Query 019806
Match_columns 335
No_of_seqs 149 out of 223
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.2E-37 4.1E-42 238.1 4.0 62 187-248 2-64 (64)
2 3hde_A Lysozyme; antimicrobial 10.2 1.3E+02 0.0043 25.6 2.0 24 189-212 138-161 (165)
3 1xju_A Lysozyme; secreted inac 9.6 1.4E+02 0.0046 25.2 2.0 26 189-214 128-153 (163)
4 2anv_A Lysozyme; direct method 8.8 94 0.0032 25.5 0.7 21 189-210 123-143 (146)
5 1xjt_A Lysozyme; open conforma 7.7 1.8E+02 0.0061 25.3 2.0 26 189-214 156-181 (191)
6 1b9w_A Protein (merozoite surf 7.0 75 0.0026 26.0 -0.7 19 139-157 70-89 (95)
7 1qfq_B N36, 36-MER N-terminal 6.9 1.9E+02 0.0066 19.6 1.4 13 201-213 4-16 (35)
8 3eoi_A PILM; structural genomi 6.8 1.6E+02 0.0054 24.5 1.2 17 177-193 108-124 (124)
9 3gxv_A Replicative DNA helicas 6.3 3.1E+02 0.011 21.7 2.6 25 188-212 88-112 (123)
10 2r5u_A Replicative DNA helicas 6.0 2.8E+02 0.0096 23.6 2.4 27 186-212 111-137 (200)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.2e-37 Score=238.10 Aligned_cols=62 Identities=65% Similarity=1.077 Sum_probs=58.8
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhcccc-cCCCCccccccccccccccCCCCCccccCCC
Q 019806 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLNTKK 248 (335)
Q Consensus 187 ~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e 248 (335)
|+|||||||||++|||||++|||||++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 5999999999999999999999999999995 8899999999999999999999999999986
No 2
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=10.17 E-value=1.3e+02 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=19.4
Q ss_pred ceeechhhhHHHHHHHHHHHHHHH
Q 019806 189 PIYVNAKQYRAILRRRQYRAKLEA 212 (335)
Q Consensus 189 PvyVNaKQy~rIlrRR~~Rakle~ 212 (335)
-+|++-|...++.+||++..+|=.
T Consensus 138 W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 138 WTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHT
T ss_pred HhhcCCEEchhHHHHHHHHHHHHH
Confidence 456677889999999999887743
No 3
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=9.63 E-value=1.4e+02 Score=25.21 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.7
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHhc
Q 019806 189 PIYVNAKQYRAILRRRQYRAKLEAQN 214 (335)
Q Consensus 189 PvyVNaKQy~rIlrRR~~Rakle~~~ 214 (335)
-+|++-|...++.+||++.+.|=..+
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 45667788999999999998886544
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=8.75 E-value=94 Score=25.50 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=16.6
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 019806 189 PIYVNAKQYRAILRRRQYRAKL 210 (335)
Q Consensus 189 PvyVNaKQy~rIlrRR~~Rakl 210 (335)
-+|++-| ..++.+||++.+.|
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566678 88999999988776
No 5
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.70 E-value=1.8e+02 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.7
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHhc
Q 019806 189 PIYVNAKQYRAILRRRQYRAKLEAQN 214 (335)
Q Consensus 189 PvyVNaKQy~rIlrRR~~Rakle~~~ 214 (335)
-+|++-|...++.+||++.+.|=..+
T Consensus 156 W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 156 FVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 45667788999999999998886544
No 6
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=7.04 E-value=75 Score=25.96 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.8
Q ss_pred cccc-cCCCCCCcccccccC
Q 019806 139 VAPF-QLHYAEPYFSGLLSP 157 (335)
Q Consensus 139 ~a~~-~ypy~dpyygg~~aa 157 (335)
|.|. ..||..|||.|+|-.
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 6666 789999999999865
No 7
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.85 E-value=1.9e+02 Score=19.62 Aligned_cols=13 Identities=54% Similarity=0.659 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHh
Q 019806 201 LRRRQYRAKLEAQ 213 (335)
Q Consensus 201 lrRR~~Rakle~~ 213 (335)
-|||++||...++
T Consensus 4 ~rrrerra~kqa~ 16 (35)
T 1qfq_B 4 TRRRERRAEKQAQ 16 (35)
T ss_dssp HHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHhh
Confidence 3677777655544
No 8
>3eoi_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.52A {Escherichia coli}
Probab=6.83 E-value=1.6e+02 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=15.4
Q ss_pred ccCCCcccCCCCceeec
Q 019806 177 RVPLPLELAEDEPIYVN 193 (335)
Q Consensus 177 r~pLP~~~~e~ePvyVN 193 (335)
.++||.-+++.-.||||
T Consensus 108 ~i~lPa~Ip~GsiVy~n 124 (124)
T 3eoi_A 108 SITLPAVIPDQVIIWMN 124 (124)
T ss_dssp CCCCCTTSCSSEEEEEC
T ss_pred cCcCCCcCCCCCEEeeC
Confidence 48999999999999998
No 9
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=6.28 E-value=3.1e+02 Score=21.74 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=20.3
Q ss_pred CceeechhhhHHHHHHHHHHHHHHH
Q 019806 188 EPIYVNAKQYRAILRRRQYRAKLEA 212 (335)
Q Consensus 188 ePvyVNaKQy~rIlrRR~~Rakle~ 212 (335)
-|--.|.+.|-+|+|.+..|.++-.
T Consensus 88 ~ps~ani~~Ya~iV~e~s~~R~li~ 112 (123)
T 3gxv_A 88 ASPIDNIEAYVEEIKNASIKRKLFG 112 (123)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556799999999999988887743
No 10
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=6.01 E-value=2.8e+02 Score=23.60 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.6
Q ss_pred CCCceeechhhhHHHHHHHHHHHHHHH
Q 019806 186 EDEPIYVNAKQYRAILRRRQYRAKLEA 212 (335)
Q Consensus 186 e~ePvyVNaKQy~rIlrRR~~Rakle~ 212 (335)
..-|-..|.+.|-+|++.+..|.++..
T Consensus 111 ~~~~s~ani~~Ya~iV~e~~~~R~li~ 137 (200)
T 2r5u_A 111 STVPTAANAGYYASIVAEKALLRRLVE 137 (200)
T ss_dssp TTCSSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566699999999998888766644
Done!