BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019805
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 98/236 (41%), Gaps = 26/236 (11%)
Query: 70 SFHSLSQKYGPLMQLKLGLNIMVVCSSAEVAELFLKTHDLTFATRPEILAGKHANYDYLV 129
+F L +KYGP+ +++G V+ ++A+ L F+ RP++ A+ +
Sbjct: 34 NFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKG 93
Query: 130 MPGAPYGPHLRQTRKIYKTELLSPKRLAQFEYMRVEERK--AFMCXXXXXXXXXXXT--- 184
+ A G H + R++ +A F + ++K +C T
Sbjct: 94 IAFADSGAHWQLHRRL---------AMATFALFKDGDQKLEKIICQEISTLCDMLATHNG 144
Query: 185 -PVHLKECVFMFNLAIMSRMLFGKRYTEEN-ENNVVTPKELTEIVEEVFFLSGVLDIGGA 242
+ + VF+ ++S + F Y + E NV+ + E + + ++D+
Sbjct: 145 QSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVI--QNYNEGIIDNLSKDSLVDL--- 199
Query: 243 IPWLAFLDLQGNVKRMKAARKKIDKFYEHVLDEHERHGKRKFKERGTNDMVDVLLQ 298
+PWL ++++K+ K + +L+ + K KF+ +M+D L+Q
Sbjct: 200 VPWLKIFP-NKTLEKLKSHVKIRNDLLNKILENY----KEKFRSDSITNMLDTLMQ 250
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 19/228 (8%)
Query: 73 SLSQKYGPLMQLKLGLNIMVVCSSAEVAELFLKTHDLTFATRPEILAGKHANYDYLVMPG 132
SL+QK GP+ +L+LGL +VV +S E + + FA RP+I + K + +
Sbjct: 51 SLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISL 110
Query: 133 APYGPHLRQTRKIYKTELLSPKRLAQFEYMRVEERKAFMCXXXXXXXXXXXTPVHLKECV 192
Y + +K+ ++ LL R + + V++ C PV +++
Sbjct: 111 GDYSLLWKAHKKLTRSALLLGTRSSMEPW--VDQLTQEFC---ERMRVQAGAPVTIQKEF 165
Query: 193 FMFNLAIMSRMLFGKRYTEENENNVVTPKELTEIVEEVF--FLSGVLDIGGAIPWLAFLD 250
+ +I+ + FG + E+ +V + V+++ + + I +P+L F
Sbjct: 166 SLLTCSIICYLTFGNK-----EDTLV--HAFHDCVQDLMKTWDHWSIQILDMVPFLRFFP 218
Query: 251 LQGNVKRMKAARKKIDKFYEHVLDEHERHGKRKFKERGTNDMVDVLLQ 298
G + R+K A + D H++++ R K DM D +LQ
Sbjct: 219 NPG-LWRLKQAIENRD----HMVEKQLRRHKESMVAGQWRDMTDYMLQ 261
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 25/243 (10%)
Query: 70 SFHSLSQKYGPLMQLKLGLNIMVVCSSAEVAELFLKTHDLTFATRPE-----ILAGKHAN 124
SF L+++YG + Q++LG +VV + L FA RP +++G +
Sbjct: 33 SFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVSGGRS- 91
Query: 125 YDYLVMPGAPYGPHLRQTRKIYKTELLS-----PKRLAQFEYMRVEERKAFMCXXXXXXX 179
M Y H + R+ + + + P+ E + E + +
Sbjct: 92 -----MAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSA 146
Query: 180 XXXXTPVHLKECVFMFNLAIMSRMLFGKRYTEENENNVVTPKELTEIVEEVFFLSGVLDI 239
V + N +MS + FG RY+ ++ +EL EE G +
Sbjct: 147 DGAFLDPRPLTVVAVAN--VMSAVCFGCRYSHDDPEF----RELLSHNEEFGRTVGAGSL 200
Query: 240 GGAIPWLAFLDLQGNVKRMKAARKKIDK-FYEHVLDEHERHGKRKFKERGTNDMVDVLLQ 298
+PWL + V+ + +++++ F +LD+ RH + DM+D +
Sbjct: 201 VDVMPWLQY--FPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPRDMMDAFIL 258
Query: 299 LAD 301
A+
Sbjct: 259 SAE 261
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 6/145 (4%)
Query: 70 SFHSLSQKYGPLMQLKLGLNIMVVCSSAEVAELFLKTHDLTFATRPEILAGKHANYDYLV 129
SF L+Q++GP+ L +G MVV + + L + F+ R + L HA+ D +
Sbjct: 35 SFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGD-LPAFHAHRDRGI 93
Query: 130 MPGAPYGPHLRQTRKIYKTELLSPKRLAQFEYMRVEERKAFMCXXXXXXXXXXXTPVHLK 189
+ GP + R+ T L + Q R++ F+ P L
Sbjct: 94 IFNN--GPTWKDIRRFSLTTLRNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFLI 151
Query: 190 ECVFMFNLAIMSRMLFGKRYTEENE 214
C +++ +LF K + +E
Sbjct: 152 GCA---PCNVIADILFRKHFDYNDE 173
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 71 FHSLSQKYGPLMQLKLGLNIMVVCSSAEVAELFLKTHDLTFATRP-----EILA-GKHAN 124
F L +++G + L+L +VV + L TH A RP +IL G +
Sbjct: 36 FDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQ 95
Query: 125 YDYLVMPGAPYGPHLRQTRKIYKTEL----LSPKRLAQFEYMRVEERKAFMC 172
+L A YGP R+ R+ + L L K L Q+ V E A +C
Sbjct: 96 GVFL----ARYGPAWREQRRFSVSTLRNLGLGKKSLEQW----VTEEAACLC 139
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 71 FHSLSQKYGPLMQLKLGLNIMVVCSSAEVAELFLKTHDLTFATRP-----EILA-GKHAN 124
F L +++G + L+L +VV + L TH A RP +IL G +
Sbjct: 36 FDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQ 95
Query: 125 YDYLVMPGAPYGPHLRQTRKIYKTEL----LSPKRLAQFEYMRVEERKAFMC 172
+L A YGP R+ R+ + L L K L Q+ V E A +C
Sbjct: 96 GVFL----ARYGPAWREQRRFSVSTLRNLGLGKKSLEQW----VTEEAACLC 139
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 74 LSQKYGPLMQLKLGLNIMVVCSSAEVAELFLKTHDLTFATRPEI 117
+SQ+YG ++Q+++G +VV S + L F RP++
Sbjct: 39 MSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,513,074
Number of Sequences: 62578
Number of extensions: 306275
Number of successful extensions: 642
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 7
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)