Query 019808
Match_columns 335
No_of_seqs 102 out of 111
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 04:42:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06485 DUF1092: Protein of u 100.0 3E-107 6E-112 764.6 26.3 227 101-329 1-270 (270)
2 PF00665 rve: Integrase core d 96.8 0.007 1.5E-07 47.7 7.8 92 99-192 7-100 (120)
3 COG3607 Predicted lactoylgluta 63.3 4.7 0.0001 35.9 1.9 31 89-127 100-130 (133)
4 PHA02517 putative transposase 47.0 92 0.002 28.8 7.6 86 98-192 110-202 (277)
5 PF07058 Myosin_HC-like: Myosi 30.8 28 0.0006 35.3 1.5 55 148-203 45-117 (351)
6 PF05282 AAR2: AAR2 protein; 30.0 43 0.00092 33.0 2.7 31 297-327 30-63 (362)
7 COG0191 Fba Fructose/tagatose 25.0 1.4E+02 0.0031 29.7 5.3 47 139-188 24-79 (286)
8 cd08494 PBP2_NikA_DppA_OppA_li 23.9 1.3E+02 0.0028 29.2 4.8 49 152-202 305-359 (448)
9 cd00995 PBP2_NikA_DppA_OppA_li 21.8 1.3E+02 0.0028 29.0 4.3 43 152-194 310-361 (466)
10 PRK14866 hypothetical protein; 21.1 1.5E+02 0.0032 31.3 4.7 96 149-264 228-345 (451)
11 PF05009 EBV-NA3: Epstein-Barr 20.3 34 0.00074 33.5 0.0 24 79-111 228-251 (255)
No 1
>PF06485 DUF1092: Protein of unknown function (DUF1092); InterPro: IPR009472 This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria.
Probab=100.00 E-value=2.7e-107 Score=764.64 Aligned_cols=227 Identities=52% Similarity=0.930 Sum_probs=223.4
Q ss_pred eecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHHHHHHHHh
Q 019808 101 WELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKAC 180 (335)
Q Consensus 101 WELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~nmI~kAc 180 (335)
||||||||||+|++|||+|||||||++++|+|+++||||+|||+||++||++|+++ |+.+|++|||||+||+|||++||
T Consensus 1 WElDFYsRPi~d~~gkk~WELLIcd~~~~f~~~~~cP~~~vNS~wL~~al~~a~~~-~~~~P~~Ir~FR~qm~~mI~~A~ 79 (270)
T PF06485_consen 1 WELDFYSRPILDENGKKLWELLICDSPGSFRYAKFCPNSEVNSIWLRQALEEAIDQ-GGEKPDRIRFFRSQMLNMITKAC 79 (270)
T ss_pred CccccccCcccCCCCCeeEEEEEEcCCCCEEEEEeCCCCccCHHHHHHHHHHHHHh-cCCCCcEEEEEhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 78999999999999999999999
Q ss_pred hhCCCccccccchHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCeeEEEeeccc-----------
Q 019808 181 KELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFS----------- 249 (335)
Q Consensus 181 ~~LgI~v~PSRRT~aL~~WL~ER~e~VYp~~pGY~~~~~~p~~~~~~~P~pLPdaL~Ge~WaFvsLpa~----------- 249 (335)
++|||+++||||||||++||+||+++|||+|+||++++++++++++++|+|||||||||+|+||+||++
T Consensus 80 ~~lgI~~~pSRRt~aL~~wL~eR~~~vYp~~~gy~~~~~~~~~~~~~~P~pLPdaL~Ge~W~FvsLp~~~l~e~~e~~i~ 159 (270)
T PF06485_consen 80 EELGIPVEPSRRTYALKQWLEEREEEVYPQEPGYQPGAPPPVALDPPPPQPLPDALRGEKWAFVSLPAGDLREAFEWPIP 159 (270)
T ss_pred HHCCCceeecccHHHHHHHHHHHHHHhCcCCCCCCCCCCCccccCCCCCCCCChhhCCCceEEEEccHHHHHhhhccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------cccCCcceEEEEEecCCCeEEEeccCCCeEEEEEecCCcchhHHHHHH
Q 019808 250 --------------------------------AWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAW 297 (335)
Q Consensus 250 --------------------------------~WlsGlEp~~L~~d~~~~~LILEtGl~DrWilAt~~d~~~~~~eA~~f 297 (335)
+||+|+|||+|+||.+..+||||||++||||||||+ ++++.+||++|
T Consensus 160 fg~l~Pl~~~l~~~~~IPGv~I~s~~Ral~LA~Wl~glEp~~L~~~~~~~~LiLEaGl~drWi~a~~~-d~~~~~ea~~f 238 (270)
T PF06485_consen 160 FGELLPLPLGLASDTPIPGVVIFSGRRALPLAAWLSGLEPVSLNYDPGEPGLILEAGLDDRWILATLE-DPEAAAEAQAF 238 (270)
T ss_pred ccccCCCCCCCCcCCccceEEEecCcchhHHHHHhccCceEEEEEecCCceEEEecCCcceEEEEeCC-CHHHHHHHHHH
Confidence 999999999999998866999999999999999999 49999999999
Q ss_pred HHHHHHcCCcEEEEEecCCCCCceeeEEeecC
Q 019808 298 EAAKKACGGLHFLAIQEELDSEDCVGFWLLLD 329 (335)
Q Consensus 298 E~aKq~a~GLHFLaVQ~dp~~etfaGFWLL~d 329 (335)
|++|++|+|||||||||||++++|+|||||||
T Consensus 239 e~~K~~a~GlHFLaVQ~d~~~~t~~GFWLL~~ 270 (270)
T PF06485_consen 239 EQAKQAAQGLHFLAVQPDPSSETFAGFWLLQD 270 (270)
T ss_pred HHHHHHcCCceEEEEecCCCCCceeeEEEecC
Confidence 99999999999999999999999999999996
No 2
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=96.80 E-value=0.007 Score=47.72 Aligned_cols=92 Identities=24% Similarity=0.338 Sum_probs=71.5
Q ss_pred eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHHH--HH
Q 019808 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQT--II 176 (335)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~n--mI 176 (335)
..|++|++.-++.+ .|++.|=++++|.-+.+.+...++.. -++..+...|..++...|+..|..|+.=+..-++ .+
T Consensus 7 ~~~~~D~~~~~~~~-~~~~~~~~~~iD~~S~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~p~~i~tD~g~~f~~~~~ 84 (120)
T PF00665_consen 7 ERWQIDFTPMPIPD-KGGRVYLLVFIDDYSRFIYAFPVSSK-ETAEAALRALKRAIEKRGGRPPRVIRTDNGSEFTSHAF 84 (120)
T ss_dssp TEEEEEEEEETGGC-TT-CEEEEEEEETTTTEEEEEEESSS-SHHHHHHHHHHHHHHHHS-SE-SEEEEESCHHHHSHHH
T ss_pred CEEEEeeEEEecCC-CCccEEEEEEEECCCCcEEEEEeecc-cccccccccccccccccccccceecccccccccccchh
Confidence 48999999444444 44489999999998999999999988 6777889999999987653339999987766555 88
Q ss_pred HHHhhhCCCccccccc
Q 019808 177 TKACKELDIKPIPSKR 192 (335)
Q Consensus 177 ~kAc~~LgI~v~PSRR 192 (335)
+..|+++||.+..++.
T Consensus 85 ~~~~~~~~i~~~~~~~ 100 (120)
T PF00665_consen 85 EAWCKHLGIKHVFTPP 100 (120)
T ss_dssp HHHHHHHT-EEEESST
T ss_pred hhHHHHcCceEeeCCC
Confidence 9999999999988774
No 3
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=63.33 E-value=4.7 Score=35.89 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=25.1
Q ss_pred ccCCCCCCcceeeecccccCccccCCCceeEEEEEeeCC
Q 019808 89 LDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGS 127 (335)
Q Consensus 89 ~~p~~~~~~m~iWELDFYSRPilD~~GKKlWELLICd~~ 127 (335)
.+|..|-.. +|+|-..|.+|. +||+|.||.+
T Consensus 100 ~~~~~d~gf-------MYg~~fqDpDGh-~wE~l~m~~~ 130 (133)
T COG3607 100 ANEPQDEGF-------MYGRSFQDPDGH-VWEFLWMDPE 130 (133)
T ss_pred CCCcccccc-------ccceeeeCCCCC-eEEEEEeCHH
Confidence 455555553 799999999999 9999999964
No 4
>PHA02517 putative transposase OrfB; Reviewed
Probab=46.99 E-value=92 Score=28.78 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=54.1
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCee--e-----eehH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKI--R-----FFRS 170 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~I--R-----fFR~ 170 (335)
..+|+.||-.=++ .+.+.+=..|-|.-+.+... +.-....|+.+..++|+.|+...| .|..+ + -|.+
T Consensus 110 n~~w~~D~t~~~~---~~g~~yl~~iiD~~sr~i~~-~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~i~~sD~G~~y~s 183 (277)
T PHA02517 110 NQLWVADFTYVST---WQGWVYVAFIIDVFARRIVG-WRVSSSMDTDFVLDALEQALWARG--RPGGLIHHSDKGSQYVS 183 (277)
T ss_pred CCeEEeceeEEEe---CCCCEEEEEecccCCCeeee-cccCCCCChHHHHHHHHHHHHhcC--CCcCcEeecccccccch
Confidence 3689999865332 23456655565653333222 222445788899999999998753 35432 2 2333
Q ss_pred HHHHHHHHHhhhCCCccccccc
Q 019808 171 QMQTIITKACKELDIKPIPSKR 192 (335)
Q Consensus 171 QM~nmI~kAc~~LgI~v~PSRR 192 (335)
.-++.+|+++||....++.
T Consensus 184 ---~~~~~~~~~~gi~~~~~~~ 202 (277)
T PHA02517 184 ---LAYTQRLKEAGIRASTGSR 202 (277)
T ss_pred ---HHHHHHHHHcCcccccCCC
Confidence 3577899999999887765
No 5
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=30.78 E-value=28 Score=35.31 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCCCCeeeeehHHHHHHHHHH----hhhCCCcccccc--------------chHHHHHHHHHH
Q 019808 148 EAIVAICDDLGVPIPEKIRFFRSQMQTIITKA----CKELDIKPIPSK--------------RCLSLLLWLEER 203 (335)
Q Consensus 148 ~aL~~ai~~a~~~~P~~IRfFR~QM~nmI~kA----c~~LgI~v~PSR--------------RT~aL~~WL~ER 203 (335)
..|++||-. ||..-..||+|++|..-|-..- .+=...+|...| +..-.++||+||
T Consensus 45 ~ELEEaiLa-gGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEER 117 (351)
T PF07058_consen 45 RELEEAILA-GGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEER 117 (351)
T ss_pred HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHH
Confidence 457777776 6678899999999998875321 111223333333 344578999887
No 6
>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins. The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.
Probab=30.00 E-value=43 Score=33.05 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=20.1
Q ss_pred HHHHHHHcCCcEEEEEe---cCCCCCceeeEEee
Q 019808 297 WEAAKKACGGLHFLAIQ---EELDSEDCVGFWLL 327 (335)
Q Consensus 297 fE~aKq~a~GLHFLaVQ---~dp~~etfaGFWLL 327 (335)
|.--|---.|+|||-+| ...+...-.|||.-
T Consensus 30 F~GIK~IPpG~Hfi~~s~~~~~~~~~~R~G~f~~ 63 (362)
T PF05282_consen 30 FKGIKMIPPGVHFIHYSSSSKNGESSPRYGFFFN 63 (362)
T ss_dssp --EEEEE-TT-EEEEEE---ETTECCEEEEEEE-
T ss_pred ceEEecCCCCceEEEEecccCCCCcCceEEEEEE
Confidence 55556666799999999 55555667899985
No 7
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.03 E-value=1.4e+02 Score=29.67 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCeeeeehH---------HHHHHHHHHhhhCCCccc
Q 019808 139 NVINSITLKEAIVAICDDLGVPIPEKIRFFRS---------QMQTIITKACKELDIKPI 188 (335)
Q Consensus 139 s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~---------QM~nmI~kAc~~LgI~v~ 188 (335)
|-.|+.|++..|+.|-+. .+|-.|++=+. ....||...+++.+|||.
T Consensus 24 N~~nlE~~~AileaA~e~---~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~ 79 (286)
T COG0191 24 NINNLETLQAILEAAEEE---KSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVA 79 (286)
T ss_pred eecCHHHHHHHHHHHHHh---CCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEE
Confidence 567999999888877766 67999988543 455788999999999985
No 8
>cd08494 PBP2_NikA_DppA_OppA_like_6 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=23.85 E-value=1.3e+02 Score=29.20 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=33.2
Q ss_pred HHHhhcCCCCCCeeee------ehHHHHHHHHHHhhhCCCccccccchHHHHHHHHH
Q 019808 152 AICDDLGVPIPEKIRF------FRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEE 202 (335)
Q Consensus 152 ~ai~~a~~~~P~~IRf------FR~QM~nmI~kAc~~LgI~v~PSRRT~aL~~WL~E 202 (335)
+.++++|+..+..|++ ++.+|-.+|+..++++||++.---... ..|+..
T Consensus 305 ~lL~~aG~~~g~~l~l~~~~~~~~~~~a~~i~~~l~~~GI~v~i~~~~~--~~~~~~ 359 (448)
T cd08494 305 QLLAEAGAAYGLTLTLTLPPLPYARRIGEIIASQLAEVGITVKIEVVEP--ATWLQR 359 (448)
T ss_pred HHHHHcCCCCCeEEEEEecCCcchhHHHHHHHHHHHhcCcEEEEEEeeH--HHHHHH
Confidence 4556666655445555 578899999999999999987533333 345443
No 9
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=21.85 E-value=1.3e+02 Score=28.99 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHhhcCCCC--CCeeee-------ehHHHHHHHHHHhhhCCCccccccchH
Q 019808 152 AICDDLGVPI--PEKIRF-------FRSQMQTIITKACKELDIKPIPSKRCL 194 (335)
Q Consensus 152 ~ai~~a~~~~--P~~IRf-------FR~QM~nmI~kAc~~LgI~v~PSRRT~ 194 (335)
+.++++|+.. |..|++ -+.+|-.+|+..++++||++.-.....
T Consensus 310 ~lL~~ag~~~~~~~~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~ 361 (466)
T cd00995 310 ELLAEAGYKDGKGLELTLLYNSDGPTRKEIAEAIQAQLKEIGIKVEIEPLDF 361 (466)
T ss_pred HHHHHhCCCCCCceEEEEEeCCCCCcHHHHHHHHHHHHHHcCceEEEEEech
Confidence 4455666544 556665 467888999999999999997755543
No 10
>PRK14866 hypothetical protein; Provisional
Probab=21.14 E-value=1.5e+02 Score=31.31 Aligned_cols=96 Identities=20% Similarity=0.164 Sum_probs=59.4
Q ss_pred HHHHHHhhcCCCCCCeeeeehH----HHHHHHHHHhhhCCCccccc---cc----hHHHHHHHHHHHhhhccCCCCCCCC
Q 019808 149 AIVAICDDLGVPIPEKIRFFRS----QMQTIITKACKELDIKPIPS---KR----CLSLLLWLEERYETVYTRHPGFQKG 217 (335)
Q Consensus 149 aL~~ai~~a~~~~P~~IRfFR~----QM~nmI~kAc~~LgI~v~PS---RR----T~aL~~WL~ER~e~VYp~~pGY~~~ 217 (335)
.|+.|+++ ..++.+=+.|. .-+++|...++++||+++-. |+ .+.+..-|+++..++=| |
T Consensus 228 ~i~~a~~~---~~~~~a~iD~Ks~k~~~r~~i~~~l~~lgl~vi~e~~lr~~~~~~~~~~~~l~~~~~~~~~---g---- 297 (451)
T PRK14866 228 VLRAAFEA---SGADAAYIDRKAMSSGDRPRLEALLEELGLRVLSETWLRETGGVPLSLVRALEDLAGTIDP---G---- 297 (451)
T ss_pred HHHHHHHh---cCCCEEEEecCCCCHHHHHHHHHHHHHCCCEEEEeehhcccCCCCHHHHHHHHHHhhccCC---C----
Confidence 56666666 34789988864 55889999999999999766 33 34666666666553322 2
Q ss_pred CCCCCCCCCCCCCCCCcccCCCeeEEEeeccc-----------cccCCcceEEEEEec
Q 019808 218 SKPLLALDNPFPMELPDNLFGDKWAFVQLPFS-----------AWMNGLEVCSIETDT 264 (335)
Q Consensus 218 ~~~p~~~~~~~P~pLPdaL~Ge~WaFvsLpa~-----------~WlsGlEp~~L~~d~ 264 (335)
-..-.|+.+....+.-|.||.. +-+..++-..|-|.+
T Consensus 298 ----------~r~~~~~~~~~~~~~~~~~~~~Ll~~a~~~d~~~~~~~~~~~~va~~t 345 (451)
T PRK14866 298 ----------LRFGEPARLGDGDPVVVDLPGELLDEAQGVDREAVRAALDEHPVAFLT 345 (451)
T ss_pred ----------CccccccccCCCCcEEEeCCHHHHHHHhhcCHHHHHHHHhhCceEEEe
Confidence 2233444455555666666655 444445444455543
No 11
>PF05009 EBV-NA3: Epstein-Barr virus nuclear antigen 3 (EBNA-3); InterPro: IPR007706 This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)-induced B-cell immortalisation and the immune response to EBVG infection. ; GO: 0016032 viral reproduction, 0042025 host cell nucleus; PDB: 3SJV_H 3DXA_M.
Probab=20.34 E-value=34 Score=33.52 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=0.0
Q ss_pred CCCCCceeeeccCCCCCCcceeeecccccCccc
Q 019808 79 EDDPTQELSYLDEETDPESITEWELDFCSRPIL 111 (335)
Q Consensus 79 ~~~~~~e~~~~~p~~~~~~m~iWELDFYSRPil 111 (335)
|.|..+|+-||.|...+. |.||.+
T Consensus 228 e~dde~elP~ivp~~e~~---------~~RP~~ 251 (255)
T PF05009_consen 228 ESDDEAELPYIVPRMEPK---------QGRPPM 251 (255)
T ss_dssp ---------------------------------
T ss_pred ccCcccCCceecCCCCcc---------cCCCcc
Confidence 444448999999887764 678765
Done!