHcCceEEEecccCCCCcccCCc---cEEEe
Confidence 25899999998833333344 55776
No 298
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=81.52 E-value=4.8 Score=38.81 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=39.9
Q ss_pred HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285 (335)
Q Consensus 235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~ 285 (335)
....+.+|++||..|+|+ |..+.+++..++ ..+|+++|.++++++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 345677899999998887 667778888764 34699999999999887764
No 299
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.96 E-value=4.4 Score=37.17 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcC----CCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDP 306 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~----~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~ 306 (335)
.++..++|+|||.|..+.++++.+. +...++.+|....|.+.=.. +.... ...++-+..|..+++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~-~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNK-IRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhh-hhccCCCCceEEEEEEeeccch
Confidence 5677999999999999999999874 34689999997777743222 22222 1246667777777664
No 300
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=79.99 E-value=2 Score=39.32 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI 320 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD 320 (335)
....|-|+|||-+-.+. ....+|+++|+.+- |-.++.+|+.++|..+.+.|. +++=
T Consensus 180 ~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDv---aV~C 235 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS------SERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDV---AVFC 235 (325)
T ss_pred CceEEEecccchhhhhh------ccccceeeeeeecC---------------CCceeeccccCCcCccCcccE---EEee
Confidence 34578999999987664 22457999998643 456789999999999888764 4444
Q ss_pred cccccccccccc
Q 019802 321 FTWMIIMFHGFY 332 (335)
Q Consensus 321 ~~cs~~g~~~~~ 332 (335)
...||+-..+|+
T Consensus 236 LSLMgtn~~df~ 247 (325)
T KOG3045|consen 236 LSLMGTNLADFI 247 (325)
T ss_pred HhhhcccHHHHH
Confidence 556666655554
No 301
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=79.09 E-value=3.8 Score=35.94 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=37.2
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHH
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 277 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~ 277 (335)
+..++||++|+|+--|.|..|..++..++++|.|+++=..+.
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 356789999999999999999999999999999999866554
No 302
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.77 E-value=7.2 Score=37.87 Aligned_cols=54 Identities=26% Similarity=0.251 Sum_probs=40.3
Q ss_pred HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH
Q 019802 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (335)
Q Consensus 232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~ 288 (335)
.-..+|++.|+++||-+++|..+. ..++ ..+..+|+|+|+|+..+.+++-.+..
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~-L~yL--~~~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNA-LDYL--LAGPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchH-HHHH--hcCCceEEEEeCCHHHHHHHHHHHHH
Confidence 445678999999999997765554 4442 33558999999999999888766553
No 303
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=77.41 E-value=5.1 Score=36.85 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=43.4
Q ss_pred CCEEEEEcCCC--chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagp--G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
-...||+|||- -+.+-++|+...++.+|+-+|+++--+.-.+..+....-....++.+|..+..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 36899999993 45677888888999999999999999998888877543223789999998865
No 304
>PRK07904 short chain dehydrogenase; Provisional
Probab=77.21 E-value=8.6 Score=34.61 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCC--eEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKER-VRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~--g~i~a~D~~~~r-l~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
..+.+||-.|| .||.+.++++.+-.. .+|+.++.++.. ++.+.+.++..+..++.++..|..+..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTD 73 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChH
Confidence 34567775555 789999999765322 489999998875 777777777766557889999987644
No 305
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=76.20 E-value=7.2 Score=33.21 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=46.1
Q ss_pred cCCCchHHHHHHHHcCCCeEEEEEeC--CHHH---HHHHHHHHHHhCCCcEE-EEeccCCCCCCCC----CCCceEEEEE
Q 019802 249 CSAPGNKTVHLAALMKGKGKIVACEL--NKER---VRRLKDTIKLSGAANIE-VLHGDFLNLDPKD----PAYSEVSLIF 318 (335)
Q Consensus 249 cagpG~kt~~la~~~~~~g~i~a~D~--~~~r---l~~~~~~~~~~g~~ni~-~~~~D~~~~~~~~----~~fd~V~~Il 318 (335)
|=|-=..+..|+...+....|+|.-. .+.- ...+.+|++.+.-.++. ....|++++.... ..||+ |+
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDr---Ii 80 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDR---II 80 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCE---EE
Confidence 33444455566666553456766544 3322 23344666655333333 4667998887543 56776 99
Q ss_pred Eeccccccccc
Q 019802 319 CIFTWMIIMFH 329 (335)
Q Consensus 319 lD~~cs~~g~~ 329 (335)
.++|+.|.|..
T Consensus 81 FNFPH~G~~~~ 91 (166)
T PF10354_consen 81 FNFPHVGGGSE 91 (166)
T ss_pred EeCCCCCCCcc
Confidence 99999995543
No 306
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=76.04 E-value=12 Score=33.09 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
..++..||=.| |.|+.+.+++..+.. ..+|+++|.+...++.+.+.++..+...+.++..|...
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~ 73 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLT 73 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccC
Confidence 34677888676 578888888765533 34899999999988888888877766567777777753
No 307
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.03 E-value=8.4 Score=35.80 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC-------CCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD-------PAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~-------~~f 311 (335)
.|..||=-||.. |.+.++|..+ ....+++-+-...+|++.+.+.++..+-.+ +.++..|..+...-. ..|
T Consensus 11 ~~kvVvITGASs-GIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASS-GIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 366677555554 5566666543 334578888899999999988888877766 999999999877422 468
Q ss_pred ceEEEEEEecccccccc
Q 019802 312 SEVSLIFCIFTWMIIMF 328 (335)
Q Consensus 312 d~V~~IllD~~cs~~g~ 328 (335)
.+||..+.+++-+..+.
T Consensus 90 g~vDvLVNNAG~~~~~~ 106 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLVGF 106 (282)
T ss_pred CCCCEEEecCccccccc
Confidence 88888888888777443
No 308
>PRK06940 short chain dehydrogenase; Provisional
Probab=76.01 E-value=15 Score=33.54 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=52.8
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCceEEEE
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSEVSLI 317 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~------~~fd~V~~I 317 (335)
.+|=.|+ ||.+.++++.+....+|+.+|.++..++.+.+.++..|. ++.++..|..+...-. ..|..++.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4554453 689999998887667899999998888877777665554 4777888887754210 124456666
Q ss_pred EEeccc
Q 019802 318 FCIFTW 323 (335)
Q Consensus 318 llD~~c 323 (335)
+..+..
T Consensus 81 i~nAG~ 86 (275)
T PRK06940 81 VHTAGV 86 (275)
T ss_pred EECCCc
Confidence 666554
No 309
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.26 E-value=14 Score=32.59 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=44.5
Q ss_pred EEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+|+=.| |+|+.+.+++..+- ...+|++++.++.+.+.+.+.+...+-.++.++..|..+..
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 64 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTA 64 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChH
Confidence 566454 56888888887654 33589999999988877766665444457889999988754
No 310
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=75.16 E-value=6 Score=35.35 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=48.3
Q ss_pred HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
....-..+-|+++|-||||.|..+.+. +-.++..++++..-+..++-..+... ....+.++|+....
T Consensus 45 ~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 45 KAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK 111 (326)
T ss_pred hccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence 344445788999999999999988865 34578888988877777666555333 24677788876654
No 311
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=75.03 E-value=6.5 Score=39.53 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=51.5
Q ss_pred CEEEEEcCCCchHH---HHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCc
Q 019802 243 WKVLDACSAPGNKT---VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYS 312 (335)
Q Consensus 243 ~~VLD~cagpG~kt---~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd 312 (335)
..|+-+|||.|-.. +..++......+++|+|.++..+-.++. .+..+- ..|+++..|.+.+++++...|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhcc
Confidence 35788999998654 4556666678899999999999998877 333333 359999999999986533333
No 312
>PRK06949 short chain dehydrogenase; Provisional
Probab=73.96 E-value=16 Score=32.39 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+.+||=.| |.|+.+.+++..+... .+|++++.++++++.+...+...+. ++.++..|..+..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~ 71 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQ 71 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHH
Confidence 467777655 7888888888776433 4799999999998888777765543 4778888887643
No 313
>PRK05599 hypothetical protein; Provisional
Probab=73.38 E-value=13 Score=33.24 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=55.0
Q ss_pred EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCceEEE
Q 019802 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVSL 316 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd~V~~ 316 (335)
.||=.|+ .+|.+..++..+....+|+.++.++.+++.+.+.++..|-..+.++..|..+...- ...+..+|.
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 3554444 67888888876666678999999999999888888776654577888898775531 123455666
Q ss_pred EEEeccc
Q 019802 317 IFCIFTW 323 (335)
Q Consensus 317 IllD~~c 323 (335)
++..+..
T Consensus 81 lv~nag~ 87 (246)
T PRK05599 81 AVVAFGI 87 (246)
T ss_pred EEEecCc
Confidence 7765543
No 314
>PRK07326 short chain dehydrogenase; Provisional
Probab=72.60 E-value=16 Score=32.04 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
++..||=.| |.|+.+.+++..+. .+.+|++++.++.+++.+.+.+... ..+.++.+|..+..
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~ 67 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEA 67 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHH
Confidence 356778666 58888888887653 2358999999998887776666543 35778888887643
No 315
>PRK12829 short chain dehydrogenase; Provisional
Probab=72.34 E-value=16 Score=32.52 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=46.5
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 237 LAPKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+...++.+||=.|++ |+.+.++++.+- ...+|+.++.++..++.+.+...+. ++.++..|+.+..
T Consensus 6 ~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~ 71 (264)
T PRK12829 6 LKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPA 71 (264)
T ss_pred hhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHH
Confidence 344577889977764 888888887653 3468999999988877766554432 5678888887654
No 316
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=71.94 E-value=6.8 Score=34.29 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=53.6
Q ss_pred eEEecCchHHHHH-HHcCCCCCCEEEEEcCCCchHHHHHHHHcC---CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 019802 222 CVFLQGKASSMVA-AALAPKPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVL 297 (335)
Q Consensus 222 ~~~iQd~~s~l~~-~~l~~~~g~~VLD~cagpG~kt~~la~~~~---~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~ 297 (335)
.-.+|.++-++.. +++--...+.|++.|..-||.+...|..|- ...+|+++|++-+-+...... .+.|.++
T Consensus 49 ~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~ 123 (237)
T COG3510 49 IPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFI 123 (237)
T ss_pred ccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEE
Confidence 3344554443332 234344567899999999999999888663 346899999987665443322 5678888
Q ss_pred eccCCCCC
Q 019802 298 HGDFLNLD 305 (335)
Q Consensus 298 ~~D~~~~~ 305 (335)
.++..++.
T Consensus 124 egss~dpa 131 (237)
T COG3510 124 EGSSTDPA 131 (237)
T ss_pred eCCCCCHH
Confidence 88887754
No 317
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.75 E-value=9.9 Score=34.29 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEe-ccCCCCCC-CCCCCceEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAAN-IEVLH-GDFLNLDP-KDPAYSEVS 315 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~n-i~~~~-~D~~~~~~-~~~~fd~V~ 315 (335)
.++-++||+|.|.--.--.+...+- ..+.++.|+++..+..++.++... ++.+ |++.. .|-..+-+ ....-+..+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 3566899999887655444444443 368999999999999999998865 5543 55543 22222211 112223445
Q ss_pred EEEEecccc
Q 019802 316 LIFCIFTWM 324 (335)
Q Consensus 316 ~IllD~~cs 324 (335)
..+|+||--
T Consensus 156 ~tlCNPPFh 164 (292)
T COG3129 156 ATLCNPPFH 164 (292)
T ss_pred eEecCCCcc
Confidence 699998854
No 318
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=71.65 E-value=13 Score=33.32 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEEE
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSLI 317 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~I 317 (335)
.+|.+||.+|-|-|-..+.+-+. ++ .+-+-++.++.-+++++...=+- -.||.+..+-=++.- ..++.||. |
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDG---I 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDG---I 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcce---e
Confidence 67999999999999999988776 33 45566999999999988875432 246777766443322 24566886 8
Q ss_pred EEecc
Q 019802 318 FCIFT 322 (335)
Q Consensus 318 llD~~ 322 (335)
+.|..
T Consensus 174 ~yDTy 178 (271)
T KOG1709|consen 174 YYDTY 178 (271)
T ss_pred Eeech
Confidence 88854
No 319
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=71.35 E-value=13 Score=34.12 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=40.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHH
Q 019802 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDT 285 (335)
Q Consensus 231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~ 285 (335)
+++-+...++||+.|| +-++.||.+..+.++.+- +..+++.-.+.++.+.+++|
T Consensus 136 ~ll~e~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken 190 (336)
T KOG1197|consen 136 MLLFEAYNVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN 190 (336)
T ss_pred HHHHHhcCCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc
Confidence 3445567899999999 566777777766665432 35788888899999998887
No 320
>PRK07454 short chain dehydrogenase; Provisional
Probab=70.45 E-value=26 Score=30.81 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+..+|=.| |.|+.+.++++.+- ...+|++++.++...+.+.+.++..+. ++.++.+|..+..
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 68 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV-KAAAYSIDLSNPE 68 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC-cEEEEEccCCCHH
Confidence 45677666 57888888887654 335899999999888877777766553 5788899998755
No 321
>PRK06194 hypothetical protein; Provisional
Probab=70.22 E-value=20 Score=32.61 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd~ 313 (335)
+.+|| +.-|.|+.+.++++.+. ...+|+.+|.+...++...+.+...+. ++.++.+|..+...-. ..|..
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56677 55566899999887654 345899999998888777666665454 5778899987654211 12334
Q ss_pred EEEEEEecccccc
Q 019802 314 VSLIFCIFTWMII 326 (335)
Q Consensus 314 V~~IllD~~cs~~ 326 (335)
++.|+..+..+..
T Consensus 84 id~vi~~Ag~~~~ 96 (287)
T PRK06194 84 VHLLFNNAGVGAG 96 (287)
T ss_pred CCEEEECCCCCCC
Confidence 5666666655443
No 322
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=69.71 E-value=12 Score=33.04 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=51.9
Q ss_pred EEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-------CCCCCceEE
Q 019802 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-------KDPAYSEVS 315 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-------~~~~fd~V~ 315 (335)
+||=. -|.|+.+.+++..+- ...+|++++.++.+.+.+...+...+. ++.++.+|..+... -...+..++
T Consensus 3 ~vlIt-Ga~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVT-GAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEc-CCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 45534 467888988887653 345899999999888888777766553 58888899877541 111233455
Q ss_pred EEEEeccc
Q 019802 316 LIFCIFTW 323 (335)
Q Consensus 316 ~IllD~~c 323 (335)
.|+..+..
T Consensus 81 ~vi~~a~~ 88 (255)
T TIGR01963 81 ILVNNAGI 88 (255)
T ss_pred EEEECCCC
Confidence 66665544
No 323
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=69.48 E-value=16 Score=33.26 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-----CCCCCCCCceEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-----LDPKDPAYSEVS 315 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~-----~~~~~~~fd~V~ 315 (335)
+|.. |..-+|+--.+.++. ..+-++.++|++++=...+++|+. +..++.+..+|.-. +|+.... -
T Consensus 89 ~~~~-l~~YpGSP~lA~~ll---R~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erR----g 158 (279)
T COG2961 89 PGGG-LRYYPGSPLLARQLL---REQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERR----G 158 (279)
T ss_pred CCCC-cccCCCCHHHHHHHc---chhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcc----e
Confidence 3444 666666665555544 446689999999999999999999 67789999999843 4444321 1
Q ss_pred EEEEecccc
Q 019802 316 LIFCIFTWM 324 (335)
Q Consensus 316 ~IllD~~cs 324 (335)
.||+|||--
T Consensus 159 lVLIDPPfE 167 (279)
T COG2961 159 LVLIDPPFE 167 (279)
T ss_pred EEEeCCCcc
Confidence 489999964
No 324
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.41 E-value=23 Score=30.93 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+.+||=.|+ +|+.+.++++.+. .+.+|+..+.++.+++.+.+.+...+ ++.++.+|..+..
T Consensus 4 ~~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHH
Confidence 3668887776 5888888887653 34589999999988887766555433 5778888887644
No 325
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=69.36 E-value=7.6 Score=34.64 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+..|| +..|.|+.+.+++..+. ...+|+.++.++.+.+.+.+.++..+. ++.++.+|..+..
T Consensus 6 ~~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 69 (262)
T PRK13394 6 NGKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNED 69 (262)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHH
Confidence 356677 66667889988887653 335899999999988888887776664 4778889987755
No 326
>PRK07576 short chain dehydrogenase; Provisional
Probab=69.20 E-value=24 Score=31.72 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
++..||=.| |.|+.+.++++.+. ...+|+++|.++..++...+.+...+. ++.++..|..+..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~ 71 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYA 71 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHH
Confidence 567788666 57888888876554 335899999999888877777766554 4677888887644
No 327
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.01 E-value=11 Score=35.63 Aligned_cols=47 Identities=13% Similarity=-0.053 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEcCCCchHH-HHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802 238 APKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKD 284 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt-~~la~~~~~~g~i~a~D~~~~rl~~~~~ 284 (335)
.+++|++||=.|||+=|.. .+++..+.+..+|+++|.+++|++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4578999999987654443 3455543234589999999999998764
No 328
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=68.68 E-value=25 Score=31.36 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+.+||=.| |.|+.+.++++.+.. ..+|+.++.+..+++.+...+...+. ++.++.+|..+..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~ 74 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEA 74 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHH
Confidence 466777666 678999999887642 34899999999988887777766554 4678889988754
No 329
>PLN00198 anthocyanidin reductase; Provisional
Probab=68.59 E-value=6.7 Score=36.84 Aligned_cols=81 Identities=11% Similarity=0.191 Sum_probs=45.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCceE
Q 019802 237 LAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEV 314 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~~~~~~fd~V 314 (335)
+-|..+.+|| +.-|+|..+.|+++.+-. +.+|+++..+......... +..+ ...+++++.+|..+...-...+..+
T Consensus 4 ~~~~~~~~vl-ItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 4 LTPTGKKTAC-VIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred ccCCCCCeEE-EECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHhcC
Confidence 3455577777 555569999999986643 3478777665443332221 1111 1235888999988754322223344
Q ss_pred EEEEE
Q 019802 315 SLIFC 319 (335)
Q Consensus 315 ~~Ill 319 (335)
+.|+-
T Consensus 82 d~vih 86 (338)
T PLN00198 82 DLVFH 86 (338)
T ss_pred CEEEE
Confidence 44543
No 330
>PRK06914 short chain dehydrogenase; Provisional
Probab=68.42 E-value=28 Score=31.42 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC------CCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD------PAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~------~~fd~ 313 (335)
+..|| +.-|.|+.+.+++..+. .+.+|++++.++..++.+.+.....+. .++.++.+|..+...-. ..+..
T Consensus 3 ~k~~l-ItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAI-VTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEE-EECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34556 44467788888876543 345899999999888888777666554 35888899998754211 12445
Q ss_pred EEEEEEeccccccc
Q 019802 314 VSLIFCIFTWMIIM 327 (335)
Q Consensus 314 V~~IllD~~cs~~g 327 (335)
++.|+..+..+..+
T Consensus 82 id~vv~~ag~~~~~ 95 (280)
T PRK06914 82 IDLLVNNAGYANGG 95 (280)
T ss_pred eeEEEECCcccccC
Confidence 67777776554433
No 331
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=68.40 E-value=7.3 Score=36.30 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSLIFC 319 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~Ill 319 (335)
|.+||=.| |+|+.+.++++.+- .+.+|+++..+..............+. .++.++.+|..+...-...++.++.|+-
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 56777555 68999999987654 335787777766554433322222232 3588889999876532222334454554
Q ss_pred ec
Q 019802 320 IF 321 (335)
Q Consensus 320 D~ 321 (335)
-+
T Consensus 84 ~A 85 (325)
T PLN02989 84 TA 85 (325)
T ss_pred eC
Confidence 44
No 332
>PRK07024 short chain dehydrogenase; Provisional
Probab=68.06 E-value=16 Score=32.64 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=42.8
Q ss_pred CEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+|| +.-|.|+.+.++++.+.. ..+|+.+|.+..+++.+.+.+...+ ++.++..|..+..
T Consensus 3 ~~vl-ItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~ 63 (257)
T PRK07024 3 LKVF-ITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDAD 63 (257)
T ss_pred CEEE-EEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHH
Confidence 3555 444588999988876643 3589999999988877666554333 6888899997744
No 333
>PRK07831 short chain dehydrogenase; Provisional
Probab=67.55 E-value=29 Score=30.99 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~-~g~~ni~~~~~D~~~~~ 305 (335)
.+.++|=.|++..|.+..++..+. ...+|+.+|.++.+++...+.++. +|-.++.++..|..+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 82 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEA 82 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHH
Confidence 466777777653367777776543 335799999999988888777765 45456888889987643
No 334
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.32 E-value=26 Score=30.93 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+..|| +.-|+|+.+.+++..+. ...+|+.++.++.+++.+...++..+. ++.++.+|..+..
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 66 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEE 66 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHH
Confidence 45666 55567999999988654 335899999999988888777766554 5788888887644
No 335
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=67.21 E-value=13 Score=37.53 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=37.8
Q ss_pred CCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 239 PKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
..++++|+=+|||+=|... ..|..++ ..|+++|.+++|++.+++ +|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 4679999999999988665 5555554 379999999999987765 4664
No 336
>PLN02540 methylenetetrahydrofolate reductase
Probab=66.93 E-value=14 Score=37.68 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCch----HHHHHHHHcCCC------eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 242 GWKVLDACSAPGN----KTVHLAALMKGK------GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 242 g~~VLD~cagpG~----kt~~la~~~~~~------g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
+...+|+.-|+|| +|..++..+.+. -++++.|.+...++..-..+..+|+.||-.+.||.-.
T Consensus 28 ~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~ 99 (565)
T PLN02540 28 GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPH 99 (565)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 4568999999998 577777766544 4899999999999999999999999999999999754
No 337
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=66.91 E-value=12 Score=33.86 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=57.1
Q ss_pred CEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-------CCCCCceE
Q 019802 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-------KDPAYSEV 314 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-------~~~~fd~V 314 (335)
..|| +.-++.|.+...|+.+. ...+|+......+||+.+...+.. ..+.+...|.++... ....|..|
T Consensus 7 kv~l-ITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 7 KVAL-ITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred cEEE-EecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 3444 55555666666666553 346999999999999998888775 357788889888643 23468888
Q ss_pred EEEEEecccccc
Q 019802 315 SLIFCIFTWMII 326 (335)
Q Consensus 315 ~~IllD~~cs~~ 326 (335)
|.++-+++.+-.
T Consensus 83 DiLvNNAGl~~g 94 (246)
T COG4221 83 DILVNNAGLALG 94 (246)
T ss_pred cEEEecCCCCcC
Confidence 888888876643
No 338
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=66.14 E-value=5.9 Score=37.21 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCC---eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~---g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
|.+||=.| |+|+.+.+++..+-.. .+|+++|.+......+...+ +-.++.++.+|..+...-...+..++.|+
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 56777555 4799999998865432 47999998766544333222 22468889999987553222233445455
Q ss_pred Ee
Q 019802 319 CI 320 (335)
Q Consensus 319 lD 320 (335)
--
T Consensus 80 h~ 81 (324)
T TIGR03589 80 HA 81 (324)
T ss_pred EC
Confidence 43
No 339
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=65.45 E-value=16 Score=34.60 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeC---CHHHHHHHHHHHHHhCCC
Q 019802 239 PKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACEL---NKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 239 ~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~---~~~rl~~~~~~~~~~g~~ 292 (335)
.++|++||=.|+|+ |..+.+++..++ .+|++++. ++.|++.++ ++|.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~----~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE----ELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH----HcCCE
Confidence 46899999888754 333445666653 37999987 678877654 46764
No 340
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.04 E-value=33 Score=30.74 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
++..||=.| |.|+.+.++++.+ ..+.+|+.++.+++.++.+.+.++..+. .+.++..|..+..
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~ 72 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPE 72 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHH
Confidence 467788666 5788999888755 3346899999999888887777766553 4778888887754
No 341
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=64.30 E-value=25 Score=33.18 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=36.8
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 237 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 237 l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
..+++|++||=.|+|+ |..+.++|..++ .+|+++|.++.|++.+++ +|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCc
Confidence 4567899999998865 445556666654 479999999999887653 5764
No 342
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=63.60 E-value=37 Score=31.28 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
..+.++| +.-|++|.+..+|+.+.. +..|+-+-.+++||+.+.+.++...--.+.++..|..+...
T Consensus 4 ~~~~~~l-ITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~ 70 (265)
T COG0300 4 MKGKTAL-ITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEA 70 (265)
T ss_pred CCCcEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhH
Confidence 3466677 455677888888876643 46899999999999999999987442258899999988763
No 343
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=63.33 E-value=7.8 Score=39.53 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=44.1
Q ss_pred CEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEEE
Q 019802 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIFC 319 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~Ill 319 (335)
++|+=+ |-|..+.++++.+.. +..++.+|.++++++.+++ .| +.++++|+.+... .....+.++.+++
T Consensus 418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g---~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG---IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC---CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 345544 455555667776543 3589999999999888764 34 5789999988542 2223445555655
No 344
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=62.42 E-value=45 Score=30.54 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCC---eEEEEEeCCHHHHHHHHHHHHH-h-CCCcEEEEeccCCC
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKL-S-GAANIEVLHGDFLN 303 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~---g~i~a~D~~~~rl~~~~~~~~~-~-g~~ni~~~~~D~~~ 303 (335)
.-.+...+|+|+|.-.||..+...+... .+.+.+|+|+.-++.-.+.+.+ + ++ .|.-+++|.+.
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~ 144 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYEL 144 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHH
Confidence 3447899999999999999988766542 4789999999988765554443 2 33 36667777644
No 345
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=62.39 E-value=11 Score=35.03 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVSLIFC 319 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~~~~~fd~V~~Ill 319 (335)
|.+|| +.-|+|..+.+++..+-.. .+|++++.+..............+ ..+++++.+|..+...-...++.++.|+-
T Consensus 4 ~~~il-VtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVC-VTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEE-EECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45676 4445899999998876433 478888876554332222221112 24688999999875432223444555655
Q ss_pred eccc
Q 019802 320 IFTW 323 (335)
Q Consensus 320 D~~c 323 (335)
-+..
T Consensus 83 ~A~~ 86 (322)
T PLN02662 83 TASP 86 (322)
T ss_pred eCCc
Confidence 5443
No 346
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.34 E-value=41 Score=29.56 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd~ 313 (335)
+..||=.| |.|+.+.+++..+-. ..+|+.++.+......+.+.+...+. ++.++.+|..+...-. ..+..
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56677665 468888888876543 34899999999888888777766543 5788888887644211 12334
Q ss_pred EEEEEEecccc
Q 019802 314 VSLIFCIFTWM 324 (335)
Q Consensus 314 V~~IllD~~cs 324 (335)
++.++..+..+
T Consensus 81 ~d~vi~~ag~~ 91 (250)
T TIGR03206 81 VDVLVNNAGWD 91 (250)
T ss_pred CCEEEECCCCC
Confidence 56666666543
No 347
>PRK06172 short chain dehydrogenase; Provisional
Probab=62.24 E-value=47 Score=29.35 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+.+||=.| |.|+.+.+++..+. ...+|+.++.++..++.+.+.++..+. ++.++..|..+..
T Consensus 6 ~~k~ilItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 69 (253)
T PRK06172 6 SGKVALVTG-GAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDA 69 (253)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHH
Confidence 356777666 46788887776553 335899999999998888888777664 5888889987643
No 348
>PRK12939 short chain dehydrogenase; Provisional
Probab=62.01 E-value=38 Score=29.73 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
++..|| +-.|.|+.+.+++..+. ...+|++++.++.++....+.++..+. ++.++..|+.+..
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 69 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPA 69 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHH
Confidence 456777 44567899999987654 335889999999888887777765553 5888999997754
No 349
>PRK08251 short chain dehydrogenase; Provisional
Probab=61.12 E-value=44 Score=29.37 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCc
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
+..||=.| |+|+.+.++++.+. ...+|+.++.++.+++.+...+.... -.++.+...|..+...- ...|.
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34567555 67899998887653 23589999999999888877665432 12578888998875421 12345
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
.++.|+..+..+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 566777766543
No 350
>PRK07677 short chain dehydrogenase; Provisional
Probab=60.72 E-value=50 Score=29.28 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=50.5
Q ss_pred CEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCceE
Q 019802 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEV 314 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd~V 314 (335)
.++|=.|+ .|+.+.++++.+. ...+|+.++.+..+++.+.+.+...+ .++.++..|..+...- ...|..+
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 45664444 6667777776543 34589999999988888877776555 3578888888764321 1123345
Q ss_pred EEEEEeccc
Q 019802 315 SLIFCIFTW 323 (335)
Q Consensus 315 ~~IllD~~c 323 (335)
+.++-.+.+
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 666665543
No 351
>PTZ00357 methyltransferase; Provisional
Probab=60.31 E-value=45 Score=35.06 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=42.5
Q ss_pred EEEEEcCCCchHHHH---HHHHcCCCeEEEEEeCCHHHHHHHHHHHHH-hCCC--------cEEEEeccCCCCCCC
Q 019802 244 KVLDACSAPGNKTVH---LAALMKGKGKIVACELNKERVRRLKDTIKL-SGAA--------NIEVLHGDFLNLDPK 307 (335)
Q Consensus 244 ~VLD~cagpG~kt~~---la~~~~~~g~i~a~D~~~~rl~~~~~~~~~-~g~~--------ni~~~~~D~~~~~~~ 307 (335)
.|+=+|||.|..-.. .++..+-..+|+|+|.++.-+..+..+... ..-+ .|+++..|++.+...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~p 778 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATA 778 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccc
Confidence 589999999987543 344445567999999996543333333221 1111 389999999998643
No 352
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=59.99 E-value=48 Score=31.12 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcCCCchHH---HHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 238 APKPGWKVLDACSAPGNKT---VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt---~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
...+|++||=.|| |+.+ .+++..++ ..+|+++|.+++|++.+++ +|.+
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~ 216 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGAD 216 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCc
Confidence 4557999998876 4444 34555543 3479999999999987654 6764
No 353
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.63 E-value=30 Score=30.46 Aligned_cols=81 Identities=11% Similarity=0.137 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCe-EEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKG-KIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g-~i~a-~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
++.+||=.|+ .|+.+.+++..+...| +|+. .+.+..+.+.+.+.++..+. ++.++.+|..+...- ...|
T Consensus 3 ~~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3556775554 6888888887665444 6655 46677777777777766553 577888888765421 1123
Q ss_pred ceEEEEEEeccc
Q 019802 312 SEVSLIFCIFTW 323 (335)
Q Consensus 312 d~V~~IllD~~c 323 (335)
..++.|+..++.
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 346667766543
No 354
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.97 E-value=22 Score=32.73 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd~ 313 (335)
+.+||=. -|.||.+.++++.+. .+.+|++++.+..+++.+.+.+...+. .+.++..|..+...-. ..+..
T Consensus 40 ~k~vlIt-GasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLT-GASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEe-CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4566644 457888888887653 346899999999998888877776654 4678888887654211 12345
Q ss_pred EEEEEEecc
Q 019802 314 VSLIFCIFT 322 (335)
Q Consensus 314 V~~IllD~~ 322 (335)
++.++..+.
T Consensus 118 id~li~~AG 126 (293)
T PRK05866 118 VDILINNAG 126 (293)
T ss_pred CCEEEECCC
Confidence 566666544
No 355
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.56 E-value=29 Score=30.41 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd~ 313 (335)
+..||=.| |.|+.+.+++..+ ....+|+.++.++.+++...+.++..+. ++.++..|..+...- ...|..
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 55677666 5789999888754 3446899999999888777666665553 578888998765421 112346
Q ss_pred EEEEEEeccc
Q 019802 314 VSLIFCIFTW 323 (335)
Q Consensus 314 V~~IllD~~c 323 (335)
++.|+..++.
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 7777776544
No 356
>PRK09291 short chain dehydrogenase; Provisional
Probab=58.48 E-value=26 Score=31.10 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=51.0
Q ss_pred CEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc-eEEEEEEe
Q 019802 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS-EVSLIFCI 320 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd-~V~~IllD 320 (335)
..||=.| |+|+.+.+++..+. ...+|++.+.++...+.+.+.....+. ++.++.+|..+...-...++ .++.|+..
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 4566454 47888888877653 346899999998888887777766665 47888888877542111111 45556665
Q ss_pred cc
Q 019802 321 FT 322 (335)
Q Consensus 321 ~~ 322 (335)
+.
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 43
No 357
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=58.39 E-value=23 Score=32.24 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHc---C-CCeEEEEEeCCH--------------------------HHHHHHHHHHHHhC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALM---K-GKGKIVACELNK--------------------------ERVRRLKDTIKLSG 290 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~---~-~~g~i~a~D~~~--------------------------~rl~~~~~~~~~~g 290 (335)
-.+.|+++|+-.|+-+..++..+ + .+.+|+++|.=+ --++.+++|+.+.|
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34579999999999887766554 2 345788887411 13667788888888
Q ss_pred C--CcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802 291 A--ANIEVLHGDFLNLDPKDPAYSEVSLIFCIF 321 (335)
Q Consensus 291 ~--~ni~~~~~D~~~~~~~~~~fd~V~~IllD~ 321 (335)
+ +++.++.|.+.+.-+.. .-+.|..+.+|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~-p~~~IAll~lD~ 185 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDA-PIERIALLHLDC 185 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC--TT--EEEEEE--
T ss_pred CCcccEEEECCcchhhhccC-CCccEEEEEEec
Confidence 6 57999999997644332 245666677763
No 358
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.26 E-value=26 Score=29.45 Aligned_cols=66 Identities=23% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 307 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~ 307 (335)
.+..+.+|+|+|-|..-.+.++.- -..-+++++++.-....+-..-|.|+. ...+...|.-+.+..
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 455789999999999988777652 235688999999998888888888874 356666666555543
No 359
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=58.18 E-value=30 Score=31.95 Aligned_cols=41 Identities=17% Similarity=0.020 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~ 284 (335)
...+||-=|||-|..+..+|.+ +-.+.++|.|-.|+-...-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHH
Confidence 4568999999999999999987 4689999999999755444
No 360
>PRK08339 short chain dehydrogenase; Provisional
Probab=57.38 E-value=67 Score=28.87 Aligned_cols=82 Identities=11% Similarity=0.208 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCce
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSE 313 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~------~~fd~ 313 (335)
.|..+|=.| |.||.+..+++.+. ...+|+.++.++.+++.+.+.+....-.++.++..|..+...-. ..|..
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTA-SSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 355666555 45777887777653 34589999999999888877776542235788889988754211 12445
Q ss_pred EEEEEEeccc
Q 019802 314 VSLIFCIFTW 323 (335)
Q Consensus 314 V~~IllD~~c 323 (335)
+|.++..+..
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 6666665543
No 361
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=57.11 E-value=16 Score=33.30 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=36.7
Q ss_pred cCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-----CCCCCCCCceEEEEEEeccc
Q 019802 249 CSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-----LDPKDPAYSEVSLIFCIFTW 323 (335)
Q Consensus 249 cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~-----~~~~~~~fd~V~~IllD~~c 323 (335)
..=||+-.+. +.++..+-+++.+|+++.-.+.+++++.+ .+.|.+.+.|+-+ +|+...+ -.||+|||.
T Consensus 63 ~~YPGSP~ia-~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP~~rR----glVLIDPpY 135 (245)
T PF04378_consen 63 RFYPGSPAIA-ARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPPPERR----GLVLIDPPY 135 (245)
T ss_dssp -EEE-HHHHH-HHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S-TTS-----EEEEE----
T ss_pred CcCCCCHHHH-HHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCCCCCC----eEEEECCCC
Confidence 3446665443 34556678999999999999999999885 3579999999855 4443321 248999985
Q ss_pred c
Q 019802 324 M 324 (335)
Q Consensus 324 s 324 (335)
-
T Consensus 136 E 136 (245)
T PF04378_consen 136 E 136 (245)
T ss_dssp -
T ss_pred C
Confidence 3
No 362
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=56.86 E-value=14 Score=29.18 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=28.3
Q ss_pred CchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 252 PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 252 pG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
-|..+.++|..++ .+|+++|.++.|++.++ ++|..
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~ 36 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGAD 36 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTES
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhccc
Confidence 4777889998876 89999999999988765 46754
No 363
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=56.72 E-value=10 Score=39.38 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEEE
Q 019802 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIFC 319 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~Ill 319 (335)
.+|+=+|+|.=|. .+++.+.. +-.++++|.|+++++.+++ .| ..++.+|+++.+. .....+..+.+++
T Consensus 401 ~~vII~G~Gr~G~--~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQ--IVGRLLLSSGVKMTVLDHDPDHIETLRK----FG---MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHH--HHHHHHHhCCCCEEEEECCHHHHHHHHh----cC---CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 4566666665554 44554433 3479999999999998865 34 4689999988753 1122334444444
No 364
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=56.67 E-value=7.6 Score=35.96 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~ 313 (335)
..|..++|.|||-|--+. .++...++++|++..-+..++ +.|.. .+..+|+..++..+.+||.
T Consensus 44 ~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak----~~~~~--~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAK----RSGGD--NVCRADALKLPFREESFDA 106 (293)
T ss_pred CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccc----cCCCc--eeehhhhhcCCCCCCcccc
Confidence 348899999999997643 234567899999877555433 22322 6788999999998888875
No 365
>PRK05867 short chain dehydrogenase; Provisional
Probab=56.52 E-value=63 Score=28.62 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.|..+|=.|+ .||.+.++++.+. ...+|+.++.++.+++.+.+.++..+. ++.++..|..+...- ...|.
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGG-KVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4667776665 5677887777653 345899999999998888887776663 577888888765421 11244
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.++..+..
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 56666665543
No 366
>PRK06138 short chain dehydrogenase; Provisional
Probab=56.47 E-value=20 Score=31.59 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+.++|=.| |.|+.+.++++.+- ...+|+.++.+...++...+.+. .+. ++.++.+|..+..
T Consensus 5 ~k~~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~-~~~~~~~D~~~~~ 66 (252)
T PRK06138 5 GRVAIVTG-AGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGG-RAFARQGDVGSAE 66 (252)
T ss_pred CcEEEEeC-CCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCC-eEEEEEcCCCCHH
Confidence 45666444 46889998887553 33589999999888777666655 343 4788899987754
No 367
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=56.17 E-value=18 Score=33.73 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd 312 (335)
.+.+||=.| |.||.+.+++..+. ...+|+.++.+..+.+.+.+.+...+ .++.++..|..+...-. ..+.
T Consensus 5 ~~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 355677555 56888888887553 34589999999888877666554222 25788888987755211 1233
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.++..+.-
T Consensus 83 ~iD~li~nAg~ 93 (322)
T PRK07453 83 PLDALVCNAAV 93 (322)
T ss_pred CccEEEECCcc
Confidence 46777776653
No 368
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=56.13 E-value=57 Score=28.95 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
+..||=.| |.|+.+.+++..+. .+.+|+.+|.+...++.+.+.+... +-.++.++..|..+...- ...|.
T Consensus 2 ~k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34677666 56888888876653 3458999999988887776655432 323578888888764321 12344
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.|+..+..
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 56666665543
No 369
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=55.74 E-value=12 Score=38.63 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=42.5
Q ss_pred EEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEEE
Q 019802 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIFC 319 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~Ill 319 (335)
+|+=+| -|..+.++++.+. .+..++++|.++++++.+++ .| ..++.+|+++... .....+..+.+++
T Consensus 402 ~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 402 QVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG---YKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC---CeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 455444 5555556666543 34589999999999998764 35 4689999988653 2223444444544
No 370
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.52 E-value=72 Score=27.92 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~ 304 (335)
+|.++|=.|+ .|+.+.++++.+. ...+|+.+|.++.+++.+.+.+...+. ++.++..|..+.
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 66 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDE 66 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCH
Confidence 4677886664 6788888877553 335799999999988887777766554 577888887664
No 371
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=55.30 E-value=18 Score=33.55 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
.|.+|| +.-|+|..+.|++..+. .+.+|++...+....+.+.+.....+. .+++++.+|..+...-...++.++.|+
T Consensus 4 ~~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 4 GGKLVC-VTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 355666 66778999999987654 334787665554443333333222222 358889999877543222233455555
Q ss_pred Eecc
Q 019802 319 CIFT 322 (335)
Q Consensus 319 lD~~ 322 (335)
--+.
T Consensus 83 h~A~ 86 (322)
T PLN02986 83 HTAS 86 (322)
T ss_pred EeCC
Confidence 5443
No 372
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=55.28 E-value=74 Score=28.11 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.|.+||=.| |.|+.+..++..+. .+.+|+.++.++..++.+.+.++..|. ++.++..|..+..
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 73 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEE 73 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHH
Confidence 467788666 56777887776543 346899999999888888877777664 4778888887644
No 373
>PLN02214 cinnamoyl-CoA reductase
Probab=55.19 E-value=24 Score=33.36 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHH-HHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRL-KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~-~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il 318 (335)
++.+||=.|+ +|..+.|++..+- .+.+|++++.+....... ...+.. +...++++.+|..+...-...+..++.|+
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-GKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 4667886555 7999999987653 335899988876543221 112211 12357888899877543222233344444
Q ss_pred Ee
Q 019802 319 CI 320 (335)
Q Consensus 319 lD 320 (335)
--
T Consensus 87 h~ 88 (342)
T PLN02214 87 HT 88 (342)
T ss_pred Ee
Confidence 43
No 374
>PRK07478 short chain dehydrogenase; Provisional
Probab=55.17 E-value=30 Score=30.75 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd~ 313 (335)
+..+|=. -|.||.+.++++.+. ...+|+..+.++..++.+.+.++..+. ++.++..|..+...- ...|..
T Consensus 6 ~k~~lIt-Gas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIIT-GASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEe-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 5567744 455788888776553 345899999999999888888777664 577888888775421 112446
Q ss_pred EEEEEEecccc
Q 019802 314 VSLIFCIFTWM 324 (335)
Q Consensus 314 V~~IllD~~cs 324 (335)
+|.++..+..+
T Consensus 84 id~li~~ag~~ 94 (254)
T PRK07478 84 LDIAFNNAGTL 94 (254)
T ss_pred CCEEEECCCCC
Confidence 66777766543
No 375
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=55.02 E-value=31 Score=31.62 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~ 291 (335)
-.+|+.|||--+|.|....+...+ + ...+++|+++.=++.+.+++.....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~-~--r~~ig~e~~~~y~~~~~~r~~~~~~ 269 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNL-G--RRFIGIEINPEYVEVALKRLQEGLN 269 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHc-C--CceEEEecCHHHHHHHHHHHHhhcc
Confidence 568999999999999988766554 2 4688999999999999999887543
No 376
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=54.91 E-value=21 Score=33.80 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+.+||=.| |+|..+.++++.+... .+|++++.+......+...+.. + .+++++.+|..+..
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-G-DRLRLFRADLQEEG 71 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-C-CeEEEEECCCCCHH
Confidence 366788555 5799999999876433 4899888877655544333322 2 35888889987654
No 377
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=54.75 E-value=50 Score=33.00 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=55.9
Q ss_pred CCCC-EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802 240 KPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (335)
Q Consensus 240 ~~g~-~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~ 313 (335)
.+-. ++|-+|||.=-.+.|+-+- +-..|+.+|+|+-.++.+...-. ....-+.+...|...+.+++++||.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdi 117 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDI 117 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeE
Confidence 3445 8999999998777777553 34579999999999988776654 3334588999999999999999985
No 378
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=54.63 E-value=48 Score=29.19 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802 240 KPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (335)
Q Consensus 240 ~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~ 284 (335)
.+|++||..|+|+ |-.+.+++..++ .+|++++.++.+.+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 7899999999886 555566666643 689999999988777643
No 379
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=54.01 E-value=64 Score=28.02 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+.+||=.|+ .|+.+.++++.+. ....|+.++.++.+.+.+...++..+. ++.++..|..+..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 67 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDEA 67 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCHH
Confidence 457775554 7999888887653 234699999999888877777766554 4777888887644
No 380
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=53.96 E-value=16 Score=33.08 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCC-------CeEEEEEeCCHHHHHHHHHHHHH
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTIKL 288 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~-------~g~i~a~D~~~~rl~~~~~~~~~ 288 (335)
.-.|+++|+|.|..+..+...+.. ..+++-+|+|+...+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 358999999999999999887653 25899999999998888888765
No 381
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=53.93 E-value=58 Score=29.92 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCchH----HHHHHHHcCC------CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 242 GWKVLDACSAPGNK----TVHLAALMKG------KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 242 g~~VLD~cagpG~k----t~~la~~~~~------~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
+-..+.+..+||+. |..++..+.+ =.++.+.|.+...++..-..+..+|++||-++.||...
T Consensus 28 ~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~ 99 (272)
T TIGR00676 28 DPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPK 99 (272)
T ss_pred CCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 34578899999974 4445544442 14789999999999998889999999999999999864
No 382
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=53.60 E-value=23 Score=28.76 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHH
Q 019802 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286 (335)
Q Consensus 239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~ 286 (335)
--.+.+||=+|||.-+.+...+-.-.+-.+|+-+..+.+|.+.+.+.+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 346889999999665555433322234467999999999988888777
No 383
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.50 E-value=52 Score=29.46 Aligned_cols=81 Identities=10% Similarity=0.017 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagp-G~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.|..+|=.|++. +|.+..+++.+. ...+|+.++.++...+.+++..+..+ .+.++..|..+...- ...|
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 467899999988 488888887653 33578888888655444544444443 345677888765421 1235
Q ss_pred ceEEEEEEeccc
Q 019802 312 SEVSLIFCIFTW 323 (335)
Q Consensus 312 d~V~~IllD~~c 323 (335)
..+|.++..+..
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 566777766644
No 384
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=52.56 E-value=92 Score=28.95 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~ 291 (335)
+|.+||=+|||--.++...+-...+..+|+-+..+..|.+.+.+.+...+.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~ 175 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA 175 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc
Confidence 478899999988888876654433445899999999999999999987764
No 385
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=52.11 E-value=49 Score=30.47 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=35.6
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 237 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 237 l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
..+.++++||..++|+ |..+.+++..++ .+|++.+.++.+.+.+++ +|++
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~ 211 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGAD 211 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCC
Confidence 3467899999876543 556667777654 569999999998877643 5664
No 386
>PLN02780 ketoreductase/ oxidoreductase
Probab=52.03 E-value=56 Score=30.62 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLN 303 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~ 303 (335)
.|..+|=.| |+||.+.+++..+. .+.+|+.++.++++++.+.+.++.. +-..+..+..|..+
T Consensus 52 ~g~~~lITG-As~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTG-PTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeC-CCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 366777666 57788888887653 3358999999999999888777653 22246677777763
No 387
>PRK08643 acetoin reductase; Validated
Probab=51.80 E-value=61 Score=28.68 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
..+| +.-|.|+.+.++++.+. ...+|+.++.+..+++.+...+...+. ++.++..|..+..
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 64 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRD 64 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence 4555 45577888888887664 335899999999988888887776654 5778888887754
No 388
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=51.43 E-value=51 Score=30.58 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC--CCeEEEEEeCCH---HHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNK---ERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~--~~g~i~a~D~~~---~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
.+.+||=+||| |.+..++..+. +-.+|+.++.+. ++.+.+.+.+...+- .+.+...|..
T Consensus 125 ~~k~vlI~GAG--GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~-~~~~~~~d~~ 188 (289)
T PRK12548 125 KGKKLTVIGAG--GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVP-ECIVNVYDLN 188 (289)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCC-CceeEEechh
Confidence 46788888885 66655554332 223599999986 566666555543322 2333444443
No 389
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.96 E-value=27 Score=30.60 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=44.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVAC-ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~-D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+..||=.| |+|+.+.+++..+. ...+|+.+ +.++..++.+.+.+...+. ++.+...|..+..
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 68 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGG-DAIAVKADVSSEE 68 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence 34666555 57888888887543 33578888 9998888877777766443 5788999998755
No 390
>PRK06182 short chain dehydrogenase; Validated
Probab=50.91 E-value=21 Score=32.17 Aligned_cols=74 Identities=8% Similarity=0.023 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-------CCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-------AYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~-------~fd~ 313 (335)
+..|| +.-|.|+.+.++++.+. .+.+|++++.++.+++.+.. . ++.++.+|..+...-.. .+..
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45666 44467889999988663 34589999999887765432 2 36778888877542111 1335
Q ss_pred EEEEEEeccc
Q 019802 314 VSLIFCIFTW 323 (335)
Q Consensus 314 V~~IllD~~c 323 (335)
++.++..++-
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 5666665543
No 391
>PLN02650 dihydroflavonol-4-reductase
Probab=50.88 E-value=20 Score=33.78 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=40.8
Q ss_pred CEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~ 305 (335)
.+|| +.-|+|..+.|+++.+-. ..+|++++.+......+.......+. .++.++.+|..+..
T Consensus 6 k~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~ 69 (351)
T PLN02650 6 ETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEG 69 (351)
T ss_pred CEEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChh
Confidence 4566 666789999999986643 34898888876665554433222232 24788889987754
No 392
>PRK07109 short chain dehydrogenase; Provisional
Probab=50.85 E-value=97 Score=29.16 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.+..||=.| |.||.+.++++.+. ...+|+.++.++.+++.+.+.++..|. ++.++..|..+...- ...|.
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 355666444 67888888877653 345899999999999988888887775 577888898775421 11244
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.++..+..
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 56666665544
No 393
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=50.80 E-value=60 Score=29.09 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=33.0
Q ss_pred HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~ 284 (335)
...+.+|+.||=.++|+ |..+.++|..++- .+|++++.++++++.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHH
Confidence 45677899998886544 4444566666542 249999999999875554
No 394
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.51 E-value=12 Score=35.79 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=26.4
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~ 287 (335)
..|||+|+|||.-...+-...+.--.++-++.|+. ++.+-..++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~ 158 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLA 158 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHH
Confidence 45999999999876655555443334555666654 333333333
No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=50.01 E-value=23 Score=34.70 Aligned_cols=57 Identities=28% Similarity=0.300 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
..+|+=+|+ |..+.++++.+.. +..|+.+|.++++++.+++.. .++.++.+|+.+..
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~ 288 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQE 288 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHH
Confidence 466776666 6666667766543 468999999999998877653 24668899997654
No 396
>PRK08703 short chain dehydrogenase; Provisional
Probab=49.75 E-value=83 Score=27.52 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
++.+||=.| |.|+.+.+++..+. .+.+|+.++.++.+++.+.+.+...+-..+.++..|..+
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 456788776 57888888886554 346899999999988888777766554445667777654
No 397
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=49.21 E-value=65 Score=30.64 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHc--------C-------CCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcE--EEEec
Q 019802 242 GWKVLDACSAPGNKTVHLAALM--------K-------GKGKIVACELNKERVRRLKDTIKLSG-----AANI--EVLHG 299 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~--------~-------~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni--~~~~~ 299 (335)
.-+|+|+||+.|..|+.+...+ . +.-+|+-.|.=.+=...+-..+.... ..++ .-+-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 3489999999999998776532 1 23588999985554444444333321 2233 23344
Q ss_pred cCCCCCCCCCCCceEEEEEEeccccccccccc
Q 019802 300 DFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGF 331 (335)
Q Consensus 300 D~~~~~~~~~~fd~V~~IllD~~cs~~g~~~~ 331 (335)
.+-.--+++++ ||+.+|...+||-
T Consensus 97 SFy~rLfP~~S--------vh~~~Ss~alHWL 120 (334)
T PF03492_consen 97 SFYGRLFPSNS--------VHFGHSSYALHWL 120 (334)
T ss_dssp -TTS--S-TT---------EEEEEEES-TTB-
T ss_pred hhhhccCCCCc--------eEEEEEechhhhc
Confidence 55433334444 5677888888774
No 398
>PLN02427 UDP-apiose/xylose synthase
Probab=49.12 E-value=18 Score=34.71 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCC--eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~--g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
..+|| +--|+|..+.|+++.+-.. .+|+++|.+..+...+.......-..+++++.+|..+..
T Consensus 14 ~~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~ 78 (386)
T PLN02427 14 PLTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDS 78 (386)
T ss_pred CcEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChH
Confidence 45788 6667999999999876433 489999987665543321100000135889999987654
No 399
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=48.68 E-value=65 Score=30.17 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=35.8
Q ss_pred HcCCCCCCEEEEEcCCCchH-HHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802 236 ALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~k-t~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n 293 (335)
...+++|++||=.|+|+-|. +.++|..++ .+|++++.+++|++.+ +++|.+.
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCce
Confidence 35678899999888654332 245555543 4799999999997655 4478753
No 400
>PRK06139 short chain dehydrogenase; Provisional
Probab=48.29 E-value=95 Score=29.27 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+..|| +.-|.||.+.++++.+. ...+|+.++.++.+++.+.+.++..|. ++.++..|..+..
T Consensus 6 ~~k~vl-ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~ 69 (330)
T PRK06139 6 HGAVVV-ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDAD 69 (330)
T ss_pred CCCEEE-EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHH
Confidence 455666 44557888888887553 346899999999999999888887775 4677788887644
No 401
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=47.70 E-value=29 Score=36.23 Aligned_cols=35 Identities=6% Similarity=0.006 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC------C-----CeEEEEEeCCH
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK------G-----KGKIVACELNK 276 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~------~-----~g~i~a~D~~~ 276 (335)
.-+|+|+|=|+|..+....+... + .-+++++|.++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 35899999999998887776551 1 35899999765
No 402
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=47.67 E-value=72 Score=28.98 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=32.7
Q ss_pred cCCCCCCEEEEEcCCCchHHH---HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 237 LAPKPGWKVLDACSAPGNKTV---HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 237 l~~~~g~~VLD~cagpG~kt~---~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
....+|++||=.|+| +.+. +++..++ ..+|+++|.++.|++.+++ +|.+
T Consensus 116 ~~~~~g~~VlV~G~G--~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~ 167 (280)
T TIGR03366 116 AGDLKGRRVLVVGAG--MLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGAT 167 (280)
T ss_pred ccCCCCCEEEEECCC--HHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCc
Confidence 455689999988664 4443 4444432 2358999999999877654 5663
No 403
>PRK06125 short chain dehydrogenase; Provisional
Probab=47.56 E-value=1.2e+02 Score=26.93 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+..||=.| |.|+.+.+++..+. ...+|++++.++.+++.+.+.+....-.++.++..|..+..
T Consensus 6 ~~k~vlItG-~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~ 70 (259)
T PRK06125 6 AGKRVLITG-ASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPE 70 (259)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHH
Confidence 356677555 57778888776553 23589999999999888877776543335778888887643
No 404
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=47.23 E-value=1.1e+02 Score=27.24 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.+.++|=.|++ |+.+.+++..+ ....+|+..+.++.+++.+.+.++..|. ++.++..|..+...- ...+.
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45567755554 66777776544 3346899999999999888888877664 477888998765421 11233
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
.++.++..+..+
T Consensus 87 ~id~li~~ag~~ 98 (265)
T PRK07097 87 VIDILVNNAGII 98 (265)
T ss_pred CCCEEEECCCCC
Confidence 455666665543
No 405
>PRK06196 oxidoreductase; Provisional
Probab=46.90 E-value=67 Score=29.75 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.|..||=.| |.||.+.++++.+. .+.+|+.++.++.+++.+.+.+. ++.++.+|..+...- ...+.
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 456777555 56889998887654 33589999999888776655443 367788888775421 12345
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
.++.++..++.+
T Consensus 99 ~iD~li~nAg~~ 110 (315)
T PRK06196 99 RIDILINNAGVM 110 (315)
T ss_pred CCCEEEECCCCC
Confidence 677777776643
No 406
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=46.83 E-value=20 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHH
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~ 280 (335)
.|.+|||+|||+|-...-+... +...+...|.+..=++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhh--ccceeeeEecchhhee
Confidence 5889999999999998866543 3468889998877664
No 407
>PRK07063 short chain dehydrogenase; Provisional
Probab=46.23 E-value=1.2e+02 Score=26.87 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~ 305 (335)
.+.+||-.|+ .||.+.++++.+. ...+|+.++.++.+++.+.+.+...+ -.++.++..|..+..
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAA 71 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHH
Confidence 3567886665 5788888887553 34589999999999888877776521 125778888887754
No 408
>PRK05717 oxidoreductase; Validated
Probab=45.88 E-value=82 Score=27.91 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd~ 313 (335)
|.+||=.|+ .|+.+.++++.+. ...+|+.+|.+..+...+.+ ..+ .++.++..|..+...- ...|..
T Consensus 10 ~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 10 GRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG-ENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC-CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 567775554 6888998888764 33589999998776655433 233 2477888888775421 112334
Q ss_pred EEEEEEecccc
Q 019802 314 VSLIFCIFTWM 324 (335)
Q Consensus 314 V~~IllD~~cs 324 (335)
++.++..+...
T Consensus 85 id~li~~ag~~ 95 (255)
T PRK05717 85 LDALVCNAAIA 95 (255)
T ss_pred CCEEEECCCcc
Confidence 55566665544
No 409
>PRK07890 short chain dehydrogenase; Provisional
Probab=45.48 E-value=1.4e+02 Score=26.28 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.+.+||=. -|.|+.+.+++..+- ...+|+.++.++..++.+.+.+...+. ++.++..|..+...- ...|.
T Consensus 4 ~~k~vlIt-Ga~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVS-GVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEE-CCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 35677744 457888888887654 345899999999988888777766554 578889998764421 11244
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.|+..+..
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 56666665543
No 410
>PRK06197 short chain dehydrogenase; Provisional
Probab=45.33 E-value=1.1e+02 Score=28.15 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.|..|| +.-|.||.+.++++.+.. +.+|+.++.+..+.+.+.+.+... +-.++.++..|..+...- ...|
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777 455678999999876543 358889999988877766665543 223578888998776521 1124
Q ss_pred ceEEEEEEeccc
Q 019802 312 SEVSLIFCIFTW 323 (335)
Q Consensus 312 d~V~~IllD~~c 323 (335)
..++.++..+..
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 456777776643
No 411
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.99 E-value=76 Score=28.42 Aligned_cols=82 Identities=9% Similarity=-0.000 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagp-G~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.|..+|=.|++. +|.+..+++.+. ...+|+.++.+....+.+++..+...-.++.++..|..+...- ...|
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467888888884 899998887654 3357887765432223333333333223577788888775421 1235
Q ss_pred ceEEEEEEecc
Q 019802 312 SEVSLIFCIFT 322 (335)
Q Consensus 312 d~V~~IllD~~ 322 (335)
..+|.++..+.
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 56666665543
No 412
>PRK07774 short chain dehydrogenase; Provisional
Probab=44.79 E-value=1.2e+02 Score=26.65 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd 312 (335)
.+.+||=. -|.|+.+.+++..+. .+.+|+.++.++..++.+.+.+...+. ++.++..|..+...-. ..+.
T Consensus 5 ~~k~vlIt-Gasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVT-GAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG-TAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 35567744 477899999887653 345899999998877777666654432 4667888887654210 1123
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.|+..++.
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 45566665554
No 413
>PRK08278 short chain dehydrogenase; Provisional
Probab=44.61 E-value=35 Score=30.89 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHH-------HHHHHHHHHHHhCCCcEEEEeccCCCCCCCC----
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKE-------RVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---- 308 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~-------rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~---- 308 (335)
.+..+|=. -|.|+.+.++++.+. .+.+|+.++.+.. .++.+.+.+...|. ++.++..|..+...-.
T Consensus 5 ~~k~vlIt-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFIT-GASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHH
Confidence 35567744 447888888887653 3458888888654 24444455554444 5778889987765211
Q ss_pred ---CCCceEEEEEEecccc
Q 019802 309 ---PAYSEVSLIFCIFTWM 324 (335)
Q Consensus 309 ---~~fd~V~~IllD~~cs 324 (335)
..|..++.|+..+...
T Consensus 83 ~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 83 KAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHhCCCCEEEECCCCc
Confidence 1233556677666543
No 414
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=44.30 E-value=51 Score=31.96 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=34.2
Q ss_pred cCCCCCCEEEEEc-CC-CchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHH
Q 019802 237 LAPKPGWKVLDAC-SA-PGNKTVHLAALMK-GKGKIVACELNKERVRRLKDT 285 (335)
Q Consensus 237 l~~~~g~~VLD~c-ag-pG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~ 285 (335)
..+++|++||=.| +| -|..+.+++..++ +..+|+++|.++.|++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4567899988775 33 3334445666543 224799999999999988775
No 415
>PRK05876 short chain dehydrogenase; Provisional
Probab=44.16 E-value=1.3e+02 Score=27.20 Aligned_cols=81 Identities=11% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.|..||=.|+ .||.+.++++.+. ...+|+.+|.++..++.+.+.++..|. ++.++..|..+...- ...|.
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3567775555 5888888887654 335899999999888877777765554 477888888775421 11233
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.++-.+..
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 45666666544
No 416
>PRK07062 short chain dehydrogenase; Provisional
Probab=44.11 E-value=1.4e+02 Score=26.60 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.|..+|=.| |.|+.+.++++.+. ...+|+.++.++.+++.+.+.+.... -.++.++..|..+...- ...|
T Consensus 7 ~~k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 356777666 55777777776653 44689999999999888777666542 12577788888775421 1235
Q ss_pred ceEEEEEEeccc
Q 019802 312 SEVSLIFCIFTW 323 (335)
Q Consensus 312 d~V~~IllD~~c 323 (335)
..++.++..+..
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 556666665543
No 417
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=44.03 E-value=45 Score=32.52 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=42.4
Q ss_pred CEEEEEcCCCchHHHHHHHHc--CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~--~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+||=+|| |+.+...+..+ +++++|+..|.+..+++.+...... .+++.+.|+.+.+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~ 60 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVD 60 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChH
Confidence 35777888 66666666543 2337999999999999988776432 6888999998875
No 418
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=43.81 E-value=77 Score=29.94 Aligned_cols=51 Identities=27% Similarity=0.275 Sum_probs=36.7
Q ss_pred cCCCCCCEEEEEcC--CCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 237 LAPKPGWKVLDACS--APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 237 l~~~~g~~VLD~ca--gpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
..+++|++||=.|+ |-|..+.++|..++ .+|++++.++++.+.+++ .+|.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~ 206 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFD 206 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCC
Confidence 45788999987776 24556667777754 579999999998777652 25764
No 419
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=43.76 E-value=1.2e+02 Score=24.60 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCCchHHHHHHHHcC--CCeEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCceEEEEE
Q 019802 250 SAPGNKTVHLAALMK--GKGKIVACELN--KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVSLIF 318 (335)
Q Consensus 250 agpG~kt~~la~~~~--~~g~i~a~D~~--~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd~V~~Il 318 (335)
-|.||.+..++..+- +...|+.+..+ ..+++.+...++..+ .++.++..|+.+...- ...+..++.++
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li 85 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGPLDILI 85 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSSESEEE
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 345777777776543 24588888888 888888888888777 6899999998775421 12344566677
Q ss_pred Eeccccccc
Q 019802 319 CIFTWMIIM 327 (335)
Q Consensus 319 lD~~cs~~g 327 (335)
..++....+
T Consensus 86 ~~ag~~~~~ 94 (167)
T PF00106_consen 86 NNAGIFSDG 94 (167)
T ss_dssp EECSCTTSB
T ss_pred ccccccccc
Confidence 766655433
No 420
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=43.66 E-value=1.4e+02 Score=26.85 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd~ 313 (335)
+..+|=.| |.|+.+.+++..+. ...+|+.++.+...++.+.+.++..|. ++.++..|..+...-. ..|..
T Consensus 10 ~k~vlVtG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 10 GKVAVITG-GGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 55666444 45777777777653 345899999998888877777766554 5778888887654211 12345
Q ss_pred EEEEEEecc
Q 019802 314 VSLIFCIFT 322 (335)
Q Consensus 314 V~~IllD~~ 322 (335)
++.++..+.
T Consensus 88 id~li~~ag 96 (278)
T PRK08277 88 CDILINGAG 96 (278)
T ss_pred CCEEEECCC
Confidence 556665543
No 421
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=43.65 E-value=1.4e+02 Score=25.95 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+.+||=.| |.|+.+.+++..+. ...+|++++.+..++....+.+...+. ++.++.+|..+..
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~ 68 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRA 68 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence 56788555 56888888876543 345899999998888777776665543 5888888987643
No 422
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=43.57 E-value=43 Score=32.82 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=58.7
Q ss_pred cccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802 216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANI 294 (335)
Q Consensus 216 ~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni 294 (335)
..|..|.+..-|..-. ..+. ..|.+|| +.-|+||.+.+++..+. .+.+|++++.++.+++.. ....+. ++
T Consensus 156 ~~~~~~~~~~~d~~~~---ta~s-l~gK~VL-ITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~---~~~~~~-~v 226 (406)
T PRK07424 156 NAYYCGTFTLVDKLMG---TALS-LKGKTVA-VTGASGTLGQALLKELHQQGAKVVALTSNSDKITLE---INGEDL-PV 226 (406)
T ss_pred cceeeeeEEEeehhcC---cccC-CCCCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HhhcCC-Ce
Confidence 4677777777775411 1111 2467788 66688999999987653 446899999987765432 222222 35
Q ss_pred EEEeccCCCCCCCCCCCceEEEEEEecc
Q 019802 295 EVLHGDFLNLDPKDPAYSEVSLIFCIFT 322 (335)
Q Consensus 295 ~~~~~D~~~~~~~~~~fd~V~~IllD~~ 322 (335)
..+..|..+...-...+..+|.++..++
T Consensus 227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAG 254 (406)
T PRK07424 227 KTLHWQVGQEAALAELLEKVDILIINHG 254 (406)
T ss_pred EEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence 6677777664422223445666666554
No 423
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=43.54 E-value=1.1e+02 Score=27.18 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=42.2
Q ss_pred EEEEEcCCCchHHHHHHHHcC-----CCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCC
Q 019802 244 KVLDACSAPGNKTVHLAALMK-----GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLD 305 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~-----~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~ 305 (335)
.||-.|+ .||.+.+++..+. ...+|+.++.++.+++.+.+.++... -.++.++..|..+..
T Consensus 2 ~vlItGa-s~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~ 68 (256)
T TIGR01500 2 VCLVTGA-SRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEA 68 (256)
T ss_pred EEEEecC-CCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHH
Confidence 3555554 5788877776543 34689999999999888887776521 125778888887654
No 424
>PRK06181 short chain dehydrogenase; Provisional
Probab=43.42 E-value=1.4e+02 Score=26.50 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=43.6
Q ss_pred CEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
..|| +.-|+|+.+.+++..+ ..+.+|++++.++...+.+.+.++..+. ++.+...|..+..
T Consensus 2 ~~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~ 63 (263)
T PRK06181 2 KVVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAE 63 (263)
T ss_pred CEEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHH
Confidence 3456 4456788888887644 3446899999998888877777766553 5778888887754
No 425
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=43.33 E-value=1.1e+02 Score=27.21 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=50.8
Q ss_pred EEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCceEE
Q 019802 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVS 315 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd~V~ 315 (335)
+||=.|+ .||.+..+++.+. ...+|+.++.++..++.+.+.++..+ ++.++..|..+...- ...|..++
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4565564 4777887776553 34689999999998888877776554 577888888764321 12345566
Q ss_pred EEEEeccc
Q 019802 316 LIFCIFTW 323 (335)
Q Consensus 316 ~IllD~~c 323 (335)
.++..+..
T Consensus 79 ~li~naG~ 86 (259)
T PRK08340 79 ALVWNAGN 86 (259)
T ss_pred EEEECCCC
Confidence 66666543
No 426
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=42.85 E-value=1.7e+02 Score=27.13 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHH---HHHHHHHHH
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE---RVRRLKDTI 286 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~---rl~~~~~~~ 286 (335)
.+.+||=+|||--+.+...+-...+-.+|+-++.+++ |.+.+.+.+
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~ 171 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 171 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHh
Confidence 4668988988666655433322234468999999854 555555544
No 427
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=42.79 E-value=1.4e+02 Score=26.25 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.|.+||=.| |.|+.+..+++.+. ...+|+..+.++.+++.+.+.++..|. ++.++..|..+...- ...+.
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 466788666 57888888887553 345899999999988888777776654 477888888775421 11233
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.|+..+..
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 45666665544
No 428
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=42.70 E-value=1.5e+02 Score=26.22 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+..||=.| |.|+.+.++++.+. ...+|+.++.+..+++.+...++..+. ++.++..|..+..
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~ 73 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQ 73 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHH
Confidence 367788776 56777777776543 345788899999888888777776654 4677888887654
No 429
>PRK08862 short chain dehydrogenase; Provisional
Probab=42.64 E-value=1.3e+02 Score=26.33 Aligned_cols=79 Identities=4% Similarity=0.103 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.|..+|=.|++. |.+..++..+ ..+.+|+.++.++++++.+.+.++..|. .+.....|..+...- ...|+
T Consensus 4 ~~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGS-VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 356677565555 5566666544 3456899999999999888877777664 356666777654421 12345
Q ss_pred -eEEEEEEec
Q 019802 313 -EVSLIFCIF 321 (335)
Q Consensus 313 -~V~~IllD~ 321 (335)
.+|.++..+
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 566666665
No 430
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=42.20 E-value=1e+02 Score=28.56 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCch----HHHHHHHHcCCC------eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 242 GWKVLDACSAPGN----KTVHLAALMKGK------GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 242 g~~VLD~cagpG~----kt~~la~~~~~~------g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
+-..+.+..|+|+ .|..++..+..+ .++++.|.+...++..-..+..+|+.||-++.||.-.
T Consensus 29 ~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~ 100 (281)
T TIGR00677 29 GPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPH 100 (281)
T ss_pred CCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 3456888888876 455556555422 3789999999888888888899999999999999854
No 431
>PRK07340 ornithine cyclodeaminase; Validated
Probab=42.11 E-value=1.3e+02 Score=28.04 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=46.4
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH-cCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGA 291 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~-~~~~g~i~a~D~~~~rl~~~~~~~~~~g~ 291 (335)
.|.+.+..|......+|+-+|||.=+.+...+-. ..+-.+|..++.++++.+.+.+.++..++
T Consensus 112 ~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~ 175 (304)
T PRK07340 112 VSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGP 175 (304)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 3566777787777889999999877766544432 23445899999999999998888875543
No 432
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=41.80 E-value=44 Score=29.79 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 251 APGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 251 gpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
|-|-.+.++|+.+... ..|+++|.++++++.....- . ....+++|+.+..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~--~---~~~~v~gd~t~~~ 57 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE--L---DTHVVIGDATDED 57 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh--c---ceEEEEecCCCHH
Confidence 5566777777766544 48999999999988733311 1 3678889998755
No 433
>PRK05993 short chain dehydrogenase; Provisional
Probab=41.79 E-value=80 Score=28.53 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+..||=.| |.|+.+.+++..+. .+.+|++++.++..++.+.+ . .+.++..|..+..
T Consensus 4 ~k~vlItG-asggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d~~ 60 (277)
T PRK05993 4 KRSILITG-CSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E---GLEAFQLDYAEPE 60 (277)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C---CceEEEccCCCHH
Confidence 55677555 47899988887653 34689999999888765543 2 3567788887643
No 434
>PRK06114 short chain dehydrogenase; Provisional
Probab=41.67 E-value=1.2e+02 Score=26.86 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNK-ERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~-~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.|..+|=. -|.|+.+.++++.+.. ..+|+.++.+. ..++.+.+.++..+. ++.++..|..+...- ...|
T Consensus 7 ~~k~~lVt-G~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 7 DGQVAFVT-GAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGR-RAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35566644 4677888888876543 35888888864 455666666665553 467788888764421 1224
Q ss_pred ceEEEEEEecc
Q 019802 312 SEVSLIFCIFT 322 (335)
Q Consensus 312 d~V~~IllD~~ 322 (335)
..++.++..+.
T Consensus 85 g~id~li~~ag 95 (254)
T PRK06114 85 GALTLAVNAAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 45566665554
No 435
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.63 E-value=1.4e+02 Score=27.49 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHH------HHHHHHH---HHHhCCCcEEEEeccCCCCCCC-CC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKER------VRRLKDT---IKLSGAANIEVLHGDFLNLDPK-DP 309 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~r------l~~~~~~---~~~~g~~ni~~~~~D~~~~~~~-~~ 309 (335)
...+||-+|=|-=..+.-|+...+ ..+.|+|...+..- ..-+++| ++++|+. .+...|+..+... +-
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl~~~~~~ 133 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSLKFHADL 133 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeEEecccc
Confidence 456777776666666666776655 45566665544332 2223444 5677764 2444566555541 11
Q ss_pred CCceEEEEEEeccccccccc
Q 019802 310 AYSEVSLIFCIFTWMIIMFH 329 (335)
Q Consensus 310 ~fd~V~~IllD~~cs~~g~~ 329 (335)
...+.+.|+.++|-+|.|..
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~ 153 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIK 153 (282)
T ss_pred cccccceEEEcCCCCCCCcc
Confidence 22334459999999999985
No 436
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=41.56 E-value=19 Score=32.90 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----------------------------
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------------------------- 291 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---------------------------- 291 (335)
..|.++||+||||--.- +......--.|+..|..+.-.+.+++-++.-|.
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35889999999994432 222222335799999998888777665544332
Q ss_pred CcEE-EEeccCCCCCCCCC------CCceEEEEEE-eccc
Q 019802 292 ANIE-VLHGDFLNLDPKDP------AYSEVSLIFC-IFTW 323 (335)
Q Consensus 292 ~ni~-~~~~D~~~~~~~~~------~fd~V~~Ill-D~~c 323 (335)
..|+ ++..|..+.++-.. .||.|..++| +.-|
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~ 172 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC 172 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence 0143 77889988765332 3887666665 4444
No 437
>PRK05855 short chain dehydrogenase; Validated
Probab=41.15 E-value=58 Score=32.68 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd~ 313 (335)
+.++|=.| |.||.+.+++..+. .+.+|+.++.+..+++.+.+.++..|. ++.++..|..+...-. ..+..
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 45677444 57888888887664 345799999999999888887777665 6888899998765311 12345
Q ss_pred EEEEEEecccccc
Q 019802 314 VSLIFCIFTWMII 326 (335)
Q Consensus 314 V~~IllD~~cs~~ 326 (335)
++.++..+.....
T Consensus 393 id~lv~~Ag~~~~ 405 (582)
T PRK05855 393 PDIVVNNAGIGMA 405 (582)
T ss_pred CcEEEECCccCCC
Confidence 6667776655433
No 438
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=41.04 E-value=67 Score=30.96 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-------CCeEEEEEeCCHHHHHHHHHHHHHhC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-------GKGKIVACELNKERVRRLKDTIKLSG 290 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-------~~g~i~a~D~~~~rl~~~~~~~~~~g 290 (335)
.-.++++|+|.|.....|...+. +..++.-+|+|++-.++=+++++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 34799999999999998876542 35789999999988888888888654
No 439
>PRK06141 ornithine cyclodeaminase; Validated
Probab=40.74 E-value=1.4e+02 Score=27.93 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=45.6
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHH-HHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (335)
Q Consensus 229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la-~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~ 291 (335)
.|.+.++.|......+|+-+|+|.=+.....+ ..+.+-.+|+.++.++++.+.+.+.++..|.
T Consensus 112 ~sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~ 175 (314)
T PRK06141 112 ASALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF 175 (314)
T ss_pred HHHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 35677777877778899988887666665332 2224456899999999999988888776553
No 440
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=40.45 E-value=22 Score=30.77 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=19.8
Q ss_pred CCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHH
Q 019802 251 APGNKTVHLAALMKG-KGKIVACELNKERVRRLKD 284 (335)
Q Consensus 251 gpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~ 284 (335)
|.|..++.+|..+.. ..+|+++|+++++++.+++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 445555444443332 3599999999999988763
No 441
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=40.20 E-value=1.2e+02 Score=26.78 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+..||=. -|.|+.+.+++..+. ...+|+.+|.+..+++.+.+.+ + .++.++..|..+..
T Consensus 6 ~~~vlIt-Gas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~ 65 (257)
T PRK07067 6 GKVALLT-GAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQD 65 (257)
T ss_pred CCEEEEe-CCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCHH
Confidence 4566644 477888998887664 3358999999988877665443 2 24778888887654
No 442
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=40.20 E-value=44 Score=25.49 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=11.8
Q ss_pred EcCCCchHHHHHHHHc
Q 019802 248 ACSAPGNKTVHLAALM 263 (335)
Q Consensus 248 ~cagpG~kt~~la~~~ 263 (335)
+|||.|.-|..+++.+
T Consensus 4 ~~Cg~G~sTS~~~~ki 19 (96)
T cd05564 4 LVCSAGMSTSILVKKM 19 (96)
T ss_pred EEcCCCchHHHHHHHH
Confidence 7888888777666554
No 443
>PRK06123 short chain dehydrogenase; Provisional
Probab=40.14 E-value=1.4e+02 Score=26.00 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=37.7
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCe-EEEEEe-CCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKG-KIVACE-LNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g-~i~a~D-~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
..+|=.| |.|+.+.++++.+...| .|+..+ .++.+.+.+.+.++..+. ++.++..|..+..
T Consensus 3 ~~~lVtG-~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~ 65 (248)
T PRK06123 3 KVMIITG-ASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGG-EALAVAADVADEA 65 (248)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCC-cEEEEEeccCCHH
Confidence 3566555 56788888877664444 565555 355666666666665553 4667777776643
No 444
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=40.08 E-value=8.6 Score=38.68 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.1
Q ss_pred EEEEcCCCchHHHHHHHH
Q 019802 245 VLDACSAPGNKTVHLAAL 262 (335)
Q Consensus 245 VLD~cagpG~kt~~la~~ 262 (335)
.-|+||||||++-.+.-+
T Consensus 271 FaDvCAGPGGFSEYvLwR 288 (845)
T KOG3673|consen 271 FADVCAGPGGFSEYVLWR 288 (845)
T ss_pred HHhhhcCCCccchhhhhh
Confidence 458999999999866543
No 445
>PRK07074 short chain dehydrogenase; Provisional
Probab=40.04 E-value=1.2e+02 Score=26.81 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=39.6
Q ss_pred CEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.++|= -.|+|+.+.+++..+. ...+|+.++.++.+++.+.+.+. + ..+.++..|+.+..
T Consensus 3 k~ilI-tGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~ 62 (257)
T PRK07074 3 RTALV-TGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG--D-ARFVPVACDLTDAA 62 (257)
T ss_pred CEEEE-ECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHH
Confidence 34553 4456678888887653 33589999999888776655542 2 24778888887755
No 446
>PRK08267 short chain dehydrogenase; Provisional
Probab=39.61 E-value=94 Score=27.55 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=40.1
Q ss_pred EEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+||=.| |+|+.+..+++.+.. ..+|+.++.++..++.+.+... + .++.++++|+.+..
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~ 61 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRA 61 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHH
Confidence 355444 558888888775543 3489999999888777655543 2 35788899987754
No 447
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=39.54 E-value=66 Score=28.74 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHH
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~ 283 (335)
+..+++|..||.|..+..+.. ...+++..|++..=....+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHHH
Confidence 788999999999999987765 2468999999986554443
No 448
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.53 E-value=1.2e+02 Score=28.52 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHH-HcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAA-LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~-~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.|+.||=-|+|.| .+..+|. ......+++.+|++++-.+.-.+.+++.| .++....|..+.+
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~e 99 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDRE 99 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHH
Confidence 3888887776665 4444433 22334578899999988888888888777 6788888887755
No 449
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=39.41 E-value=32 Score=33.70 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=37.7
Q ss_pred EEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~ 304 (335)
+|+=+ |.|..+.++++.+.. +..|+.+|.++++++.+++. . .+.++.+|+.+.
T Consensus 2 ~viIi--G~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~---~~~~~~gd~~~~ 55 (453)
T PRK09496 2 KIIIV--GAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L---DVRTVVGNGSSP 55 (453)
T ss_pred EEEEE--CCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c---CEEEEEeCCCCH
Confidence 34444 458888888886643 45899999999998877652 2 357788888764
No 450
>PRK07832 short chain dehydrogenase; Provisional
Probab=39.41 E-value=89 Score=28.07 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=38.7
Q ss_pred cCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 249 CSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 249 cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.-|.|+.+.++++.+. .+.+|+.++.++..++.+.+.+...+...+.+...|..+..
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYD 63 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHH
Confidence 3456788887776543 34578889998888887777776666544555677876543
No 451
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=39.01 E-value=1.1e+02 Score=25.98 Aligned_cols=88 Identities=8% Similarity=0.098 Sum_probs=48.2
Q ss_pred ecCchHHHHHHHc-C-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802 225 LQGKASSMVAAAL-A-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (335)
Q Consensus 225 iQd~~s~l~~~~l-~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~ 302 (335)
.-|..+..++..+ + ..++.+|+-+||=+-.... .+......+++-+|.+.+ .+.+|- + .++.-|..
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~R--------F~~~~~-~-~F~fyD~~ 74 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRR--------FEQFGG-D-EFVFYDYN 74 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecch--------HHhcCC-c-ceEECCCC
Confidence 3345555555443 3 2456789888775554443 332345668888998843 333343 2 46666665
Q ss_pred CCCCCCCCC-ceEEEEEEecccc
Q 019802 303 NLDPKDPAY-SEVSLIFCIFTWM 324 (335)
Q Consensus 303 ~~~~~~~~f-d~V~~IllD~~cs 324 (335)
....-...+ ...+.|++|||--
T Consensus 75 ~p~~~~~~l~~~~d~vv~DPPFl 97 (162)
T PF10237_consen 75 EPEELPEELKGKFDVVVIDPPFL 97 (162)
T ss_pred ChhhhhhhcCCCceEEEECCCCC
Confidence 533211111 2345699999963
No 452
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=38.82 E-value=1.2e+02 Score=28.99 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=42.0
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~ 303 (335)
...+|+|+|.|..+-++....+ .|-+++.+..-+-.....+. .| |+-+-+|+.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq 232 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQ 232 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC---cceecccccc
Confidence 7899999999999999998643 37788888887777777765 55 5556666654
No 453
>PRK07775 short chain dehydrogenase; Provisional
Probab=38.76 E-value=1.5e+02 Score=26.64 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=43.5
Q ss_pred CEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
..||=.| |.|+.+.++++.+- .+.+|+..+.+..+++.+.+.+...+. ++.++..|..+..
T Consensus 11 ~~vlVtG-a~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 72 (274)
T PRK07775 11 RPALVAG-ASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG-EAVAFPLDVTDPD 72 (274)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence 3566555 57899999887554 335788888888887777766666554 5778888887654
No 454
>PRK09242 tropinone reductase; Provisional
Probab=38.49 E-value=1.9e+02 Score=25.48 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS--GAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~--g~~ni~~~~~D~~~~~ 305 (335)
.|..+|=.|+ .|+.+.+++..+. ...+|+.++.+.+.++.+.+.+... + .++.++..|..+..
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~~ 73 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPE-REVHGLAADVSDDE 73 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCC-CeEEEEECCCCCHH
Confidence 3567776655 6777777776553 3468999999998888887777655 3 25778888887643
No 455
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.45 E-value=1.7e+02 Score=25.98 Aligned_cols=85 Identities=6% Similarity=0.042 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCC-chHHHHHHHHcCC-CeEEEEEeC-----------CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 240 KPGWKVLDACSAP-GNKTVHLAALMKG-KGKIVACEL-----------NKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 240 ~~g~~VLD~cagp-G~kt~~la~~~~~-~g~i~a~D~-----------~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
..|..||=.|++. ||.+.+++..+.. ..+|+..+. ....+..+.+.++..|. ++.++..|..+...
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~ 82 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLTQNDA 82 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHH
Confidence 3577888888875 7888888876543 346776642 23344455666666665 57788888876542
Q ss_pred C-------CCCCceEEEEEEeccccc
Q 019802 307 K-------DPAYSEVSLIFCIFTWMI 325 (335)
Q Consensus 307 ~-------~~~fd~V~~IllD~~cs~ 325 (335)
- ...+..++.++..+.+..
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~ 108 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYST 108 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCC
Confidence 1 112445677888876653
No 456
>PRK07035 short chain dehydrogenase; Provisional
Probab=37.80 E-value=2e+02 Score=25.21 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+..||=. -|.|+.+.+++..+. ...+|+.++.+...++.+.+.+...+. ++.++..|..+..
T Consensus 8 ~k~vlIt-Gas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 70 (252)
T PRK07035 8 GKIALVT-GASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG-KAEALACHIGEME 70 (252)
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHH
Confidence 4556644 456888888877654 234899999999988888877776653 4667778886654
No 457
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=37.73 E-value=1.3e+02 Score=27.93 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCC--eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~--g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
+.++|=.| |++|.+.++++.+... .+|+.++.++.+++.+.+.+...+ .++.++..|..+...- ...+.
T Consensus 3 ~k~vlITG-as~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 3 KPTVIITG-ASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK-DSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 44566444 5678888888765433 488888988888776665554222 2467778888765521 11244
Q ss_pred eEEEEEEecc
Q 019802 313 EVSLIFCIFT 322 (335)
Q Consensus 313 ~V~~IllD~~ 322 (335)
.++.++..++
T Consensus 81 ~iD~lI~nAG 90 (314)
T TIGR01289 81 PLDALVCNAA 90 (314)
T ss_pred CCCEEEECCC
Confidence 5666776654
No 458
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=37.38 E-value=1.5e+02 Score=25.93 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd 312 (335)
.|.+||=.|+ .|+.+.++++.+-.. .+|+.++.++ ...+.+.++..+. ++.++..|..+...-. ..+.
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGA-NTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGR-RFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4667776666 577888888766433 4888898764 3445555555553 4788889987754211 1234
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
.++.++..+...
T Consensus 80 ~~d~li~~ag~~ 91 (248)
T TIGR01832 80 HIDILVNNAGII 91 (248)
T ss_pred CCCEEEECCCCC
Confidence 456666655443
No 459
>PRK05875 short chain dehydrogenase; Provisional
Probab=37.11 E-value=2e+02 Score=25.69 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~ 305 (335)
++.+||=.| |.|+.+.++++.+. ...+|+.++.++.+++...+.+...+. .++.++..|..+..
T Consensus 6 ~~k~vlItG-asg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~ 71 (276)
T PRK05875 6 QDRTYLVTG-GGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDED 71 (276)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHH
Confidence 366788666 45788888887653 335899999998888777666654432 36788888887654
No 460
>PLN02740 Alcohol dehydrogenase-like
Probab=37.03 E-value=1e+02 Score=29.53 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=34.7
Q ss_pred HcCCCCCCEEEEEcCCCchHHHH---HHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 236 ALAPKPGWKVLDACSAPGNKTVH---LAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagpG~kt~~---la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
....++|++||=.|+ |+.+.. +|..++ ..+|+++|.++.|++.+++ +|.+
T Consensus 193 ~~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~ 245 (381)
T PLN02740 193 TANVQAGSSVAIFGL--GAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGIT 245 (381)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCc
Confidence 356788999998875 455543 444432 2369999999999888754 6764
No 461
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=36.72 E-value=1.1e+02 Score=28.93 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=34.1
Q ss_pred HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
...+++|++||=.|+|+ |..+.+++..++ ..+|+++|.+++|++.+++ +|.+
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~ 238 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGAT 238 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCc
Confidence 34578899999887643 222334455432 2369999999999887754 5764
No 462
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.54 E-value=1.5e+02 Score=26.23 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHcCC-CeEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802 241 PGWKVLDACSAP-GNKTVHLAALMKG-KGKIVACELN------------KERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (335)
Q Consensus 241 ~g~~VLD~cagp-G~kt~~la~~~~~-~g~i~a~D~~------------~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~ 306 (335)
.+..||=.|++. ||.+.+++..+.. +.+|+.++.+ ..... +.+.++..+. ++.++..|..+...
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~D~~~~~~ 81 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV-RCEHMEIDLSQPYA 81 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC-eEEEEECCCCCHHH
Confidence 356788888774 7899888876643 3488888876 23333 4444444453 47888889877442
Q ss_pred C-------CCCCceEEEEEEeccc
Q 019802 307 K-------DPAYSEVSLIFCIFTW 323 (335)
Q Consensus 307 ~-------~~~fd~V~~IllD~~c 323 (335)
- ...|..+++|+..+..
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 1 1234456666665543
No 463
>CHL00194 ycf39 Ycf39; Provisional
Probab=36.51 E-value=34 Score=31.84 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=42.3
Q ss_pred EEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802 244 KVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC 319 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill 319 (335)
+|| +.-|+|..+.+++..+ ..+.+|+++..+..+...+. .. +++++.+|..+...-...+..+++|+.
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~----~~---~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK----EW---GAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh----hc---CCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 355 5667999999998655 33458999998876543222 12 468889998775432223444454553
No 464
>PRK06720 hypothetical protein; Provisional
Probab=36.49 E-value=2.6e+02 Score=23.51 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.|..+|-.|++ ||.+..++..+ ....+|+.+|.+...++...+.+...|. .+.++..|..+...- ...|.
T Consensus 15 ~gk~~lVTGa~-~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGG-IGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG-EALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35566655554 55666665533 3346888889888877766666655553 355677777654321 12355
Q ss_pred eEEEEEEeccc
Q 019802 313 EVSLIFCIFTW 323 (335)
Q Consensus 313 ~V~~IllD~~c 323 (335)
.++.++-+++.
T Consensus 93 ~iDilVnnAG~ 103 (169)
T PRK06720 93 RIDMLFQNAGL 103 (169)
T ss_pred CCCEEEECCCc
Confidence 56666666543
No 465
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.44 E-value=1.6e+02 Score=26.67 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagp-G~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.|..||=.|++. +|.+..++..+. ...+|+.++.++...+.+++..+.++.. .++..|..+...- ...|
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHc
Confidence 366788888874 688888887653 3458888888854333444444444533 4677888775521 1235
Q ss_pred ceEEEEEEeccc
Q 019802 312 SEVSLIFCIFTW 323 (335)
Q Consensus 312 d~V~~IllD~~c 323 (335)
..+|.++..+..
T Consensus 82 g~iDilVnnAG~ 93 (274)
T PRK08415 82 GKIDFIVHSVAF 93 (274)
T ss_pred CCCCEEEECCcc
Confidence 566666666653
No 466
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.37 E-value=59 Score=24.79 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=13.2
Q ss_pred EEEEEcCCCchHHHHHHHHc
Q 019802 244 KVLDACSAPGNKTVHLAALM 263 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~ 263 (335)
+|| +|||.|.-|..++..+
T Consensus 5 ~IL-l~C~~G~sSS~l~~k~ 23 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNKM 23 (95)
T ss_pred EEE-EECCCchhHHHHHHHH
Confidence 566 7788887777666554
No 467
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=36.08 E-value=53 Score=29.25 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCC-ceEEEEE
Q 019802 242 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAY-SEVSLIF 318 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~f-d~V~~Il 318 (335)
+.+||=+ .|+|+.+.+++..+ ....+|+++..++.+...... . + .++.++.+|..+... -...+ ..++.|+
T Consensus 17 ~~~ilIt-GasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~-~-~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 17 TKTVFVA-GATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP---Q-D-PSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred CCeEEEE-CCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc---c-C-CceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 4567744 45778888777654 334589888888776543211 1 1 257889999876311 11122 3455666
Q ss_pred Eeccc
Q 019802 319 CIFTW 323 (335)
Q Consensus 319 lD~~c 323 (335)
+.++.
T Consensus 91 ~~~g~ 95 (251)
T PLN00141 91 CATGF 95 (251)
T ss_pred ECCCC
Confidence 55443
No 468
>PRK05650 short chain dehydrogenase; Provisional
Probab=36.00 E-value=2.1e+02 Score=25.53 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=43.4
Q ss_pred EEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+||=. .|+|+.+.+++..+. .+.+|+.++.+..+++.+...++..|- ++.++.+|..+..
T Consensus 2 ~vlVt-GasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~ 62 (270)
T PRK05650 2 RVMIT-GAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRDYS 62 (270)
T ss_pred EEEEe-cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHH
Confidence 35533 457888888876553 345899999999988888777776654 5778888887654
No 469
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=35.98 E-value=93 Score=29.20 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=35.3
Q ss_pred CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEe
Q 019802 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273 (335)
Q Consensus 227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D 273 (335)
|.-|++.. +.++.+|.+||-+=.-.|-.+..++++|++.|.|+.+=
T Consensus 188 d~la~il~-~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~ 233 (299)
T PF04189_consen 188 DTLAQILS-LANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLH 233 (299)
T ss_pred HHHHHHHH-hcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEe
Confidence 44455544 56889999988777777888899999999999877553
No 470
>PRK08589 short chain dehydrogenase; Validated
Probab=35.73 E-value=2e+02 Score=25.86 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
.|.++|= .-|.||.+.+++..+. ...+|+.++.+ .+++.+.+.++..+. ++.++..|..+...- ...|.
T Consensus 5 ~~k~vlI-tGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVI-TGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 3556664 4456777888776553 44689999998 677766666665553 477888888765421 11344
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
.++.++..+...
T Consensus 82 ~id~li~~Ag~~ 93 (272)
T PRK08589 82 RVDVLFNNAGVD 93 (272)
T ss_pred CcCEEEECCCCC
Confidence 566677666543
No 471
>PRK09186 flagellin modification protein A; Provisional
Probab=35.61 E-value=2e+02 Score=25.13 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~-~g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.+.+||=.|+ .|+.+.+++..+. ...+|+.++.++.+++.+.+.+.. .+-..+.++.+|..+...- ...|
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 3566775554 6888888887664 335889999998888777666643 3434566778888774421 1223
Q ss_pred ceEEEEEEec
Q 019802 312 SEVSLIFCIF 321 (335)
Q Consensus 312 d~V~~IllD~ 321 (335)
..++.|+..+
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 4466666655
No 472
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=35.39 E-value=38 Score=32.02 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=39.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHH-HHHHHHHHhC---CCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVR-RLKDTIKLSG---AANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~-~~~~~~~~~g---~~ni~~~~~D~~~~~ 305 (335)
.+.+|| +--|+|..+.|++..+... .+|+++|....... .........+ ..++.++.+|..+..
T Consensus 14 ~~~~vl-VtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (348)
T PRK15181 14 APKRWL-ITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFT 82 (348)
T ss_pred cCCEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHH
Confidence 346777 4556899999998876433 48999998543222 1222211111 235788999998743
No 473
>PRK09135 pteridine reductase; Provisional
Probab=35.39 E-value=2.3e+02 Score=24.50 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~-~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.+..||-.|+ .|+.+.++++.+. .+.+|++++.+ +..++.+...+...+-.++.++.+|..+..
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 70 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPD 70 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence 3567887775 6899999887664 34689999974 556666666665554445788889987754
No 474
>PRK09134 short chain dehydrogenase; Provisional
Probab=35.37 E-value=2e+02 Score=25.35 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~-~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~f 311 (335)
.+.++|=.|+ .|+.+.++++.+. ...+|+.++. +...++.+.+.+...+. ++.++..|..+...-. ..+
T Consensus 8 ~~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 8 APRAALVTGA-ARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGR-RAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3556776664 6888888887654 3346766655 56667666666665553 5778888887644211 123
Q ss_pred ceEEEEEEecc
Q 019802 312 SEVSLIFCIFT 322 (335)
Q Consensus 312 d~V~~IllD~~ 322 (335)
..+|.|+..+.
T Consensus 86 ~~iD~vi~~ag 96 (258)
T PRK09134 86 GPITLLVNNAS 96 (258)
T ss_pred CCCCEEEECCc
Confidence 45666776654
No 475
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=35.32 E-value=76 Score=32.47 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHc--CCCeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDP 306 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~--~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~~ 306 (335)
|.+|| +.-|.|+.+..+..++ .+..+|+-+|.++..+-.+...+.+. +...+.+.-+|.++...
T Consensus 250 gK~vL-VTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~ 316 (588)
T COG1086 250 GKTVL-VTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDR 316 (588)
T ss_pred CCEEE-EeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHH
Confidence 66676 6667799988877654 24479999999999999999988873 54568899999988663
No 476
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=35.31 E-value=81 Score=31.05 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (335)
Q Consensus 240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~ 284 (335)
.+|++|+=+|+|+=|..........+ .+|+.+|+++.|+..+++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHh
Confidence 57999999999997776654433223 489999999999877654
No 477
>PRK06101 short chain dehydrogenase; Provisional
Probab=35.03 E-value=1.3e+02 Score=26.35 Aligned_cols=56 Identities=25% Similarity=0.219 Sum_probs=39.0
Q ss_pred EEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 244 ~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
.|| +.-|+||.+.++++.+.. ..+|+.++.++.+++.+.+. + .++.++.+|..+..
T Consensus 3 ~vl-ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~~ 59 (240)
T PRK06101 3 AVL-ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDHP 59 (240)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCHH
Confidence 344 455679999998876643 35899999998877655432 2 35677888887654
No 478
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=35.02 E-value=1.2e+02 Score=28.17 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=35.8
Q ss_pred HcCCCCCCEEEEEcC--CCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802 236 ALAPKPGWKVLDACS--APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (335)
Q Consensus 236 ~l~~~~g~~VLD~ca--gpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n 293 (335)
...+++|++||=.|+ |-|..+.++|..++ .+|++.+.++++.+.+++. +|.+.
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~ 200 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDD 200 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCce
Confidence 356789999997665 23444456666653 4799999999888777653 46643
No 479
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=34.94 E-value=39 Score=30.10 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=38.5
Q ss_pred CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCceEEEEEE
Q 019802 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVSLIFC 319 (335)
Q Consensus 243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~---~~~~fd~V~~Ill 319 (335)
-++||+||=.....+... +--.|+++|+++. .-.+.+.|+.+.|. +.+.||.|..=||
T Consensus 53 lrlLEVGals~~N~~s~~----~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS----GWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred ceEEeecccCCCCccccc----CceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 489999997555443222 2346999999863 23578899998764 3567887654444
No 480
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=34.90 E-value=47 Score=31.52 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=40.2
Q ss_pred EEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEec
Q 019802 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHG 299 (335)
Q Consensus 246 LD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~ 299 (335)
+|+|.|.-..--.+...+.+ ...+|.|++...+..+++|....+++. |.+++.
T Consensus 107 iDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~ 160 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKV 160 (419)
T ss_pred eeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEe
Confidence 78877765554455555544 889999999999999999999988854 556555
No 481
>PRK12746 short chain dehydrogenase; Provisional
Probab=34.60 E-value=76 Score=27.98 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHcCCCe-EEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 242 GWKVLDACSAPGNKTVHLAALMKGKG-KIVAC-ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~~~g-~i~a~-D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+.+||=.| |.|+.+.++++.+...| +|+.+ ..+...++.....+...+. .+.++..|..+..
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~ 69 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGG-KAFLIEADLNSID 69 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCcCCHH
Confidence 45677555 57999999988664334 55443 5666666555544443332 4778888987754
No 482
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=34.48 E-value=60 Score=28.50 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=50.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEe-CCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCc
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACE-LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D-~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd 312 (335)
+..||-.| |.|+.+.++++.+- ....|+... .++...+.+.+.++..+. ++.++..|..+...-. ..|.
T Consensus 6 ~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 6 GKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGH-DVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56788777 57899998887653 335666543 456666666555555553 5888899987754211 1234
Q ss_pred eEEEEEEecccc
Q 019802 313 EVSLIFCIFTWM 324 (335)
Q Consensus 313 ~V~~IllD~~cs 324 (335)
.++.|+..+...
T Consensus 84 ~id~vi~~ag~~ 95 (247)
T PRK12935 84 KVDILVNNAGIT 95 (247)
T ss_pred CCCEEEECCCCC
Confidence 466677665543
No 483
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.37 E-value=2.2e+02 Score=24.78 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCce
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------~~fd~ 313 (335)
+.+|| +.-|+|+.+.+++..+- ...+|++++.++.+++.+...+.. +. ++.++.+|..+...-. ..+..
T Consensus 5 ~~~vl-ItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAI-VTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GG-RAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45666 44556788888876553 335899999999888877666654 33 4788888887755321 12344
Q ss_pred EEEEEEecccc
Q 019802 314 VSLIFCIFTWM 324 (335)
Q Consensus 314 V~~IllD~~cs 324 (335)
++.|+..+...
T Consensus 82 ~d~vi~~ag~~ 92 (251)
T PRK07231 82 VDILVNNAGTT 92 (251)
T ss_pred CCEEEECCCCC
Confidence 56677665543
No 484
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=34.23 E-value=1.5e+02 Score=28.19 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=35.1
Q ss_pred HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
...+++|++||=.|+|+ |..+.++|..++ ..+|+++|.+++|++.+++ +|.+
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~ 232 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGAT 232 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCC
Confidence 34578899999887643 223345555543 2379999999999887744 5663
No 485
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=34.11 E-value=1.6e+02 Score=27.35 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHcCCCCCCEEEEEcCCCchHHH---HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 235 AALAPKPGWKVLDACSAPGNKTV---HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 235 ~~l~~~~g~~VLD~cagpG~kt~---~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
..+..++|++||=.|+ |+.+. +++..++ ...|+++|.+++|++.++ .+|.+
T Consensus 157 ~~~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~----~~ga~ 210 (339)
T cd08239 157 RRVGVSGRDTVLVVGA--GPVGLGALMLARALG-AEDVIGVDPSPERLELAK----ALGAD 210 (339)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCC
Confidence 3456778999998865 45544 4455543 224999999999887764 45764
No 486
>PRK07791 short chain dehydrogenase; Provisional
Probab=33.99 E-value=2.2e+02 Score=25.88 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCH---------HHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNK---------ERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--- 307 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~---------~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--- 307 (335)
.|..+|=.|+ .||.+..+++.+- ...+|+.+|.+. ..++.+.+.++..|. ++.++..|..+...-
T Consensus 5 ~~k~~lITGa-s~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGA-GGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHHH
Confidence 4667776665 4677777766543 345788888765 666666666655554 466777888764421
Q ss_pred ----CCCCceEEEEEEeccc
Q 019802 308 ----DPAYSEVSLIFCIFTW 323 (335)
Q Consensus 308 ----~~~fd~V~~IllD~~c 323 (335)
...|..++.++..+..
T Consensus 83 ~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 1234556666666543
No 487
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=33.97 E-value=92 Score=29.31 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH
Q 019802 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (335)
Q Consensus 234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~ 288 (335)
...+....|.+|.-+|+|.-+.-..|+. ...+|.++|+++.-+..-+-.++.
T Consensus 56 meam~~g~ghrivtigSGGcn~L~ylsr---~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 56 MEAMQLGIGHRIVTIGSGGCNMLAYLSR---APARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HHHHhcCCCcEEEEecCCcchHHHHhhc---CCceeEEEeCCHHHHHHHHHHHHH
Confidence 3455667899999888876655554543 357999999999988776555543
No 488
>PRK08324 short chain dehydrogenase; Validated
Probab=33.56 E-value=71 Score=33.48 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
+|..||=.| |.|+.+.+++..+. ...+|+.+|.++.+++.+.+.+... .++.++..|..+..
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEA 483 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHH
Confidence 467777554 46788887776543 3458999999998887776655433 35788888887644
No 489
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=33.31 E-value=2.2e+02 Score=25.07 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=29.7
Q ss_pred CEEEEEcCCCchH---HHHHHHHcCCCe---EEEEEe-CCHHHHHHHHHHHHHhCCC
Q 019802 243 WKVLDACSAPGNK---TVHLAALMKGKG---KIVACE-LNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 243 ~~VLD~cagpG~k---t~~la~~~~~~g---~i~a~D-~~~~rl~~~~~~~~~~g~~ 292 (335)
.+|+ ++||||+. +...|..+...| .|+..- ..+...+.++.+.+.++..
T Consensus 50 ~~v~-vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~ 105 (203)
T COG0062 50 RRVL-VLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIG 105 (203)
T ss_pred CEEE-EEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCC
Confidence 3455 77888764 445555444333 566543 4555677888888777763
No 490
>PRK07806 short chain dehydrogenase; Provisional
Probab=33.18 E-value=2.6e+02 Score=24.38 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNK-ERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (335)
Q Consensus 242 g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~-~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd 312 (335)
+.+||-.| |+|+.+.++++.+. ...+|++++.+. .+++.+...++..+. ++.++.+|..+...- ...|.
T Consensus 6 ~k~vlItG-asggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTG-SSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEEC-CCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 56777655 56788888887653 334788887754 456666555555553 577888898775421 11233
Q ss_pred eEEEEEEec
Q 019802 313 EVSLIFCIF 321 (335)
Q Consensus 313 ~V~~IllD~ 321 (335)
.++.++..+
T Consensus 84 ~~d~vi~~a 92 (248)
T PRK07806 84 GLDALVLNA 92 (248)
T ss_pred CCcEEEECC
Confidence 456666554
No 491
>PRK08114 cystathionine beta-lyase; Provisional
Probab=33.11 E-value=98 Score=30.22 Aligned_cols=87 Identities=7% Similarity=-0.055 Sum_probs=56.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEe-CCHHHHHHHHHHHHHhCCCcEEEEe-ccCCCCCCCCCCC-ceE
Q 019802 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE-LNKERVRRLKDTIKLSGAANIEVLH-GDFLNLDPKDPAY-SEV 314 (335)
Q Consensus 238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D-~~~~rl~~~~~~~~~~g~~ni~~~~-~D~~~~~~~~~~f-d~V 314 (335)
....|+..+-+.+|.+..+..+..+++++.+|++.+ ....-...+++.+++.|++ +.++. .|...+.. .+ ++.
T Consensus 73 ~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~-v~~vd~~d~~~l~~---~l~~~T 148 (395)
T PRK08114 73 ELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT-TTWFDPLIGADIAK---LIQPNT 148 (395)
T ss_pred HHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE-EEEECCCCHHHHHH---hcCCCc
Confidence 345677888899999888887777777666777654 5666677777888888873 44433 12111111 11 134
Q ss_pred EEEEEecccccccc
Q 019802 315 SLIFCIFTWMIIMF 328 (335)
Q Consensus 315 ~~IllD~~cs~~g~ 328 (335)
..|+++-|++.+|.
T Consensus 149 rlV~~EtpsNp~~~ 162 (395)
T PRK08114 149 KVVFLESPGSITME 162 (395)
T ss_pred eEEEEECCCCCCCE
Confidence 57888888877654
No 492
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=32.98 E-value=1.1e+02 Score=28.25 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.2
Q ss_pred EcCCCchHHHHHHHHcCCC---eEEEEEeCCHH---HHHHHHHHHHHhCC-------CcEEEEeccCCCC
Q 019802 248 ACSAPGNKTVHLAALMKGK---GKIVACELNKE---RVRRLKDTIKLSGA-------ANIEVLHGDFLNL 304 (335)
Q Consensus 248 ~cagpG~kt~~la~~~~~~---g~i~a~D~~~~---rl~~~~~~~~~~g~-------~ni~~~~~D~~~~ 304 (335)
+.-|+|+.+.++++.+-.. .+|+++..+.. ..+.+++.+...++ ..+.++.+|..+.
T Consensus 4 vtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 73 (367)
T TIGR01746 4 LTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEP 73 (367)
T ss_pred EeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcc
Confidence 5567899999999876433 47999987654 34455555555443 3588899998654
No 493
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=32.88 E-value=1.4e+02 Score=28.06 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=34.7
Q ss_pred HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
....++|++||=.|+|+ |..+.++|..++ ..+|+++|.++.|++.++ ++|.+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 34568899999887543 223345555542 225999999999988874 35763
No 494
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.85 E-value=1.9e+02 Score=25.80 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019802 241 PGWKVLDACSAPG-NKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (335)
Q Consensus 241 ~g~~VLD~cagpG-~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~f 311 (335)
.|..+|=.|++.| |.+..+++.+. ...+|+..+.++...+.+++..+..|. ..++..|..+...- ...|
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567777777765 67777776553 335788778774323334444343343 23567788775421 1235
Q ss_pred ceEEEEEEecc
Q 019802 312 SEVSLIFCIFT 322 (335)
Q Consensus 312 d~V~~IllD~~ 322 (335)
..+|.++..+.
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 55666665443
No 495
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=32.81 E-value=1.4e+02 Score=27.29 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=35.2
Q ss_pred HHcCCCCCCEEEEEcC--CCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 235 AALAPKPGWKVLDACS--APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 235 ~~l~~~~g~~VLD~ca--gpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
....+++|+.||=.|+ +-|..+.++|..++ .+|++++.++++.+.+++ +|.+
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~ 190 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFD 190 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCC
Confidence 3456788999986653 33444456666653 479999999998877654 5764
No 496
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=32.36 E-value=89 Score=31.68 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=47.1
Q ss_pred CCHHHHHHHHcccccccccCCCCCeEEeCCCCC-CC-CCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHH
Q 019802 179 MDVDSAVLELGKQFVVQKDDLVPDLLILPPGCD-LH-VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKT 256 (335)
Q Consensus 179 ~~~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt 256 (335)
++.|.+.+.|++..++..-|..+. +.+..+.- +. -+-+|..|+..+||.+ .-.+||..|-=+|...|||+
T Consensus 507 iDmEnmfdllkee~eVvd~P~a~p-l~~~~G~i~fsnvtF~Y~p~k~vl~dis-------F~v~pGktvAlVG~SGaGKS 578 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVVDLPGAPP-LKVTQGKIEFSNVTFAYDPGKPVLSDIS-------FTVQPGKTVALVGPSGAGKS 578 (790)
T ss_pred hhHHHHHHHhhcCchhhcCCCCCC-ccccCCeEEEEEeEEecCCCCceeecce-------EEecCCcEEEEECCCCCchh
Confidence 455666666665333322233222 23332211 11 1346788888998876 45689999999999999999
Q ss_pred HHHHHHc
Q 019802 257 VHLAALM 263 (335)
Q Consensus 257 ~~la~~~ 263 (335)
+.|--++
T Consensus 579 TimRlLf 585 (790)
T KOG0056|consen 579 TIMRLLF 585 (790)
T ss_pred HHHHHHH
Confidence 9776543
No 497
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=32.33 E-value=3.1e+02 Score=25.00 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=34.3
Q ss_pred HHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAA 292 (335)
Q Consensus 235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ 292 (335)
.....++|++||=.| .|+.+..++++... ..+|++++.++++.+.+++ +|..
T Consensus 149 ~~~~~~~g~~vlV~g--~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~ 201 (319)
T cd08242 149 EQVPITPGDKVAVLG--DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE 201 (319)
T ss_pred HhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc
Confidence 345567899988774 46666554433221 2469999999998887765 5764
No 498
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=32.17 E-value=1e+02 Score=27.23 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=36.8
Q ss_pred cCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802 249 CSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (335)
Q Consensus 249 cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~ 305 (335)
--|+|+.+.++++.+. .+.+|+.++.++.+++.+.+.+ +. ++.++.+|..+..
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dl~~~~ 59 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---GD-NLYIAQLDVRNRA 59 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cc-ceEEEEecCCCHH
Confidence 3567788888887653 3458999999988876665443 32 4777888887654
No 499
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=32.11 E-value=1.7e+02 Score=28.25 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcC------CCeEEEEEeC----CHHHHHHHHHHHH----HhCCC
Q 019802 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK------GKGKIVACEL----NKERVRRLKDTIK----LSGAA 292 (335)
Q Consensus 230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~------~~g~i~a~D~----~~~rl~~~~~~~~----~~g~~ 292 (335)
-|.+.+.+.-...-+|+|++-|.|.-...|.+.+. +.-+|++++. +...++...+++. .+|++
T Consensus 99 NqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~ 175 (374)
T PF03514_consen 99 NQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP 175 (374)
T ss_pred hHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc
Confidence 44555556555566899999999987776665442 3468999999 8888888877765 45663
No 500
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=32.04 E-value=1.6e+02 Score=27.10 Aligned_cols=53 Identities=26% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHcCCCCCCEEEEEcC--CCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802 235 AALAPKPGWKVLDACS--APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (335)
Q Consensus 235 ~~l~~~~g~~VLD~ca--gpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n 293 (335)
.....++|++||=.|+ |-|..+.+++..++ .+|++.+.++++.+.++ .+|.+.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~----~lGa~~ 186 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK----KLGFDV 186 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCCCE
Confidence 3456788999987764 24445556666643 47999999999877764 367643
Done!