BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019808
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1JHR0|ASNA_YERE8 Aspartate--ammonia ligase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=asnA PE=3 SV=1
Length = 330
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I EA ++ D+ +PE+I F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAIKETEAAISAEFDIKPFLPEQIHFIHSE 171
>sp|B1JR29|ASNA_YERPY Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q66GH8|ASNA_YERPS Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|A4TSI1|ASNA_YERPP Aspartate--ammonia ligase OS=Yersinia pestis (strain Pestoides F)
GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q1CNU4|ASNA_YERPN Aspartate--ammonia ligase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|A9QYG3|ASNA_YERPG Aspartate--ammonia ligase OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q8ZJT3|ASNA_YERPE Aspartate--ammonia ligase OS=Yersinia pestis GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|B2K7I9|ASNA_YERPB Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q1CC50|ASNA_YERPA Aspartate--ammonia ligase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|A7FCM9|ASNA_YERP3 Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=asnA PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|A8F962|SYC_BACP2 Cysteine--tRNA ligase OS=Bacillus pumilus (strain SAFR-032) GN=cysS
PE=3 SV=1
Length = 466
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 130 LQYTKYFPNNVINSITLKEAIVAICDDLGVPIPE-KIRFFRSQMQTIITKACKELDIKPI 188
L+Y+ Y N V N + + ++ ++LG +P RF ++ + + CK+ D+ P
Sbjct: 55 LEYSGYDVNFVSNFTDVDDKLIKAANELGEDVPTIADRFIQAYFEDVSALGCKKADLHPR 114
Query: 189 PSKRCLSLLLWLEERYETVY 208
++ ++ ++E E Y
Sbjct: 115 VTENMDDIIAFIETLIEKGY 134
>sp|Q9UL58|ZN215_HUMAN Zinc finger protein 215 OS=Homo sapiens GN=ZNF215 PE=2 SV=2
Length = 517
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 37/155 (23%)
Query: 23 KPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKEADAEIEADDVE--D 80
+P+SK +++KP N+S R + V + +S +E + +E D E
Sbjct: 2 QPLSKLMAISKPRNLS-------------LREQREVLRADMSWQQETNPVVETHDSEASR 48
Query: 81 DPTQELSYLDEETDPESITE-WELDFC---SRPILDIRGKKIWELVVCDGSLS------- 129
+ YL E++++ WEL C RP + + K+I EL+V + L+
Sbjct: 49 QKFRHFQYLKVSGPHEALSQLWEL--CLQWLRPEIHTK-KQIIELLVLEQFLAILPEEVR 105
Query: 130 ----LQYTKYFPNNVINSITLKEAIVAICDDLGVP 160
LQ+ PNN + +TL E ++ + +D +P
Sbjct: 106 TWVNLQH----PNNSKDMVTLIEDVIEMLEDEDMP 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,012,098
Number of Sequences: 539616
Number of extensions: 5849814
Number of successful extensions: 17522
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 17476
Number of HSP's gapped (non-prelim): 53
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)