Query 019804
Match_columns 335
No_of_seqs 97 out of 103
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 99.9 1.5E-25 3.2E-30 184.2 13.8 107 111-221 2-113 (113)
2 TIGR02096 conserved hypothetic 99.2 1.6E-10 3.5E-15 91.9 12.6 111 116-228 3-122 (129)
3 cd00781 ketosteroid_isomerase 99.1 4.6E-10 9.9E-15 89.0 9.2 109 114-230 6-120 (122)
4 PF12680 SnoaL_2: SnoaL-like d 99.0 3.1E-09 6.6E-14 78.7 9.8 87 128-221 15-102 (102)
5 PF07366 SnoaL: SnoaL-like pol 99.0 1.3E-08 2.7E-13 81.9 13.1 98 127-227 17-119 (126)
6 PF07858 LEH: Limonene-1,2-epo 97.5 0.0017 3.6E-08 56.0 11.1 107 114-228 4-117 (125)
7 KOG4457 Uncharacterized conser 97.4 0.00028 6E-09 64.9 5.7 95 127-222 53-165 (202)
8 TIGR02960 SigX5 RNA polymerase 97.3 0.0045 9.7E-08 57.7 12.4 126 89-228 156-316 (324)
9 PRK08241 RNA polymerase factor 97.3 0.003 6.6E-08 59.6 11.3 127 89-227 167-325 (339)
10 COG4319 Ketosteroid isomerase 95.2 0.3 6.5E-06 43.4 10.7 97 111-213 10-116 (137)
11 cd00531 NTF2_like Nuclear tran 94.9 0.59 1.3E-05 34.9 10.5 106 114-226 2-124 (124)
12 TIGR02246 conserved hypothetic 94.6 0.48 1E-05 37.2 9.7 78 112-189 5-90 (128)
13 PF13474 SnoaL_3: SnoaL-like d 94.2 0.79 1.7E-05 35.4 9.9 78 114-191 2-86 (121)
14 PF14534 DUF4440: Domain of un 88.2 6.2 0.00013 29.4 8.8 90 115-211 3-98 (107)
15 COG5485 Predicted ester cyclas 86.9 2.2 4.9E-05 37.8 6.5 93 124-224 21-120 (131)
16 COG3631 Ketosteroid isomerase- 83.6 15 0.00033 31.9 10.1 114 110-230 3-126 (133)
17 PRK09636 RNA polymerase sigma 71.4 38 0.00082 31.8 9.7 74 89-163 129-235 (293)
18 PF13577 SnoaL_4: SnoaL-like d 61.6 75 0.0016 24.7 9.3 79 112-190 8-94 (127)
19 PF02136 NTF2: Nuclear transpo 59.0 61 0.0013 25.6 7.4 76 114-191 3-86 (118)
20 PF12158 DUF3592: Protein of u 44.3 21 0.00045 29.3 2.6 19 269-288 95-113 (148)
21 PRK14659 acpS 4'-phosphopantet 36.4 10 0.00022 31.9 -0.3 58 244-323 55-114 (122)
22 COG4308 LimA Limonene-1,2-epox 34.4 89 0.0019 28.0 5.1 106 108-228 11-120 (130)
23 KOG2546 Abl interactor ABI-1, 33.1 24 0.00051 37.1 1.5 82 129-216 91-177 (483)
24 PF13670 PepSY_2: Peptidase pr 30.5 1.8E+02 0.0038 22.6 5.7 39 168-221 44-82 (83)
25 TIGR03357 VI_zyme type VI secr 27.1 3.8E+02 0.0082 22.5 10.9 102 82-191 2-111 (133)
26 cd00780 NTF2 Nuclear transport 27.1 2.5E+02 0.0053 22.8 6.3 60 109-171 2-66 (119)
27 PF06764 DUF1223: Protein of u 26.6 50 0.0011 30.8 2.4 30 218-247 32-62 (202)
28 PF03284 PHZA_PHZB: Phenazine 26.6 5.3E+02 0.011 24.0 10.3 96 129-227 38-141 (162)
29 PF13547 GTA_TIM: GTA TIM-barr 25.6 54 0.0012 32.8 2.5 49 105-155 41-110 (299)
30 TIGR02115 potass_kdpF K+-trans 22.4 76 0.0017 21.3 2.0 15 297-311 6-20 (26)
31 PHA02516 W baseplate wedge sub 21.8 3.2E+02 0.0069 22.5 6.0 78 110-191 12-95 (103)
32 PF08698 Fcf2: Fcf2 pre-rRNA p 20.7 16 0.00035 30.6 -1.8 23 281-303 37-61 (99)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.93 E-value=1.5e-25 Score=184.15 Aligned_cols=107 Identities=25% Similarity=0.446 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHhCCccccccccceEeeCCcccccchHHHHhh----HHHHh-hcCCCeEEEEEEEEecCCEEEEEEE
Q 019804 111 STARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRR----LWATT-ALDNPSVTVQEMVMLSTSVLSIKWT 185 (335)
Q Consensus 111 ~t~rqlarDi~~~rtGnrt~sIYApDV~FKDPFn~FrGrErYkr~----~~M~~-~L~nPrf~V~eI~m~s~dti~irWr 185 (335)
++++.|.+|+...-+|+++++||++||+|+||+++|+|+++|+++ .++.. ++.+|+++|++|.+.++++|++|||
T Consensus 2 ~~~~~Lr~D~~~~f~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~ 81 (113)
T PF10184_consen 2 DVIRTLREDLPRFFTGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWR 81 (113)
T ss_pred hHHHHHHHHHHHHhcCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEE
Confidence 468899999999889999999999999999999999999999999 35556 6789999999999887779999999
Q ss_pred EeeecCccccccCCceEEEEEeEEEEeCCCCcEEEE
Q 019804 186 LRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEH 221 (335)
Q Consensus 186 L~g~~klpwas~gGrl~I~G~Sel~LN~isGrVvsH 221 (335)
++|.+++|| +|++.++|.|+|++|+ +|+|++|
T Consensus 82 ~~g~~~l~w---~p~~~~~G~S~~~ln~-~g~I~~H 113 (113)
T PF10184_consen 82 LRGVPRLPW---RPRISFDGTSTYTLNS-DGLIYRH 113 (113)
T ss_pred EEEEeCCCc---CCcEEEEEEEEEEECC-CCcEEeC
Confidence 999999999 5689999999999999 9999999
No 2
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.24 E-value=1.6e-10 Score=91.94 Aligned_cols=111 Identities=19% Similarity=0.295 Sum_probs=87.4
Q ss_pred HHHHHHHH-HhCC--ccccccccceEeeCCcc--cccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEEEeee
Q 019804 116 LVRDILEL-REGN--RALGTFAVSVKYKDPTR--SFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGK 189 (335)
Q Consensus 116 larDi~~~-rtGn--rt~sIYApDV~FKDPFn--~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWrL~g~ 189 (335)
+++.+.++ ..|+ .+.++|++|+.|.||.. ...|++.|++. ..++..+.+.+++++++...+++.+..+|+++++
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~ 82 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGT 82 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeee
Confidence 34444444 3444 58899999999999974 57889999998 7888999999999999775544599999999998
Q ss_pred cCcccc---ccCCceEEEEEeEEEEeCCCCcEEEEeeeccCC
Q 019804 190 PKSIIA---NIGGDLIVKVYSKFTLNQISGQVIEHEELWDLS 228 (335)
Q Consensus 190 ~klpwa---s~gGrl~I~G~Sel~LN~isGrVvsH~DyWD~S 228 (335)
.+-+|- +.+.++.++|.+.++|+ +|||++|++|||..
T Consensus 83 ~~g~~~g~~~~g~~~~~~~~~~~~~~--~gkI~~~~~y~D~~ 122 (129)
T TIGR02096 83 YRTAFLGLPASGKTYSIRGVTFFVFD--DGKIKRETTYYNLA 122 (129)
T ss_pred eccccCCCCCCCCEEEeeeeEEEEEe--CCEEEEEEEEecHH
Confidence 753221 12556779999999997 59999999999965
No 3
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.11 E-value=4.6e-10 Score=89.04 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=80.0
Q ss_pred HHHHHHHHHH-HhCC--ccccccccceEeeCCcc--cccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEEEe
Q 019804 114 RQLVRDILEL-REGN--RALGTFAVSVKYKDPTR--SFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLR 187 (335)
Q Consensus 114 rqlarDi~~~-rtGn--rt~sIYApDV~FKDPFn--~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWrL~ 187 (335)
+++++.+.++ -.|| ...++|++|+.|.||.. .++|++.+++. ..+.......++.+.... ..++.+-++|+++
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 84 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRA-SHGGEAAFAFRVE 84 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceee-ecCCEEEEEEEEE
Confidence 4445555544 3444 58899999999999965 49999999998 666555545554444422 3467777799887
Q ss_pred eecCccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccCCCC
Q 019804 188 GKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSAS 230 (335)
Q Consensus 188 g~~klpwas~gGrl~I~G~Sel~LN~isGrVvsH~DyWD~S~~ 230 (335)
.... ++.+.+.|.+.++||. +|||.++++|||....
T Consensus 85 ~~~~------g~~~~~~~~~v~~~~~-dGkI~~~~~y~d~~~~ 120 (122)
T cd00781 85 FEWE------GQPCVVRVIDVMRFDA-DGRIVSMRAYWGPVNL 120 (122)
T ss_pred EEeC------CceEEEEEEEEEEECC-CccChHHHHhcCcccc
Confidence 6533 5567799999999998 8999999999998653
No 4
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.02 E-value=3.1e-09 Score=78.69 Aligned_cols=87 Identities=18% Similarity=0.387 Sum_probs=75.5
Q ss_pred ccccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEEEeeecCccccccCCceEEEEE
Q 019804 128 RALGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVY 206 (335)
Q Consensus 128 rt~sIYApDV~FKDPFn~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWrL~g~~klpwas~gGrl~I~G~ 206 (335)
...++|+||+.|.||+...+|++.|.+. ..+...+.+.+++++++. .+++.+.++|+..++.+ +.+.++.++|.
T Consensus 15 ~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gd~v~~~~~~~~~~~----~~g~~~~~~~~ 89 (102)
T PF12680_consen 15 AIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIF-ADGDRVVVEWTVTGTTP----PTGQPISFRGC 89 (102)
T ss_dssp HHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEE-EETTEEEEEEEEEEEET----TTSCEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEE-EcCCEEEEEEEEEEEEc----CCCCEEEEEEE
Confidence 4789999999999998899999999998 777788999999999974 66899999999999633 21455779999
Q ss_pred eEEEEeCCCCcEEEE
Q 019804 207 SKFTLNQISGQVIEH 221 (335)
Q Consensus 207 Sel~LN~isGrVvsH 221 (335)
+.++| . +|||++|
T Consensus 90 ~~~~~-~-dgkI~~~ 102 (102)
T PF12680_consen 90 SVFRF-E-DGKIVEH 102 (102)
T ss_dssp EEEEE-E-TTEEEEE
T ss_pred EEEEE-E-CCEEEEC
Confidence 99999 5 6999998
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=98.99 E-value=1.3e-08 Score=81.90 Aligned_cols=98 Identities=20% Similarity=0.345 Sum_probs=85.1
Q ss_pred CccccccccceEeeCCc-ccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEEEeeecCcccccc--CC-ce
Q 019804 127 NRALGTFAVSVKYKDPT-RSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANI--GG-DL 201 (335)
Q Consensus 127 nrt~sIYApDV~FKDPF-n~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWrL~g~~klpwas~--gG-rl 201 (335)
+....+|+||+.+.+|. ..-.|++.|+.. .-+...+.|.++.|.++. .+++.+.++|+++|+..-+|.++ .| ++
T Consensus 17 ~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~-~~gd~v~~~~~~~Gth~g~~~g~~ptgk~v 95 (126)
T PF07366_consen 17 DALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVV-AEGDRVAVRWTFTGTHTGEFMGIPPTGKPV 95 (126)
T ss_dssp CHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEE-EETTEEEEEEEEEEEESSEBTTBE-TTEEE
T ss_pred HHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE-EECCEEEEEEEEEEeecCCcCCcCCCCCEE
Confidence 36889999999999997 799999999999 788899999999999976 55899999999999987655221 23 46
Q ss_pred EEEEEeEEEEeCCCCcEEEEeeeccC
Q 019804 202 IVKVYSKFTLNQISGQVIEHEELWDL 227 (335)
Q Consensus 202 ~I~G~Sel~LN~isGrVvsH~DyWD~ 227 (335)
.+.|++.++++. |||+++..+||.
T Consensus 96 ~~~~~~~~~~~~--gkI~e~~~~~D~ 119 (126)
T PF07366_consen 96 EFRGMSIFRFED--GKIVEEWVYFDE 119 (126)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEECH
T ss_pred EEEEEEEEEEEC--CEEEEEEEEECH
Confidence 699999999998 999999999995
No 6
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.48 E-value=0.0017 Score=56.02 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=71.8
Q ss_pred HHHHHHHHHHH-hCC---ccccccccc-eEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEEEe
Q 019804 114 RQLVRDILELR-EGN---RALGTFAVS-VKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLR 187 (335)
Q Consensus 114 rqlarDi~~~r-tGn---rt~sIYApD-V~FKDPFn~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWrL~ 187 (335)
.+++++.+++- .++ ....++++| ||..-|+-..+|+++.++. .-|...+....+.|+.|... + .+.+.+|.-
T Consensus 4 ~~vV~~F~~a~~~~D~~~a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaad-g-~~VltER~D 81 (125)
T PF07858_consen 4 EEVVRAFLAALEDRDVDAALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAAD-G-DVVLTERTD 81 (125)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEE-T-TEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeec-C-CEEEEEeEe
Confidence 45666776663 333 345688999 9999999999999999998 66667777888999997753 4 445666665
Q ss_pred eecCccccccCCc-eEEEEEeEEEEeCCCCcEEEEeeeccCC
Q 019804 188 GKPKSIIANIGGD-LIVKVYSKFTLNQISGQVIEHEELWDLS 228 (335)
Q Consensus 188 g~~klpwas~gGr-l~I~G~Sel~LN~isGrVvsH~DyWD~S 228 (335)
-... +.||. +.+..+-.+++. +|||+..+||||..
T Consensus 82 ~l~~----~dG~~~~~~~V~GvfEv~--dGkI~~WRDYFD~~ 117 (125)
T PF07858_consen 82 VLRF----ADGPLRIQFPVCGVFEVR--DGKITLWRDYFDLA 117 (125)
T ss_dssp EEEE----TTTTEEEEEEEEEEEEEE--TTEEEEEEEE--HH
T ss_pred eeee----ecCCeEEEEEEEEEEEEE--CCEEEEEeccCCHH
Confidence 4322 00222 334444444554 59999999999964
No 7
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00028 Score=64.90 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=66.0
Q ss_pred CccccccccceEeeCCcccc--cchHHHHhhHHHHhhcC-----CCeEEEEEEEEe-cCCEEEEEEEEeeecC--ccccc
Q 019804 127 NRALGTFAVSVKYKDPTRSF--TGREKYKRRLWATTALD-----NPSVTVQEMVML-STSVLSIKWTLRGKPK--SIIAN 196 (335)
Q Consensus 127 nrt~sIYApDV~FKDPFn~F--rGrErYkr~~~M~~~L~-----nPrf~V~eI~m~-s~dti~irWrL~g~~k--lpwas 196 (335)
...+++|.+||.|.|-.... +|++-|...--|.+++. ..+|+|..+..- ++-++.+|||+.|.+- ..|+.
T Consensus 53 ~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~~Tvr~RWRv~gvsv~~~f~~~ 132 (202)
T KOG4457|consen 53 RMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDEGTVRCRWRVKGVSVTRIFMNP 132 (202)
T ss_pred cccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCCceEEEEEEEecceEeeeeech
Confidence 34799999999999987665 57777776644555554 455555554322 4688999999998432 33422
Q ss_pred cC----Cc---eE-EEEEeEEEEeCCCCcEEEEe
Q 019804 197 IG----GD---LI-VKVYSKFTLNQISGQVIEHE 222 (335)
Q Consensus 197 ~g----Gr---l~-I~G~Sel~LN~isGrVvsH~ 222 (335)
-. -+ +. .+|-|.+.+|. +|+|+.|+
T Consensus 133 ~l~~~de~~~~~swyDgYSv~yl~~-~GlI~kh~ 165 (202)
T KOG4457|consen 133 RLLRFDERMQNLSWYDGYSVLYLDG-NGLIYKHT 165 (202)
T ss_pred HHhhHHHHhcccccccceeEEEECC-CceEEeee
Confidence 11 01 11 78999999999 99999997
No 8
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.29 E-value=0.0045 Score=57.71 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=86.0
Q ss_pred hcCCCccccCCceeeecchhHHHH---------------------------HHHHHHHHHHH-HhCC--ccccccccceE
Q 019804 89 VDGMDFGELCNEFECISSPLVEST---------------------------ARQLVRDILEL-REGN--RALGTFAVSVK 138 (335)
Q Consensus 89 vdg~~f~e~CdeF~C~SSp~VE~t---------------------------~rqlarDi~~~-rtGn--rt~sIYApDV~ 138 (335)
++||+..|++...- +|-..|.+. -+++++.+.++ .+|| .+.++++|||.
T Consensus 156 ~~g~s~~EIA~~lg-is~~tV~~~l~Rar~~Lr~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~ 234 (324)
T TIGR02960 156 VLGWRAAETAELLG-TSTASVNSALQRARATLDEVGPSARDDQLAQPPSPEEQDLLERYIAAFESYDLDALTALLHEDAI 234 (324)
T ss_pred HhCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHhcCCeE
Confidence 78999888876543 232333332 23344444444 5677 48899999999
Q ss_pred eeCCc--ccccchHHHHhh-HHH--HhhcCCCeEEEEEEEEecCCEEEEEEEEeeecCccccccCCceEEEEEeEEEEeC
Q 019804 139 YKDPT--RSFTGREKYKRR-LWA--TTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQ 213 (335)
Q Consensus 139 FKDPF--n~FrGrErYkr~-~~M--~~~L~nPrf~V~eI~m~s~dti~irWrL~g~~klpwas~gGrl~I~G~Sel~LN~ 213 (335)
|.+|. ..++|++++.+. .-+ ...+ +.+.+.... .+++.+.+.|..... ++.+.+.|...++| .
T Consensus 235 ~~~p~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~-~~g~~~~v~~~~~~~--------~~~~~~~~v~~~~~-~ 302 (324)
T TIGR02960 235 WEMPPYTLWYQGRPAIVGFIHTVCPGEGA--AGMRLLPTI-ANGQPAAAMYMRRPD--------AERHTAFQLHVLEI-R 302 (324)
T ss_pred EEcCCCCcceeCHHHHHHHHHHhcccccC--CceeEEEee-ecCCceEEEEEEcCC--------CCeeeeeEEEEEEE-c
Confidence 99997 449999998876 434 2233 455555433 668888888742221 44577899999999 5
Q ss_pred CCCcEEEEeeeccCC
Q 019804 214 ISGQVIEHEELWDLS 228 (335)
Q Consensus 214 isGrVvsH~DyWD~S 228 (335)
+|||++...|||-.
T Consensus 303 -dGkI~~~~~~~~~~ 316 (324)
T TIGR02960 303 -GGRITHVTAFLDGP 316 (324)
T ss_pred -CCcEEEEEEEcCCH
Confidence 89999999999965
No 9
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.27 E-value=0.003 Score=59.58 Aligned_cols=127 Identities=11% Similarity=0.121 Sum_probs=85.5
Q ss_pred hcCCCccccCCceeeecchhHH--------------------------HHHHHHHHHHHHH-HhCC--ccccccccceEe
Q 019804 89 VDGMDFGELCNEFECISSPLVE--------------------------STARQLVRDILEL-REGN--RALGTFAVSVKY 139 (335)
Q Consensus 89 vdg~~f~e~CdeF~C~SSp~VE--------------------------~t~rqlarDi~~~-rtGn--rt~sIYApDV~F 139 (335)
++||+..|++...-+.- ..|. ...+++++.+.++ ..|| ...+++++||.+
T Consensus 167 ~~g~s~~EIA~~lgis~-~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~ 245 (339)
T PRK08241 167 VLGWSAAEVAELLDTSV-AAVNSALQRARATLAERGPSAADTLREPDDPEERALLARYVAAFEAYDVDALVALLTEDATW 245 (339)
T ss_pred hhCCCHHHHHHHhCCCH-HHHHHHHHHHHHHHhhcCCCcccccCCCCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEE
Confidence 79999999887664421 1221 2334455555555 5666 488999999999
Q ss_pred eCCccc--ccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEEEeeecCccccccCCceEEEEEeEEEEeCCCC
Q 019804 140 KDPTRS--FTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISG 216 (335)
Q Consensus 140 KDPFn~--FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWrL~g~~klpwas~gGrl~I~G~Sel~LN~isG 216 (335)
.+|-.. ++|++++... ..+......+.+.+..+. .+++.+.+.+. . + ..++.+.+.|..-+++. +|
T Consensus 246 ~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~---~-~----~~g~~~~~~~v~v~~v~--dG 314 (339)
T PRK08241 246 SMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTR-ANGQPAFAQYM---R-D----PDGGGHRPWALHVLELR--GG 314 (339)
T ss_pred EcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEee-cCCCeEEEEEE---E-c----CCCCeeecceEEEEEEe--CC
Confidence 999876 9999998877 444333333455665543 45666666542 1 1 11444668899999997 49
Q ss_pred cEEEEeeeccC
Q 019804 217 QVIEHEELWDL 227 (335)
Q Consensus 217 rVvsH~DyWD~ 227 (335)
||++-.+|||.
T Consensus 315 kI~~~~~y~d~ 325 (339)
T PRK08241 315 RIAHVTSFLDT 325 (339)
T ss_pred EEEEEEEEcCh
Confidence 99999999997
No 10
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=95.15 E-value=0.3 Score=43.38 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHH-HhCC--ccccccccceEeeCCc-ccccchHHHHhh--HHHHhhcCCCeEEEEEEEE-ecCCEEEE-
Q 019804 111 STARQLVRDILEL-REGN--RALGTFAVSVKYKDPT-RSFTGREKYKRR--LWATTALDNPSVTVQEMVM-LSTSVLSI- 182 (335)
Q Consensus 111 ~t~rqlarDi~~~-rtGn--rt~sIYApDV~FKDPF-n~FrGrErYkr~--~~M~~~L~nPrf~V~eI~m-~s~dti~i- 182 (335)
..+|.+..|-.++ |.++ ...+.|++|+.|=||. -.+.|++.|+++ .++..+-..++|++.|++- .++++++.
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~~ 89 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFVT 89 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEEE
Confidence 5666666665444 4444 5788899999999996 899999999999 5666777899999999662 35777655
Q ss_pred -EEEEeeecCccccccCCceE-EEEEeEEEEeC
Q 019804 183 -KWTLRGKPKSIIANIGGDLI-VKVYSKFTLNQ 213 (335)
Q Consensus 183 -rWrL~g~~klpwas~gGrl~-I~G~Sel~LN~ 213 (335)
.|.+.++-+ +|+.. ..|.-++.|-.
T Consensus 90 ~~~~~~~~~~------dg~~~~~~~Rat~v~rK 116 (137)
T COG4319 90 ALLLLTGTKK------DGPPADLAGRATYVFRK 116 (137)
T ss_pred EeeeeeccCC------CCcchhheeeeEEEEEE
Confidence 577777633 44433 56666666653
No 11
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=94.95 E-value=0.59 Score=34.90 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHh-CC--ccccccccceEeeCCc-----ccccchHHHHhh-HHHHhh-cCCCeE-EEEEEEEecC---CE
Q 019804 114 RQLVRDILELRE-GN--RALGTFAVSVKYKDPT-----RSFTGREKYKRR-LWATTA-LDNPSV-TVQEMVMLST---SV 179 (335)
Q Consensus 114 rqlarDi~~~rt-Gn--rt~sIYApDV~FKDPF-----n~FrGrErYkr~-~~M~~~-L~nPrf-~V~eI~m~s~---dt 179 (335)
++|...+.++.. ++ .+..+|++|++|..|. ..+.|+++++.. ..+... ...-.+ .-..+...++ ..
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 456666666643 33 4889999999999998 688999988887 433221 111111 1122222222 45
Q ss_pred EEEEEEEeeecCccccccCCceEEEEEeEEEE---eCCCCcEEEEeeecc
Q 019804 180 LSIKWTLRGKPKSIIANIGGDLIVKVYSKFTL---NQISGQVIEHEELWD 226 (335)
Q Consensus 180 i~irWrL~g~~klpwas~gGrl~I~G~Sel~L---N~isGrVvsH~DyWD 226 (335)
+...|.+.+..+ +....+.|.-..++ |. .++|.+.+.+|+
T Consensus 82 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g-~w~i~~~~~~~~ 124 (124)
T cd00531 82 VSVFGVLRTRGD------GEQDVFAGGQTFVLRPQGG-GGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEEccC------CceeEEEEEEEEEEEEeCC-EEEEEEEEEecC
Confidence 667788877643 11223334333333 34 789999988886
No 12
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=94.59 E-value=0.48 Score=37.23 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHH-HhCC--ccccccccceEee-CCcccccchHHHHhh-HHHHhhcCC---CeEEEEEEEEecCCEEEEE
Q 019804 112 TARQLVRDILEL-REGN--RALGTFAVSVKYK-DPTRSFTGREKYKRR-LWATTALDN---PSVTVQEMVMLSTSVLSIK 183 (335)
Q Consensus 112 t~rqlarDi~~~-rtGn--rt~sIYApDV~FK-DPFn~FrGrErYkr~-~~M~~~L~n---Prf~V~eI~m~s~dti~ir 183 (335)
-+++|.+.+.++ ..|| ...++|++|+.|. -|...++|++.+.+. .-....... -++++.++.-.+++.+...
T Consensus 5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~ 84 (128)
T TIGR02246 5 AIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVH 84 (128)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEE
Confidence 355666666666 4555 5899999999998 445578999999987 433333333 2444455554455666655
Q ss_pred EEEeee
Q 019804 184 WTLRGK 189 (335)
Q Consensus 184 WrL~g~ 189 (335)
+.....
T Consensus 85 ~~~~~~ 90 (128)
T TIGR02246 85 AIQTIT 90 (128)
T ss_pred EEEEEE
Confidence 444443
No 13
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=94.17 E-value=0.79 Score=35.43 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHHH-HhCC--ccccccccceEeeCCc--ccccchHHHHhh-HHHHhhcCCCeEEEEEEEE-ecCCEEEEEEEE
Q 019804 114 RQLVRDILEL-REGN--RALGTFAVSVKYKDPT--RSFTGREKYKRR-LWATTALDNPSVTVQEMVM-LSTSVLSIKWTL 186 (335)
Q Consensus 114 rqlarDi~~~-rtGn--rt~sIYApDV~FKDPF--n~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m-~s~dti~irWrL 186 (335)
+++.+++.++ ..|| .+.++|++|+.+-+|. ..++|++.+++. ...+..+...+++..++.. .+++.+.+.+.+
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~~~~ 81 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVVTGEF 81 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEEEEEE
Confidence 4455555554 5666 7999999999998754 567899999998 5444555666666666432 257888888877
Q ss_pred eeecC
Q 019804 187 RGKPK 191 (335)
Q Consensus 187 ~g~~k 191 (335)
+...+
T Consensus 82 ~~~~~ 86 (121)
T PF13474_consen 82 RLRFR 86 (121)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76543
No 14
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=88.16 E-value=6.2 Score=29.43 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=52.4
Q ss_pred HHHHHHHHH-HhCC--ccccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCE--EEEEEEEee
Q 019804 115 QLVRDILEL-REGN--RALGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSV--LSIKWTLRG 188 (335)
Q Consensus 115 qlarDi~~~-rtGn--rt~sIYApDV~FKDPFn~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dt--i~irWrL~g 188 (335)
++.+.+.++ ..+| ...++|+||+.|-.|.-...|++.+.+. .-.......-+++..++... ++. +..+|++.+
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~~~~~~ 81 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGRWTFTW 81 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEEEEEEE
Confidence 344444444 3444 5889999999999999988899988776 32111123334444444444 555 445566655
Q ss_pred ecCccccccCCceEEEEEeEEEE
Q 019804 189 KPKSIIANIGGDLIVKVYSKFTL 211 (335)
Q Consensus 189 ~~klpwas~gGrl~I~G~Sel~L 211 (335)
... ++.+.++|.....+
T Consensus 82 ~~~------g~~~~~~~~~~~v~ 98 (107)
T PF14534_consen 82 RGD------GEPVTIRGRFTSVW 98 (107)
T ss_dssp TTT------TEEEEEEEEEEEEE
T ss_pred ecC------CceEEEEEEEEEEE
Confidence 422 33344666555544
No 15
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=86.94 E-value=2.2 Score=37.81 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=62.6
Q ss_pred HhCCccccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEEEeeecC-----cccccc
Q 019804 124 REGNRALGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPK-----SIIANI 197 (335)
Q Consensus 124 rtGnrt~sIYApDV~FKDPFn~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWrL~g~~k-----lpwas~ 197 (335)
+.+-.-.+-+-+|+.+-.. .-.|++.|..| .-++..+.|-+|+++.+..+ ++.+-.|=+|.++++ +|-+
T Consensus 21 ~q~~~~l~~fv~~~v~~ng--~~~glsgyr~ml~~df~aiPdl~f~ie~lvae-~~~vaarl~Fdctp~G~i~Gip~n-- 95 (131)
T COG5485 21 RQAWDELGSFVDGNVMHNG--RLQGLSGYREMLVRDFSAIPDLSFEIERLVAE-GDRVAARLTFDCTPSGEIMGIPPN-- 95 (131)
T ss_pred hhhhhhcccCCcCeeeeCC--ceechHHHHHHHHhhHhhCCCcceEEEEEeec-CCceEEEEEEccCcCceEeccCCC--
Confidence 3444444455555555432 45799999999 78999999999999998855 889999999999877 2211
Q ss_pred CCceEEEEEeEEEEe-CCCCcEEEEeee
Q 019804 198 GGDLIVKVYSKFTLN-QISGQVIEHEEL 224 (335)
Q Consensus 198 gGrl~I~G~Sel~LN-~isGrVvsH~Dy 224 (335)
|-++.. |+..|. =++|||++|.-.
T Consensus 96 GkrV~F---se~vfy~f~~~KI~~vwsv 120 (131)
T COG5485 96 GKRVRF---SENVFYEFENGKIVEVWSV 120 (131)
T ss_pred CcEEEe---ehhhhhhhcCCeEEeeehh
Confidence 111221 333333 247999987533
No 16
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=83.64 E-value=15 Score=31.94 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHH-HhCC--ccccccccceEeeCC-----cccccc-hHHHHhh-HHHHhhcCCCeEEEEEEEEecCCE
Q 019804 110 ESTARQLVRDILEL-REGN--RALGTFAVSVKYKDP-----TRSFTG-REKYKRR-LWATTALDNPSVTVQEMVMLSTSV 179 (335)
Q Consensus 110 E~t~rqlarDi~~~-rtGn--rt~sIYApDV~FKDP-----Fn~FrG-rErYkr~-~~M~~~L~nPrf~V~eI~m~s~dt 179 (335)
|.-.++++++..++ -.|+ .+.+++++|+.|.=| .-.++| .+..+.. .-..+.+...++++..+....+..
T Consensus 3 ~~~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD~~ 82 (133)
T COG3631 3 EMDNTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGDPV 82 (133)
T ss_pred cchhhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcCCce
Confidence 34456788887777 3455 489999999999744 344554 3333333 223344568888888877666666
Q ss_pred EEEEEEEeeecCccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccCCCC
Q 019804 180 LSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSAS 230 (335)
Q Consensus 180 i~irWrL~g~~klpwas~gGrl~I~G~Sel~LN~isGrVvsH~DyWD~S~~ 230 (335)
+-+-|+-....+ . |..+.=.-..-+++- +|||++=+||||.-..
T Consensus 83 ~~v~~~~~~~~~----~-G~~~~~~~~~v~~vr--dGrI~~~~~y~D~~~~ 126 (133)
T COG3631 83 GAVFRTRGRVSR----T-GKPYENRYAFVIRVR--DGRITRYREYVDTLAL 126 (133)
T ss_pred EEEEEecCcccc----c-CceeecceEEEEEEe--CCEEEEEEEEechHhH
Confidence 767777754433 1 333332223334443 6999999999997543
No 17
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=71.39 E-value=38 Score=31.83 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=49.5
Q ss_pred hcCCCccccCCceeeecchhHHHHH---------------------HHHHHHHHHH-HhCC--ccccccccceEee-CC-
Q 019804 89 VDGMDFGELCNEFECISSPLVESTA---------------------RQLVRDILEL-REGN--RALGTFAVSVKYK-DP- 142 (335)
Q Consensus 89 vdg~~f~e~CdeF~C~SSp~VE~t~---------------------rqlarDi~~~-rtGn--rt~sIYApDV~FK-DP- 142 (335)
++||++.|++...-|. -.+|.+.+ +.+++...++ ..|| .+.+++++||.|. |+
T Consensus 129 ~~g~s~~EIA~~lg~s-~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dgg 207 (293)
T PRK09636 129 VFGVPFDEIASTLGRS-PAACRQLASRARKHVRAARPRFPVSDEEGAELVEAFFAALASGDLDALVALLAPDVVLHADGG 207 (293)
T ss_pred HhCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCC
Confidence 7999999999887653 33443332 1223333333 5777 6999999999998 65
Q ss_pred ------cccccchHHHHhh-HHHHhhcC
Q 019804 143 ------TRSFTGREKYKRR-LWATTALD 163 (335)
Q Consensus 143 ------Fn~FrGrErYkr~-~~M~~~L~ 163 (335)
..-+.|+++..+. ..+...+.
T Consensus 208 g~~~~~~~~~~G~~~v~~~l~~~~~~~~ 235 (293)
T PRK09636 208 GKVPTALRPIYGADKVARFFLGLARRYG 235 (293)
T ss_pred CccCCCCccccCHHHHHHHHHHHhhhcc
Confidence 3457899998887 55555443
No 18
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=61.61 E-value=75 Score=24.74 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHH-hC--CccccccccceEeeCCc---ccccchHHHHhh-HHHHhh-cCCCeEEEEEEEEecCCEEEEE
Q 019804 112 TARQLVRDILELR-EG--NRALGTFAVSVKYKDPT---RSFTGREKYKRR-LWATTA-LDNPSVTVQEMVMLSTSVLSIK 183 (335)
Q Consensus 112 t~rqlarDi~~~r-tG--nrt~sIYApDV~FKDPF---n~FrGrErYkr~-~~M~~~-L~nPrf~V~eI~m~s~dti~ir 183 (335)
-++++...+..+. ++ +...++|++|+.|.=|- ..++|++.+.++ .-.... .....+...-....+++++..+
T Consensus 8 ~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~~ 87 (127)
T PF13577_consen 8 AIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATVR 87 (127)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEEE
Confidence 3444555555553 22 35899999999998774 589999999998 322221 1111111111111357899999
Q ss_pred EEEeeec
Q 019804 184 WTLRGKP 190 (335)
Q Consensus 184 WrL~g~~ 190 (335)
|.+....
T Consensus 88 ~~~~~~~ 94 (127)
T PF13577_consen 88 SYVLATH 94 (127)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998764
No 19
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=59.01 E-value=61 Score=25.59 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhC-Cc--cccccccceEeeCCccc--ccchHHHHhh-HHHHhhcCCCeEEEEEEEEe--cCCEEEEEEE
Q 019804 114 RQLVRDILELREG-NR--ALGTFAVSVKYKDPTRS--FTGREKYKRR-LWATTALDNPSVTVQEMVML--STSVLSIKWT 185 (335)
Q Consensus 114 rqlarDi~~~rtG-nr--t~sIYApDV~FKDPFn~--FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~--s~dti~irWr 185 (335)
++.++.+-..-.+ ++ +..+|++|.-+-++.-+ ++|++.+.+. ..+-... .++.|..+... ......+-+.
T Consensus 3 ~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d~qp~~~~~~~i~i~ 80 (118)
T PF02136_consen 3 NSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVDCQPSPSSDGSILIT 80 (118)
T ss_dssp HHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEEEEEEEECCSEEEEE
T ss_pred HHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccccccccccCCcEEEE
Confidence 4444444444322 33 88999888888888777 9999999887 3222221 26777765544 1233445555
Q ss_pred EeeecC
Q 019804 186 LRGKPK 191 (335)
Q Consensus 186 L~g~~k 191 (335)
..|..+
T Consensus 81 v~G~~~ 86 (118)
T PF02136_consen 81 VTGQFK 86 (118)
T ss_dssp EEEEEE
T ss_pred EEeEEE
Confidence 666554
No 20
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=44.30 E-value=21 Score=29.31 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=16.5
Q ss_pred ccccccccCCCCCCcccccC
Q 019804 269 QENLGIYPDPSGDPTKVSSD 288 (335)
Q Consensus 269 ~e~~~iy~dP~~DP~kFfq~ 288 (335)
++..++|.||+ ||.+.+=.
T Consensus 95 G~~V~V~Y~P~-~P~~~~l~ 113 (148)
T PF12158_consen 95 GDTVTVYYNPN-NPEEARLE 113 (148)
T ss_pred cCEEEEEECCc-CCCeEEEe
Confidence 46789999999 99998766
No 21
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=36.44 E-value=10 Score=31.87 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=36.2
Q ss_pred HHHhhhhccchHHHHHhhhhccccc--ccccccccCCCCCCcccccCCCCcccchhHHHHHHHHHHHHHHHHhhcccchh
Q 019804 244 LYATTEAGKDSFDLINNLKSKISTE--QENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHY 321 (335)
Q Consensus 244 ~~a~~e~~kd~~d~~~~~~~~l~~~--~e~~~iy~dP~~DP~kFfq~~d~~~~D~~~~~~vi~l~~~~v~~l~~~~~~~~ 321 (335)
-|+++||.- |-+...++.+ =.+.+|+.||+|-|.-.+...-. + --+.++|+|...|
T Consensus 55 rwaaKEA~~------KAlg~g~~~~~~~~di~i~~~~~g~P~v~l~~~~~---~-------------~~i~vSiSh~~~y 112 (122)
T PRK14659 55 RFAAKEAYV------KALGTGFGRGIKMKDISVYNDLYGKPQITVSKSNI---D-------------HKIELSLSDDGDY 112 (122)
T ss_pred HHHHHHHHH------HHhccCcCcCccccEEEEEECCCCCeEEEECCccc---c-------------cEEEEEEEcCCCc
Confidence 388888753 2222223322 24568999999999877765421 1 2346888998887
Q ss_pred HH
Q 019804 322 EL 323 (335)
Q Consensus 322 ~~ 323 (335)
=+
T Consensus 113 a~ 114 (122)
T PRK14659 113 AI 114 (122)
T ss_pred EE
Confidence 43
No 22
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.37 E-value=89 Score=27.96 Aligned_cols=106 Identities=10% Similarity=0.036 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCccccccccceEee-CCcccccchHHHHhh-H-HHHhhcCCCeEEEEEEEEecCCEEEEEE
Q 019804 108 LVESTARQLVRDILELREGNRALGTFAVSVKYK-DPTRSFTGREKYKRR-L-WATTALDNPSVTVQEMVMLSTSVLSIKW 184 (335)
Q Consensus 108 ~VE~t~rqlarDi~~~rtGnrt~sIYApDV~FK-DPFn~FrGrErYkr~-~-~M~~~L~nPrf~V~eI~m~s~dti~irW 184 (335)
.||.-+.-+.+|=. .+....++.+|-+|. -|+-..+|+++-..+ . .|..-+ .-.|.|+.|... +..+..+
T Consensus 11 ~V~aF~aA~~~~d~----~~avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~~~-~~ef~I~riAad-g~~VltE- 83 (130)
T COG4308 11 TVEAFLAALQEDDG----DAAVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAGIL-GFEFKILRIAAD-GGAVLTE- 83 (130)
T ss_pred HHHHHHHHHHhcCc----cHHHHHhcCCCeeeccCCcccccchhhhhhhhccccCCcc-eeEEEEEEEecc-cceehhh-
Confidence 56666666665532 223445565555554 468899999998888 3 343333 356888886633 4433322
Q ss_pred EEeeecC-ccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccCC
Q 019804 185 TLRGKPK-SIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLS 228 (335)
Q Consensus 185 rL~g~~k-lpwas~gGrl~I~G~Sel~LN~isGrVvsH~DyWD~S 228 (335)
|+....- +-| .++.|-|.=|+ .+|||+..+||.|+-
T Consensus 84 R~D~~~~g~~~----~~~~V~GvfEV----~~~rI~~WRDYFDv~ 120 (130)
T COG4308 84 RLDARIDGPLW----VQFWVCGVFEV----EDGRIVLWRDYFDVN 120 (130)
T ss_pred hhhhhccCCcE----EEEEEEEEEEE----eCCEEEeehhhhhHH
Confidence 3332211 112 13335555554 479999999999974
No 23
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=33.06 E-value=24 Score=37.13 Aligned_cols=82 Identities=12% Similarity=0.009 Sum_probs=61.5
Q ss_pred cccccccceEeeCCcccccchHHHHhhHHHHh-----hcCCCeEEEEEEEEecCCEEEEEEEEeeecCccccccCCceEE
Q 019804 129 ALGTFAVSVKYKDPTRSFTGREKYKRRLWATT-----ALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIV 203 (335)
Q Consensus 129 t~sIYApDV~FKDPFn~FrGrErYkr~~~M~~-----~L~nPrf~V~eI~m~s~dti~irWrL~g~~klpwas~gGrl~I 203 (335)
-..+|+-+|-|+++-+.++|+.-|+.+.-..+ +..|+-..|.-+++- -+...++|.-+|. +.+|.. .| .-
T Consensus 91 ~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkP-id~~mLd~igHGI-r~~~~~-rg--~~ 165 (483)
T KOG2546|consen 91 QVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKP-IDYSMLDDIGHGI-RGSWET-RG--RF 165 (483)
T ss_pred hhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceecc-ccceeeecccccc-cccccc-cc--Cc
Confidence 45789999999999999999999998832222 245666777776644 6789999999997 767754 33 25
Q ss_pred EEEeEEEEeCCCC
Q 019804 204 KVYSKFTLNQISG 216 (335)
Q Consensus 204 ~G~Sel~LN~isG 216 (335)
.|+++..|+- +|
T Consensus 166 ~g~~t~~l~r-s~ 177 (483)
T KOG2546|consen 166 DGTSTGKLSR-SG 177 (483)
T ss_pred CcccccccCC-CC
Confidence 6788888887 65
No 24
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=30.49 E-value=1.8e+02 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=28.6
Q ss_pred EEEEEEEecCCEEEEEEEEeeecCccccccCCceEEEEEeEEEEeCCCCcEEEE
Q 019804 168 TVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEH 221 (335)
Q Consensus 168 ~V~eI~m~s~dti~irWrL~g~~klpwas~gGrl~I~G~Sel~LN~isGrVvsH 221 (335)
.|+++...++.. |++....+ .|+ .-++.+|+.+|.|+..
T Consensus 44 ~v~~ve~~~~g~----yev~~~~~------dG~-----~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 44 QVREVEFDDDGC----YEVEARDK------DGK-----KVEVYVDPATGEVVKE 82 (83)
T ss_pred ceEEEEEcCCCE----EEEEEEEC------CCC-----EEEEEEcCCCCeEeec
Confidence 888877543434 88887655 444 5799999999999863
No 25
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=27.09 E-value=3.8e+02 Score=22.53 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=51.0
Q ss_pred cchhhhhhcCCCccccCCceeeecchhHHHHHHHHHHHHHHHHhCCccccccccce---EeeC-CcccccchHHHHhhHH
Q 019804 82 KSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSV---KYKD-PTRSFTGREKYKRRLW 157 (335)
Q Consensus 82 ~s~~d~~vdg~~f~e~CdeF~C~SSp~VE~t~rqlarDi~~~rtGnrt~sIYApDV---~FKD-PFn~FrGrErYkr~~~ 157 (335)
+|=+|+|.|.- ++.... ....-++....+.+||..+.....-.....+|. -|.| +++.-..+..+.+ .
T Consensus 2 ~sL~dRL~~~~--~~~~~~----~~~~~~~l~~sI~~~L~~LLnTr~g~~~~~~~yGl~d~~~~~~~~~~~~~~i~~--~ 73 (133)
T TIGR03357 2 PSLFERLPDAS--SESPST----RRSSAEQLRESIRRHLERLLNTRRGSCASLPDYGLPDLNDLSLSSADDRRRIRR--A 73 (133)
T ss_pred cCHHHHhcccC--CCCCcc----ccCCHHHHHHHHHHHHHHHHccCCCccccccccCCcccccccccCHHHHHHHHH--H
Confidence 34567776321 344442 233446667777777777743222111222222 2332 2222122222333 3
Q ss_pred HHhhc--CCCeEEEEEEEEec--CCEEEEEEEEeeecC
Q 019804 158 ATTAL--DNPSVTVQEMVMLS--TSVLSIKWTLRGKPK 191 (335)
Q Consensus 158 M~~~L--~nPrf~V~eI~m~s--~dti~irWrL~g~~k 191 (335)
+...+ .+||+.+.++.... .....+++++.+..+
T Consensus 74 I~~aI~r~EPRl~~~~V~~~~~~~~~~~l~f~I~~~l~ 111 (133)
T TIGR03357 74 IEQAIERYEPRLSSVRVTALEDEEDPLALRFRIEAELD 111 (133)
T ss_pred HHHHHHhcCCCcCceEEEEecCCCCccEEEEEEEEEEE
Confidence 33333 57888888877542 344677788888766
No 26
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=27.06 E-value=2.5e+02 Score=22.78 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhCCc--cccccccceEeeCCc-ccccchHHHHhhHHHHhhcC--CCeEEEEE
Q 019804 109 VESTARQLVRDILELREGNR--ALGTFAVSVKYKDPT-RSFTGREKYKRRLWATTALD--NPSVTVQE 171 (335)
Q Consensus 109 VE~t~rqlarDi~~~rtGnr--t~sIYApDV~FKDPF-n~FrGrErYkr~~~M~~~L~--nPrf~V~e 171 (335)
.|+++.+.++.+-.....++ +..+|.++..|-=+- +.+.|++.+.... ..+. ..+..|..
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l---~~lp~~~~~~~i~~ 66 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKL---SSLPFQKTKHKITT 66 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHH---HhCCCcceEEEEEE
Confidence 46788888888888876664 889999999999888 8999999998862 3343 44444444
No 27
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=26.57 E-value=50 Score=30.78 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEeeeccCCC-CcHHHHHHHhhhhHHHHh
Q 019804 218 VIEHEELWDLSA-SSPVARAFFWASRRLYAT 247 (335)
Q Consensus 218 VvsH~DyWD~S~-~dvlaQ~f~~~sR~~~a~ 247 (335)
...|+||||-=+ -|++++.-|..--|+|+.
T Consensus 32 LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~ 62 (202)
T PF06764_consen 32 LAFHVDYWDYLGWKDPFASPEFTQRQRAYAR 62 (202)
T ss_dssp EEEE-STT-SSSS--TT--HHHHHHHHHHHH
T ss_pred EEecCCcccCCCCCCccCChhHHHHHHHHHH
Confidence 357999999865 689999988887788885
No 28
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=26.56 E-value=5.3e+02 Score=23.98 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=59.9
Q ss_pred cccccccceEeeCCcc------cccchHHHHhh-HHHHhhcCCCeEEEEEEEEe-cCCEEEEEEEEeeecCccccccCCc
Q 019804 129 ALGTFAVSVKYKDPTR------SFTGREKYKRR-LWATTALDNPSVTVQEMVML-STSVLSIKWTLRGKPKSIIANIGGD 200 (335)
Q Consensus 129 t~sIYApDV~FKDPFn------~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~-s~dti~irWrL~g~~klpwas~gGr 200 (335)
-..+|++|=.=--+.. .++|+++.++. .|..+-|.|=...-..|-.. +++.+.++-+=+|+...|=-+ .|.
T Consensus 38 Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i~fpGyp-eg~ 116 (162)
T PF03284_consen 38 RHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQDPNHFWVECDGRGKILFPGYP-EGY 116 (162)
T ss_dssp GGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE--TTS---EE
T ss_pred hheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccCCCEEEEEecCccceecCCCC-ccc
Confidence 3467777765444443 48999999998 89999887665544443322 568899999999987754100 122
Q ss_pred eEEEEEeEEEEeCCCCcEEEEeeeccC
Q 019804 201 LIVKVYSKFTLNQISGQVIEHEELWDL 227 (335)
Q Consensus 201 l~I~G~Sel~LN~isGrVvsH~DyWD~ 227 (335)
...-----++|+. |+|.+-+||-|+
T Consensus 117 y~NHfiHsFel~n--GkI~~~REFmNp 141 (162)
T PF03284_consen 117 YENHFIHSFELEN--GKIKRNREFMNP 141 (162)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEE-H
T ss_pred ceeeeEEEEEeeC--CEEEeehhhcCH
Confidence 2222233455655 999999999874
No 29
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=25.61 E-value=54 Score=32.85 Aligned_cols=49 Identities=31% Similarity=0.437 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCccccccc---------------------cceEeeCCcccccchHHHHhh
Q 019804 105 SSPLVESTARQLVRDILELREGNRALGTFA---------------------VSVKYKDPTRSFTGREKYKRR 155 (335)
Q Consensus 105 SSp~VE~t~rqlarDi~~~rtGnrt~sIYA---------------------pDV~FKDPFn~FrGrErYkr~ 155 (335)
+=|+|++ +++||.|++.+. |..+.=.|| =|-...||-.+|-|+|.|--+
T Consensus 41 ~fPaV~~-l~~LAa~VR~il-G~~~kitYAADWsEY~~~~p~dg~gd~~f~LDpLWa~~~IDfIGID~Y~PL 110 (299)
T PF13547_consen 41 SFPAVEA-LRALAADVRAIL-GPGTKITYAADWSEYFGYQPADGSGDVYFHLDPLWADPNIDFIGIDNYFPL 110 (299)
T ss_pred CCcHHHH-HHHHHHHHHHHh-CCCceEEEeccCHHhcCcCCCCCCCcccccCcccccCCcCCEEEeeccccc
Confidence 4488987 678999998876 222222222 234668889999999999766
No 30
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=22.39 E-value=76 Score=21.26 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHH
Q 019804 297 CLTSNVIYIAFASVI 311 (335)
Q Consensus 297 ~~~~~vi~l~~~~v~ 311 (335)
+.+++++||+|++++
T Consensus 6 l~~~L~~YL~~aLl~ 20 (26)
T TIGR02115 6 LAVGLFIYLFYALLR 20 (26)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456777788877764
No 31
>PHA02516 W baseplate wedge subunit; Provisional
Probab=21.76 E-value=3.2e+02 Score=22.47 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhCCc----cccccccceEeeCCcccccchHHHHhhHHHHhhc--CCCeEEEEEEEEecCCEEEEE
Q 019804 110 ESTARQLVRDILELREGNR----ALGTFAVSVKYKDPTRSFTGREKYKRRLWATTAL--DNPSVTVQEMVMLSTSVLSIK 183 (335)
Q Consensus 110 E~t~rqlarDi~~~rtGnr----t~sIYApDV~FKDPFn~FrGrErYkr~~~M~~~L--~nPrf~V~eI~m~s~dti~ir 183 (335)
++-++|-.+.|+.=|-|.+ .++.--+|..| -|.+... +.++++. +...+ -+||+.+.++.........+.
T Consensus 12 ~~~I~qsI~~iL~T~~Ger~~~p~fG~~l~dl~~-~~~~~~~-~~~i~~~--i~~aI~~~EPRi~~~~V~v~~~~~g~l~ 87 (103)
T PHA02516 12 LEHIRQSIGDILLTPLGSRVMRREYGSLLPDLID-QPQNPAL-RLQIYAA--CAMALMRWEPRITLTRVQIERAADGRMT 87 (103)
T ss_pred HHHHHHHHHHHHcCCCcccccCcccccchHHHhC-CCCCHHH-HHHHHHH--HHHHHHhcCCCcEEEEEEEEECCCCeEE
Confidence 4556777778877777765 34433456655 5555321 2223322 22232 359999999887655578888
Q ss_pred EEEeeecC
Q 019804 184 WTLRGKPK 191 (335)
Q Consensus 184 WrL~g~~k 191 (335)
+++++..+
T Consensus 88 i~i~~~~~ 95 (103)
T PHA02516 88 VDITGWHV 95 (103)
T ss_pred EEEEEEEc
Confidence 99888765
No 32
>PF08698 Fcf2: Fcf2 pre-rRNA processing; InterPro: IPR014810 This domain is found in eukaryotic nucleolar proteins that are involved in pre-rRNA processing [].
Probab=20.66 E-value=16 Score=30.62 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCcccccCCCCc--ccchhHHHHHH
Q 019804 281 DPTKVSSDSRCF--CFCFCLTSNVI 303 (335)
Q Consensus 281 DP~kFfq~~d~~--~~D~~~~~~vi 303 (335)
||.+||..++.- ---++|||.||
T Consensus 37 DPkrfyK~~~~~~~~Pk~fqvGtiv 61 (99)
T PF08698_consen 37 DPKRFYKKSDWKKKLPKYFQVGTIV 61 (99)
T ss_pred CchhhhhcccccccCCCeEEeEEEe
Confidence 788999988874 35788888775
Done!