RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019802
(335 letters)
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 96.7 bits (239), Expect = 1e-23
Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 19/170 (11%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 209
PR+VRVNTLK D V +Q D L+P+LL+ P
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 210 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 269
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 270 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC 319
A +L+ +R+ + + +G + E+ DFL + P DP Y EV I
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 71.6 bits (174), Expect = 1e-14
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 3/196 (1%)
Query: 137 AIQLALAQLLVRNKVKSI-EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVV 194
++L ++L + E + + + + P PR RVNTLK+ V V L K+ F
Sbjct: 9 LLRLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQF 68
Query: 195 QKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPG 253
++ + L + P + G +++Q +S AL PKPG V D +APG
Sbjct: 69 KRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPG 128
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
KT +LA LM+ G I A ++++ R+R + + G N+ + H L++ + + +
Sbjct: 129 GKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188
Query: 314 VSLIFCIFTWMIIMFH 329
+ L I +
Sbjct: 189 ILLDAPCTGSGTIHKN 204
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 59.7 bits (143), Expect = 8e-11
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 2/165 (1%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLH 213
E ++ + + P ++R+N DS + L + + PD + L +H
Sbjct: 15 EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 74
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + A +
Sbjct: 75 ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVD 133
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
++++R+ R+ D +K G + L+
Sbjct: 134 IDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 54.4 bits (130), Expect = 6e-09
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 60 QYMLRRPALEDYVVLMK-RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSK 118
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAA-----------NIEVLHGDFLNLDPKDPA 310
+ +G++++ E+ K+ K K + N++ +H D +
Sbjct: 119 AVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 178
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 52.4 bits (125), Expect = 1e-08
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 231 SMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
S +AA + + +VL +A G HLA ++ +G I A E + + +L +
Sbjct: 40 SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLE 98
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGF 331
++ NI L D +V LI+ +
Sbjct: 99 LVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILK 143
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 50.9 bits (121), Expect = 4e-08
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFH 329
+ NI + GD + +V +IF
Sbjct: 116 P--IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKI 159
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 47.4 bits (112), Expect = 6e-07
Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 181 VDSAVLELGKQFVVQKDDLVP----DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 236
V + LG V++ D + ++ +I + +S +
Sbjct: 22 VKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGR-VIRRNTQIISEIDASYIIMR 80
Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
+PG +L+ GN + ++ + GKG + E +++ +++ D +
Sbjct: 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 46.1 bits (109), Expect = 2e-06
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
K ++ + PG +VL+A + G T+ L + G++++ E + + +
Sbjct: 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142
Query: 288 LSGAA---NIEVLHGDFLNLDPKDPAY 311
N ++ D + + D +
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSV 169
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 41.3 bits (96), Expect = 4e-05
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG- 290
++ P +D G T+ L ++ A + N E + + ++ G
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLE---LAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 291 AANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM 327
N+ ++ GD K P + I+
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL 117
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 40.4 bits (94), Expect = 2e-04
Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLK 283
S V K G +D S GN V AAL G CE+ + LK
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQ-AALECGCALSFGCEIMDDASDLTILQYEELK 264
Query: 284 DTIKLSGAANIEV---LHGDFLNLDPKDPAYSEVSLIFC 319
KL G V L F++ + + +I
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILV 303
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 38.2 bits (88), Expect = 7e-04
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
S +AAA+ K K+L ++ G H+A + + A E +R L
Sbjct: 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELL 115
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM 327
D + NI + GD +V +I+
Sbjct: 116 D--ACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQA 157
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 36.4 bits (83), Expect = 0.004
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + + +D S G + +AA K E + + +
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK-HHYGVEKADIPAKYAETMDREFR 199
Query: 291 AA---------NIEVLHGDFLNLDPKDPAYSEVSLIFC 319
+ GDFL+ + ++ + S+IF
Sbjct: 200 KWMKWYGKKHAEYTLERGDFLSEEWRER-IANTSVIFV 236
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 36.1 bits (82), Expect = 0.005
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGA 291
+ L +VLD G ++ L + ++ K ++ + K
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAF 107
Query: 292 ANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHG 330
+ ++L LD PA + C+ +
Sbjct: 108 DKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDS 146
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 36.1 bits (83), Expect = 0.005
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
+V L VLDA SA G + + AL ++ +++++ +K + L+
Sbjct: 36 IVVVLLNILNPKIVLDALSATGIRGIR-FALETPAEEVWLNDISEDAYELMKRNVMLNFD 94
Query: 292 ANIEVLHGD 300
+ G
Sbjct: 95 GELRESKGR 103
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 35.0 bits (80), Expect = 0.007
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 14/106 (13%)
Query: 227 GKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
G VA A+ K V+DA + G LA++ ++ E N L D
Sbjct: 72 GGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDD 128
Query: 285 TIKLSGA---------ANIEVLHGDFLNLDPKDPAYSEVSLIFCIF 321
+ A ++++H L +V + +F
Sbjct: 129 GLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF 174
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 33.8 bits (76), Expect = 0.020
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 277
++ + +VLD + G+ + + + + + KE
Sbjct: 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFS---PYVQECIGVDATKE 49
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 32.0 bits (71), Expect = 0.077
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
+ + G +VL+ A G + V E++ + +
Sbjct: 10 FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD 58
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 31.5 bits (70), Expect = 0.11
Identities = 13/120 (10%), Positives = 30/120 (25%), Gaps = 20/120 (16%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-- 290
+ L K G +V + A +V E+++ ++ LS
Sbjct: 37 LDTFLKGKSGLRVFFPLCGKAVEMKWFA---DRGHSVVGVEISELGIQEFFTEQNLSYSE 93
Query: 291 ---------------AANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYVNQ 335
+ NI + +L + ++ + Y +
Sbjct: 94 EPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADT 153
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 31.1 bits (69), Expect = 0.16
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 267
+ L KPG ++LD S G A G
Sbjct: 24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITG 59
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 30.5 bits (67), Expect = 0.23
Identities = 9/98 (9%), Positives = 19/98 (19%), Gaps = 4/98 (4%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGK----GKIVACELNKERVRRLKDTIKLSG 290
++L PG +VL L+ A E
Sbjct: 14 SSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGD 73
Query: 291 AANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMF 328
+ D ++ + ++
Sbjct: 74 FKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIA 111
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 30.1 bits (67), Expect = 0.26
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
V L P+ +LD G + + G +I+ +++ E +R ++
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEE 65
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 29.6 bits (65), Expect = 0.45
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 277
+ A K +VLD + G+ A + K+VA +L ++
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTED 48
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 29.2 bits (64), Expect = 0.83
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPG---WK 244
PL+V+G +++ + A PG W+
Sbjct: 58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQ 89
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 28.5 bits (62), Expect = 0.97
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLKDTIKLS 289
PG VLD G+ A+ +G+ + + ++++ L+D +
Sbjct: 203 ALSHPGSTVLDFF--AGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDGLID 259
Query: 290 GAANIEV 296
A + E+
Sbjct: 260 KARSYEI 266
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 27.4 bits (60), Expect = 1.6
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
LA +PG +DA H +++ G+++ + + E V R K
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAG---HARGILERGGRVIGLDQDPEAVARAK 57
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 27.6 bits (60), Expect = 2.3
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLH 298
K G VLD G + G G+ ++ + + + + +
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 299 GDFLNLDPKDPAYSEVSLIFCIFTWM 324
D +V I F++
Sbjct: 81 QDSYGRHMDLGKEFDV--ISSQFSFH 104
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 126
Score = 26.5 bits (58), Expect = 2.4
Identities = 7/44 (15%), Positives = 9/44 (20%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
+L L L I CE+ V
Sbjct: 14 DEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTG 57
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.7 bits (58), Expect = 4.6
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 82 KHLSIIKQVLDSASILNSKWKRQE--ELVYI--LTYDILFGQ 119
K L+ I+ L+ K++ +L++I L +DI FG
Sbjct: 27 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGH 68
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 26.7 bits (58), Expect = 4.8
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 290 GAANI-EVLHGDFLNLDPKDPAYSE 313
G A+I EVL DFL +P++P++++
Sbjct: 31 GMADIAEVLWRDFLKHNPQNPSWAD 55
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 26.3 bits (57), Expect = 5.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 288 LSGAANIEVLHGDFLNLDPKDP 309
+ A VL+ + + +PK+P
Sbjct: 34 MGCAPMGHVLYDEVMRYNPKNP 55
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
subtilis [TaxId: 1423]}
Length = 392
Score = 25.9 bits (56), Expect = 7.8
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 126 DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQT 163
+K + + A++ A + R++ K+I D++ L++
Sbjct: 352 PFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKL 389
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 26.0 bits (56), Expect = 7.9
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 288 LSGAANIEVLHGDFLNLDPKDP 309
+ A VL + + + +DP
Sbjct: 31 MGMAPMSAVLWTEVMKYNSQDP 52
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
Ermc' [TaxId: 1423]}
Length = 235
Score = 25.6 bits (55), Expect = 9.6
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ + + + S G+ T+ L + + A E++ + + ++ KL
Sbjct: 13 IMTNIRLNEHDNIFEIGSGKGHFTLELV---QRCNFVTAIEIDHKLCKTTEN--KLVDHD 67
Query: 293 NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFY 332
N +VL+ D L ++ I+ +
Sbjct: 68 NFQVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVF 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,171,958
Number of extensions: 52922
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 35
Length of query: 335
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,226,816
Effective search space: 305477184
Effective search space used: 305477184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)