Query 019808
Match_columns 335
No_of_seqs 102 out of 111
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kks_A Integrase, IN; beta-str 92.7 0.69 2.4E-05 36.0 8.9 81 99-191 3-85 (152)
2 2x78_A Integrase; viral protei 91.4 0.69 2.4E-05 38.3 7.8 87 98-191 13-101 (200)
3 1cxq_A Avian sarcoma virus int 90.3 1.1 3.6E-05 36.2 7.8 86 99-191 12-99 (162)
4 1c0m_A Protein (integrase); HI 89.6 1.2 4E-05 38.9 8.1 87 98-191 10-98 (238)
5 3hph_A Integrase, IN; protein- 81.2 7.4 0.00025 32.8 8.6 81 99-191 61-143 (219)
6 1bco_A MUA domain II, bacterio 81.1 1.5 5.2E-05 40.2 4.6 90 98-191 16-131 (327)
7 3l3u_A POL polyprotein; DNA in 79.6 5.9 0.0002 31.5 7.2 82 98-191 9-92 (163)
8 1c6v_A Protein (SIV integrase) 68.5 7.3 0.00025 30.4 5.0 79 98-191 9-92 (164)
9 3av9_A Integrase, IN; protein- 62.8 41 0.0014 27.5 8.7 81 99-191 30-112 (183)
10 4fcy_A Transposase; rnaseh, DD 62.0 11 0.00036 36.5 5.7 90 98-189 187-300 (529)
11 3oym_A PFV integrase, P42IN; p 58.3 46 0.0016 30.3 9.0 87 98-191 125-213 (395)
12 3f9k_A Integrase; protein-prot 48.2 38 0.0013 28.3 6.3 82 98-191 59-142 (210)
13 1k6y_A Integrase; HIV-1, domai 46.6 58 0.002 26.9 7.1 81 99-191 59-141 (212)
14 1ex4_A Integrase; SH3-like dom 41.1 1E+02 0.0035 26.3 8.0 82 98-191 9-92 (239)
15 3sbt_B A1 cistron-splicing fac 31.9 17 0.00059 35.4 1.7 27 301-327 34-61 (363)
16 4dyq_A Gene 1 protein; GP1, oc 24.5 36 0.0012 27.9 2.2 22 176-202 31-52 (140)
17 3txv_A Probable tagatose 6-pho 22.9 1.2E+02 0.004 30.6 5.9 48 134-187 25-86 (450)
18 3pam_A Transmembrane protein; 20.4 1.2E+02 0.004 26.0 4.7 40 161-202 127-171 (259)
No 1
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=92.75 E-value=0.69 Score=36.02 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=61.3
Q ss_pred eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HHH
Q 019808 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII 176 (335)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nmI 176 (335)
.+||+||-.- |+ .|=++|.|.-..+.+...++ ..++..+..+|..++...| |..|+.=|..-+ ..+
T Consensus 3 ~~w~~D~t~~------~~-~y~~~~iD~~sr~~~~~~~~--~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s~~~ 70 (152)
T 3kks_A 3 HLWQMDNTHW------NK-TIIWVAVETNSGLVEAQVIP--EETALQVALCILQLIQRYT---VLHLHSDNGPCFTAHRI 70 (152)
T ss_dssp CEEEEEEEEE------TT-EEEEEEEETTTCCEEEEEES--SSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHSHHH
T ss_pred cEEEEeeeee------CC-EEEEEEEEcCCCcEEEEEeC--CcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhHHHH
Confidence 4899999643 44 48888888877777887776 5678899999999999843 999987553322 357
Q ss_pred HHHhhhCCCcccccc
Q 019808 177 TKACKELDIKPIPSK 191 (335)
Q Consensus 177 ~kAc~~LgI~v~PSR 191 (335)
...|+.+||...-++
T Consensus 71 ~~~~~~~gi~~~~~~ 85 (152)
T 3kks_A 71 ENLCKYLGITKTTGI 85 (152)
T ss_dssp HHHHHHTTCEEEESS
T ss_pred HHHHHHcCCeecccC
Confidence 888999999887664
No 2
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=91.36 E-value=0.69 Score=38.30 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=62.5
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm 175 (335)
...|++||.. |+...+| +.|=++|.|.-..+.+...+. .-++..+.++|+.++.. ..|..|+.=|..-+ ..
T Consensus 13 ~~~~~~D~~~-~~~~~~g-~~y~~~~iD~~Sr~~~~~~~~--~~~~~~~~~~l~~~~~~---g~p~~i~sDnG~~f~s~~ 85 (200)
T 2x78_A 13 FDKFFIDYIG-PLPPSQG-YLYVLVVVDGMTGFTWLYPTK--APSTSATVKSLNVLTSI---AIPRVIHSDQGAAFTSST 85 (200)
T ss_dssp TSEEEEEEEC-CCSCBTT-BCEEEEEEETTTCCEEEEEES--SSCHHHHHHHHHHHTTT---CCCSEEEECSCHHHHSHH
T ss_pred ccEEEEEEeC-CCccCCC-CeEEEEEEeCCCCcEEEEECC--CCCHHHHHHHHHHHHHh---CCCcEEEecCCcceehHH
Confidence 4689999953 3333456 678888888877777877774 45667778889877765 45888887654322 34
Q ss_pred HHHHhhhCCCcccccc
Q 019808 176 ITKACKELDIKPIPSK 191 (335)
Q Consensus 176 I~kAc~~LgI~v~PSR 191 (335)
+...|+.+||...-++
T Consensus 86 ~~~~~~~~gi~~~~~~ 101 (200)
T 2x78_A 86 FAEWAKERGIHLEFST 101 (200)
T ss_dssp HHHHHHHHTCEEEECC
T ss_pred HHHHHHHcCceEeECC
Confidence 7888999999987765
No 3
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=90.29 E-value=1.1 Score=36.23 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=63.4
Q ss_pred eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHH-HH-HHH
Q 019808 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ-MQ-TII 176 (335)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~Q-M~-nmI 176 (335)
..|++||-.-+. .+|+ .|=++|.|.-..+.+.-.+. ..++..+.++|+.++...| .|..|+.=|.. .. ..+
T Consensus 12 ~~~~~D~~~~~~--~~g~-~yl~~~iD~~Sr~i~~~~~~--~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s~~~ 84 (162)
T 1cxq_A 12 QIWQTDFTLEPR--MAPR-SWLAVTVDTASSAIVVTQHG--RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTSKST 84 (162)
T ss_dssp CEEEEEEEECGG--GTTS-CEEEEEEETTTCCEEEEEES--SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHSHHH
T ss_pred CEEEeeeeeccc--CCCC-EEEEEEEEcCCCeEEEEECC--CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhhHHH
Confidence 589999986444 3454 77788888766677776666 5888999999999999854 48888764432 21 346
Q ss_pred HHHhhhCCCcccccc
Q 019808 177 TKACKELDIKPIPSK 191 (335)
Q Consensus 177 ~kAc~~LgI~v~PSR 191 (335)
...|+++||...-|+
T Consensus 85 ~~~~~~~gi~~~~~~ 99 (162)
T 1cxq_A 85 REWLARWGIAHTTGI 99 (162)
T ss_dssp HHHHHHHTCEEECCC
T ss_pred HHHHHHCCCeEeeCC
Confidence 788999999887665
No 4
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=89.64 E-value=1.2 Score=38.86 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=65.9
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm 175 (335)
...|++||-.-+. .+| +.|=++|.|.-+.+.+...+. ..++..+.++|+.++...| .|..|+.=+..-. ..
T Consensus 10 ~~~w~~D~~~~~~--~~g-~~yl~~~iD~~Sr~i~~~~~~--~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s~~ 82 (238)
T 1c0m_A 10 LQIWQTDFTLEPR--MAP-RSWLAVTVDTASSAIVVTQHG--RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTSKS 82 (238)
T ss_dssp TSEEEEEEEECGG--GCS-SCEEEEEEETTTCCEEEEEES--SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHSHH
T ss_pred CCEEEEeeccccc--cCC-CEEEEEEEECCCCCEEEEEcc--CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCccccHH
Confidence 3689999985443 234 588899999877788877776 6899999999999999864 4888887554322 34
Q ss_pred HHHHhhhCCCcccccc
Q 019808 176 ITKACKELDIKPIPSK 191 (335)
Q Consensus 176 I~kAc~~LgI~v~PSR 191 (335)
+...|+++||...-++
T Consensus 83 ~~~~~~~~gI~~~~~~ 98 (238)
T 1c0m_A 83 TREWLARWGIAHTTGI 98 (238)
T ss_dssp HHHHHHHHTCEEEECC
T ss_pred HHHHHHHCCCEEEecC
Confidence 6788999999876554
No 5
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=81.17 E-value=7.4 Score=32.75 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=59.3
Q ss_pred eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HHH
Q 019808 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII 176 (335)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nmI 176 (335)
..|++||-. .|++ +=|+|.|.-+.+.+...+++ .++..+..+|..++...| |..|..=|..-+ ..+
T Consensus 61 ~~w~~D~t~------~~~~-y~~~~iD~~Sr~~~~~~~~~--~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~~~ 128 (219)
T 3hph_A 61 DHWQVDYTH------YEDK-IILVWVETNSGLIYAERVKG--ETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAEST 128 (219)
T ss_dssp CEEEEEEEE------ETTE-EEEEEEETTTCCEEEEEESC--CCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSHHH
T ss_pred ceEEEEEec------CCCE-EEEEEEeCCCCcEEEEEeCC--CCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhHHH
Confidence 689999952 2444 77888887666667776664 467888889998888853 889987554433 367
Q ss_pred HHHhhhCCCcccccc
Q 019808 177 TKACKELDIKPIPSK 191 (335)
Q Consensus 177 ~kAc~~LgI~v~PSR 191 (335)
...|+.+||...-|+
T Consensus 129 ~~~~~~~gi~~~~s~ 143 (219)
T 3hph_A 129 QLLMKYLGIEHTTGI 143 (219)
T ss_dssp HHHHHHHTCEEEESC
T ss_pred HHHHHHcCCeEeECC
Confidence 889999999876654
No 6
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=81.06 E-value=1.5 Score=40.21 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=62.1
Q ss_pred ceeeecccccCccc--cCCCc--eeEEEEEeeCCCceEE-EecCCCCCCCHHHHHHHHHHHHhhcCCCCCC--eeee---
Q 019808 98 ITEWELDFCSRPIL--DIRGK--KIWELVVCDGSLSLQY-TKYFPNNVINSITLKEAIVAICDDLGVPIPE--KIRF--- 167 (335)
Q Consensus 98 m~iWELDFYSRPil--D~~GK--KlWELLICd~~~~F~y-~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~--~IRf--- 167 (335)
..+|+.|+..-++. +.+|+ +.|=++|.|.-+.... -..+++ -|+.-+..+|..|+...| .|. .|..
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~ivg~~~~~~--~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG 91 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVS--ENIDSIRLSFMDVVTRYG--IPEDFHITIDNT 91 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCCEEEEEEESS--CCHHHHHHHHHHHHHHHC--EESSCEEECCCT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCCcEEEEEEECC--CCHHHHHHHHHHHHHhcC--CCCCcEEEeeCc
Confidence 47999998766654 44586 6788888887433333 334442 388889999999999854 587 6654
Q ss_pred --ehHHHH--------------HHHHHHhhhCCCcccccc
Q 019808 168 --FRSQMQ--------------TIITKACKELDIKPIPSK 191 (335)
Q Consensus 168 --FR~QM~--------------nmI~kAc~~LgI~v~PSR 191 (335)
|++... .-+..+|.++||.+.-+|
T Consensus 92 ~~f~s~~~~g~~~~~~~~~~~~~~~~~~~~~lgI~~~~~~ 131 (327)
T 1bco_A 92 RGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTS 131 (327)
T ss_dssp TSTTTTTTSCCCTTTTBSCBCCCCHHHHHHHHTCEEECSS
T ss_pred hhhccccccccccccccccccccchhhHHHhcCeEEEecC
Confidence 665543 123578999999987766
No 7
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=79.58 E-value=5.9 Score=31.47 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=59.4
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm 175 (335)
...|+.||-.- .| .+=++|.|.-+.+.+...+++. ++..+..+|..++...| +..|+.=|..-+ ..
T Consensus 9 ~~~w~~D~t~~-----~g--~y~~~~iD~~sr~~~~~~~~~~--~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f~s~~ 76 (163)
T 3l3u_A 9 PGIWQLDCTHL-----EG--KVILVAVHVASGYIEAEVIPAE--TGQETAYFLLKLAGRWP---VKTVHTDNGSNFTSTT 76 (163)
T ss_dssp TTEEEEEEEEE-----TT--EEEEEEEETTTCCEEEEEESSC--CHHHHHHHHHHHHHHSC---CCEEEECCCGGGGSHH
T ss_pred CCEEEEEeccc-----CC--cEEEEEEecCCCcEEEEEeCCC--cHHHHHHHHHHHHHHcC---CcEEeecChHhhhhHH
Confidence 35899999642 35 3777888887778888888754 88889999999888843 467765442222 45
Q ss_pred HHHHhhhCCCcccccc
Q 019808 176 ITKACKELDIKPIPSK 191 (335)
Q Consensus 176 I~kAc~~LgI~v~PSR 191 (335)
+...|+++||...-|+
T Consensus 77 ~~~~~~~~gi~~~~~~ 92 (163)
T 3l3u_A 77 VKAACDWAGIKQEDGI 92 (163)
T ss_dssp HHHHHHHHTCEEEETC
T ss_pred HHHHHHHCCceeeeCC
Confidence 7888999999877664
No 8
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=68.46 E-value=7.3 Score=30.40 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=53.8
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeee-----ehHHH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRF-----FRSQM 172 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRf-----FR~QM 172 (335)
...|++||-.- +|| +=|.+.|.-..+.+...+++ -++..+..++.+++...| |..|+. |++.
T Consensus 9 ~~~w~~D~~~~-----~g~--~~l~~iD~~Sr~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~i~sDnG~~f~s~- 75 (164)
T 1c6v_A 9 LGTWQMDCTHL-----EGK--IVIVAVHVASGFIEAEVIPQ--ETGRQTALFLLKLAGRWP---ITHLHTDNGANFASQ- 75 (164)
T ss_dssp TTEEEEEEEEE-----TTE--EEEEEECTTSCCEEEEECSS--CSHHHHHHHHHHHHTTSC---CCEEECCCCSSTTSS-
T ss_pred CCEEEEeeccc-----CCE--EEEEEEEccCCEEEEEEcCC--CchHHHHHHHHHHHHhcC---CCEEEeCCchhhhhH-
Confidence 35899998643 565 56666676666777777764 577788888888877732 666643 4433
Q ss_pred HHHHHHHhhhCCCcccccc
Q 019808 173 QTIITKACKELDIKPIPSK 191 (335)
Q Consensus 173 ~nmI~kAc~~LgI~v~PSR 191 (335)
.+...|+.+||....++
T Consensus 76 --~~~~~~~~~gi~~~~~~ 92 (164)
T 1c6v_A 76 --EVKMVAWWAGIEHTFGV 92 (164)
T ss_dssp --HHHHHHHHHTCEEECC-
T ss_pred --HHHHHHHHcCCeEeECC
Confidence 45778899999887653
No 9
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=62.82 E-value=41 Score=27.52 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=55.8
Q ss_pred eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HHH
Q 019808 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII 176 (335)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nmI 176 (335)
..|++||-. + +| |. =|.+.|.-..+.+...+++ -++..+..++.+++...| +..|+.=|..-+ ..+
T Consensus 30 ~~w~~D~~~--~---~g-~~-~l~~vD~~Sr~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~i~sDnG~ef~s~~~ 97 (183)
T 3av9_A 30 GIWQLDCTH--L---EG-KV-ILVAVHVASGYIEAEVIPA--ETGQETAYFLLKLAGRWP---VKTVHTDNGSNFTSTTV 97 (183)
T ss_dssp TEEEEEEEE--E---TT-EE-EEEEEETTTTEEEEEEESS--CCHHHHHHHHHHHHHHSC---CCEEECSSHHHHHCHHH
T ss_pred CEEEEeccc--c---CC-cE-EEEEEECCCCCEEEEEeCC--ccchHHHHHHHHHHHHcC---CcEEEecCchhcchHHH
Confidence 589999973 2 55 34 3555577667778777765 477888888888887732 466665443322 357
Q ss_pred HHHhhhCCCcccccc
Q 019808 177 TKACKELDIKPIPSK 191 (335)
Q Consensus 177 ~kAc~~LgI~v~PSR 191 (335)
...|+++||...-++
T Consensus 98 ~~~~~~~gI~~~~s~ 112 (183)
T 3av9_A 98 KAACWWAGIKQEDGI 112 (183)
T ss_dssp HHHHHHHTCEEECCC
T ss_pred HHHHHHCCCEEeecC
Confidence 889999999987664
No 10
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=62.02 E-value=11 Score=36.50 Aligned_cols=90 Identities=11% Similarity=-0.100 Sum_probs=53.4
Q ss_pred ceeeecccccCcc--ccCCCce--eEEEEEeeC-CCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCee-----ee
Q 019808 98 ITEWELDFCSRPI--LDIRGKK--IWELVVCDG-SLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKI-----RF 167 (335)
Q Consensus 98 m~iWELDFYSRPi--lD~~GKK--lWELLICd~-~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~I-----Rf 167 (335)
+.+||+|+..-.+ .|.+|+. .|=.++.|. ++..---..+++ -||.-...+|..++...|.+.+..| .-
T Consensus 187 ~e~~~~D~t~~dv~~~~~~g~~~Rp~l~~~iD~~SR~i~g~~~~~~--~~~~~~~~~l~~a~~~~g~p~~~~i~~Dng~~ 264 (529)
T 4fcy_A 187 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVS--ENIDSIRLSFMDVVTRYGIPEDFHITIDNTRG 264 (529)
T ss_dssp TTEEEEEEEECCSCEECTTSCEECCEEEEEEETTTCCEEEEEEESS--CCHHHHHHHHHHHHHHHCEESSEEEECCCC--
T ss_pred CCEEEeCeEEecceeECCCCCeeeEEEEEEEEccCCcEEEEEecCC--CCHHHHHHHHHHHHHHhCCCCeeEEEeeCchh
Confidence 4689999876554 4667773 466666666 554443344443 4777888899999987654333223 35
Q ss_pred ehHHHHH--------------HHHHHhhhCCCcccc
Q 019808 168 FRSQMQT--------------IITKACKELDIKPIP 189 (335)
Q Consensus 168 FR~QM~n--------------mI~kAc~~LgI~v~P 189 (335)
|++.+.+ -++.+|..|||.+..
T Consensus 265 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~lGI~~~~ 300 (529)
T 4fcy_A 265 AANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHW 300 (529)
T ss_dssp ------CCCCSCTTSSCCCCCCHHHHHHHTTEEEEC
T ss_pred hcchhhccchhhhccccccchhHHHHHHHcCCeEEe
Confidence 7776542 246789999998654
No 11
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=58.33 E-value=46 Score=30.29 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=60.6
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm 175 (335)
...|.+||.- |+...+| +.+=|+|.|.-..|.+...+.. .++.-...+| .++... ..|..|+.=|..-+ ..
T Consensus 125 ~~~~~~D~~~-~~~~~~g-~~y~l~~vD~~sr~~~~~~~~~--~~~~~~~~~l-~~~~~~--g~p~~i~sDnG~~f~s~~ 197 (395)
T 3oym_A 125 FDKFFIDYIG-PLPPSQG-YLYVLVVVDGMTGFTWLYPTKA--PSTSATVKSL-NVLTSI--AIPKVIHSDQGAAFTSST 197 (395)
T ss_dssp TSEEEEEEEC-CCSCBTT-BCEEEEEEETTTCCEEEEEESS--SCHHHHHHHH-HHHTTT--CCCSEEEECSCHHHHSHH
T ss_pred ceEEEEEEec-ccCCCCC-ccEEEEEEecCCceEEEEEecC--CcHHHHHHHh-hHhhcc--CCceEEEeCCCCceecHH
Confidence 5799999865 3333444 6788888887777777777765 5666677788 556553 45898887554322 46
Q ss_pred HHHHhhhCCCcccccc
Q 019808 176 ITKACKELDIKPIPSK 191 (335)
Q Consensus 176 I~kAc~~LgI~v~PSR 191 (335)
++..|+.+||...-|+
T Consensus 198 ~~~~~~~~gi~~~~s~ 213 (395)
T 3oym_A 198 FAEWAKERGIHLEFST 213 (395)
T ss_dssp HHHHHHHTTCEEEECC
T ss_pred HHHHHHHcCCceeecC
Confidence 7888999999876554
No 12
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=48.24 E-value=38 Score=28.25 Aligned_cols=82 Identities=6% Similarity=0.023 Sum_probs=56.6
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm 175 (335)
...|++||- ++ |+ .+=|+|.|.-..+.+...+++ .++.-+..+|..++...| +..|+.=|..-+ ..
T Consensus 59 ~~~w~~D~~--~~----~~-~y~l~~vD~~sr~~~~~~~~~--~~~~~~~~~l~~~~~~~g---~~~i~sDnG~~F~s~~ 126 (210)
T 3f9k_A 59 LGTWQMDCT--HL----EG-KIIIVAVHVASGFIEAEVIPQ--ESGRQTALFLLKLASRWP---ITHLHTDNGANFTSQE 126 (210)
T ss_dssp TTEEEEEEE--EE----TT-EEEEEEEETTTTEEEEEEESS--CCHHHHHHHHHHHHTTSC---CSEEEECCCTTTSSHH
T ss_pred CCeEeEeec--cc----CC-eEEEEEEEcCCCcEEEEEeCC--cchHHHHHHHHHHHHHcC---CCEEEeCCCchhhHHH
Confidence 358999982 22 33 466777887666888777776 588888999998888753 334765443222 35
Q ss_pred HHHHhhhCCCcccccc
Q 019808 176 ITKACKELDIKPIPSK 191 (335)
Q Consensus 176 I~kAc~~LgI~v~PSR 191 (335)
++..|+.+||...-|+
T Consensus 127 ~~~~~~~~gi~~~~s~ 142 (210)
T 3f9k_A 127 VKMVAWWIGIEQSFGV 142 (210)
T ss_dssp HHHHHHHHTCEEEESS
T ss_pred HHHHHHHCCCceeeCC
Confidence 6788999999877553
No 13
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=46.55 E-value=58 Score=26.93 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=52.6
Q ss_pred eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHH--HHHH
Q 019808 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQM--QTII 176 (335)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM--~nmI 176 (335)
..|++||-.- |++ +=|++.|.-+.+.+...+++. ++.-+..++..++... + +..|+.=|..- ...+
T Consensus 59 ~~w~~D~~~~------~~~-~~l~~vD~~Sr~~~~~~~~~~--~~~~~~~~~~~~~~~~-~--~~~i~sDnG~~f~s~~~ 126 (212)
T 1k6y_A 59 GIWQLDCTHL------EGK-VILVAVHVASGYIEAEVIPAE--TGQETAYFLLKLAGRW-P--VKTVHTDNGSNFTSTTV 126 (212)
T ss_dssp TEEEEEEEEE------TTE-EEEEEEETTTTEEEEEEESSC--CHHHHHHHHHHHHHHS-C--CCEEECCCSTTTTSHHH
T ss_pred CeeeEEEecC------CCe-EEEEEEEccCCcEEEEEecCc--chHHHHHHHHHHHHhc-C--CeEEEcCCCcccccHHH
Confidence 5899999642 554 556666777778888777765 5556667777777663 2 46665433211 2346
Q ss_pred HHHhhhCCCcccccc
Q 019808 177 TKACKELDIKPIPSK 191 (335)
Q Consensus 177 ~kAc~~LgI~v~PSR 191 (335)
...|+++||...-|+
T Consensus 127 ~~~~~~~gi~~~~s~ 141 (212)
T 1k6y_A 127 KAACDWAGIKQEDGI 141 (212)
T ss_dssp HHHHHHHTCEECCC-
T ss_pred HHHHHHCCCeeeECC
Confidence 788999999887664
No 14
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=41.07 E-value=1e+02 Score=26.28 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=53.0
Q ss_pred ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (335)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm 175 (335)
...|++||-.- +| | +=|++.|.-+.+.+...++.... ..+..++..++... .|..|+.=|..-+ ..
T Consensus 9 ~~~w~~D~t~~-----~g-~-~~l~~vD~~Sr~i~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~i~sDnG~eF~s~~ 76 (239)
T 1ex4_A 9 PGIWQLDCTHL-----EG-K-VILVAVHVASGYIEAEVIPAETG--QETAYFLLKLAGRW---PVKTIHTDNGSNFTGAT 76 (239)
T ss_dssp GGEEEEEEEEE-----TT-E-EEEEEECTTTCCEEEECCSSSST--THHHHHHHHHHHHS---CCCEEEECCCHHHHCHH
T ss_pred CCEEEEecccc-----CC-e-EEEEEEECCCCeEEEEEeCCCCH--HHHHHHHHHHHHhc---CCcEEEecCcHHHHHHH
Confidence 35899999532 34 3 34555587777888888886543 34555666666662 2677766443322 45
Q ss_pred HHHHhhhCCCcccccc
Q 019808 176 ITKACKELDIKPIPSK 191 (335)
Q Consensus 176 I~kAc~~LgI~v~PSR 191 (335)
+...|+.+||...-|+
T Consensus 77 ~~~~~~~~gI~~~~s~ 92 (239)
T 1ex4_A 77 VRAACDWAGIKQEDGI 92 (239)
T ss_dssp HHHHHTTTTCEECCCC
T ss_pred HHHHHHHCCCeEEECC
Confidence 7889999999876553
No 15
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=31.85 E-value=17 Score=35.38 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=20.7
Q ss_pred HHHcCC-cEEEEEecCCCCCceeeEEee
Q 019808 301 KKACGG-LHFLAIQEELDSEDCVGFWLL 327 (335)
Q Consensus 301 Kq~a~G-LHFLaVQ~dp~~etfaGFWLL 327 (335)
|.---| +|||-+|+...+-.-.|||+-
T Consensus 34 K~IPpG~~Hfih~s~~e~~s~R~Gfw~~ 61 (363)
T 3sbt_B 34 KDIPIGHVHVIHFQHADNSSMRYGYWFD 61 (363)
T ss_dssp EEECTTSCEEEEEEETTEEEEEEEEEEC
T ss_pred ecCCCCCCEEEEEecCCCCCcceEEEEE
Confidence 444579 999999998554456899975
No 16
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=24.49 E-value=36 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.785 Sum_probs=17.5
Q ss_pred HHHHhhhCCCccccccchHHHHHHHHH
Q 019808 176 ITKACKELDIKPIPSKRCLSLLLWLEE 202 (335)
Q Consensus 176 I~kAc~~LgI~v~PSRRT~aL~~WL~E 202 (335)
+..+|+..|| |||+| +++||.+
T Consensus 31 l~~i~~~~~~---ps~~T--~~~W~~~ 52 (140)
T 4dyq_A 31 LLKVCKRPGM---PDKST--VFRWLAK 52 (140)
T ss_dssp HHHHHTSTTC---CCHHH--HHHHHHH
T ss_pred HHHHHhcCCC---CCHHH--HHHHHHc
Confidence 5778999998 78877 5689876
No 17
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=22.95 E-value=1.2e+02 Score=30.57 Aligned_cols=48 Identities=8% Similarity=0.183 Sum_probs=39.3
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHH--------------HHHHHHHHhhhCCCcc
Q 019808 134 KYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ--------------MQTIITKACKELDIKP 187 (335)
Q Consensus 134 ~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~Q--------------M~nmI~kAc~~LgI~v 187 (335)
.+|+ .|..|++.+|+.|-+. ..|-.|.+=+.| +..|+..++++.++++
T Consensus 25 av~~---~n~e~i~Ail~aAee~---~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv 86 (450)
T 3txv_A 25 SICS---AHPLVIEAAMLRAHRE---KAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPR 86 (450)
T ss_dssp EECC---CCHHHHHHHHHHHHHS---CSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCG
T ss_pred EeCc---CCHHHHHHHHHHHHHh---CCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCc
Confidence 4454 7899999999988877 569999988865 4678999999999996
No 18
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=20.43 E-value=1.2e+02 Score=25.98 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=28.3
Q ss_pred CCCeeeee-----hHHHHHHHHHHhhhCCCccccccchHHHHHHHHH
Q 019808 161 IPEKIRFF-----RSQMQTIITKACKELDIKPIPSKRCLSLLLWLEE 202 (335)
Q Consensus 161 ~P~~IRfF-----R~QM~nmI~kAc~~LgI~v~PSRRT~aL~~WL~E 202 (335)
.|-.|.+. +.++-.+|+..++++||++.-.--..+ .|++.
T Consensus 127 ~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~~~~--~~~~~ 171 (259)
T 3pam_A 127 LPFQFEIMTQSLEEEKVALAFQSNLSRLGIHAEIRTVDDS--QYQNR 171 (259)
T ss_dssp CBCEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEECCHH--HHHHH
T ss_pred cEEEEEEEeCCchHHHHHHHHHHHHHHcCCEEEEEecCHH--HHHHH
Confidence 45455543 567888999999999999988766554 34443
Done!