BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019809
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 32 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 91
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV+ +
Sbjct: 172 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 231
Query: 92 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 151
G E+ I Y++ ++ R+K L++QY F C C RC
Sbjct: 232 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 268
Query: 152 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 211
+D D T + +E +KKI E+ K L C Q ++S+
Sbjct: 269 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 319
Query: 212 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269
E+L +N+ Q + + + + L +EAL Y T+ Y+ +P HP+
Sbjct: 320 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 370
Query: 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306
G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 371 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 407
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 32 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 91
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV+ +
Sbjct: 170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 229
Query: 92 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 151
G E+ I Y++ ++ R+K L++QY F C C RC
Sbjct: 230 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 266
Query: 152 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 211
+D D T + +E +KKI E+ K L C Q ++S+
Sbjct: 267 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 317
Query: 212 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269
E+L +N+ Q + + + + L +EAL Y T+ Y+ +P HP+
Sbjct: 318 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 368
Query: 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306
G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 369 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 32 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 91
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV+ +
Sbjct: 171 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 230
Query: 92 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 151
G E+ I Y++ ++ R+K L++QY F C C RC
Sbjct: 231 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 267
Query: 152 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 211
+D D T + +E +KKI E+ K L C Q ++S+
Sbjct: 268 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 318
Query: 212 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269
E+L +N+ Q + + + + L +EAL Y T+ Y+ +P HP+
Sbjct: 319 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369
Query: 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306
G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 32 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 91
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV+ +
Sbjct: 206 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 265
Query: 92 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 151
G E+ I Y++ ++ R+K L++QY F C C RC
Sbjct: 266 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 302
Query: 152 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 211
+D D T + +E +KKI E+ K L C Q ++S+
Sbjct: 303 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 353
Query: 212 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269
E+L +N+ Q + + + + L +EAL Y T+ Y+ +P HP+
Sbjct: 354 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 404
Query: 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306
G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 405 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 441
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 32 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 91
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV+ +
Sbjct: 170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 229
Query: 92 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 151
G E+ I Y++ ++ R+K L++QY F C C RC
Sbjct: 230 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 266
Query: 152 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 211
+D D T + +E +KKI E+ K L C Q ++S+
Sbjct: 267 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 317
Query: 212 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269
E+L +N+ Q + + + + L +EAL Y T+ Y+ +P HP+
Sbjct: 318 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 368
Query: 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306
G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 369 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 29/317 (9%)
Query: 5 DEKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVI 63
+EK+ L+ + IA L + + E N+ + F+++ CN TI + EL LG+ ++P +
Sbjct: 143 NEKKDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDV 202
Query: 64 SIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTC 123
+++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y FTC
Sbjct: 203 ALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
Query: 124 TCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKI 183
C C KD + +R D +VR + +
Sbjct: 263 ECQECTT------------------KDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEE 304
Query: 184 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE 243
+ L C QE +S+ ++ +V ++ + + + + ++
Sbjct: 305 FRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYMQ 354
Query: 244 DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303
DW+ AL Y Q I Y + YP + + + G+L L K++ +A+ I+ +
Sbjct: 355 DWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEV 414
Query: 304 THGTNSPFMKELILKLE 320
HG + P++ E+ ++E
Sbjct: 415 AHGKDHPYISEIKQEIE 431
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 43/277 (15%)
Query: 32 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 91
++ E F+K+ CN+ TICN+E + +G GLYP IS++NHSC PN +VF G ++RAV+ +
Sbjct: 171 DLFEAFAKVICNSFTICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 230
Query: 92 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 151
G E+ I Y++ ++ R+K L++QY F C C RC
Sbjct: 231 EVGEELTICYLDXLXTSEERRKQLRDQYCFECDCFRC----------------------- 267
Query: 152 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 211
+D D T + +E +KKI E+ K L C Q ++S+
Sbjct: 268 -----QTQDKDADXLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAXC---QAIISSNS 318
Query: 212 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269
E+L +N+ Q + + + L +EAL Y T Y+ +P HP+
Sbjct: 319 --ERLP-------DINIYQLKVLDCAXDACINLGLLEEALFYGTRTXEPYRIFFPGSHPV 369
Query: 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306
G+Q GKL+ G A K++ A +I R+THG
Sbjct: 370 RGVQVXKVGKLQLHQGXFPQAXKNLRLAFDIXRVTHG 406
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 147/319 (46%), Gaps = 33/319 (10%)
Query: 5 DEKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYP 61
+EK+ L+ + IA L L++P+ S + F+++ CN TI + EL LG+ ++P
Sbjct: 143 NEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSAIFP 200
Query: 62 VISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLF 121
++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y F
Sbjct: 201 DVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFF 260
Query: 122 TCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIK 181
TC C C +D D ++ E I+
Sbjct: 261 TCECRECT----------------------------TKDKDKAKVEVRKLSSPPQAEAIR 292
Query: 182 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME 241
+ + ++ + E++ ++ ++ ++ +V ++ + + + +
Sbjct: 293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY 352
Query: 242 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301
++DW+ AL Y Q I Y + YP + + + G+L L + K++ +A+ I+
Sbjct: 353 MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412
Query: 302 RITHGTNSPFMKELILKLE 320
+ HG + P++ E+ ++E
Sbjct: 413 EVAHGKDHPYISEIKQEIE 431
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 149/319 (46%), Gaps = 33/319 (10%)
Query: 5 DEKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYP 61
+EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 143 NEKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFP 200
Query: 62 VISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLF 121
++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y F
Sbjct: 201 DVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
Query: 122 TCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIK 181
TC C C ++ A +E R D +RD +VR +
Sbjct: 261 TCECQECTTKD-----KDKAKVE-IRKLSDPPKAEAIRD------------MVRYARNVI 302
Query: 182 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME 241
+ + L C QE +S+ ++ +V ++ + + + +
Sbjct: 303 EEFRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLY 352
Query: 242 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301
++DW+ AL Y Q I Y + YP + + + G+L L K++ +A+ I+
Sbjct: 353 MQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIM 412
Query: 302 RITHGTNSPFMKELILKLE 320
+ HG + P++ E+ ++E
Sbjct: 413 EVAHGKDHPYISEIKQEIE 431
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 33/319 (10%)
Query: 5 DEKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYP 61
+EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 143 NEKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFP 200
Query: 62 VISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLF 121
++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y F
Sbjct: 201 DVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
Query: 122 TCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIK 181
TC C C KD + +R D +VR +
Sbjct: 261 TCECQECTT------------------KDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVI 302
Query: 182 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME 241
+ + L C QE +S+ ++ +V ++ + + + +
Sbjct: 303 EEFRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLY 352
Query: 242 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301
++DW+ AL Y Q I Y + YP + + + G+L L K++ +A+ I+
Sbjct: 353 MQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIM 412
Query: 302 RITHGTNSPFMKELILKLE 320
+ HG + P++ E+ ++E
Sbjct: 413 EVAHGKDHPYISEIKQEIE 431
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 48/316 (15%)
Query: 19 VNLILQ-WP----EISINEIAENFSKLACNAHTICNSE-LRPLGTGLYPVISIINHSCLP 72
V+ LQ WP + S+ I+ F + CN T+ + L+ +G G++P + ++NH C P
Sbjct: 151 VDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWP 210
Query: 73 NAVLVFE-GRLAVVRAVQH------------VPKGAEVLISYIETAGSTMTRQKALKEQY 119
N ++F G V+++ H + +G E+ +SYI+ + R++ LK+QY
Sbjct: 211 NCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQY 270
Query: 120 LFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEE 179
F C+C C K G DD+ FL D K S+E
Sbjct: 271 YFDCSCEHCQK-GLKDDL------------------FLAAKEDPKP----------SQEV 301
Query: 180 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL 239
+K++ +K S G + EVV + + Q+ ++ ++ +++ ++L
Sbjct: 302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL 361
Query: 240 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299
L+ ++EA Y + + Y ++Y + LG+ G W G E + +A
Sbjct: 362 SYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421
Query: 300 ILRITHGTNSPFMKEL 315
IL +THG + P K+L
Sbjct: 422 ILLVTHGPSHPITKDL 437
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 64 SIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEVLISY 101
+ INH C PN V GR A V+A++ + G E+ Y
Sbjct: 207 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYY 245
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 59 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 118
+ P I+NH NA L + + A Q +PKG E+ +Y + A + E
Sbjct: 219 MVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEP 278
Query: 119 Y 119
Y
Sbjct: 279 Y 279
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 6 EKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISI 65
E+ + L A++ + N L+ I +N E KL N I S G Y +
Sbjct: 171 ERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISES-----GINTYAQVRE 225
Query: 66 INHSC----LPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQY-- 119
++H + +A++ + A VR VL+ + G +TR + K Y
Sbjct: 226 LSHFANGFLIGSALMAHDDLHAAVR---------RVLLGENKVCG--LTRGQDAKAAYDA 274
Query: 120 -------LFTCTCPRCIKLGQFDDIQESAILE 144
+F T PRC+ + Q ++ +A L+
Sbjct: 275 GAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQ 306
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 64 SIINHSCLPNAVLV-FEGRLAVVRAVQHVPKGAEVLISYIE 103
+ INH C PN V +G A V+ ++ + G EV Y E
Sbjct: 178 AFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGE 218
>pdb|2C82|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2C82|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
Length = 413
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 19 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 71
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 271 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 317
>pdb|2JCV|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCV|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JD1|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD1|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD2|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|2JD2|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|3RAS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|3RAS|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|2Y1C|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1C|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1D|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1D|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1E|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1E|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1F|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1F|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1G|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|2Y1G|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|4A03|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4A03|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4AIC|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
pdb|4AIC|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
Length = 398
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 19 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 71
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 280 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 326
>pdb|2JCX|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCX|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCY|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JCY|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JD0|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
pdb|2JD0|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
Length = 398
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 19 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 71
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 280 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 326
>pdb|3VMN|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
pdb|3VMO|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With Isomaltotriose
pdb|3VMP|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With 4,5-Epoxypentyl Alpha-D-Glucopyranoside
Length = 643
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 11 LYAQIANLVNLILQWPEISINEI-AENFSKLACNAHTICNSELRPLGT---GLYPVISII 66
+YA+ N + L +++N++ EN SKLA + + +EL P GT G P S
Sbjct: 315 VYAEFLNKMKEKLPQYYLTLNDVNGENISKLANSKQDVIYNELWPFGTSALGNRPQESYG 374
Query: 67 NHSCLPNAVLVFEGRLAVVRAVQHVPK 93
+ + V G+ +V A PK
Sbjct: 375 DLKARVDQVRQATGKSLIVGAYMEEPK 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,248,051
Number of Sequences: 62578
Number of extensions: 359942
Number of successful extensions: 912
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 31
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)