BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019808
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
           Aeolicus
          Length = 216

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 104 DFCSRPILDIRGKKIWELVVCDG---SLSLQYTKYFPNNVIN 142
           +F  R  L+++ K + ELVV  G    LS  + KYFPN VIN
Sbjct: 67  EFEERXALELKKKGV-ELVVLAGFXRILSHNFLKYFPNKVIN 107


>pdb|3V9A|A Chain A, Crystal Structure Of EsteraseLIPASE FROM UNCULTURED
           BACTERIUM
          Length = 309

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 222 LALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGL--EVCSIETDTARGSLILSVGISTR 278
           LA ++PFP  + D +   +W   Q        G   +  SI  D+A G L+L+V +S R
Sbjct: 108 LAPEHPFPAAVEDGVAAYRWLLDQ--------GFKPQHLSISGDSAGGGLVLAVLVSAR 158


>pdb|3FAK|A Chain A, Structural And Functional Analysis Of A Hormone-Sensitive
           Lipase Like Este5 From A Metagenome Library
 pdb|3G9T|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
           Butyrate For 5sec
 pdb|3G9U|A Chain A, Crystal Structure Of Este5, Was Soaked By P-nitrophenyl
           Butyrate For 5min
 pdb|3G9Z|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
           Caprylate
 pdb|3H17|A Chain A, Crystal Structure Of Este5-Pmsf (I)
 pdb|3H18|A Chain A, Crystal Structure Of Este5-pmsf (ii)
 pdb|3H19|A Chain A, Crystal Structure Of Este5, Was Soaked By Methyl Alcohol
 pdb|3H1A|A Chain A, Crystal Structure Of Este5, Was Soaked By Ethyl Alcohol
 pdb|3H1B|A Chain A, Crystal Structure Of Este5, Was Soaked By Isopropyl
           Alcohol
 pdb|3L1H|A Chain A, Crystal Structure Of Este5, Was Soaked By Fecl3
 pdb|3L1I|A Chain A, Crystal Structure Of Este5, Was Soaked By Cuso4
 pdb|3L1J|A Chain A, Crystal Structure Of Este5, Was Soaked By Znso4
          Length = 322

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 222 LALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTR 278
           LA ++PFP  + D +   +W   Q  F       +  SI  D+A G L+L+V +S R
Sbjct: 121 LAPEHPFPAAVEDGVAAYRWLLDQ-GFKP-----QHLSISGDSAGGGLVLAVLVSAR 171


>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
          Length = 426

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 29/138 (21%)

Query: 126 GSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDI 185
           G   L+  + +  +++        ++A C    VP+ +  ++F S    +I    +EL  
Sbjct: 28  GHYELKLAEGYETHLVGIKNNNNEVIAACLLTAVPVMKVFKYFYSNRGPVIDYENQELVH 87

Query: 186 -------KPIPSKRCLSLLL----------------------WLEERYETVYTRHPGFQK 216
                  K +   RCL L +                      W  ++   +   H GF K
Sbjct: 88  FFFNELSKYVKKHRCLYLHIDPYLPYQYLNHDGEITGNAGNDWFFDKMSNLGFEHTGFHK 147

Query: 217 GSKPLLALDNPFPMELPD 234
           G  P+L +     ++L D
Sbjct: 148 GFDPVLQIRYHSVLDLKD 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,400,890
Number of Sequences: 62578
Number of extensions: 363535
Number of successful extensions: 605
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 4
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)