Query 019806
Match_columns 335
No_of_seqs 149 out of 223
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1561 CCAAT-binding factor, 100.0 7.7E-50 1.7E-54 378.3 17.0 256 43-300 22-306 (307)
2 smart00521 CBF CCAAT-Binding t 100.0 2.3E-37 5E-42 236.3 5.1 61 186-246 2-62 (62)
3 PF02045 CBFB_NFYA: CCAAT-bind 100.0 4.6E-35 1E-39 221.3 3.0 57 187-243 1-58 (58)
4 COG5224 HAP2 CCAAT-binding fac 99.8 1.3E-21 2.9E-26 180.1 2.7 68 187-256 158-225 (248)
5 PF06203 CCT: CCT motif; Inte 73.9 2.4 5.3E-05 31.4 1.9 27 221-248 19-45 (45)
6 KOG1561 CCAAT-binding factor, 68.6 3.5 7.6E-05 40.7 2.3 44 200-248 14-57 (307)
7 PF15046 DUF4532: Protein of u 26.3 1.5E+02 0.0034 29.4 5.6 23 185-207 130-152 (279)
8 PF12254 DNA_pol_alpha_N: DNA 21.1 78 0.0017 25.1 2.2 22 185-206 21-44 (67)
9 PF10200 Ndufs5: NADH:ubiquino 18.4 1.3E+02 0.0028 25.5 3.0 25 193-217 69-93 (96)
10 PF11112 PyocinActivator: Pyoc 16.1 1.7E+02 0.0037 23.5 3.1 35 175-209 39-76 (76)
No 1
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=100.00 E-value=7.7e-50 Score=378.31 Aligned_cols=256 Identities=29% Similarity=0.340 Sum_probs=185.7
Q ss_pred cccceeeccccccccccccccccccCCCCcccc-CCCCc---ccccccccCC-------CCCCccccCCCCCCcccccCC
Q 019806 43 CLSLKMAVPRQQFANTKQLSFQFQDQESSSTQS-TGQSC---SKEACVKDDN-------PSRQSVVSAPPGFNGIHVKPV 111 (335)
Q Consensus 43 ~lslk~~~~~~~~~~~K~~~~q~~dqdSsStqS-tgqS~---~ev~~~~~~~-------~~~q~~~s~~~~~~g~~~k~~ 111 (335)
.+..+.....+....++..+.+++++||+.++| ++++. .|++.-++.+ ..-|..++..+.+. ++++.
T Consensus 22 q~~~~~~~~~~~~p~~~~s~~~~q~~~s~~~~s~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~s~~s~~~--~v~~~ 99 (307)
T KOG1561|consen 22 QKPEERGVQTTKKPYLHESGHKHQMGPGGRFLSADGVSKLRAQEAANGGSTGDDVNATNNDAQVAATVSSEVT--HVEGY 99 (307)
T ss_pred ccccccccccccccccCcccccccccccccccCccccccccccccccccccccccccccccceeeeccCCcce--ecccc
Confidence 445555666677778999999999999999999 67777 5766665554 34455555555433 24555
Q ss_pred CCccccc-cccCCCCcc-cCCCC-CCCCCcccccc-CCCCCCcccccccC--CCCCccc-ccCCcccCCCC-CccCCCcc
Q 019806 112 GGHSKLA-SSMGPHDFV-FTPPH-VDYNQSVAPFQ-LHYAEPYFSGLLSP--FLPPQAM-IHHPQMMGMAP-ARVPLPLE 183 (335)
Q Consensus 112 ~~~~k~~-~~~~~~d~~-~~~~q-~~~gqs~a~~~-ypy~dpyygg~~aa--~Yg~q~~-~~~p~~~G~~~-~r~pLP~~ 183 (335)
.+..++. .++++.-.. .+... .-..+..+++. +||.+|||+|++.. +|++|+. .+++++.||.+ .|+|||.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~ 179 (307)
T KOG1561|consen 100 ADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQT 179 (307)
T ss_pred ccccccccccccccccccCcccccccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCcc
Confidence 5555542 223322211 11111 12445555554 78899999999994 4999987 67999999999 99999999
Q ss_pred cCCCCceeechhhhHHHHHHHHHHHHHHHhcccccCCCCccccccccccccccCCCCCccccCCCccccccccCCCCCC-
Q 019806 184 LAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELD- 262 (335)
Q Consensus 184 ~~e~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~~~~~~~- 262 (335)
+.|+|||||||||||||||||++|||||+++||+|.||||||||||+|||||+||+|||||++||.++........+..
T Consensus 180 ~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss~~~~~~~~~ 259 (307)
T KOG1561|consen 180 DSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDSSFIPHNPMDS 259 (307)
T ss_pred ccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhhcccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999966544322222211
Q ss_pred --------cchhhhcccCCCCCCccccCCccccccCCcccccC-CCc
Q 019806 263 --------MSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQ-PEF 300 (335)
Q Consensus 263 --------~s~~~~~~~~~~~~~s~~s~Sdvts~sn~~~~f~q-~~~ 300 (335)
++..++.........++++++|++.+.+..++|.+ .+|
T Consensus 260 ~~s~~~~~ps~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~g~~~~~ 306 (307)
T KOG1561|consen 260 IDSSDVNDPTATGLPVDIDPLNLTGNTQDSMIIGQQTYPSHGSSGTM 306 (307)
T ss_pred cCcccccCCcccccccCCCCCCCCCCcccceeeccccccccccccCC
Confidence 22222222123345667788888888888888875 554
No 2
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=100.00 E-value=2.3e-37 Score=236.26 Aligned_cols=61 Identities=82% Similarity=1.205 Sum_probs=59.6
Q ss_pred CCCceeechhhhHHHHHHHHHHHHHHHhcccccCCCCccccccccccccccCCCCCccccC
Q 019806 186 EDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT 246 (335)
Q Consensus 186 e~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~ 246 (335)
+|+|||||||||++|||||++|||+|+++||++.||||||||||+|||+|+||+||||||+
T Consensus 2 ~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~ 62 (62)
T smart00521 2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62 (62)
T ss_pred CCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence 6799999999999999999999999999999999999999999999999999999999985
No 3
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4.6e-35 Score=221.33 Aligned_cols=57 Identities=79% Similarity=1.200 Sum_probs=56.2
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhccc-ccCCCCccccccccccccccCCCCCcc
Q 019806 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKGRKPYLHESRHAHAMNRARGSGGRF 243 (335)
Q Consensus 187 ~ePvyVNaKQy~rIlrRR~~Rakle~~~kl-~k~rk~YlHESRH~HAm~R~Rg~gGRF 243 (335)
|+|||||||||++|||||++|||||+++|| ++.||||||||||+|||+|+||+||||
T Consensus 1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence 599999999999999999999999999999 999999999999999999999999999
No 4
>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]
Probab=99.83 E-value=1.3e-21 Score=180.06 Aligned_cols=68 Identities=43% Similarity=0.572 Sum_probs=62.5
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhcccccCCCCccccccccccccccCCCCCccccCCCcccccccc
Q 019806 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNL 256 (335)
Q Consensus 187 ~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~ 256 (335)
.+|.|||||||++|+|||-+|++|+.. |.-.|..|||||||+|||+|+|+++||||+++|+++++.+.
T Consensus 158 fqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln~tG 225 (248)
T COG5224 158 FQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTG 225 (248)
T ss_pred cCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhhhcC
Confidence 589999999999999999999999985 55677779999999999999999999999999999999653
No 5
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=73.90 E-value=2.4 Score=31.36 Aligned_cols=27 Identities=41% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCccccccccccccccCCCCCccccCCC
Q 019806 221 KPYLHESRHAHAMNRARGSGGRFLNTKK 248 (335)
Q Consensus 221 k~YlHESRH~HAm~R~Rg~gGRFl~~~e 248 (335)
|.-.+++|..=|..|+|-. |||++.+|
T Consensus 19 kkirY~~Rk~~A~~R~Rvk-GRFvk~~e 45 (45)
T PF06203_consen 19 KKIRYESRKAVADKRPRVK-GRFVKKSE 45 (45)
T ss_pred ccCCcchHHHHHhhCCccC-CcccCCCC
Confidence 4567899999999999976 99998875
No 6
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=68.59 E-value=3.5 Score=40.69 Aligned_cols=44 Identities=52% Similarity=0.885 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcccccCCCCccccccccccccccCCCCCccccCCC
Q 019806 200 ILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKK 248 (335)
Q Consensus 200 IlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e 248 (335)
+++++..+++.+.. -.....+||++|+.+.|.+ +.+++|++..+
T Consensus 14 ~~~~~~~~q~~~~~-~~~~~~~p~~~~s~~~~q~----~~s~~~~s~~g 57 (307)
T KOG1561|consen 14 ILKRREARQKPEER-GVQTTKKPYLHESGHKHQM----GPGGRFLSADG 57 (307)
T ss_pred cccccccccccccc-ccccccccccCcccccccc----cccccccCccc
Confidence 88888888888755 4678899999999999999 88999998443
No 7
>PF15046 DUF4532: Protein of unknown function (DUF4532)
Probab=26.26 E-value=1.5e+02 Score=29.40 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.2
Q ss_pred CCCCceeechhhhHHHHHHHHHH
Q 019806 185 AEDEPIYVNAKQYRAILRRRQYR 207 (335)
Q Consensus 185 ~e~ePvyVNaKQy~rIlrRR~~R 207 (335)
....||||++++=+.++.|=++.
T Consensus 130 I~~~pif~D~~rK~qvI~rt~KE 152 (279)
T PF15046_consen 130 ISCTPIFVDPNRKNQVILRTVKE 152 (279)
T ss_pred hhcccceechhhhhHHHHHHHHH
Confidence 35699999999999888775543
No 8
>PF12254 DNA_pol_alpha_N: DNA polymerase alpha subunit p180 N terminal; InterPro: IPR024647 This entry represents the N-terminal domain of DNA polymerase alpha catalytic subunit (the DNA polymerase alpha complex is composed of four subunits). This domain is approximately 70 amino acids in length and it contains a specific labile site [].
Probab=21.14 E-value=78 Score=25.12 Aligned_cols=22 Identities=41% Similarity=0.833 Sum_probs=18.4
Q ss_pred CCCCcee--echhhhHHHHHHHHH
Q 019806 185 AEDEPIY--VNAKQYRAILRRRQY 206 (335)
Q Consensus 185 ~e~ePvy--VNaKQy~rIlrRR~~ 206 (335)
.++++|| |..++|..|.+.|..
T Consensus 21 ~e~~~IYdeVdE~eY~~~v~~R~~ 44 (67)
T PF12254_consen 21 EEEEDIYDEVDEEEYRKLVRKRLQ 44 (67)
T ss_pred hcccccceeeCHHHHHHHHHHHHh
Confidence 3668898 999999999998854
No 9
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=18.42 E-value=1.3e+02 Score=25.53 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhcccc
Q 019806 193 NAKQYRAILRRRQYRAKLEAQNKLV 217 (335)
Q Consensus 193 NaKQy~rIlrRR~~Rakle~~~kl~ 217 (335)
--||+.|...-|+.|.|+-.+||..
T Consensus 69 ~~Ke~~R~~aI~kqR~K~~keGk~t 93 (96)
T PF10200_consen 69 HTKEMKRMRAIRKQRDKQIKEGKYT 93 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCC
Confidence 3689999999999999999998854
No 10
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=16.06 E-value=1.7e+02 Score=23.51 Aligned_cols=35 Identities=26% Similarity=0.569 Sum_probs=28.3
Q ss_pred CCccCCCc---ccCCCCceeechhhhHHHHHHHHHHHH
Q 019806 175 PARVPLPL---ELAEDEPIYVNAKQYRAILRRRQYRAK 209 (335)
Q Consensus 175 ~~r~pLP~---~~~e~ePvyVNaKQy~rIlrRR~~Rak 209 (335)
.+++|||+ +..+..|-+|.-...-..|-+|...||
T Consensus 39 ~g~lplPv~rl~~SqKs~~~V~v~dLA~yiD~~~~~A~ 76 (76)
T PF11112_consen 39 AGELPLPVFRLDDSQKSPKFVHVQDLAAYIDKRREEAK 76 (76)
T ss_pred CCCCCCceeecCCcccCCceeeHHHHHHHHHHHHHhcC
Confidence 47899994 445678999999999999988877664
Done!