BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019806
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 78

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 48/61 (78%)

Query: 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT 246
           +EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESRH HAM R RG GGRF + 
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP 61

Query: 247 K 247
           K
Sbjct: 62  K 62


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLN 245
           + P+YVNAKQ+  IL+RR  R KLE Q +L  KGRKPYLHESRH HAM R RG GGRFL 
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLT 61


>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
          Length = 264

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 162 QAMIHHPQMMGMAPARVPL----PLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLV 217
            A++  P ++GMA A+  L    PL   E E + + A    A+   + Y   LE   +L 
Sbjct: 151 HAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVAL---AVEDEKVYEKALEVAERLA 207

Query: 218 KGRKPYLHESRHA 230
           +G K  LH ++HA
Sbjct: 208 QGPKEALHHTKHA 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,185,225
Number of Sequences: 62578
Number of extensions: 342832
Number of successful extensions: 644
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 7
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)