Query 019809
Match_columns 335
No_of_seqs 234 out of 2300
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.9 1.2E-20 2.7E-25 184.7 23.7 286 29-328 168-473 (482)
2 KOG1840 Kinesin light chain [C 99.5 1.9E-12 4.2E-17 125.5 17.2 136 193-328 247-382 (508)
3 KOG1840 Kinesin light chain [C 99.5 2.6E-12 5.7E-17 124.6 17.7 134 190-323 202-335 (508)
4 PF00856 SET: SET domain; Int 99.4 3.8E-13 8.2E-18 111.4 9.2 66 37-102 93-162 (162)
5 PF13424 TPR_12: Tetratricopep 99.2 4.5E-11 9.7E-16 87.5 9.0 78 225-303 1-78 (78)
6 smart00317 SET SET (Su(var)3-9 99.1 4.4E-11 9.5E-16 93.9 3.9 45 57-101 68-116 (116)
7 KOG2589 Histone tail methylase 98.9 8.5E-10 1.8E-14 99.8 4.9 84 38-132 172-257 (453)
8 CHL00033 ycf3 photosystem I as 98.7 3.6E-07 7.8E-12 77.0 13.5 127 187-319 35-161 (168)
9 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.2E-06 2.6E-11 68.4 12.2 115 189-318 4-118 (119)
10 KOG0553 TPR repeat-containing 98.4 5.8E-06 1.3E-10 74.1 14.0 117 186-323 80-196 (304)
11 PF13374 TPR_10: Tetratricopep 98.4 4.1E-07 8.8E-12 57.6 4.4 42 270-311 1-42 (42)
12 PF13424 TPR_12: Tetratricopep 98.4 7.5E-07 1.6E-11 64.8 6.0 63 267-330 1-63 (78)
13 PRK15359 type III secretion sy 98.4 2E-05 4.4E-10 64.6 14.9 115 190-325 27-141 (144)
14 PRK15363 pathogenicity island 98.4 4.2E-05 9.1E-10 63.0 16.3 122 185-327 33-154 (157)
15 PRK02603 photosystem I assembl 98.3 1.2E-05 2.6E-10 68.0 12.0 130 187-322 35-164 (172)
16 KOG1839 Uncharacterized protei 98.3 3.6E-06 7.8E-11 88.0 9.6 125 197-322 942-1066(1236)
17 PLN03088 SGT1, suppressor of 98.2 4.1E-05 8.9E-10 72.4 14.8 111 190-321 5-115 (356)
18 PRK10803 tol-pal system protei 98.2 4.4E-05 9.5E-10 69.0 14.2 115 191-320 146-261 (263)
19 PF13374 TPR_10: Tetratricopep 98.1 4.6E-06 9.9E-11 52.7 4.7 42 228-269 1-42 (42)
20 TIGR02552 LcrH_SycD type III s 98.1 0.00013 2.8E-09 58.6 14.1 112 190-322 20-131 (135)
21 KOG4442 Clathrin coat binding 98.1 3.5E-06 7.5E-11 82.7 4.4 57 49-105 179-240 (729)
22 PF09986 DUF2225: Uncharacteri 98.1 0.00017 3.6E-09 63.2 14.3 135 164-300 47-194 (214)
23 COG2940 Proteins containing SE 98.1 2.1E-06 4.6E-11 84.4 2.7 69 62-130 405-477 (480)
24 KOG4626 O-linked N-acetylgluco 98.0 4.8E-05 1E-09 74.2 11.0 94 191-300 324-417 (966)
25 PRK10866 outer membrane biogen 98.0 0.00046 1E-08 61.7 15.9 127 189-327 34-175 (243)
26 TIGR03302 OM_YfiO outer membra 98.0 0.00018 3.9E-09 63.6 13.1 115 188-317 34-156 (235)
27 PF13512 TPR_18: Tetratricopep 97.9 0.00026 5.6E-09 57.3 12.2 88 189-286 12-99 (142)
28 PF13525 YfiO: Outer membrane 97.9 0.00048 1E-08 59.9 14.8 131 187-327 5-141 (203)
29 PF13414 TPR_11: TPR repeat; P 97.9 0.00011 2.4E-09 51.7 8.5 63 230-300 4-67 (69)
30 KOG4626 O-linked N-acetylgluco 97.9 0.00013 2.9E-09 71.3 11.1 114 186-323 353-466 (966)
31 KOG1080 Histone H3 (Lys4) meth 97.8 1.2E-05 2.6E-10 83.6 3.9 43 63-105 940-986 (1005)
32 PF12895 Apc3: Anaphase-promot 97.8 9.6E-05 2.1E-09 54.5 7.8 83 200-297 2-84 (84)
33 PF09976 TPR_21: Tetratricopep 97.8 0.00047 1E-08 56.4 12.1 93 192-298 53-145 (145)
34 PF14938 SNAP: Soluble NSF att 97.8 0.00064 1.4E-08 62.2 14.0 130 193-329 41-171 (282)
35 PF13432 TPR_16: Tetratricopep 97.7 0.00025 5.5E-09 49.3 7.9 59 234-300 2-60 (65)
36 TIGR02521 type_IV_pilW type IV 97.7 0.0011 2.5E-08 57.0 13.4 92 192-299 36-127 (234)
37 PF09976 TPR_21: Tetratricopep 97.7 0.0038 8.3E-08 51.0 15.7 100 187-296 11-110 (145)
38 PF12688 TPR_5: Tetratrico pep 97.6 0.0024 5.2E-08 50.6 12.6 100 190-299 4-103 (120)
39 COG3063 PilF Tfp pilus assembl 97.5 0.0012 2.7E-08 57.4 11.1 96 188-299 36-131 (250)
40 PF13371 TPR_9: Tetratricopept 97.5 0.00042 9.1E-09 49.3 6.9 71 236-319 2-72 (73)
41 COG1729 Uncharacterized protei 97.5 0.001 2.3E-08 59.3 10.7 100 190-299 144-243 (262)
42 cd00189 TPR Tetratricopeptide 97.5 0.0013 2.9E-08 47.2 9.8 92 193-300 6-97 (100)
43 KOG0543 FKBP-type peptidyl-pro 97.5 0.0037 8E-08 58.6 14.2 107 186-300 207-320 (397)
44 TIGR03302 OM_YfiO outer membra 97.5 0.0053 1.2E-07 54.1 14.8 124 191-329 74-219 (235)
45 TIGR02521 type_IV_pilW type IV 97.4 0.0056 1.2E-07 52.6 14.5 93 194-300 106-198 (234)
46 CHL00033 ycf3 photosystem I as 97.4 0.00092 2E-08 56.1 9.1 67 229-300 35-101 (168)
47 PRK11189 lipoprotein NlpI; Pro 97.4 0.0021 4.5E-08 59.3 12.0 101 189-310 66-166 (296)
48 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0016 3.5E-08 50.5 9.4 85 230-324 3-87 (119)
49 PF03704 BTAD: Bacterial trans 97.3 0.011 2.5E-07 48.0 14.2 123 189-319 8-145 (146)
50 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0012 2.7E-08 63.0 9.2 72 224-300 70-141 (453)
51 TIGR00990 3a0801s09 mitochondr 97.3 0.0039 8.4E-08 63.4 13.4 87 198-300 342-428 (615)
52 COG4105 ComL DNA uptake lipopr 97.3 0.015 3.3E-07 51.5 15.1 128 188-327 35-167 (254)
53 KOG1839 Uncharacterized protei 97.3 0.0034 7.4E-08 66.4 12.7 116 202-317 1030-1145(1236)
54 TIGR00990 3a0801s09 mitochondr 97.2 0.0054 1.2E-07 62.4 13.7 92 192-299 370-461 (615)
55 PF14938 SNAP: Soluble NSF att 97.2 0.0063 1.4E-07 55.7 12.4 104 193-301 80-185 (282)
56 PRK02603 photosystem I assembl 97.2 0.0052 1.1E-07 51.7 11.0 71 225-300 31-101 (172)
57 PRK11788 tetratricopeptide rep 97.2 0.01 2.2E-07 56.4 14.2 95 194-300 114-209 (389)
58 PRK10370 formate-dependent nit 97.2 0.015 3.2E-07 50.3 13.9 110 193-323 79-191 (198)
59 PF14559 TPR_19: Tetratricopep 97.1 0.0013 2.9E-08 45.9 5.6 67 240-319 2-68 (68)
60 PRK11788 tetratricopeptide rep 97.1 0.011 2.4E-07 56.1 13.7 95 193-300 41-136 (389)
61 PRK15174 Vi polysaccharide exp 97.1 0.012 2.7E-07 60.3 14.8 117 191-326 288-404 (656)
62 KOG4234 TPR repeat-containing 97.1 0.016 3.5E-07 49.5 12.7 107 182-300 90-197 (271)
63 KOG1082 Histone H3 (Lys9) meth 97.1 0.00035 7.6E-09 66.3 2.8 52 55-106 264-324 (364)
64 PRK09782 bacteriophage N4 rece 97.1 0.011 2.4E-07 63.0 14.1 92 194-301 616-707 (987)
65 PRK15179 Vi polysaccharide bio 97.0 0.013 2.7E-07 60.2 14.0 93 193-301 126-218 (694)
66 PRK15331 chaperone protein Sic 97.0 0.033 7.2E-07 46.3 13.5 116 185-322 35-151 (165)
67 COG2956 Predicted N-acetylgluc 97.0 0.025 5.4E-07 51.8 13.7 134 185-329 105-265 (389)
68 PRK15179 Vi polysaccharide bio 97.0 0.011 2.4E-07 60.7 12.8 93 191-299 90-182 (694)
69 KOG1337 N-methyltransferase [G 96.8 0.0019 4.1E-08 63.5 5.9 89 28-122 197-291 (472)
70 TIGR02917 PEP_TPR_lipo putativ 96.8 0.017 3.6E-07 60.1 13.3 103 190-300 25-154 (899)
71 KOG0550 Molecular chaperone (D 96.8 0.029 6.4E-07 52.8 12.5 123 186-323 248-371 (486)
72 PRK15174 Vi polysaccharide exp 96.7 0.025 5.3E-07 58.1 13.2 92 193-300 252-347 (656)
73 PRK04841 transcriptional regul 96.7 0.032 6.9E-07 59.3 14.6 106 197-304 501-606 (903)
74 KOG1083 Putative transcription 96.7 0.0013 2.9E-08 67.6 3.3 49 54-102 1235-1294(1306)
75 cd05804 StaR_like StaR_like; a 96.6 0.019 4.2E-07 53.7 10.7 93 194-299 121-214 (355)
76 KOG1141 Predicted histone meth 96.6 0.0011 2.4E-08 66.5 2.3 56 63-126 1190-1253(1262)
77 PF13414 TPR_11: TPR repeat; P 96.6 0.024 5.1E-07 39.6 8.7 61 190-258 6-67 (69)
78 PF13432 TPR_16: Tetratricopep 96.6 0.012 2.5E-07 40.7 6.8 58 193-258 3-60 (65)
79 PRK10803 tol-pal system protei 96.6 0.019 4.2E-07 51.9 9.9 86 233-328 146-232 (263)
80 PF12688 TPR_5: Tetratrico pep 96.5 0.04 8.6E-07 43.6 10.4 64 231-299 3-66 (120)
81 KOG1173 Anaphase-promoting com 96.5 0.052 1.1E-06 53.0 12.8 104 200-317 427-530 (611)
82 PRK12370 invasion protein regu 96.5 0.014 3E-07 58.7 9.4 83 202-300 319-401 (553)
83 KOG1130 Predicted G-alpha GTPa 96.5 0.13 2.8E-06 48.7 14.6 126 200-331 248-373 (639)
84 PRK12370 invasion protein regu 96.4 0.067 1.5E-06 53.8 13.6 90 194-299 345-434 (553)
85 PRK11447 cellulose synthase su 96.3 0.044 9.6E-07 60.0 12.8 97 191-300 307-414 (1157)
86 KOG1085 Predicted methyltransf 96.2 0.0029 6.3E-08 56.3 2.5 44 63-106 334-381 (392)
87 PRK09782 bacteriophage N4 rece 96.2 0.045 9.8E-07 58.5 11.8 92 200-313 589-680 (987)
88 PF13176 TPR_7: Tetratricopept 96.1 0.01 2.3E-07 36.1 4.0 30 273-302 1-30 (36)
89 TIGR02917 PEP_TPR_lipo putativ 96.1 0.094 2E-06 54.6 13.6 61 230-299 771-831 (899)
90 PRK04841 transcriptional regul 96.1 0.19 4.2E-06 53.4 15.9 110 197-312 462-572 (903)
91 PRK11447 cellulose synthase su 96.1 0.051 1.1E-06 59.5 11.6 95 194-300 276-380 (1157)
92 PF00515 TPR_1: Tetratricopept 96.0 0.015 3.3E-07 34.5 4.4 31 271-301 1-31 (34)
93 COG3063 PilF Tfp pilus assembl 96.0 0.042 9E-07 48.0 8.5 95 194-302 76-170 (250)
94 TIGR02552 LcrH_SycD type III s 96.0 0.054 1.2E-06 43.1 8.8 63 230-300 18-80 (135)
95 KOG1125 TPR repeat-containing 96.0 0.013 2.9E-07 57.1 5.9 94 199-308 442-535 (579)
96 PF07719 TPR_2: Tetratricopept 95.9 0.019 4.2E-07 33.9 4.4 30 272-301 2-31 (34)
97 cd00189 TPR Tetratricopeptide 95.8 0.066 1.4E-06 38.0 8.0 61 232-300 3-63 (100)
98 PRK14574 hmsH outer membrane p 95.8 0.086 1.9E-06 55.3 11.4 93 191-299 38-130 (822)
99 KOG0548 Molecular co-chaperone 95.8 0.079 1.7E-06 51.5 10.0 108 192-323 7-114 (539)
100 KOG1126 DNA-binding cell divis 95.7 0.0065 1.4E-07 60.0 2.4 60 231-298 491-550 (638)
101 PRK15359 type III secretion sy 95.7 0.046 1E-06 44.6 7.1 67 234-313 29-95 (144)
102 PRK10049 pgaA outer membrane p 95.6 0.3 6.6E-06 51.1 14.5 96 197-301 320-423 (765)
103 PRK10049 pgaA outer membrane p 95.6 0.12 2.6E-06 54.1 11.5 93 191-300 53-145 (765)
104 PF12862 Apc5: Anaphase-promot 95.5 0.21 4.6E-06 37.5 9.8 66 239-304 8-74 (94)
105 PF14559 TPR_19: Tetratricopep 95.5 0.033 7.1E-07 38.7 5.0 52 198-257 2-53 (68)
106 KOG2002 TPR-containing nuclear 95.5 0.056 1.2E-06 55.9 8.3 89 197-299 656-744 (1018)
107 COG5010 TadD Flp pilus assembl 95.5 0.16 3.4E-06 45.2 10.2 91 193-299 106-196 (257)
108 KOG1130 Predicted G-alpha GTPa 95.5 0.08 1.7E-06 50.1 8.7 99 201-303 209-307 (639)
109 KOG0547 Translocase of outer m 95.5 0.091 2E-06 50.7 9.2 102 194-304 469-570 (606)
110 TIGR00540 hemY_coli hemY prote 95.5 0.15 3.2E-06 49.3 11.0 71 222-302 329-401 (409)
111 PF13525 YfiO: Outer membrane 95.4 1 2.2E-05 38.9 15.0 128 189-331 44-196 (203)
112 PRK11189 lipoprotein NlpI; Pro 95.4 0.14 3.1E-06 47.0 10.2 73 227-312 62-134 (296)
113 KOG1941 Acetylcholine receptor 95.4 0.33 7.2E-06 45.3 12.1 121 199-325 134-258 (518)
114 KOG0548 Molecular co-chaperone 95.4 0.44 9.5E-06 46.5 13.5 109 193-325 364-472 (539)
115 KOG1173 Anaphase-promoting com 95.3 0.11 2.4E-06 50.8 9.4 65 234-302 419-486 (611)
116 PF13176 TPR_7: Tetratricopept 95.3 0.049 1.1E-06 33.1 4.7 30 231-260 1-30 (36)
117 PF13181 TPR_8: Tetratricopept 95.3 0.04 8.7E-07 32.6 4.3 30 272-301 2-31 (34)
118 PF13429 TPR_15: Tetratricopep 95.3 0.15 3.3E-06 46.2 10.0 102 192-314 151-252 (280)
119 PRK15363 pathogenicity island 95.3 0.11 2.5E-06 42.9 8.0 73 226-311 32-104 (157)
120 KOG1155 Anaphase-promoting com 95.2 0.29 6.2E-06 47.1 11.5 89 221-321 427-515 (559)
121 COG2956 Predicted N-acetylgluc 95.2 0.33 7.1E-06 44.7 11.2 94 191-299 184-277 (389)
122 KOG2376 Signal recognition par 95.1 0.55 1.2E-05 46.4 13.4 93 233-325 114-229 (652)
123 KOG0547 Translocase of outer m 95.1 0.27 6E-06 47.5 11.1 120 184-320 112-232 (606)
124 PF12968 DUF3856: Domain of Un 95.1 1.3 2.8E-05 34.9 14.0 111 194-306 16-135 (144)
125 KOG4648 Uncharacterized conser 95.1 0.4 8.6E-06 44.5 11.6 116 183-322 93-208 (536)
126 PF13429 TPR_15: Tetratricopep 95.0 0.083 1.8E-06 47.9 7.2 94 193-302 186-279 (280)
127 PF08631 SPO22: Meiosis protei 95.0 0.52 1.1E-05 42.9 12.4 112 199-313 5-124 (278)
128 PRK10370 formate-dependent nit 94.9 0.35 7.6E-06 41.7 10.5 94 201-315 53-149 (198)
129 KOG4642 Chaperone-dependent E3 94.8 0.4 8.7E-06 42.3 10.3 96 193-304 16-111 (284)
130 KOG2076 RNA polymerase III tra 94.7 0.33 7.2E-06 50.0 11.0 94 188-296 415-508 (895)
131 KOG2002 TPR-containing nuclear 94.7 0.86 1.9E-05 47.5 13.9 122 191-325 456-579 (1018)
132 cd05804 StaR_like StaR_like; a 94.6 0.32 6.8E-06 45.5 10.3 75 221-303 106-180 (355)
133 PF10300 DUF3808: Protein of u 94.5 1.2 2.6E-05 43.8 14.3 124 190-324 270-400 (468)
134 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.22 4.8E-06 47.9 8.8 66 188-258 76-141 (453)
135 KOG4555 TPR repeat-containing 94.4 1.8 3.8E-05 34.8 12.2 96 193-300 49-144 (175)
136 PF08631 SPO22: Meiosis protei 94.4 0.15 3.2E-06 46.6 7.3 78 239-316 3-83 (278)
137 PF12895 Apc3: Anaphase-promot 94.2 0.1 2.2E-06 38.1 4.8 49 242-296 2-50 (84)
138 COG2976 Uncharacterized protei 94.1 2.1 4.6E-05 36.6 13.0 95 192-301 94-189 (207)
139 KOG1129 TPR repeat-containing 94.0 0.1 2.3E-06 47.9 5.4 28 275-302 362-389 (478)
140 COG4783 Putative Zn-dependent 94.0 1.1 2.3E-05 43.4 12.4 92 191-298 310-401 (484)
141 KOG1126 DNA-binding cell divis 94.0 0.12 2.7E-06 51.3 6.3 86 199-300 433-518 (638)
142 KOG1174 Anaphase-promoting com 94.0 0.49 1.1E-05 45.0 9.8 93 225-335 434-526 (564)
143 COG1729 Uncharacterized protei 94.0 0.34 7.3E-06 43.5 8.4 88 232-329 144-231 (262)
144 PRK10866 outer membrane biogen 93.9 0.88 1.9E-05 40.6 11.1 80 232-321 35-114 (243)
145 PF10579 Rapsyn_N: Rapsyn N-te 93.9 1.3 2.9E-05 32.0 9.7 71 188-263 7-77 (80)
146 KOG2003 TPR repeat-containing 93.7 0.23 4.9E-06 47.6 7.2 118 175-299 137-265 (840)
147 KOG1338 Uncharacterized conser 93.7 0.21 4.6E-06 46.8 6.8 80 27-106 173-263 (466)
148 KOG1155 Anaphase-promoting com 93.6 0.38 8.3E-06 46.3 8.4 92 202-301 345-462 (559)
149 PRK10747 putative protoheme IX 93.5 0.55 1.2E-05 45.1 9.8 97 195-299 161-291 (398)
150 KOG2376 Signal recognition par 93.4 1.3 2.7E-05 44.0 11.8 106 193-298 116-251 (652)
151 PRK10747 putative protoheme IX 93.4 0.75 1.6E-05 44.2 10.5 87 194-299 270-356 (398)
152 KOG0545 Aryl-hydrocarbon recep 93.3 1.3 2.9E-05 39.3 10.7 105 187-299 178-292 (329)
153 PLN03088 SGT1, suppressor of 93.3 0.46 9.9E-06 45.0 8.8 65 235-312 8-72 (356)
154 KOG2076 RNA polymerase III tra 93.3 1.2 2.7E-05 46.0 12.0 100 184-299 136-235 (895)
155 KOG0624 dsRNA-activated protei 93.2 1.9 4.1E-05 40.2 11.9 117 186-323 37-153 (504)
156 KOG2003 TPR repeat-containing 93.1 1.1 2.3E-05 43.2 10.6 101 198-322 501-601 (840)
157 PLN03081 pentatricopeptide (PP 93.1 1.3 2.8E-05 45.9 12.4 57 272-328 529-603 (697)
158 KOG1079 Transcriptional repres 93.1 0.098 2.1E-06 52.0 3.8 41 63-103 666-710 (739)
159 PF13371 TPR_9: Tetratricopept 93.1 0.93 2E-05 31.6 8.1 53 197-257 5-57 (73)
160 KOG1941 Acetylcholine receptor 92.8 1.2 2.7E-05 41.7 10.3 101 202-304 177-279 (518)
161 PF00244 14-3-3: 14-3-3 protei 92.7 4.1 8.8E-05 36.2 13.4 81 246-326 143-225 (236)
162 PF00515 TPR_1: Tetratricopept 92.7 0.34 7.4E-06 28.5 4.6 30 230-259 2-31 (34)
163 TIGR00540 hemY_coli hemY prote 92.6 6 0.00013 38.1 15.5 106 191-316 88-193 (409)
164 PF10516 SHNi-TPR: SHNi-TPR; 92.5 0.29 6.2E-06 30.2 4.1 36 273-308 3-38 (38)
165 KOG1585 Protein required for f 92.5 4.6 9.9E-05 36.0 12.8 99 197-304 41-143 (308)
166 PF13428 TPR_14: Tetratricopep 92.3 0.27 5.9E-06 31.1 4.0 37 273-314 3-39 (44)
167 PF07719 TPR_2: Tetratricopept 92.2 0.44 9.4E-06 27.8 4.6 30 230-259 2-31 (34)
168 KOG0624 dsRNA-activated protei 92.1 2.1 4.5E-05 39.9 10.7 117 188-322 270-387 (504)
169 PF10516 SHNi-TPR: SHNi-TPR; 92.0 0.43 9.3E-06 29.4 4.4 35 231-265 3-37 (38)
170 PF04733 Coatomer_E: Coatomer 92.0 2.8 6.2E-05 38.4 11.8 103 201-324 181-284 (290)
171 PF06552 TOM20_plant: Plant sp 91.6 5.4 0.00012 33.8 11.9 100 229-329 25-136 (186)
172 KOG3060 Uncharacterized conser 91.5 1.3 2.8E-05 39.6 8.4 65 230-302 155-222 (289)
173 PF03704 BTAD: Bacterial trans 91.2 5.3 0.00011 32.1 11.6 72 192-271 67-139 (146)
174 PF10602 RPN7: 26S proteasome 91.2 4.7 0.0001 34.1 11.5 102 191-299 40-141 (177)
175 PRK10153 DNA-binding transcrip 91.1 0.67 1.5E-05 46.1 7.2 66 232-311 423-488 (517)
176 PF13181 TPR_8: Tetratricopept 91.0 0.62 1.4E-05 27.2 4.4 31 230-260 2-32 (34)
177 PF13174 TPR_6: Tetratricopept 91.0 0.35 7.6E-06 27.9 3.2 28 273-300 2-29 (33)
178 PF13428 TPR_14: Tetratricopep 91.0 0.51 1.1E-05 29.8 4.2 27 231-257 3-29 (44)
179 KOG4555 TPR repeat-containing 90.5 0.94 2E-05 36.4 6.0 56 238-301 52-107 (175)
180 KOG1174 Anaphase-promoting com 90.5 4.8 0.0001 38.5 11.6 127 195-331 342-496 (564)
181 smart00028 TPR Tetratricopepti 90.2 0.45 9.7E-06 26.2 3.2 28 273-300 3-30 (34)
182 PF04781 DUF627: Protein of un 89.9 7.7 0.00017 30.1 10.6 103 194-300 3-107 (111)
183 KOG1125 TPR repeat-containing 89.9 0.95 2.1E-05 44.6 6.8 62 231-300 432-493 (579)
184 KOG1128 Uncharacterized conser 89.7 3.5 7.6E-05 41.9 10.7 120 164-299 457-581 (777)
185 COG3071 HemY Uncharacterized e 89.7 5.3 0.00012 37.8 11.3 95 193-299 269-389 (400)
186 KOG4162 Predicted calmodulin-b 89.7 4.1 8.8E-05 41.7 11.1 91 195-301 692-784 (799)
187 COG4700 Uncharacterized protei 89.6 6.7 0.00014 33.6 10.7 95 191-299 93-188 (251)
188 PLN03077 Protein ECB2; Provisi 89.5 9.6 0.00021 40.5 14.7 125 197-328 599-766 (857)
189 KOG0553 TPR repeat-containing 89.4 1.3 2.7E-05 40.4 6.7 59 192-258 120-178 (304)
190 KOG1081 Transcription factor N 89.1 0.19 4E-06 49.2 1.4 51 54-104 362-417 (463)
191 PRK14574 hmsH outer membrane p 89.0 11 0.00025 39.8 14.4 98 194-299 374-478 (822)
192 PF09295 ChAPs: ChAPs (Chs5p-A 88.7 4.9 0.00011 38.6 10.7 59 229-295 234-292 (395)
193 PF13174 TPR_6: Tetratricopept 88.6 1.1 2.3E-05 25.7 4.1 28 231-258 2-29 (33)
194 PRK15331 chaperone protein Sic 88.4 3.8 8.1E-05 34.2 8.4 76 225-308 33-108 (165)
195 PLN03218 maturation of RBCL 1; 88.2 7.3 0.00016 42.4 12.7 90 196-297 516-605 (1060)
196 PF12862 Apc5: Anaphase-promot 88.0 9.2 0.0002 28.5 10.4 79 199-279 10-89 (94)
197 PF12569 NARP1: NMDA receptor- 88.0 2.3 5E-05 42.4 8.2 63 227-297 192-254 (517)
198 COG3118 Thioredoxin domain-con 87.7 22 0.00048 32.5 15.1 134 177-321 119-301 (304)
199 PF13431 TPR_17: Tetratricopep 87.5 0.4 8.6E-06 28.6 1.6 25 267-291 9-33 (34)
200 PRK14720 transcript cleavage f 87.4 3.6 7.7E-05 43.6 9.5 63 231-302 118-180 (906)
201 smart00101 14_3_3 14-3-3 homol 87.4 21 0.00045 31.9 13.8 79 245-326 144-227 (244)
202 COG5010 TadD Flp pilus assembl 87.3 6.7 0.00015 35.0 9.8 85 235-327 106-192 (257)
203 KOG4162 Predicted calmodulin-b 87.1 7.3 0.00016 40.0 11.0 79 221-309 473-551 (799)
204 PF07721 TPR_4: Tetratricopept 87.1 0.72 1.6E-05 25.6 2.4 25 272-296 2-26 (26)
205 PF14853 Fis1_TPR_C: Fis1 C-te 87.0 2.9 6.3E-05 27.8 5.7 44 274-322 4-47 (53)
206 KOG3081 Vesicle coat complex C 86.9 20 0.00043 32.4 12.5 28 272-299 208-235 (299)
207 KOG1586 Protein required for f 86.8 20 0.00044 31.8 12.2 97 202-303 49-146 (288)
208 COG4783 Putative Zn-dependent 86.7 25 0.00053 34.4 13.9 107 197-323 350-473 (484)
209 PF14561 TPR_20: Tetratricopep 86.5 3.9 8.4E-05 30.4 6.9 50 272-322 23-88 (90)
210 PF14561 TPR_20: Tetratricopep 86.5 2.8 6.1E-05 31.2 6.1 53 229-281 22-89 (90)
211 PF10602 RPN7: 26S proteasome 86.2 7 0.00015 33.0 9.2 72 227-303 34-105 (177)
212 TIGR03504 FimV_Cterm FimV C-te 86.0 2.1 4.7E-05 27.3 4.5 40 275-320 3-42 (44)
213 cd02681 MIT_calpain7_1 MIT: do 85.6 4.6 9.9E-05 29.1 6.6 45 270-314 5-51 (76)
214 KOG3617 WD40 and TPR repeat-co 85.5 5 0.00011 41.7 8.9 74 198-297 811-884 (1416)
215 KOG1585 Protein required for f 85.3 11 0.00025 33.6 10.0 82 221-304 23-104 (308)
216 KOG3364 Membrane protein invol 85.3 10 0.00022 30.6 8.9 86 229-323 32-118 (149)
217 KOG0508 Ankyrin repeat protein 85.2 2.2 4.7E-05 41.3 6.0 72 253-324 319-390 (615)
218 PF09295 ChAPs: ChAPs (Chs5p-A 84.6 11 0.00025 36.1 10.7 88 200-306 182-269 (395)
219 COG4235 Cytochrome c biogenesi 84.5 32 0.0007 31.4 13.2 117 194-330 163-282 (287)
220 PF09670 Cas_Cas02710: CRISPR- 84.2 33 0.00071 32.8 13.8 113 190-308 134-282 (379)
221 PF09986 DUF2225: Uncharacteri 84.2 3.8 8.2E-05 35.8 6.8 66 242-308 90-155 (214)
222 PF13512 TPR_18: Tetratricopep 84.2 6.5 0.00014 32.0 7.6 50 189-243 49-98 (142)
223 PLN03081 pentatricopeptide (PP 84.1 4.4 9.5E-05 41.9 8.4 26 231-256 393-418 (697)
224 KOG0376 Serine-threonine phosp 84.1 4.8 0.0001 39.1 7.8 113 192-325 9-121 (476)
225 COG2976 Uncharacterized protei 84.0 6.6 0.00014 33.7 7.8 60 232-296 92-151 (207)
226 PLN03218 maturation of RBCL 1; 83.9 15 0.00032 40.1 12.4 54 197-255 552-605 (1060)
227 KOG1586 Protein required for f 83.6 20 0.00043 31.9 10.7 60 235-297 119-180 (288)
228 PRK10941 hypothetical protein; 83.3 18 0.00038 32.9 10.9 86 227-325 179-264 (269)
229 PLN03077 Protein ECB2; Provisi 83.0 11 0.00024 40.1 11.0 87 197-296 564-650 (857)
230 KOG0550 Molecular chaperone (D 82.5 7.6 0.00016 37.2 8.3 95 197-300 213-316 (486)
231 KOG2041 WD40 repeat protein [G 82.5 25 0.00055 36.1 12.2 51 270-320 795-863 (1189)
232 KOG1129 TPR repeat-containing 82.2 13 0.00028 34.7 9.4 63 231-301 258-320 (478)
233 PF09311 Rab5-bind: Rabaptin-l 82.2 4 8.6E-05 34.7 6.0 47 224-270 135-181 (181)
234 PF04733 Coatomer_E: Coatomer 81.9 30 0.00066 31.7 12.1 83 199-299 143-229 (290)
235 PLN02789 farnesyltranstransfer 81.2 45 0.00097 31.1 13.1 52 199-258 49-101 (320)
236 cd02682 MIT_AAA_Arch MIT: doma 81.2 11 0.00024 27.1 7.0 53 270-322 5-59 (75)
237 COG2909 MalT ATP-dependent tra 81.0 26 0.00055 36.8 12.0 108 193-304 421-530 (894)
238 PF04184 ST7: ST7 protein; In 81.0 37 0.0008 33.5 12.5 98 189-299 173-287 (539)
239 PF11817 Foie-gras_1: Foie gra 80.1 33 0.00071 30.6 11.5 64 229-294 178-241 (247)
240 cd02679 MIT_spastin MIT: domai 80.0 13 0.00029 26.9 7.2 60 270-329 7-75 (79)
241 PF04184 ST7: ST7 protein; In 79.4 18 0.00039 35.6 9.9 62 229-296 259-320 (539)
242 KOG1156 N-terminal acetyltrans 79.1 14 0.0003 37.4 9.1 96 189-300 9-104 (700)
243 PF04910 Tcf25: Transcriptiona 79.0 56 0.0012 31.0 13.2 72 186-257 39-131 (360)
244 PRK11906 transcriptional regul 78.9 18 0.00038 35.3 9.7 68 221-299 333-400 (458)
245 PF11817 Foie-gras_1: Foie gra 78.8 24 0.00051 31.5 10.2 60 267-328 174-233 (247)
246 PF13431 TPR_17: Tetratricopep 78.5 2.7 5.9E-05 24.9 2.7 25 222-249 9-33 (34)
247 KOG1127 TPR repeat-containing 77.6 25 0.00055 37.5 10.8 99 190-304 5-107 (1238)
248 KOG2796 Uncharacterized conser 77.6 18 0.00039 32.7 8.6 94 198-301 223-316 (366)
249 PRK14720 transcript cleavage f 77.5 8.9 0.00019 40.7 7.8 98 221-329 23-132 (906)
250 KOG0508 Ankyrin repeat protein 77.1 1.6 3.5E-05 42.1 2.1 70 213-282 321-390 (615)
251 TIGR03504 FimV_Cterm FimV C-te 76.9 3.3 7.2E-05 26.4 2.9 26 232-257 2-27 (44)
252 PF12569 NARP1: NMDA receptor- 76.7 62 0.0013 32.4 13.2 105 194-306 201-340 (517)
253 PF10255 Paf67: RNA polymerase 76.6 11 0.00024 36.3 7.6 75 231-305 124-198 (404)
254 PF12753 Nro1: Nuclear pore co 76.6 5.1 0.00011 38.0 5.3 69 246-319 335-403 (404)
255 KOG3783 Uncharacterized conser 76.4 26 0.00056 34.7 10.0 82 235-322 455-537 (546)
256 KOG1127 TPR repeat-containing 76.2 19 0.00042 38.3 9.6 102 196-306 605-706 (1238)
257 PF07721 TPR_4: Tetratricopept 75.9 4.7 0.0001 22.2 3.1 23 231-253 3-25 (26)
258 KOG3060 Uncharacterized conser 75.5 22 0.00049 31.9 8.6 90 193-298 92-181 (289)
259 COG3947 Response regulator con 75.5 19 0.0004 33.1 8.2 71 230-308 280-350 (361)
260 smart00028 TPR Tetratricopepti 75.2 6.4 0.00014 21.0 3.8 28 231-258 3-30 (34)
261 PF10345 Cohesin_load: Cohesin 75.0 74 0.0016 32.4 13.7 99 199-302 72-170 (608)
262 PF14853 Fis1_TPR_C: Fis1 C-te 74.8 7.9 0.00017 25.7 4.4 27 231-257 3-29 (53)
263 PF09311 Rab5-bind: Rabaptin-l 74.8 8 0.00017 32.8 5.6 50 263-312 132-181 (181)
264 KOG2047 mRNA splicing factor [ 74.7 96 0.0021 31.8 13.5 46 276-322 663-723 (835)
265 cd02683 MIT_1 MIT: domain cont 74.7 13 0.00028 26.8 5.9 50 270-319 5-56 (77)
266 PF05053 Menin: Menin; InterP 74.0 65 0.0014 32.3 12.1 74 246-322 296-371 (618)
267 smart00745 MIT Microtubule Int 73.9 22 0.00048 25.2 7.1 36 270-305 7-42 (77)
268 KOG0495 HAT repeat protein [RN 73.8 46 0.001 34.1 11.1 30 272-301 652-681 (913)
269 KOG4648 Uncharacterized conser 73.4 14 0.00029 34.7 7.0 56 236-292 104-159 (536)
270 PRK00398 rpoP DNA-directed RNA 72.8 2.9 6.3E-05 26.7 1.9 29 145-175 3-31 (46)
271 cd02684 MIT_2 MIT: domain cont 72.4 21 0.00046 25.5 6.5 47 270-316 5-52 (75)
272 KOG4814 Uncharacterized conser 71.8 46 0.001 33.9 10.6 104 190-303 357-460 (872)
273 KOG3785 Uncharacterized conser 71.7 16 0.00035 34.4 7.1 87 196-297 31-117 (557)
274 PF01535 PPR: PPR repeat; Int 71.4 7 0.00015 21.7 3.2 26 232-257 3-28 (31)
275 KOG4340 Uncharacterized conser 71.2 30 0.00065 31.9 8.5 77 202-294 25-101 (459)
276 PLN02789 farnesyltranstransfer 71.0 56 0.0012 30.4 10.8 82 202-299 87-170 (320)
277 KOG2461 Transcription factor B 70.7 2.5 5.4E-05 40.5 1.7 26 80-105 121-146 (396)
278 PF04212 MIT: MIT (microtubule 70.2 20 0.00044 24.8 6.0 45 270-314 4-49 (69)
279 KOG4563 Cell cycle-regulated h 69.8 15 0.00033 34.5 6.5 57 235-291 47-103 (400)
280 PF02259 FAT: FAT domain; Int 69.4 88 0.0019 28.8 12.0 113 189-305 148-292 (352)
281 cd02656 MIT MIT: domain contai 69.2 31 0.00068 24.3 6.9 35 271-305 6-40 (75)
282 TIGR02710 CRISPR-associated pr 69.0 1.1E+02 0.0024 29.3 13.2 108 192-302 135-277 (380)
283 PRK10153 DNA-binding transcrip 68.7 61 0.0013 32.4 11.1 30 272-301 421-450 (517)
284 KOG1308 Hsp70-interacting prot 68.2 4.9 0.00011 37.4 3.0 97 187-299 114-210 (377)
285 PF00244 14-3-3: 14-3-3 protei 67.8 24 0.00053 31.3 7.3 56 204-259 143-199 (236)
286 cd02677 MIT_SNX15 MIT: domain 67.3 29 0.00063 24.8 6.3 50 270-319 5-56 (75)
287 KOG4234 TPR repeat-containing 65.8 15 0.00033 31.8 5.3 60 238-300 104-163 (271)
288 COG4700 Uncharacterized protei 65.8 24 0.00052 30.3 6.4 67 228-301 88-154 (251)
289 COG0457 NrfG FOG: TPR repeat [ 65.7 69 0.0015 25.7 9.8 95 197-303 140-234 (291)
290 KOG4340 Uncharacterized conser 65.4 24 0.00052 32.5 6.7 60 232-299 147-206 (459)
291 cd02680 MIT_calpain7_2 MIT: do 65.0 23 0.00049 25.4 5.3 47 270-319 5-52 (75)
292 KOG2300 Uncharacterized conser 64.5 1.5E+02 0.0033 29.3 12.8 68 240-311 456-523 (629)
293 KOG2610 Uncharacterized conser 64.1 70 0.0015 30.1 9.5 47 257-303 158-207 (491)
294 TIGR01010 BexC_CtrB_KpsE polys 64.0 1.1E+02 0.0023 28.9 11.5 80 244-330 181-262 (362)
295 cd02678 MIT_VPS4 MIT: domain c 63.7 32 0.0007 24.4 6.0 45 270-314 5-50 (75)
296 PF07754 DUF1610: Domain of un 62.7 5.7 0.00012 21.8 1.4 21 153-173 4-24 (24)
297 cd02681 MIT_calpain7_1 MIT: do 62.6 55 0.0012 23.5 8.1 34 186-219 5-38 (76)
298 KOG2561 Adaptor protein NUB1, 62.4 49 0.0011 32.1 8.4 112 189-304 165-300 (568)
299 TIGR00756 PPR pentatricopeptid 62.2 15 0.00033 20.7 3.5 26 232-257 3-28 (35)
300 PF10300 DUF3808: Protein of u 61.8 27 0.00058 34.4 7.1 45 250-298 250-294 (468)
301 KOG0276 Vesicle coat complex C 61.6 83 0.0018 31.9 10.1 86 233-320 670-773 (794)
302 PF13041 PPR_2: PPR repeat fam 61.6 18 0.0004 23.0 4.1 27 231-257 5-31 (50)
303 PF13812 PPR_3: Pentatricopept 60.2 16 0.00035 20.7 3.4 27 231-257 3-29 (34)
304 COG3947 Response regulator con 59.4 63 0.0014 29.8 8.2 68 189-264 281-348 (361)
305 cd03572 ENTH_epsin_related ENT 58.8 55 0.0012 25.9 7.0 68 264-332 12-93 (122)
306 KOG2796 Uncharacterized conser 58.6 1.5E+02 0.0032 27.1 11.5 58 231-295 179-236 (366)
307 PF12968 DUF3856: Domain of Un 58.5 92 0.002 24.8 9.5 67 242-309 22-92 (144)
308 PF12854 PPR_1: PPR repeat 58.3 19 0.00041 21.2 3.4 25 230-254 8-32 (34)
309 cd09034 BRO1_Alix_like Protein 58.2 1.6E+02 0.0035 27.4 12.2 36 269-304 249-284 (345)
310 KOG3617 WD40 and TPR repeat-co 57.9 72 0.0016 33.7 9.2 78 224-302 853-943 (1416)
311 PF01485 IBR: IBR domain; Int 57.8 8.1 0.00018 26.1 2.0 28 146-173 19-48 (64)
312 KOG1497 COP9 signalosome, subu 57.5 1.6E+02 0.0034 27.6 10.5 76 225-304 99-177 (399)
313 PF04071 zf-like: Cysteine-ric 57.2 43 0.00094 24.7 5.7 41 153-193 38-79 (86)
314 TIGR02059 swm_rep_I cyanobacte 56.5 23 0.00049 26.9 4.2 24 82-105 76-99 (101)
315 PRK11906 transcriptional regul 56.4 1.1E+02 0.0025 29.8 10.0 79 225-316 291-378 (458)
316 PF10345 Cohesin_load: Cohesin 56.2 1.8E+02 0.004 29.6 12.3 75 226-303 56-131 (608)
317 COG2909 MalT ATP-dependent tra 55.6 2.8E+02 0.0061 29.5 13.5 89 225-319 576-664 (894)
318 PF10373 EST1_DNA_bind: Est1 D 55.6 20 0.00044 31.9 4.8 44 248-299 1-44 (278)
319 PF13281 DUF4071: Domain of un 54.0 63 0.0014 30.8 7.8 90 201-301 155-256 (374)
320 KOG3785 Uncharacterized conser 53.5 1.3E+02 0.0029 28.5 9.5 49 198-254 68-116 (557)
321 COG5159 RPN6 26S proteasome re 53.2 1.9E+02 0.0041 26.7 11.3 48 194-245 10-61 (421)
322 PF08271 TF_Zn_Ribbon: TFIIB z 52.6 8.3 0.00018 24.2 1.2 29 147-177 2-31 (43)
323 KOG2581 26S proteasome regulat 52.4 2.3E+02 0.005 27.5 12.1 74 220-299 200-275 (493)
324 COG3629 DnrI DNA-binding trans 52.3 1.8E+02 0.0038 26.7 10.1 70 187-264 153-222 (280)
325 smart00101 14_3_3 14-3-3 homol 52.3 67 0.0014 28.7 7.3 56 204-259 145-201 (244)
326 cd02678 MIT_VPS4 MIT: domain c 51.9 83 0.0018 22.2 7.4 35 185-219 4-38 (75)
327 PF09082 DUF1922: Domain of un 51.3 6.7 0.00015 27.4 0.6 58 146-224 4-61 (68)
328 cd09247 BRO1_Alix_like_2 Prote 50.9 1.1E+02 0.0024 28.8 9.0 61 269-329 251-315 (346)
329 COG3071 HemY Uncharacterized e 50.8 2.3E+02 0.0051 27.1 14.1 104 193-316 90-193 (400)
330 KOG0495 HAT repeat protein [RN 50.7 70 0.0015 32.8 7.7 47 240-294 662-708 (913)
331 KOG0551 Hsp90 co-chaperone CNS 50.3 2.3E+02 0.0049 26.8 12.0 87 197-296 91-178 (390)
332 KOG2053 Mitochondrial inherita 49.9 1.3E+02 0.0028 31.9 9.6 22 235-256 83-104 (932)
333 KOG3616 Selective LIM binding 49.8 1.4E+02 0.0031 31.2 9.7 34 261-294 871-905 (1636)
334 PF09613 HrpB1_HrpK: Bacterial 49.5 1.5E+02 0.0033 24.6 9.1 60 189-256 12-71 (160)
335 KOG1128 Uncharacterized conser 49.5 34 0.00073 35.2 5.4 51 241-299 497-547 (777)
336 COG3629 DnrI DNA-binding trans 49.4 1.8E+02 0.0039 26.6 9.7 74 229-310 153-226 (280)
337 PRK11519 tyrosine kinase; Prov 48.6 1.6E+02 0.0034 30.8 10.5 32 296-327 325-356 (719)
338 COG4235 Cytochrome c biogenesi 48.5 91 0.002 28.6 7.6 63 229-299 156-221 (287)
339 KOG0543 FKBP-type peptidyl-pro 48.4 2.6E+02 0.0056 26.9 13.9 73 192-277 262-334 (397)
340 PF04810 zf-Sec23_Sec24: Sec23 48.0 10 0.00022 23.5 1.1 28 146-175 3-34 (40)
341 PF02259 FAT: FAT domain; Int 47.8 1.2E+02 0.0025 27.9 8.7 73 227-303 144-217 (352)
342 KOG1156 N-terminal acetyltrans 47.6 1E+02 0.0022 31.4 8.3 65 227-299 369-433 (700)
343 COG4649 Uncharacterized protei 47.3 71 0.0015 27.2 6.1 57 217-275 155-211 (221)
344 PF10952 DUF2753: Protein of u 47.1 1.5E+02 0.0032 23.7 8.4 68 234-301 6-80 (140)
345 KOG0546 HSP90 co-chaperone CPR 46.7 31 0.00068 32.4 4.4 99 193-299 228-337 (372)
346 KOG2709 Uncharacterized conser 46.7 46 0.001 32.0 5.5 59 271-329 22-91 (560)
347 PF09297 zf-NADH-PPase: NADH p 46.6 15 0.00034 21.3 1.6 23 152-174 8-30 (32)
348 KOG2155 Tubulin-tyrosine ligas 46.3 46 0.001 32.2 5.5 115 2-116 127-264 (631)
349 PF08666 SAF: SAF domain; Int 45.1 14 0.00031 24.8 1.6 15 84-98 3-17 (63)
350 PF15015 NYD-SP12_N: Spermatog 44.6 3.1E+02 0.0068 26.8 13.3 130 188-325 177-316 (569)
351 PF04190 DUF410: Protein of un 44.5 2.4E+02 0.0051 25.3 11.6 79 235-316 16-96 (260)
352 PF06552 TOM20_plant: Plant sp 44.4 1.9E+02 0.0042 24.6 8.4 51 203-261 51-105 (186)
353 PF12931 Sec16_C: Sec23-bindin 44.2 1.7E+02 0.0037 26.7 8.9 56 272-328 199-255 (284)
354 PF04053 Coatomer_WDAD: Coatom 43.0 43 0.00093 32.8 5.0 74 231-307 349-443 (443)
355 KOG2047 mRNA splicing factor [ 42.4 2.2E+02 0.0049 29.3 9.7 45 258-302 235-279 (835)
356 COG3524 KpsE Capsule polysacch 42.2 2.2E+02 0.0049 26.3 8.9 75 253-332 199-273 (372)
357 KOG4563 Cell cycle-regulated h 42.1 1.1E+02 0.0024 29.0 7.2 63 184-246 38-100 (400)
358 PF02150 RNA_POL_M_15KD: RNA p 41.5 9.7 0.00021 22.9 0.2 26 152-177 6-32 (35)
359 cd02683 MIT_1 MIT: domain cont 41.0 1.3E+02 0.0029 21.5 7.0 35 187-221 6-40 (77)
360 KOG3616 Selective LIM binding 41.0 1.2E+02 0.0027 31.6 7.8 78 243-323 746-835 (1636)
361 smart00661 RPOL9 RNA polymeras 40.4 20 0.00043 23.2 1.6 25 152-176 5-31 (52)
362 cd02684 MIT_2 MIT: domain cont 40.2 1.3E+02 0.0029 21.3 7.2 43 186-228 5-48 (75)
363 KOG2041 WD40 repeat protein [G 39.7 4.7E+02 0.01 27.4 11.8 47 225-271 792-856 (1189)
364 PF04910 Tcf25: Transcriptiona 39.4 35 0.00075 32.4 3.7 41 267-307 36-76 (360)
365 cd09243 BRO1_Brox_like Protein 38.6 1.5E+02 0.0032 28.1 7.7 37 267-303 244-280 (353)
366 PF08646 Rep_fac-A_C: Replicat 38.3 15 0.00032 29.8 0.9 26 148-174 21-46 (146)
367 cd02680 MIT_calpain7_2 MIT: do 38.2 1.5E+02 0.0032 21.2 6.7 34 186-219 5-38 (75)
368 PF11207 DUF2989: Protein of u 38.1 1.9E+02 0.0042 25.0 7.6 61 225-290 137-197 (203)
369 KOG0686 COP9 signalosome, subu 37.8 2.3E+02 0.005 27.4 8.6 61 192-257 155-215 (466)
370 COG2158 Uncharacterized protei 37.8 58 0.0013 24.9 3.8 36 156-191 53-88 (112)
371 KOG1070 rRNA processing protei 37.5 3.7E+02 0.008 30.4 11.0 65 231-303 1532-1596(1710)
372 KOG3824 Huntingtin interacting 37.3 1.1E+02 0.0024 28.5 6.3 58 235-300 122-179 (472)
373 PF10867 DUF2664: Protein of u 36.4 20 0.00043 26.6 1.2 18 297-314 9-26 (89)
374 COG1997 RPL43A Ribosomal prote 36.3 24 0.00053 26.0 1.6 28 146-175 36-63 (89)
375 COG1084 Predicted GTPase [Gene 36.2 2.4E+02 0.0052 26.5 8.3 88 221-308 75-165 (346)
376 KOG2471 TPR repeat-containing 35.7 1.2E+02 0.0026 30.1 6.5 115 189-303 242-367 (696)
377 PF04212 MIT: MIT (microtubule 35.4 95 0.0021 21.3 4.6 31 187-217 5-35 (69)
378 PF04423 Rad50_zn_hook: Rad50 35.4 58 0.0012 21.4 3.3 26 167-192 22-47 (54)
379 TIGR00373 conserved hypothetic 35.0 81 0.0018 26.1 4.8 37 117-161 106-142 (158)
380 PRK09841 cryptic autophosphory 34.7 3.5E+02 0.0076 28.3 10.5 30 299-328 328-357 (726)
381 COG4105 ComL DNA uptake lipopr 34.5 3.5E+02 0.0075 24.4 15.3 126 189-326 73-217 (254)
382 PRK06266 transcription initiat 34.5 73 0.0016 26.9 4.5 36 117-160 114-149 (178)
383 COG0457 NrfG FOG: TPR repeat [ 34.5 2.3E+02 0.0051 22.4 11.1 90 199-303 179-268 (291)
384 smart00647 IBR In Between Ring 34.5 36 0.00078 22.8 2.2 28 146-173 19-48 (64)
385 PRK11827 hypothetical protein; 34.2 34 0.00074 23.4 2.0 35 141-177 4-38 (60)
386 TIGR03017 EpsF chain length de 33.9 80 0.0017 30.6 5.4 35 294-328 266-300 (444)
387 TIGR03007 pepcterm_ChnLen poly 33.5 4.7E+02 0.01 25.7 13.9 39 291-329 256-294 (498)
388 KOG2053 Mitochondrial inherita 33.3 6.3E+02 0.014 27.1 11.6 12 234-245 115-126 (932)
389 PF11781 RRN7: RNA polymerase 33.2 27 0.00058 21.1 1.2 26 147-175 10-35 (36)
390 PRK13184 pknD serine/threonine 33.1 4.1E+02 0.009 28.8 10.7 61 251-319 534-595 (932)
391 PF04781 DUF627: Protein of un 32.6 1.5E+02 0.0033 23.0 5.5 45 236-280 3-49 (111)
392 PF07720 TPR_3: Tetratricopept 32.1 1.1E+02 0.0024 18.3 3.8 22 274-295 4-25 (36)
393 PF10255 Paf67: RNA polymerase 31.4 77 0.0017 30.6 4.6 65 199-263 134-198 (404)
394 cd02656 MIT MIT: domain contai 31.4 1.8E+02 0.004 20.2 7.6 34 187-220 6-39 (75)
395 PF03097 BRO1: BRO1-like domai 31.2 4.5E+02 0.0098 24.7 14.5 36 270-305 238-273 (377)
396 PF07227 DUF1423: Protein of u 31.1 33 0.00072 33.2 2.1 14 164-177 182-195 (446)
397 KOG0006 E3 ubiquitin-protein l 31.1 29 0.00063 31.9 1.6 31 143-173 313-344 (446)
398 KOG0978 E3 ubiquitin ligase in 30.9 9.4 0.0002 39.1 -1.7 62 112-182 634-695 (698)
399 PF13281 DUF4071: Domain of un 30.8 4.8E+02 0.01 24.9 10.5 66 229-298 141-209 (374)
400 COG1794 RacX Aspartate racemas 30.8 92 0.002 27.4 4.5 64 244-308 11-77 (230)
401 PF02255 PTS_IIA: PTS system, 30.7 2.3E+02 0.005 21.2 9.7 68 186-260 13-95 (96)
402 KOG2300 Uncharacterized conser 30.7 5.6E+02 0.012 25.6 10.9 94 198-295 456-551 (629)
403 PF12921 ATP13: Mitochondrial 30.5 2.7E+02 0.0059 21.9 7.5 83 233-317 6-96 (126)
404 smart00671 SEL1 Sel1-like repe 30.2 98 0.0021 17.5 3.5 27 273-299 3-33 (36)
405 COG1675 TFA1 Transcription ini 30.0 1.9E+02 0.0041 24.5 6.2 72 79-158 58-143 (176)
406 PRK06266 transcription initiat 28.4 46 0.00099 28.2 2.3 32 145-178 117-149 (178)
407 KOG0796 Spliceosome subunit [R 28.3 4.9E+02 0.011 24.2 11.9 41 177-217 121-161 (319)
408 cd02682 MIT_AAA_Arch MIT: doma 28.1 2.3E+02 0.0049 20.3 7.9 35 186-220 5-39 (75)
409 PF10952 DUF2753: Protein of u 27.9 3.2E+02 0.0068 21.9 8.7 71 195-265 9-86 (140)
410 cd02679 MIT_spastin MIT: domai 27.8 2.4E+02 0.0051 20.4 6.9 31 187-217 8-38 (79)
411 COG2250 Uncharacterized conser 27.8 2.1E+02 0.0045 22.8 5.9 54 271-324 13-70 (132)
412 KOG3024 Uncharacterized conser 27.8 4.9E+02 0.011 24.0 12.2 112 198-317 17-134 (312)
413 PF09538 FYDLN_acid: Protein o 27.7 42 0.00092 25.9 1.8 29 147-178 11-39 (108)
414 PF12760 Zn_Tnp_IS1595: Transp 27.5 60 0.0013 20.6 2.2 11 163-173 35-45 (46)
415 PF02748 PyrI_C: Aspartate car 27.4 53 0.0011 21.7 2.0 20 161-180 31-50 (52)
416 cd09246 BRO1_Alix_like_1 Prote 27.3 3.4E+02 0.0075 25.5 8.3 38 267-304 243-280 (353)
417 cd09241 BRO1_ScRim20-like Prot 27.3 5.3E+02 0.012 24.3 13.6 37 268-304 234-270 (355)
418 COG4649 Uncharacterized protei 27.2 4E+02 0.0087 22.8 11.6 41 259-299 155-195 (221)
419 COG5600 Transcription-associat 27.1 3.7E+02 0.0081 25.7 8.1 67 231-301 179-250 (413)
420 KOG1538 Uncharacterized conser 26.8 1.6E+02 0.0034 30.4 5.8 50 236-296 780-829 (1081)
421 KOG2561 Adaptor protein NUB1, 26.8 1.4E+02 0.0031 29.0 5.4 82 230-315 164-255 (568)
422 PRK09591 celC cellobiose phosp 26.6 2.9E+02 0.0064 21.1 8.5 69 186-261 19-102 (104)
423 PF05843 Suf: Suppressor of fo 26.2 3.3E+02 0.0071 24.6 7.7 82 203-300 17-99 (280)
424 KOG3364 Membrane protein invol 25.7 3.7E+02 0.008 21.9 7.6 64 188-257 33-99 (149)
425 KOG1920 IkappaB kinase complex 25.2 3E+02 0.0065 30.4 7.9 23 275-297 956-978 (1265)
426 KOG2880 SMAD6 interacting prot 25.2 97 0.0021 29.2 3.9 60 265-325 29-88 (424)
427 cd09240 BRO1_Alix Protein-inte 24.9 5.8E+02 0.013 23.9 14.1 61 270-330 254-316 (346)
428 smart00770 Zn_dep_PLPC Zinc de 24.8 1.8E+02 0.004 25.9 5.5 45 266-310 109-153 (241)
429 KOG2908 26S proteasome regulat 24.8 6E+02 0.013 24.1 16.6 83 237-321 83-168 (380)
430 PF01599 Ribosomal_S27: Riboso 24.8 41 0.00089 21.8 1.0 27 146-173 19-46 (47)
431 PF03564 DUF1759: Protein of u 24.2 66 0.0014 25.7 2.5 30 293-322 55-84 (145)
432 PHA02537 M terminase endonucle 24.1 5.1E+02 0.011 22.9 8.7 36 269-304 167-211 (230)
433 PF02561 FliS: Flagellar prote 23.4 3.6E+02 0.0077 20.9 6.6 26 277-302 35-60 (122)
434 PF01726 LexA_DNA_bind: LexA D 23.4 1.8E+02 0.0038 20.1 4.1 37 1-39 1-37 (65)
435 smart00659 RPOLCX RNA polymera 23.4 62 0.0013 20.5 1.7 8 166-173 20-27 (44)
436 COG1188 Ribosome-associated he 23.2 92 0.002 23.7 2.8 20 85-104 43-62 (100)
437 KOG3783 Uncharacterized conser 22.9 7.9E+02 0.017 24.7 10.7 84 232-323 306-397 (546)
438 cd09242 BRO1_ScBro1_like Prote 22.8 2.2E+02 0.0047 26.8 6.0 37 268-304 241-277 (348)
439 PRK13276 cell wall biosynthesi 22.8 1.8E+02 0.0039 25.6 5.0 27 301-327 104-130 (224)
440 COG4976 Predicted methyltransf 22.6 1.3E+02 0.0027 26.9 3.9 53 240-300 6-58 (287)
441 KOG3793 Transcription factor N 22.6 5.3E+02 0.012 23.4 7.8 60 244-303 202-264 (362)
442 cd02677 MIT_SNX15 MIT: domain 22.4 2.9E+02 0.0064 19.6 6.7 34 186-219 5-38 (75)
443 TIGR00595 priA primosomal prot 22.4 63 0.0014 32.2 2.4 10 165-174 253-262 (505)
444 KOG0545 Aryl-hydrocarbon recep 22.2 2.6E+02 0.0056 25.3 5.8 43 277-319 184-229 (329)
445 PF05053 Menin: Menin; InterP 22.2 8.4E+02 0.018 24.8 10.4 72 203-277 295-367 (618)
446 PRK14873 primosome assembly pr 22.2 56 0.0012 33.8 2.0 27 165-191 422-451 (665)
447 PRK05978 hypothetical protein; 21.9 61 0.0013 26.6 1.8 13 118-130 29-41 (148)
448 smart00858 SAF This domain fam 21.7 60 0.0013 21.6 1.5 16 84-99 3-18 (64)
449 PF07282 OrfB_Zn_ribbon: Putat 21.7 73 0.0016 21.9 2.0 32 145-178 28-59 (69)
450 COG2846 Regulator of cell morp 21.3 1.9E+02 0.0041 25.0 4.6 35 294-328 95-129 (221)
451 PF08238 Sel1: Sel1 repeat; I 21.3 1.8E+02 0.0039 16.7 3.6 13 287-299 24-36 (39)
452 cd00350 rubredoxin_like Rubred 20.9 72 0.0016 18.6 1.5 12 164-175 16-27 (33)
453 KOG1464 COP9 signalosome, subu 20.3 6.8E+02 0.015 23.0 9.3 106 198-309 76-183 (440)
454 PRK00420 hypothetical protein; 20.1 4.3E+02 0.0092 20.6 7.4 29 145-176 23-51 (112)
455 PF01780 Ribosomal_L37ae: Ribo 20.0 93 0.002 23.2 2.2 29 145-175 35-63 (90)
456 PF01957 NfeD: NfeD-like C-ter 20.0 1.4E+02 0.0031 23.5 3.6 34 71-104 102-135 (144)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.87 E-value=1.2e-20 Score=184.67 Aligned_cols=286 Identities=28% Similarity=0.421 Sum_probs=218.3
Q ss_pred CHHHHHHHHHHHhccccccccCCCC----ceeeEecccccccccCCccCcEEEEeCCEEEEEeccccCCCC-eEEEeecC
Q 019809 29 SINEIAENFSKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EVLISYIE 103 (335)
Q Consensus 29 ~~~~~~~~~~~~~~N~~~~~~~~~~----~~g~~~~~~~s~~nHsC~pn~~~~~~~~~~~~~a~~~i~~g~-el~~~Y~~ 103 (335)
..+....++..+..|++++.+.... .+|.|+||..+++||||.||+...|+++...+++...+.+++ |++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 247 (482)
T KOG2084|consen 168 AADCISKLFPSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTD 247 (482)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecc
Confidence 3455667888888899988887665 499999999999999999999999999999999999998887 99999999
Q ss_pred CCCCHHHHHHHHhccCCeEEeccccCCcccCCcchhhhhhhcCccCCCCCCcceecCCCC---CccccCcCCCCCcHHHH
Q 019809 104 TAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDD---KGFTCQQCGLVRSKEEI 180 (335)
Q Consensus 104 ~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~---~~~~C~~C~~~~~~~~~ 180 (335)
..+++..|+..|+..|.|.|.|++|.+++ +...+..+++|..++|.+.+.+.... ..|.|..|........+
T Consensus 248 ~~~~~~~r~~~l~~~~~f~c~c~rc~d~~-----~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 322 (482)
T KOG2084|consen 248 PLLSTASRQKQLRQSKLFSCQCPRCLDPT-----ELGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYV 322 (482)
T ss_pred cccCHHHHHHHHhhccceeeecCCCCCCC-----ccccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHH
Confidence 99999999999999999999999999864 23456678899998998776655433 58999999998877666
Q ss_pred HHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH----------hchhHHHHHH
Q 019809 181 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM----------ELEDWKEALA 250 (335)
Q Consensus 181 ~~~~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~----------~~~~~~~Al~ 250 (335)
.......... ..... . . ....+.+...+....++.+.........+..++. ....+..+..
T Consensus 323 ~~~~~~~~~~--~~~~~-~--~----~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 393 (482)
T KOG2084|consen 323 VESREELQNE--LLDAF-S--D----LLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAELERLLN 393 (482)
T ss_pred HHHHHHHHhh--ccccC-C--h----hhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHH
Confidence 5555444322 01111 1 1 1111222333344566666554444444333332 2245566777
Q ss_pred HH--HHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcc
Q 019809 251 YC--QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 251 ~~--~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~ 328 (335)
++ ...+.+++.+.|..++..+...+.++.....+++...++........++....+.+++...+....+........+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (482)
T KOG2084|consen 394 LFECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEEQELEEERSEEGP 473 (482)
T ss_pred hhhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhh
Confidence 76 8899999999999999999999999999999888889999999999999999999999888888777766554443
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.47 E-value=1.9e-12 Score=125.50 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=128.7
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
.|..+...+++.+|+.+|++++.+...++|+.|+.++.++.+|+.+|...|+|++|..+|+++++++++.++..||.++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 56666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcc
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~ 328 (335)
.+.+++.++...+++++|..++++|+.|+...+|++|+.+-.+...|..+...++.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999888665544
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=2.6e-12 Score=124.59 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=123.3
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
....+..+..+|+|++|+.+++.+++...+.++-.|+.+..++..++..|+.++++.+|+.++++++.+.+.++|+.||.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 33456667788999999999999999877788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
+|..+.+||.+|...|+++||..++++|++|.+..+|..||.+...+..+..+.
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988777776553
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.45 E-value=3.8e-13 Score=111.38 Aligned_cols=66 Identities=38% Similarity=0.559 Sum_probs=53.1
Q ss_pred HHHHhccccccccCCCCceeeEecccccccccCCccCcEEEEe----CCEEEEEeccccCCCCeEEEeec
Q 019809 37 FSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEVLISYI 102 (335)
Q Consensus 37 ~~~~~~N~~~~~~~~~~~~g~~~~~~~s~~nHsC~pn~~~~~~----~~~~~~~a~~~i~~g~el~~~Y~ 102 (335)
...................+.++||.++++||||.|||.+.|+ ++.+.++|.++|++||||+|||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 93 ISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp HHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 3334444444444555678999999999999999999999998 78999999999999999999996
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.25 E-value=4.5e-11 Score=87.46 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
|+.++.++.+++.+|..+|+|++|+.++++++++ .+.+|+.||.++..+++||.++..+|++++|++++++|++|.+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6788999999999999999999999999999999 88889999999999999999999999999999999999999863
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.12 E-value=4.4e-11 Score=93.90 Aligned_cols=45 Identities=33% Similarity=0.512 Sum_probs=39.9
Q ss_pred eEecccccccccCCccCcEEEEeCC----EEEEEeccccCCCCeEEEee
Q 019809 57 TGLYPVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISY 101 (335)
Q Consensus 57 ~~~~~~~s~~nHsC~pn~~~~~~~~----~~~~~a~~~i~~g~el~~~Y 101 (335)
..++|.++++||||.||+.+.+... .+.++|+|+|++||||+++|
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 4478999999999999999876532 59999999999999999998
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.94 E-value=8.5e-10 Score=99.77 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=65.1
Q ss_pred HHHhccccccccCCCCceeeEecc-cccccccCCccCcEEEEeC-CEEEEEeccccCCCCeEEEeecCCCCCHHHHHHHH
Q 019809 38 SKLACNAHTICNSELRPLGTGLYP-VISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKAL 115 (335)
Q Consensus 38 ~~~~~N~~~~~~~~~~~~g~~~~~-~~s~~nHsC~pn~~~~~~~-~~~~~~a~~~i~~g~el~~~Y~~~~~~~~~R~~~L 115 (335)
.+-.-|-|+|.-+....- .-||. .++++||+|.|||.++-.| +++.|+++|||+||||||.-|++.+..
T Consensus 172 l~~g~nDFSvmyStRk~c-aqLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG-------- 242 (453)
T KOG2589|consen 172 LRGGGNDFSVMYSTRKRC-AQLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFG-------- 242 (453)
T ss_pred HhccCCceeeeeecccch-hhheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccC--------
Confidence 333458888876543322 33555 4689999999999988777 799999999999999999999987755
Q ss_pred hccCCeEEeccccCCcc
Q 019809 116 KEQYLFTCTCPRCIKLG 132 (335)
Q Consensus 116 ~~~~~F~C~C~~C~~~~ 132 (335)
...-.|.|..|...+
T Consensus 243 --~~N~~CeC~TCER~g 257 (453)
T KOG2589|consen 243 --ENNEECECVTCERRG 257 (453)
T ss_pred --CCCceeEEeeccccc
Confidence 334589999999863
No 8
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=3.6e-07 Score=76.95 Aligned_cols=127 Identities=16% Similarity=0.035 Sum_probs=100.4
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 266 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~ 266 (335)
.......+......|++++|+..+++++.+ .+.+.....++.+++.++...|++++|+.++++++.+. ..++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~ 108 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQA 108 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHH
Confidence 344455666677889999999999998765 23444556688999999999999999999999999763 233445
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHH
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 319 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l 319 (335)
+..+|..+.++|..+..+|++++|+..+.+|+.+++..+|.+++.+.++..-+
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~ 161 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL 161 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 66777777778877779999999999999999999999999997666555443
No 9
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=1.2e-06 Score=68.45 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=92.4
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
..+..+..+...|++++|...+..+... +|.+.....++..++.++...|++++|+.+++.++... +.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSP 73 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCC
Confidence 4455666677889999999999888653 45565556777889999999999999999999887532 4666
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHH
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 318 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~ 318 (335)
.....++.+|.++..+|++++|..++.++++. .|+++.+.+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~ 118 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQKR 118 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHhc
Confidence 66777899999999999999999999999886 5788877766543
No 10
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=5.8e-06 Score=74.14 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCC
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 265 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~ 265 (335)
+.+.+-.+..+++..++|++|+..|.++++ +.|.++.+. -+=+.+|.++|.++.|++-|+.++.
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyy---cNRAAAy~~Lg~~~~AVkDce~Al~-------- 143 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYY---CNRAAAYSKLGEYEDAVKDCESALS-------- 143 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHH---HHHHHHHHHhcchHHHHHHHHHHHh--------
Confidence 444555666677788999999999999876 577787664 3456789999999999999999886
Q ss_pred CChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 266 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 266 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
..|...-.|-+||.++..+|++++|+..|++|++| -|+.+.+++-++..+.-.
T Consensus 144 iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 144 IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNLKIAEQKL 196 (304)
T ss_pred cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999984 677776665555444443
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.41 E-value=4.1e-07 Score=57.63 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChh
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 311 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~ 311 (335)
++..+.+||.++..+|++++|+.++++|+.+.+..+|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999993
No 12
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.39 E-value=7.5e-07 Score=64.80 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL 330 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~~~ 330 (335)
||.++..++++|.++..+|++++|++++++|+++ ...+|++||.+..+...+..+...+....
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 63 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYE 63 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 8999999999999999999999999999999999 88889999999999999988876665443
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=2e-05 Score=64.65 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=91.5
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
....+..+...|++++|...+..++.+ .|.+ ..++..++.++...|++++|+..+.+++.. .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA-----QPWS---WRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 444566777889999999999887653 3444 456778999999999999999999998863 234
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
-+..++++|..+...|++++|+..|.+|+. ..|+++.+..+.........+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHH
Confidence 446689999999999999999999999977 568888888777766655544
No 14
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=4.2e-05 Score=62.98 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC
Q 019809 185 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 264 (335)
Q Consensus 185 ~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p 264 (335)
+.+..++..+-.+...|++++|..+|+.+.. +.|.+. ....+|+.++..+|+|++|+..+.+++. +.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-----~Dp~~~---~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~ 99 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTI-----YDAWSF---DYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IK 99 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cC
Confidence 4567778888889999999999999987754 444443 3467899999999999999999888775 34
Q ss_pred CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhc
Q 019809 265 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 327 (335)
Q Consensus 265 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~ 327 (335)
+++| ..++++|..+...|+.++|++.|+.|+.+.. ++|...++.++.+.....|.
T Consensus 100 ~ddp---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 100 IDAP---QAPWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred CCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHhh
Confidence 5666 4579999999999999999999999998762 67888888888877766554
No 15
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.30 E-value=1.2e-05 Score=67.98 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 266 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~ 266 (335)
.......+..+...|++++|...++++++.. +.+.....+..+++.++...|++++|+.++.+++...... +..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 108 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSA 108 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHH
Confidence 3345566666778899999999999887653 2222335677889999999999999999999988753211 112
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
+..+|..+..+|.....++++++|+..+.+|+++++...+.++.-+.++..-+..+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence 22344455555555555677899999999999999999998888888877766554
No 16
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.26 E-value=3.6e-06 Score=87.99 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=110.8
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 276 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~ 276 (335)
...+|.+.++.+ .-+.+.+...+++..|+.+...+..|+..+...++.++|+.+++++.-+.+++.|.+||.+...+.+
T Consensus 942 ~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 942 ALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 345667777776 5556667777888889999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 277 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 277 La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
|+...+..++...|...+.+|..++...+|++||.+.-+..+++.+
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence 9999999999999999999999999999999999887775555555
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=4.1e-05 Score=72.44 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=88.0
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
+...|......|++++|+..|.+++.+ .|.+. .++.+++.++..+|++++|+..+.+++.+. |.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~---~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNNA---ELYADRAQANIKLGNFTEAVADANKAIELD--------PS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cC
Confidence 445667777889999999999998764 44443 456788999999999999999999988742 33
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 321 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~ 321 (335)
.+..++++|.++..+|++++|+..|++|+.+ .|+++.....+..+..
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999999874 5777776665555533
No 18
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.20 E-value=4.4e-05 Score=69.01 Aligned_cols=115 Identities=15% Similarity=0.121 Sum_probs=92.1
Q ss_pred HHHHHhh-hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 191 SKKTLAL-TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 191 ~~~a~~~-~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
++.|..+ ...|+|++|+..|+.+++ .+|.+.....++..++.+|...|++++|+.+++.++..+ +.||.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~-----~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~ 215 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK-----KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPK 215 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcc
Confidence 4444444 456899999999988876 367777777889999999999999999999988777543 58899
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 320 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~ 320 (335)
....++++|.++..+|+.++|...|++.+... |+++........|.
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL~ 261 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRLN 261 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHHh
Confidence 99999999999999999999999999886632 55666666666553
No 19
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.14 E-value=4.6e-06 Score=52.67 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 228 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 228 l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
++.++.+|+.+|...|++++|+.++++++.+.++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 356788999999999999999999999999999999999995
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=0.00013 Score=58.58 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=85.4
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
++..+..+...|++++|...++.+... +|.+ ..+...++.++...|++++|..++.+++.. +|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~ 83 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DPD 83 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCC
Confidence 444556667788999999998887653 3444 345677899999999999999998887763 244
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
....++.+|.++...|++++|+.++++++.. .|+.+....+...+.++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKERAEAM 131 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHHHHHH
Confidence 4566788999999999999999999999885 46666666666655443
No 21
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=3.5e-06 Score=82.72 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=41.9
Q ss_pred cCCCCceeeEeccccc-ccccCCccCcEE---EEeC-CEEEEEeccccCCCCeEEEeecCCC
Q 019809 49 NSELRPLGTGLYPVIS-IINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYIETA 105 (335)
Q Consensus 49 ~~~~~~~g~~~~~~~s-~~nHsC~pn~~~---~~~~-~~~~~~a~~~i~~g~el~~~Y~~~~ 105 (335)
......|....+-..| ++||||+|||.+ +..| .++=++|.+.|++|||||..|-...
T Consensus 179 L~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~r 240 (729)
T KOG4442|consen 179 LQGGEYIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDR 240 (729)
T ss_pred ecCCceecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccc
Confidence 3334456666777666 679999999965 3333 2577899999999999999995443
No 22
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.05 E-value=0.00017 Score=63.22 Aligned_cols=135 Identities=16% Similarity=0.267 Sum_probs=95.4
Q ss_pred CccccCcCCCCCcHHHHH--------HHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHH
Q 019809 164 KGFTCQQCGLVRSKEEIK--------KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKL 235 (335)
Q Consensus 164 ~~~~C~~C~~~~~~~~~~--------~~~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L 235 (335)
..|.|++||......... .+...+...+. ...+....++++|+..|.-++-. ..+.+..+...+.+...+
T Consensus 47 ~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~-~~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~Lrl 124 (214)
T PF09986_consen 47 EVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRWK-PRDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRL 124 (214)
T ss_pred eEEECCCCCCcccccccccCCHHHHHHHHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence 358999999765443332 22222222221 11334445788999888776543 334566667788888889
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhcC-CCCh----HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 236 IKILMELEDWKEALAYCQLTIPVYQRVYP-QFHP----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 236 ~~~~~~~~~~~~Al~~~~~~l~~~~~~~p-~~hp----~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
|=+|...++-+....+++++++.++..|- ...| .-...++-+|.+....|++++|.+++.+.+..
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999988888999999998887764 2222 33567888999999999999999999988763
No 23
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=98.05 E-value=2.1e-06 Score=84.37 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=58.0
Q ss_pred cccccccCCccCcEEEEeCC----EEEEEeccccCCCCeEEEeecCCCCCHHHHHHHHhccCCeEEeccccCC
Q 019809 62 VISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIK 130 (335)
Q Consensus 62 ~~s~~nHsC~pn~~~~~~~~----~~~~~a~~~i~~g~el~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~ 130 (335)
...++||||.||+.....+. .+.++|++||.+||||++.|.........+...+...+...|.|.+|..
T Consensus 405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (480)
T COG2940 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSH 477 (480)
T ss_pred ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCC
Confidence 34589999999999876543 7889999999999999999987776555456777888999999999987
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.02 E-value=4.8e-05 Score=74.22 Aligned_cols=94 Identities=22% Similarity=0.239 Sum_probs=77.3
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
.+.|..+.+.|+..+|+..|.+++.+ -|+| ++++++|+.+|+++|.+++|..+++++++++ |..
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l-----~p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~ 387 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRL-----CPNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEF 387 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhh
Confidence 44566677788888999888888775 3334 5678899999999999999999999888743 667
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+-...+||.++..+|++++|+..|++|+.|
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 778899999999999999999999998876
No 25
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.97 E-value=0.00046 Score=61.74 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=92.9
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
..+..+......|++++|+..++.+.. .+|.......+...++.++...+++++|+.++++.+..+ |.||
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~ 103 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP 103 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCC
Confidence 356677777889999999999998865 467777777888899999999999999999999877633 5899
Q ss_pred HHHHHHHHHhHHHHhcC---------------ChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhc
Q 019809 269 LLGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 327 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g---------------~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~ 327 (335)
.+..+++.+|..+..++ +...+.+.+..--.+++. | |+++...+...+|..++..|.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-y-P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-Y-PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-C-cCChhHHHHHHHHHHHHHHHH
Confidence 99999999998764443 112222222222222222 2 478888888888888865543
No 26
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.96 E-value=0.00018 Score=63.64 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=87.6
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCC
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 267 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~h 267 (335)
..++..+..+...|++++|...++++.. ..|.++....++..++.++...|++++|+..+.+++.. +| .+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~p-~~ 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALES-----RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----HP-NH 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----Cc-CC
Confidence 3456667777788999999999888765 35667767778889999999999999999999988853 33 56
Q ss_pred hHHHHHHHHHhHHHHhc--------CChHHHHHHHHHHHHhhhhhcCCCChhHHHHHH
Q 019809 268 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELIL 317 (335)
Q Consensus 268 p~~~~~l~~La~l~~~~--------g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~ 317 (335)
|.....++.+|.++... |++++|+..+.+++.. -|+++...+...
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~ 156 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKK 156 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHH
Confidence 66666788888888765 7788899998888754 455655544443
No 27
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.93 E-value=0.00026 Score=57.35 Aligned_cols=88 Identities=20% Similarity=0.250 Sum_probs=72.9
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
.+...|......|+|.+|+..++.+.. -+|.....-.+...|+.+|...++|++|+.-+.+.+. +.|.||
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~-----ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDT-----RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCC
Confidence 466677778889999999998887754 3566666678888999999999999999998887765 457999
Q ss_pred HHHHHHHHHhHHHHhcCC
Q 019809 269 LLGLQYYTCGKLEWFLGD 286 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~ 286 (335)
.+..+++..|..+..+..
T Consensus 82 ~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CccHHHHHHHHHHHHHhh
Confidence 999999999999887754
No 28
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.92 E-value=0.00048 Score=59.88 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 266 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~ 266 (335)
...++..+......|++.+|+..++.+... .|.+.....+...++.++...|+|.+|+..+++.+.. || .
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~----yP-~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL----YP-N 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CC-C
Confidence 356778888889999999999999988653 6778888899999999999999999999988887753 44 7
Q ss_pred ChHHHHHHHHHhHHHHhcCChH----HHHHHHHHHHHhhhh--hcCCCChhHHHHHHHHHHHHHHhc
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTE----NAIKSMTEAVEILRI--THGTNSPFMKELILKLEEAQAEAS 327 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~----eA~~~l~~A~~il~~--~~G~~hp~~~~l~~~l~~~~~el~ 327 (335)
||.+..+++.+|..+..+.+-. .=.....+|+..++. .-=|+++...+...+|.+++..|.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 8888899999999876542111 111222333332222 124789999999988888866543
No 29
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=0.00011 Score=51.75 Aligned_cols=63 Identities=29% Similarity=0.442 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcC-ChHHHHHHHHHHHHh
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI 300 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~~A~~i 300 (335)
.+...++..+...++|++|+.++.++++. +|.-+..++++|.++..+| ++++|+..+.+|+++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 44667888999999999999999999985 3445568999999999999 799999999999875
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.87 E-value=0.00013 Score=71.28 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCC
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 265 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~ 265 (335)
...++.+.+....++|++++|..+|++++.. .+....+..+|+.+|..+|++++|+..++.++.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------- 417 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------- 417 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-------
Confidence 3455666677778889999999999888764 4556777889999999999999999999988864
Q ss_pred CChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 266 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 266 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
.|..|.++.++|..+-.+|+..+|+..|.+|+.| .|-+.+...+|..+.
T Consensus 418 -~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 418 -KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIY 466 (966)
T ss_pred -CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHh
Confidence 4777888888888888888888888888888775 344444445554443
No 31
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=97.84 E-value=1.2e-05 Score=83.65 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=35.5
Q ss_pred ccccccCCccCcEEEE---eCC-EEEEEeccccCCCCeEEEeecCCC
Q 019809 63 ISIINHSCLPNAVLVF---EGR-LAVVRAVQHVPKGAEVLISYIETA 105 (335)
Q Consensus 63 ~s~~nHsC~pn~~~~~---~~~-~~~~~a~~~i~~g~el~~~Y~~~~ 105 (335)
+.+|||||.|||..-. +|. +++|.|.|+|.+|||||..|-...
T Consensus 940 Ar~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~ 986 (1005)
T KOG1080|consen 940 ARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPT 986 (1005)
T ss_pred hheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccc
Confidence 5689999999997532 343 799999999999999999996544
No 32
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.84 E-value=9.6e-05 Score=54.49 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhH
Q 019809 200 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 279 (335)
Q Consensus 200 ~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~ 279 (335)
+|++++|+..++++...... +. -......++.++...|+|++|+.++++ +..- | .++ ...+-+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~----~-~~~---~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD----P-SNP---DIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH----H-CHH---HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC----C-CCH---HHHHHHHH
Confidence 57899999999998775422 22 223455689999999999999999887 2221 1 222 33445599
Q ss_pred HHHhcCChHHHHHHHHHH
Q 019809 280 LEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 280 l~~~~g~~~eA~~~l~~A 297 (335)
.+..+|++++|++.|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999986
No 33
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.00047 Score=56.44 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=55.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
..|......|++++|...++.+.... +.......++..|+.++...|++++|+..+.. ....+..+
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~~ 118 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAFKA 118 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchHH
Confidence 34455556677777777776665421 22222233455577777777777777665432 12233344
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAV 298 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~ 298 (335)
.....+|.++...|++++|+..|++|+
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 555667777777777777777777664
No 34
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.00064 Score=62.19 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=93.9
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
.+..+...+++++|...|.++.....+ .+ +.......+...+.+|... ++++|+.+++++++++.. .+.....|.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~--~G~~~~aA~ 115 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEK-LG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE--AGRFSQAAK 115 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH--CT-HHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh--cCcHHHHHH
Confidence 344455778999999999998877655 22 2334566777777777666 999999999999998863 234455678
Q ss_pred HHHHHhHHHHhc-CChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhccc
Q 019809 273 QYYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 329 (335)
Q Consensus 273 ~l~~La~l~~~~-g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~~ 329 (335)
.+.++|.++... |++++|+++|++|+++++.. | ......++..++.++...+...
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~-~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-G-SPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-C-ChhhHHHHHHHHHHHHHHhCCH
Confidence 999999999998 99999999999999999987 3 3334566777777776555543
No 35
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.71 E-value=0.00025 Score=49.33 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=50.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 234 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 234 ~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.++..+...|+|++|++.+++++. .+|.-...++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467789999999999999888775 34777788999999999999999999999999864
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.68 E-value=0.0011 Score=56.97 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=48.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
..+..+...|++++|...+++++.. +|.+ ..+...++.++...|++++|++++++++.. .| .+ .
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~-~~---~ 99 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEH-----DPDD---YLAYLALALYYQQLGELEKAEDSFRRALTL----NP-NN---G 99 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CC-CC---H
Confidence 3344445566666666666655432 2222 233445566666666666666666655542 11 11 2
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..++++|.++...|++++|+.++.+++.
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3445555555555555555555555554
No 37
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0038 Score=51.00 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 266 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~ 266 (335)
....+..+......++...+...++.+... +|.++.-..+...++..+...|++++|...++.++.. .++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d 80 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD 80 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC
Confidence 444555555555677887776666665442 5556566677788999999999999999999887762 244
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHH
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 296 (335)
.....+..++||.++..+|++++|+..|..
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566678899999999999999999998855
No 38
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.0024 Score=50.56 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=76.1
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
.++.|......|+.++|+.+|++++.. +.......++.-.++..+..+|++++|+...+..+. -+|...-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~~- 73 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDEL- 73 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCccc-
Confidence 466777888999999999999999762 334445567788899999999999999999887764 2343221
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.+-....++..+..+|+.+||+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222334577788999999999998877765
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0012 Score=57.38 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=66.2
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCC
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 267 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~h 267 (335)
...+..+......|++..|..-++++++. .+....+...++..|...|+.+.|-+.+++++. .+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--------l~ 99 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--------LA 99 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--------cC
Confidence 34456677778889999888888887763 233344556677778888888888888887775 34
Q ss_pred hHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 268 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 268 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
|.-|..++|-|-.+..+|++++|..+|.+|+.
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 55566666666666666666666666666654
No 40
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.52 E-value=0.00042 Score=49.31 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=58.1
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHH
Q 019809 236 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 315 (335)
Q Consensus 236 ~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l 315 (335)
..+|...++|++|++++.+++.. +|.-...++..|.++..+|++.+|+..+.+++ ..+|+++....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-----~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERAL-----ELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHH-----HHCCCcHHHHHH
Confidence 46788999999999999988874 34455667889999999999999999999999 456788777666
Q ss_pred HHHH
Q 019809 316 ILKL 319 (335)
Q Consensus 316 ~~~l 319 (335)
..+|
T Consensus 69 ~a~l 72 (73)
T PF13371_consen 69 RAML 72 (73)
T ss_pred HHhc
Confidence 6554
No 41
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.001 Score=59.31 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=86.6
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
+++.|-.+...|+|.+|...|...++ -.|+...+..+++.|++++..+|+++.|...+..++. -| +.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~-----~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~~-P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIK-----KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----DY-PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----hC-CCCCC
Confidence 67778888889999999999888765 3678888899999999999999999999998887665 23 47777
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..-.+++||.....+|+.++|...|++.+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 778899999999999999999999988766
No 42
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.51 E-value=0.0013 Score=47.23 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=69.4
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
.+..+...|++++|+..++.+.+. .|.+. .+...++.++...+++++|+.++..++.. .| .++ .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~---~ 69 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL-----DPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL----DP-DNA---K 69 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc-----CCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC-cch---h
Confidence 344455678899999988877653 23332 45677888999999999999998887763 22 222 5
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.++.+|.++...|++++|..++.+++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 6788999999999999999999988764
No 43
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0037 Score=58.65 Aligned_cols=107 Identities=14% Similarity=0.213 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhh--cccCCCC-----hhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQK--KLYHPFS-----VNLMQTREKLIKILMELEDWKEALAYCQLTIPV 258 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~--~~l~~~h-----~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~ 258 (335)
.....-+.+..+...|+|..|...|+++..... ..+.+.- .....++.||+.++..+++|.+|+..|.++|.
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe- 285 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE- 285 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 334445566677888999999999999876432 2222221 12245678899999999999999999999887
Q ss_pred HHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 259 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 259 ~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
..+.++ -++|+-|+++..+|+++.|+..|++|+.+
T Consensus 286 ----~~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 286 ----LDPNNV---KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred ----cCCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 334444 56899999999999999999999999873
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.47 E-value=0.0053 Score=54.14 Aligned_cols=124 Identities=19% Similarity=0.098 Sum_probs=87.4
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhc--------hhHHHHHHHHHHHHHHHHHh
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQRV 262 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~--------~~~~~Al~~~~~~l~~~~~~ 262 (335)
...+..+...|++++|+..++++++. .|.++....+...++.++... |++++|++.+.+++..
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---- 144 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---- 144 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----
Confidence 44556667889999999999988763 566666666677777777654 8899999998887753
Q ss_pred cCCCChHHH--------------HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcc
Q 019809 263 YPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 263 ~p~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~ 328 (335)
+| .++... ...+.+|.++...|++.+|+..++++++. -|++|...+..-.+..+...++.
T Consensus 145 ~p-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 145 YP-NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred CC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCC
Confidence 33 222221 12347788899999999999999999875 34456666666666666655554
Q ss_pred c
Q 019809 329 K 329 (335)
Q Consensus 329 ~ 329 (335)
.
T Consensus 219 ~ 219 (235)
T TIGR03302 219 K 219 (235)
T ss_pred H
Confidence 3
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.44 E-value=0.0056 Score=52.61 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=64.7
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 273 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~ 273 (335)
+..+...|++++|...+++++... .+.........++.++...|++++|..++.+++.. .| .++ ..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~---~~ 171 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI----DP-QRP---ES 171 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cc-CCh---HH
Confidence 334456677888887777765421 12222344566778888888888888888887753 22 233 35
Q ss_pred HHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 274 YYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+..+|.++...|++++|+.++++++.+
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678889999999999999999998886
No 46
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.00092 Score=56.07 Aligned_cols=67 Identities=15% Similarity=-0.010 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
...+..++..+...|++++|+.++++++.+. +.++..+..++++|.++...|++++|+..+++|+.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556778888999999999999999988762 356667789999999999999999999999999987
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.43 E-value=0.0021 Score=59.26 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=79.8
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
..+..+..+...|++++|+..|.+++++ .|.+ ..++..++.++...|++++|+..+.+++++ .|
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P 129 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALAL-----RPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DP 129 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC
Confidence 3455666677889999999998888763 4444 456788999999999999999999988863 23
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCCh
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 310 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp 310 (335)
.....++++|.++...|++++|+..+++++.+ .|++|
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~ 166 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDP 166 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence 33456889999999999999999999999874 45555
No 48
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.39 E-value=0.0016 Score=50.45 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCC
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 309 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~h 309 (335)
+++..++..+...|++++|+.++.+++.. + +.++.....++.+|.++...|++++|+.++++++.. .|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK----Y-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 34567888899999999999999888753 2 456666778899999999999999999999999864 3566
Q ss_pred hhHHHHHHHHHHHHH
Q 019809 310 PFMKELILKLEEAQA 324 (335)
Q Consensus 310 p~~~~l~~~l~~~~~ 324 (335)
+....+...+..+..
T Consensus 73 ~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 73 PKAPDALLKLGMSLQ 87 (119)
T ss_pred CcccHHHHHHHHHHH
Confidence 544444444444433
No 49
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.011 Score=48.04 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=78.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCC----C----------hhHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF----S----------VNLMQTREKLIKILMELEDWKEALAYCQL 254 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~----h----------~~l~~~~~~L~~~~~~~~~~~~Al~~~~~ 254 (335)
.+...+......++...+...+++++.+.+.-+-+. . .....+...++..+...|++++|+.++++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 334444444455677778888888877654322211 1 12233455566677788999999999998
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCC-ChhHHHHHHHH
Q 019809 255 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILKL 319 (335)
Q Consensus 255 ~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~-hp~~~~l~~~l 319 (335)
++.. +|.--..+..|-.++...|+..+|...|.+....+...+|-+ +|.+..+.+.|
T Consensus 88 ~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 88 ALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 8763 233334456667788899999999999999999999999965 55666665543
No 50
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.31 E-value=0.0012 Score=63.01 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=63.1
Q ss_pred CChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 224 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 224 ~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.++.....+.+++.+|...|++++|+..+++++++ .++++.....++++|..|..+|++++|+..|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566778899999999999999999999999875 3566666678999999999999999999999999997
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.30 E-value=0.0039 Score=63.44 Aligned_cols=87 Identities=21% Similarity=0.262 Sum_probs=50.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 277 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~L 277 (335)
...|++++|+..+++++.+ .|. ...++..++.++...|++++|+.++.++++. .+.+| ..++.+
T Consensus 342 ~~~g~~~eA~~~~~kal~l-----~P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~l 405 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIEL-----DPR---VTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP---DIYYHR 405 (615)
T ss_pred HHcCCHHHHHHHHHHHHHc-----CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Confidence 3456777777776666543 222 2334445566666666666666666666543 12222 345666
Q ss_pred hHHHHhcCChHHHHHHHHHHHHh
Q 019809 278 GKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 278 a~l~~~~g~~~eA~~~l~~A~~i 300 (335)
|.++...|++++|+..|++|+.+
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666553
No 52
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.29 E-value=0.015 Score=51.55 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=94.9
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCC
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 267 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~h 267 (335)
..+.+++......|++.+|...++.+.. -||..+..-+++..++.++.+.++++.|+.+..+.+ ++|| .|
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi----~lyP-~~ 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI----RLYP-TH 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH----HhCC-CC
Confidence 4566777777788999999999988763 477777777888889999999999999988866544 4555 89
Q ss_pred hHHHHHHHHHhHHHHhc-----CChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhc
Q 019809 268 PLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 327 (335)
Q Consensus 268 p~~~~~l~~La~l~~~~-----g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~ 327 (335)
|.....++-.|..+... .+...++..+....+.+.+- |+++++.+...++..++..|-
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHH
Confidence 99999999888887653 23344444454444444444 688889888888877765443
No 53
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.28 E-value=0.0034 Score=66.44 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=102.7
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHH
Q 019809 202 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 281 (335)
Q Consensus 202 ~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~ 281 (335)
+...|...+.++..+..-.+++.|+.++.+-.++..++...++++.|+++.+.++...++++|+.+-.++..+..+|.+.
T Consensus 1030 ~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~ 1109 (1236)
T KOG1839|consen 1030 NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLF 1109 (1236)
T ss_pred CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHH
Confidence 44455555666666666678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHH
Q 019809 282 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 317 (335)
Q Consensus 282 ~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~ 317 (335)
...+.+..|....+.++.|+...+|++|+-+++-.+
T Consensus 1110 ~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~ 1145 (1236)
T KOG1839|consen 1110 ESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSE 1145 (1236)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHH
Confidence 999999999999999999999999999998887443
No 54
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.25 E-value=0.0054 Score=62.38 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
..+..+...|++++|+..+++++.. .|.++ .++..++.++...|++++|+.++++++.. .|...
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~ 433 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKL-----NSEDP---DIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFI 433 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCH
Confidence 3444455666777777777766543 34443 33455666667777777777776666543 12222
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..++++|.++..+|++++|+..+.+|+.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555555555555555555555554
No 55
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.20 E-value=0.0063 Score=55.66 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=77.2
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHhcCCCChHH-
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL- 270 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~-~~~~~Al~~~~~~l~~~~~~~p~~hp~~- 270 (335)
.+.......++++|+..++++..+.... ......+.+...++.+|... +++++|+++++++++.++.-- .+..
T Consensus 80 ~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---~~~~a 154 (282)
T PF14938_consen 80 EAANCYKKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---SPHSA 154 (282)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---ChhhH
Confidence 3444445558899999999988765432 12234467888999999988 999999999999999987542 4444
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
...+.++|.++..+|++++|.+.|++.....
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4577799999999999999999999987754
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.19 E-value=0.0052 Score=51.71 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+......+..++..+...|++++|+.++++++... +.++..+..++++|.++..+|++++|+.++.+|+.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456677889999999999999999999988753 234455678999999999999999999999999986
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.19 E-value=0.01 Score=56.39 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCC-CChHHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-FHPLLGL 272 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~-~hp~~~~ 272 (335)
+..+...|++++|...++++.+. .| .-..++..++.++...|+|++|++.+..++.. .|. .+...+.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~-----~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 181 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE-----GD---FAEGALQQLLEIYQQEKDWQKAIDVAERLEKL----GGDSLRVEIAH 181 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC-----Cc---chHHHHHHHHHHHHHhchHHHHHHHHHHHHHh----cCCcchHHHHH
Confidence 44445566777777766665432 12 22344556666677777777777766665432 121 1222344
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.+..+|.++...|++++|+.++.+++++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 4556666666666777776666666553
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.18 E-value=0.015 Score=50.33 Aligned_cols=110 Identities=9% Similarity=0.054 Sum_probs=77.7
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHH-Hhchh--HHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELED--WKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~-~~~~~--~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
.+..+...|++++|+..|+++.++ .|.+..+ +..++.++ ...|+ .++|.+.+++++.. .+.+
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~---~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~-- 143 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQL-----RGENAEL---YAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE-- 143 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC--
Confidence 344556788999999999988763 4555444 55677754 56676 48999888887752 2333
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
...++.||..+...|++++|+.+++++++.. +++.+-.. +++.++.++
T Consensus 144 -~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~~-~i~~i~~a~ 191 (198)
T PRK10370 144 -VTALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRTQ-LVESINMAK 191 (198)
T ss_pred -hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHHH-HHHHHHHHH
Confidence 3578999999999999999999999998754 34444433 336665554
No 59
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0013 Score=45.92 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=49.7
Q ss_pred HhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHH
Q 019809 240 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 319 (335)
Q Consensus 240 ~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l 319 (335)
+..|+|++|++++++++.. +|.-...++.||.++...|++++|+..+.+++.. .|++|.+..++.+|
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-----DPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-----GTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCHHHHHHHHhcC
Confidence 4679999999999988863 2334455678999999999999999998887652 44557666665543
No 60
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.12 E-value=0.011 Score=56.13 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=60.7
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCC-hHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PLLG 271 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~h-p~~~ 271 (335)
.+......|++++|+..++++++. .|.+ ..++..++.++...|++++|+.+++.++. .|... ....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~ 107 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV-----DPET---VELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTREQRL 107 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCHHHHH
Confidence 344455667777787777777653 3333 34456677777778888888777776554 12222 2234
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
..+..||.++...|++++|+.++.++++.
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 56677777777777777777777777653
No 61
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.11 E-value=0.012 Score=60.30 Aligned_cols=117 Identities=12% Similarity=0.034 Sum_probs=79.3
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
...+..+...|++++|+..+++++.+ .|.+.. ++..++.++...|++++|+..+++++.. +|..
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~---a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~ 351 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPY---VRAMYARALRQVGQYTAASDEFVQLARE--------KGVT 351 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cccc
Confidence 34455566778888888888877653 455543 4566788888889999998888776652 2333
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHh
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 326 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el 326 (335)
......+|.++...|++++|+..|++++.+--..+. +.+.+....+.+....+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQISAV 404 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHHhc
Confidence 334555678888889999999999998887555542 23345666665555444
No 62
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.016 Score=49.54 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhH-HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 019809 182 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQ 260 (335)
Q Consensus 182 ~~~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l-~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~ 260 (335)
+...++..+-.....++..|+|++|.+.|..++.+. ++..... .-++.+-+.+.+.++.|+.|+.-|.++|++
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c----p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-- 163 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESC----PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-- 163 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC----ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--
Confidence 334455566667777889999999999999998763 3333322 233456677889999999999999999974
Q ss_pred HhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 261 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 261 ~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.|..--++.+-|.+|-...++++|+.-|++.+++
T Consensus 164 ------~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 ------NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3555556678899999999999999988876653
No 63
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=97.06 E-value=0.00035 Score=66.25 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=39.4
Q ss_pred eeeEeccccc-ccccCCccCcEEEE--eCC------EEEEEeccccCCCCeEEEeecCCCC
Q 019809 55 LGTGLYPVIS-IINHSCLPNAVLVF--EGR------LAVVRAVQHVPKGAEVLISYIETAG 106 (335)
Q Consensus 55 ~g~~~~~~~s-~~nHsC~pn~~~~~--~~~------~~~~~a~~~i~~g~el~~~Y~~~~~ 106 (335)
+....+...+ ++||||.||+.+.. .+. .+.+.|+++|++|+|+|..|+....
T Consensus 264 ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 264 IDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred EchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence 3344455544 78999999998753 332 4788999999999999999986654
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.05 E-value=0.011 Score=63.02 Aligned_cols=92 Identities=10% Similarity=-0.041 Sum_probs=58.5
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 273 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~ 273 (335)
+..+...|++++|+..+++++. +.|.+. .++.+++.++...|++++|+..+++++.. .+.+ +..
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~-----l~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~---~~a 679 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALE-----LEPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG-----LPDD---PAL 679 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHH
Confidence 3334455666666666665544 244444 34566666777777777777777766652 2233 355
Q ss_pred HHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 274 YYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
++++|.++..+|++++|+..|++|+++-
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7788888888888888888888887654
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.05 E-value=0.013 Score=60.22 Aligned_cols=93 Identities=11% Similarity=-0.071 Sum_probs=58.5
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
.+..+...+++++|+..+++++.. .|.+ ...+..++.++..+|++++|.+++++++. .||.-..
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~-----~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~ 189 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSG-----GSSS---AREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFEN 189 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-----CCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHH
Confidence 344444445555555555544431 2222 33455566677777777777776666553 4555556
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
.+..+|.++...|+.++|+..|++|++..
T Consensus 190 ~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 190 GYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 67788888888888888888888887743
No 66
>PRK15331 chaperone protein SicA; Provisional
Probab=97.00 E-value=0.033 Score=46.28 Aligned_cols=116 Identities=10% Similarity=0.169 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC
Q 019809 185 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 264 (335)
Q Consensus 185 ~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p 264 (335)
..+..++..|-.+..+|++++|..+|+-+. ++.+.++.. ...|+.++..+++|++|+..+..+..+-
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----- 101 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLL----- 101 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 356677778888899999999999987663 366666554 4578889999999999999887665432
Q ss_pred CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHH-HHHHHHHH
Q 019809 265 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE-LILKLEEA 322 (335)
Q Consensus 265 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~-l~~~l~~~ 322 (335)
.+.|.. .+.+|.-+..+|+.++|+..|+.|++ .+.|+.+++ ....|+.+
T Consensus 102 ~~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~------~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 102 KNDYRP---VFFTGQCQLLMRKAAKARQCFELVNE------RTEDESLRAKALVYLEAL 151 (165)
T ss_pred cCCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh------CcchHHHHHHHHHHHHHH
Confidence 233322 56788999999999999999999988 355665554 33444443
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.025 Score=51.77 Aligned_cols=134 Identities=14% Similarity=0.166 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC
Q 019809 185 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 264 (335)
Q Consensus 185 ~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p 264 (335)
+.+..+.+.+..++..|-++.|..+|..+... -..--.++..|..+|-...+|++|++..+++..+-..
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q--- 173 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence 44556666777778888888888777665331 1112356778888999999999999887765432211
Q ss_pred CCChHHHHHHHHHhHHHHhc---------------------------CChHHHHHHHHHHHHhhhhhcCCCChhHHHHHH
Q 019809 265 QFHPLLGLQYYTCGKLEWFL---------------------------GDTENAIKSMTEAVEILRITHGTNSPFMKELIL 317 (335)
Q Consensus 265 ~~hp~~~~~l~~La~l~~~~---------------------------g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~ 317 (335)
.+...+|.-+=+||..+... |+..-+...|.+|++.++...-.++.++.++..
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 33344444444555544433 333333334555666777777788889999999
Q ss_pred HHHHHHHHhccc
Q 019809 318 KLEEAQAEASYK 329 (335)
Q Consensus 318 ~l~~~~~el~~~ 329 (335)
+|.++..++...
T Consensus 254 ~L~~~Y~~lg~~ 265 (389)
T COG2956 254 MLYECYAQLGKP 265 (389)
T ss_pred HHHHHHHHhCCH
Confidence 999998887654
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.97 E-value=0.011 Score=60.66 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=74.9
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
...|......|.+++|..+++.++.+ .|.| ..++.+++.++.+.+++++|+..+++++. -.|.-
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~-----~Pd~---~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--------~~p~~ 153 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQR-----FPDS---SEAFILMLRGVKRQQGIEAGRAEIELYFS--------GGSSS 153 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhh-----CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHhh--------cCCCC
Confidence 33444556778999999998888653 3433 56678889999999999999998888775 33556
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+..++.+|.++..+|++++|...|++++.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 67889999999999999999999999986
No 69
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=96.84 E-value=0.0019 Score=63.54 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHhccccccccCC-----CCceeeEecccccccccCCccCcEEEEe-CCEEEEEeccccCCCCeEEEee
Q 019809 28 ISINEIAENFSKLACNAHTICNSE-----LRPLGTGLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEVLISY 101 (335)
Q Consensus 28 ~~~~~~~~~~~~~~~N~~~~~~~~-----~~~~g~~~~~~~s~~nHsC~pn~~~~~~-~~~~~~~a~~~i~~g~el~~~Y 101 (335)
++.+...-.+..+.+.+|...... ...--.++.|..-++||+|.+.....+. +..+.+.+.++|.+|+||+|+|
T Consensus 197 ~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~Y 276 (472)
T KOG1337|consen 197 FTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINY 276 (472)
T ss_pred cchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEec
Confidence 445556777788888888765431 2233478999999999999993333332 3478999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCeE
Q 019809 102 IETAGSTMTRQKALKEQYLFT 122 (335)
Q Consensus 102 ~~~~~~~~~R~~~L~~~~~F~ 122 (335)
++... ..|...|||.
T Consensus 277 G~~~N------~eLL~~YGFv 291 (472)
T KOG1337|consen 277 GPKSN------AELLLHYGFV 291 (472)
T ss_pred CCCch------HHHHHhcCCC
Confidence 98443 4566699997
No 70
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.83 E-value=0.017 Score=60.15 Aligned_cols=103 Identities=18% Similarity=0.056 Sum_probs=75.8
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-----------
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------- 258 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~----------- 258 (335)
+...+..+...|++++|+..+++++.. .|.+ ..++..++.++...|+|++|+..+++++..
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 96 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQK-----DPND---AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence 344556666788999999888887653 3333 356777888899999999999988876642
Q ss_pred ----------------HHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 259 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 259 ----------------~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+....+...|..+..+..+|..+...|++++|+..|.+++.+
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 112223455666777888899999999999999999988764
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.029 Score=52.85 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCCh-hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 264 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~-~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p 264 (335)
.++..-+.+.....+|++..|-+.|..++.+ .|+|. ..+..+.+.+.+..++|+..+|+.-|..++.+
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------ 316 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------ 316 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------
Confidence 3344445666778899999999999988763 56665 44678888999999999999999999998874
Q ss_pred CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 265 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 265 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
.|.....+..-|+.+..++++++|+..+++|++.-.. -..+..+++....|+..+
T Consensus 317 --D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 317 --DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKSK 371 (486)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhh
Confidence 4566677888899999999999999999999985443 233445555555555443
No 72
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.73 E-value=0.025 Score=58.09 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=66.1
Q ss_pred HHHhhhhcCChHH----HHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 193 KTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 193 ~a~~~~~~g~~~e----a~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
.+..+...|++++ |+..+++++.+ .|.+ ..++..++.++...|++++|+.++++++.. .+.++
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~ 318 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDN---VRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP 318 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence 3444456677765 67777776553 3444 355677888899999999999988887763 23334
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
..+..+|.++...|++++|+..|.+++..
T Consensus 319 ---~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 319 ---YVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45677899999999999999999888764
No 73
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.73 E-value=0.032 Score=59.28 Aligned_cols=106 Identities=10% Similarity=0.112 Sum_probs=84.9
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 276 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~ 276 (335)
....|++++|...+.++...... .++.+ ....+...++.++...|++++|..++++.+...+...+..++..+..+..
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~-~g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQ-HDVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh-hcchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 45678899998888888776543 23322 23446678899999999999999999999998888766667777777778
Q ss_pred HhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 277 CGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 277 La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
+|.+++.+|++++|...+.+++.+....
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 9999999999999999999999987743
No 74
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=96.66 E-value=0.0013 Score=67.59 Aligned_cols=49 Identities=33% Similarity=0.572 Sum_probs=37.1
Q ss_pred ceeeEeccc-------ccccccCCccCcEE---EEeCC-EEEEEeccccCCCCeEEEeec
Q 019809 54 PLGTGLYPV-------ISIINHSCLPNAVL---VFEGR-LAVVRAVQHVPKGAEVLISYI 102 (335)
Q Consensus 54 ~~g~~~~~~-------~s~~nHsC~pn~~~---~~~~~-~~~~~a~~~i~~g~el~~~Y~ 102 (335)
.+.-++|+. +..+||+|.|||-. ..+|. ++.+.|++||++||||+..|-
T Consensus 1235 ~I~p~l~id~~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1235 VIDPGLFIDIPRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred ccCccccCChhhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecc
Confidence 455555553 23679999999953 33443 788999999999999999984
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.61 E-value=0.019 Score=53.75 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=71.8
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH-HH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL 272 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~-~~ 272 (335)
+..+...|++++|...+++++.+ .|.+ ......++.++...|++++|+.++.+.+..... +|.. ..
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~ 187 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGH 187 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHH
Confidence 33455788999999999988764 3444 344567889999999999999999988765432 2333 34
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.++.+|.++..+|++++|+..|+++..
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 577899999999999999999999843
No 76
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.61 E-value=0.0011 Score=66.48 Aligned_cols=56 Identities=29% Similarity=0.438 Sum_probs=40.4
Q ss_pred ccccccCCccCcEE--EEeCC------EEEEEeccccCCCCeEEEeecCCCCCHHHHHHHHhccCCeEEecc
Q 019809 63 ISIINHSCLPNAVL--VFEGR------LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP 126 (335)
Q Consensus 63 ~s~~nHsC~pn~~~--~~~~~------~~~~~a~~~i~~g~el~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~ 126 (335)
+.++||||+||..+ +|.+. -+.+.|.+-|++|+|||-.|........ .+-..|.|-
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~--------~keL~C~CG 1253 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVA--------TKELTCHCG 1253 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccc--------cceEEEecC
Confidence 35789999999976 34332 2567888999999999999976554433 344678774
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.60 E-value=0.024 Score=39.59 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=49.8
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV 258 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~-~~~~Al~~~~~~l~~ 258 (335)
....+..+...|++++|+..|.+++++ .|++ ..+..+++.++..+| ++++|+.++.+++.+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445666777889999999999999875 4444 446788999999999 899999999998864
No 78
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.57 E-value=0.012 Score=40.73 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=46.2
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 258 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~ 258 (335)
.+..+...|++++|+..++.+++. ++.-..++..++.++..+|++++|+.+++++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667889999999999888653 2445667888999999999999999999988754
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.56 E-value=0.019 Score=51.92 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=65.3
Q ss_pred HHHHHH-HHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChh
Q 019809 233 EKLIKI-LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 311 (335)
Q Consensus 233 ~~L~~~-~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~ 311 (335)
+..+.. ....++|++|+..++..+.. || .++.....++.||.++...|++++|+..|++++... |+||.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~----yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~ 215 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK----YP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPK 215 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH----Cc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcc
Confidence 334433 46679999999988776654 34 567777889999999999999999999999887643 67888
Q ss_pred HHHHHHHHHHHHHHhcc
Q 019809 312 MKELILKLEEAQAEASY 328 (335)
Q Consensus 312 ~~~l~~~l~~~~~el~~ 328 (335)
.-+.+-++..+..++..
T Consensus 216 ~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 216 AADAMFKVGVIMQDKGD 232 (263)
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 88887777666655443
No 80
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.55 E-value=0.04 Score=43.61 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+...++.++-..|+.++|+.++++++. .|...+.....+..+|..+..+|++++|+.++++++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677888899999999999999887 3555666667888999999999999999999999875
No 81
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.052 Score=53.03 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=75.7
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhH
Q 019809 200 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 279 (335)
Q Consensus 200 ~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~ 279 (335)
.+.|.+|...++.++.....+... ......+..+|+.+|.+++.+++|+.+++++|... |.-+..+-.+|-
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~ 497 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGY 497 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHH
Confidence 346788888888777543333322 22344567889999999999999999999988632 333344566788
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHH
Q 019809 280 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 317 (335)
Q Consensus 280 l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~ 317 (335)
++..+|+++.|+++|.+|+.+ -|+...+.+++.
T Consensus 498 iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK 530 (611)
T ss_pred HHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence 899999999999999999874 566666666654
No 82
>PRK12370 invasion protein regulator; Provisional
Probab=96.49 E-value=0.014 Score=58.67 Aligned_cols=83 Identities=10% Similarity=0.017 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHH
Q 019809 202 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 281 (335)
Q Consensus 202 ~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~ 281 (335)
++++|...++++++ +.|.+.. ++..++.++...|++++|+.++++++.. .++++ ..++.+|.++
T Consensus 319 ~~~~A~~~~~~Al~-----ldP~~~~---a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~---~a~~~lg~~l 382 (553)
T PRK12370 319 AMIKAKEHAIKATE-----LDHNNPQ---ALGLLGLINTIHSEYIVGSLLFKQANLL-----SPISA---DIKYYYGWNL 382 (553)
T ss_pred HHHHHHHHHHHHHh-----cCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHH
Confidence 45667666666654 3555543 4556778888899999999999988763 23444 4567889999
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 019809 282 WFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 282 ~~~g~~~eA~~~l~~A~~i 300 (335)
...|++++|+..+++|+.+
T Consensus 383 ~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 383 FMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHCCCHHHHHHHHHHHHhc
Confidence 9999999999999988775
No 83
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.45 E-value=0.13 Score=48.67 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=96.0
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhH
Q 019809 200 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 279 (335)
Q Consensus 200 ~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~ 279 (335)
.|+|+.|.+.|+..+.+...+ + +...-+++-+.|+..|.-..++++|+.|..+-+.+.+.+-. -.--+.++|.||.
T Consensus 248 lg~fe~A~ehYK~tl~LAiel-g-~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgn 323 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIEL-G-NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGN 323 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHh-c-chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHH
Confidence 378999999999887764432 2 12334677788999999999999999999988887765532 2223567899999
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhccccc
Q 019809 280 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 331 (335)
Q Consensus 280 l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~~~~ 331 (335)
.+..+|..+.|+.+.++++++-.....+....|. ..+|.+.+.++....|
T Consensus 324 a~~alg~h~kAl~fae~hl~~s~ev~D~sgelTa--r~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 324 AFNALGEHRKALYFAELHLRSSLEVNDTSGELTA--RDNLSDLILELGQEDS 373 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhh--hhhhHHHHHHhCCCcc
Confidence 9999999999999999999999888776655443 4456667777766655
No 84
>PRK12370 invasion protein regulator; Provisional
Probab=96.39 E-value=0.067 Score=53.75 Aligned_cols=90 Identities=17% Similarity=0.045 Sum_probs=62.4
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 273 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~ 273 (335)
+..+...|++++|+..+++++++ .|++.. ++..++.++...|++++|+.++++++... | .+|..
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----P-~~~~~--- 408 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLL-----SPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLD----P-TRAAA--- 408 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C-CChhh---
Confidence 33445678999999999988764 555554 46778889999999999999999877642 2 33322
Q ss_pred HHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 274 YYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.+.++.++...|++++|+..+++++.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 22234445567788888888777654
No 85
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.33 E-value=0.044 Score=59.96 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=71.9
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhH-----------HHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-----------MQTREKLIKILMELEDWKEALAYCQLTIPVY 259 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l-----------~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~ 259 (335)
...+..+...|++++|+..+++++++. |.+... ......++..+...|++++|+.++++++..
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~- 380 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV- 380 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 344555667889999999999887643 222211 112234566788899999999999998875
Q ss_pred HHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 260 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 260 ~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+|.-...++.||.++..+|++++|+..|++|+.+
T Consensus 381 -------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 381 -------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2333456788999999999999999999999976
No 86
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.25 E-value=0.0029 Score=56.27 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=36.6
Q ss_pred ccccccCCccCcEEE---EeCC-EEEEEeccccCCCCeEEEeecCCCC
Q 019809 63 ISIINHSCLPNAVLV---FEGR-LAVVRAVQHVPKGAEVLISYIETAG 106 (335)
Q Consensus 63 ~s~~nHsC~pn~~~~---~~~~-~~~~~a~~~i~~g~el~~~Y~~~~~ 106 (335)
..+||||=.+|+-.. .+|. .+.+.|.++|.+||||+..|+|-..
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSk 381 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSK 381 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccch
Confidence 468999999999543 3454 6899999999999999999998653
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.23 E-value=0.045 Score=58.48 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhH
Q 019809 200 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 279 (335)
Q Consensus 200 ~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~ 279 (335)
.|++++|+..+++++.+ .|+ ...+.+++.++...|++++|+..+++++.. .+.++ ..++++|.
T Consensus 589 ~Gr~~eAl~~~~~AL~l-----~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~ 651 (987)
T PRK09782 589 PGQPELALNDLTRSLNI-----APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGY 651 (987)
T ss_pred CCCHHHHHHHHHHHHHh-----CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHH
Confidence 36777777777776543 232 345677888888888888888888887763 23334 56788898
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHH
Q 019809 280 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 313 (335)
Q Consensus 280 l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~ 313 (335)
++...|++++|+..|++|+.+ .|+++...
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~ 680 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKG-----LPDDPALI 680 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 888999999999999998874 56666544
No 88
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.15 E-value=0.01 Score=36.08 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.7
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
++.+||.++..+|++++|+.+|++|+.+-.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999986554
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.13 E-value=0.094 Score=54.57 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.++..++.++...|++++|+.++++++... | .+ ...+.++|.++...|+ .+|+.++++++.
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p-~~---~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA----P-DN---AVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----C-CC---HHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 345556666666777777777666665421 1 11 2233444444444444 444444444443
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.09 E-value=0.19 Score=53.36 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=83.4
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCCh-hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 275 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~-~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~ 275 (335)
....|+++++...++.++.. +..... ....+...++.++...|++++|..++.+++...+.. +..+. .+..+.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~~~-~~~~~~ 535 (903)
T PRK04841 462 AINDGDPEEAERLAELALAE----LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVYHY-ALWSLL 535 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cchHH-HHHHHH
Confidence 34678899998888877653 122222 233455678888889999999999999999887753 44443 345678
Q ss_pred HHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhH
Q 019809 276 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 312 (335)
Q Consensus 276 ~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~ 312 (335)
.+|.++..+|++++|..++.+|+++.....++.++..
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 9999999999999999999999999988877666543
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.08 E-value=0.051 Score=59.51 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=72.5
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH----
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL---- 269 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~---- 269 (335)
+..+...|++++|+..++++++. .|.+ ..++..|+.++...|++++|+.++++++... |.....
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~-----~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~----p~~~~~~~~~ 343 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA-----NPKD---SEALGALGQAYSQQGDRARAVAQFEKALALD----PHSSNRDKWE 343 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCccchhHHH
Confidence 44456789999999999998764 3444 4557789999999999999999999988643 322111
Q ss_pred ------HHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 270 ------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 270 ------~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
..+....+|.++...|++++|+..|++|+.+
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1223456688889999999999999999986
No 92
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.05 E-value=0.015 Score=34.55 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=26.9
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
+..++++|.++..+|++++|+..+++|+++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3568999999999999999999999999863
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.02 E-value=0.042 Score=48.04 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=72.5
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 273 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~ 273 (335)
|.-+...|..+.|.+.|++++. ++|.+-. +.++-+--+..+|++++|..++++++. -+..|..+..
T Consensus 76 A~~Yq~~Ge~~~A~e~YrkAls-----l~p~~Gd---VLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t 141 (250)
T COG3063 76 AHYYQKLGENDLADESYRKALS-----LAPNNGD---VLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDT 141 (250)
T ss_pred HHHHHHcCChhhHHHHHHHHHh-----cCCCccc---hhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchh
Confidence 3334566788888888888876 4555544 456677777888999999999887764 3455666677
Q ss_pred HHHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 274 YYTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
+.|+|.....+|+++.|+.+|++|+++..
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 89999999999999999999999988543
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.99 E-value=0.054 Score=43.05 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.....++..+...|++++|.++++.++.. +|.....++.+|.++..+|++++|+.++.+++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667888899999999999998877653 2333466789999999999999999999999885
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.99 E-value=0.013 Score=57.13 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=73.0
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 278 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La 278 (335)
..|+|++|+.-|+.++. ..|++..+ .+.|+..+....+.++|+.-|.+++++. | ....+.|+||
T Consensus 442 ls~efdraiDcf~~AL~-----v~Pnd~~l---WNRLGAtLAN~~~s~EAIsAY~rALqLq----P----~yVR~RyNlg 505 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQ-----VKPNDYLL---WNRLGATLANGNRSEEAISAYNRALQLQ----P----GYVRVRYNLG 505 (579)
T ss_pred cchHHHHHHHHHHHHHh-----cCCchHHH---HHHhhHHhcCCcccHHHHHHHHHHHhcC----C----Ceeeeehhhh
Confidence 34577777777776654 35666543 6678888888888999999999988643 3 3344569999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhhhhcCCC
Q 019809 279 KLEWFLGDTENAIKSMTEAVEILRITHGTN 308 (335)
Q Consensus 279 ~l~~~~g~~~eA~~~l~~A~~il~~~~G~~ 308 (335)
.-+..+|-|+||+++|-.|+.+.+...+..
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~ 535 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHN 535 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999976644
No 96
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.90 E-value=0.019 Score=33.87 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
-.++.+|.+++.+|++++|+..+++|+.+-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999863
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.84 E-value=0.066 Score=38.00 Aligned_cols=61 Identities=26% Similarity=0.413 Sum_probs=49.8
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+..++..+...|++++|+.++++++.. .| .++ ..++.+|.++...+++++|++++.+++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL----DP-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc----CC-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778888899999999998887764 23 223 56788999999999999999999999885
No 98
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.80 E-value=0.086 Score=55.27 Aligned_cols=93 Identities=8% Similarity=-0.009 Sum_probs=46.2
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
.+.+.....+|++..|+..++++++. .|.+...+. .++.++...|++++|+.++++.+ .|.+.+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~------~p~n~~-- 101 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ------SSMNIS-- 101 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc------cCCCCC--
Confidence 34444455677777777777776542 333321111 44455555566666666555544 111111
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
...+..+|.++...|++++|+.+|+++++
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12233345555555555555555555543
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.079 Score=51.46 Aligned_cols=108 Identities=23% Similarity=0.221 Sum_probs=78.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
++....++.|+|+.|+..|..+.. +.|.|..+ +.+=+.+|..+++|++|+.-..+.++ ..|.-+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~-----l~p~nhvl---ySnrsaa~a~~~~~~~al~da~k~~~--------l~p~w~ 70 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIM-----LSPTNHVL---YSNRSAAYASLGSYEKALKDATKTRR--------LNPDWA 70 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHc-----cCCCccch---hcchHHHHHHHhhHHHHHHHHHHHHh--------cCCchh
Confidence 344556788999999999988765 34444333 33455678899999999998777665 335556
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
-.|.++|..+..+|+|++|+..|.+.+++ -|+ -+.+...|.++.
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~-----d~~---n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEK-----DPS---NKQLKTGLAQAY 114 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhc-----CCc---hHHHHHhHHHhh
Confidence 77899999999999999999999998773 223 344555555544
No 100
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=0.0065 Score=60.03 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 298 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 298 (335)
+.+.|+.+|.++++++.|.-++++++++ .|.-.+.+-.+|.++..+|+.++|+.++++|.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 3344444444444444444444444332 12222333444555555555555555555554
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.66 E-value=0.046 Score=44.61 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=54.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHH
Q 019809 234 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 313 (335)
Q Consensus 234 ~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~ 313 (335)
.++.++...|++++|+.++++++.. .|.-...++++|.++..+|++++|+..|.+|+.+ .|+++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~ 95 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEPV 95 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHH
Confidence 4677888999999999999987752 3444566899999999999999999999999974 56665443
No 102
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.58 E-value=0.3 Score=51.10 Aligned_cols=96 Identities=11% Similarity=-0.046 Sum_probs=70.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhh--------cccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQK--------KLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~--------~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
+...|++++|+..++.+....- ..-.|+ .....++..++.++...|++++|++.+++++.. .|. ++
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~----~P~-n~ 393 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN----APG-NQ 393 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-CH
Confidence 4567889999988887765421 011122 223455667888999999999999998887653 333 33
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
..++.+|.++...|++++|+..+++|+.+-
T Consensus 394 ---~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 394 ---GLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 568899999999999999999999988854
No 103
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.58 E-value=0.12 Score=54.10 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=70.3
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
...|..+...|++++|...+++++.+ .|.+.. +...++.++...|++++|+.++++++.. .+.++.
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~- 118 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSL-----EPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN- 118 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-
Confidence 34455566778999999999888764 445543 3457888889999999999998887753 233333
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
++.+|.++...|++++|+..+++|+.+
T Consensus 119 ---~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 119 ---LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 677899999999999999999988774
No 104
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.53 E-value=0.21 Score=37.49 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=53.7
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 239 LMELEDWKEALAYCQLTIPVYQRVYPQFH-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 239 ~~~~~~~~~Al~~~~~~l~~~~~~~p~~h-p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
..+.+|+.+|++...+..+....-....+ -.....+.++|.++...|..++|+..+++|+.+-+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34678999999999988887655544332 2356678899999999999999999999999998877
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.52 E-value=0.033 Score=38.68 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=40.5
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
...|++++|+..+++++.. .|.+. .++..++.+|...|++++|..++.+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-----NPDNP---EARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-----TTTSH---HHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3568899999999998764 44444 4466899999999999999998887665
No 106
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.51 E-value=0.056 Score=55.90 Aligned_cols=89 Identities=11% Similarity=0.180 Sum_probs=69.5
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 276 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~ 276 (335)
+...|++.+|+.++.++.+-..+ ...+.-+|+.+|..+|+|..|++.++..+ .++|+.+.+.+ +..
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~--------~~dv~lNlah~~~e~~qy~~AIqmYe~~l---kkf~~~~~~~v---l~~ 721 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSD--------FEDVWLNLAHCYVEQGQYRLAIQMYENCL---KKFYKKNRSEV---LHY 721 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhh--------CCceeeeHHHHHHHHHHHHHHHHHHHHHH---HHhcccCCHHH---HHH
Confidence 44667888998888887654321 12345689999999999999999998755 46677777765 677
Q ss_pred HhHHHHhcCChHHHHHHHHHHHH
Q 019809 277 CGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 277 La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
||+++...|++.+|..++.+|..
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 89999999999999999888765
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.51 E-value=0.16 Score=45.19 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
.+......|+|.+|+..++++.. +.|+++. ++..++.+|...|++++|..-+.+++++. +..|.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~-----l~p~d~~---~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p~--- 169 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR-----LAPTDWE---AWNLLGAALDQLGRFDEARRAYRQALELA-----PNEPS--- 169 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc-----cCCCChh---hhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCch---
Confidence 34445677899999998888754 4555654 46678889999999999999888888743 34453
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.+.|||.++...|+++.|+.++.+|..
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 468999999999999999999998754
No 108
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.50 E-value=0.08 Score=50.05 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHH
Q 019809 201 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 280 (335)
Q Consensus 201 g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l 280 (335)
|+|+.|+...+.-+.+.+. ++. ....-++..+|+.+++-.|+|+.|+++|+..+.+...+ ++--.-|...|.||..
T Consensus 209 Gdf~~ai~~H~~RL~ia~e-fGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQE-FGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNT 284 (639)
T ss_pred ccHHHHHHHHHHHHHHHHH-hhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhH
Confidence 6899998877766655433 332 34455778899999999999999999999988766444 2444557888999999
Q ss_pred HHhcCChHHHHHHHHHHHHhhhh
Q 019809 281 EWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 281 ~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
|..+.++++|+.|..+-+.|-+.
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777653
No 109
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.091 Score=50.67 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=69.7
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 273 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~ 273 (335)
|..+..+++|++|++.|..+.++..+ .|-.++..+-..+...-+..-.+++..|+.+++++++ ..|.--.+
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~-~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--------~Dpkce~A 539 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPR-EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--------LDPKCEQA 539 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccc-cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--------cCchHHHH
Confidence 44456778999999999998876432 2222221111111111111123889999999999886 34666678
Q ss_pred HHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 274 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
+-.||.+...+|+.++|+++++++...-+..
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999998765543
No 110
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.47 E-value=0.15 Score=49.26 Aligned_cols=71 Identities=11% Similarity=-0.028 Sum_probs=47.7
Q ss_pred CCCChhHHHHHHHHHHHHHhchhHHHHHHHHHH--HHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 222 HPFSVNLMQTREKLIKILMELEDWKEALAYCQL--TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 222 ~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~--~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+|.++. ...++.++.++...|+|++|.+++++ .+.. +|.-.. +..||.+++.+|+.++|.+++++++.
T Consensus 329 ~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE--------QLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455553 34566778888888888888888774 3321 222222 33678888888888888888888876
Q ss_pred hhh
Q 019809 300 ILR 302 (335)
Q Consensus 300 il~ 302 (335)
.+-
T Consensus 399 ~~~ 401 (409)
T TIGR00540 399 LML 401 (409)
T ss_pred HHh
Confidence 654
No 111
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.40 E-value=1 Score=38.95 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=83.1
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhc-----------hhHHHHHHHHHHHHH
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP 257 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~-----------~~~~~Al~~~~~~l~ 257 (335)
..+..+......|++.+|+..+++.++ .+|.|+.+-.++..++.++..+ +...+|+..++.++
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~-----~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li- 117 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIK-----LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI- 117 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH-----H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH-
Confidence 345566677788999999999988865 5788888888887777765443 23346666665555
Q ss_pred HHHHhcCCCChHHH--------------HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 258 VYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 258 ~~~~~~p~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
+.|| +++... -.-+.+|+.|...|.+..|...+..+++- =|+.+...+.+..+.+..
T Consensus 118 ---~~yP-~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-----yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 118 ---KRYP-NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN-----YPDTPAAEEALARLAEAY 188 (203)
T ss_dssp ---HH-T-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHH
T ss_pred ---HHCc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHH
Confidence 4455 333332 23334477788889999998887776653 256677788888888888
Q ss_pred HHhccccc
Q 019809 324 AEASYKLS 331 (335)
Q Consensus 324 ~el~~~~~ 331 (335)
.++....+
T Consensus 189 ~~l~~~~~ 196 (203)
T PF13525_consen 189 YKLGLKQA 196 (203)
T ss_dssp HHTT-HHH
T ss_pred HHhCChHH
Confidence 77776653
No 112
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.38 E-value=0.14 Score=47.02 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcC
Q 019809 227 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306 (335)
Q Consensus 227 ~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G 306 (335)
........++.+|...|++++|+..+.+++.. .|.....++++|.++...|++++|+..+.+|+++ .
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~ 128 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----D 128 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 33566778888999999999999999888873 2334567899999999999999999999999874 4
Q ss_pred CCChhH
Q 019809 307 TNSPFM 312 (335)
Q Consensus 307 ~~hp~~ 312 (335)
|+++.+
T Consensus 129 P~~~~a 134 (296)
T PRK11189 129 PTYNYA 134 (296)
T ss_pred CCCHHH
Confidence 555543
No 113
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.37 E-value=0.33 Score=45.32 Aligned_cols=121 Identities=14% Similarity=0.208 Sum_probs=86.4
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhH--HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhc-CCCChH-HHHHH
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNL--MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQFHPL-LGLQY 274 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l--~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~-p~~hp~-~~~~l 274 (335)
.-+.|+++++-++.+.+.. +.+.-.+ +++.-.|+..+..+.|+++|+-|..+++++...+- +.+|.. .+..+
T Consensus 134 gls~fq~~Lesfe~A~~~A----~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYA----HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred hHHHHHHHHHHHHHHHHHh----hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 3345666777677666543 2222222 34556788889999999999999999999887764 666655 47899
Q ss_pred HHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 275 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 275 ~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
|.|+..+..+|++.+|.++-++|.++-- .+|. -+....-+.-+.|+.++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal-~~Gd-ra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLAL-QHGD-RALQARCLLCFADIYRS 258 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHH-HhCC-hHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988654 4574 44444444455555443
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.44 Score=46.46 Aligned_cols=109 Identities=20% Similarity=0.196 Sum_probs=83.9
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
.+..++..|+|..|+..|.++++. .|++ ..++.+.+-+|..++.+..|+.-|...++. +|...-
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr-----~P~D---a~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~k 427 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKR-----DPED---ARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIK 427 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc-----CCch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHH
Confidence 455567889999999999887653 2444 455778889999999999999999998875 777777
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
.|.+=|.++....+|++|++.|.+|++.= |.-.++...+..+.+.
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHH
Confidence 77888999999999999999999987632 4455555555555443
No 115
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.11 Score=50.82 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=52.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 234 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQ---FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 234 ~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~---~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
.++.+....+.|.+|..+.+.++...+.+.+. +|| .+.+||-++..++++++|+.++++|+..-.
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p----~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP----TLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH----HHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 34444455678999999999999888777763 455 458999999999999999999999987543
No 116
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.34 E-value=0.049 Score=33.05 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQ 260 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~ 260 (335)
++.+|+.+|..+|+|++|++++++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 356899999999999999999999886554
No 117
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.34 E-value=0.04 Score=32.57 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
-.++.+|.++..+|++++|..+|++|+++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999864
No 118
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.30 E-value=0.15 Score=46.23 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=68.6
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
..+......|+.++|+..+++++++ .|.+..+ +..++..+...|+.+++.+....... ..| ..|.
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~----~~~-~~~~-- 215 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDA---RNALAWLLIDMGDYDEAREALKRLLK----AAP-DDPD-- 215 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHH----H-H-TSCC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHH----HCc-CHHH--
Confidence 3455556778999999999998774 5666554 45577788888999887666554433 222 3332
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 314 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~ 314 (335)
.+..+|.++..+|++++|+.++++++. ..|++|.+..
T Consensus 216 -~~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~~ 252 (280)
T PF13429_consen 216 -LWDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWLL 252 (280)
T ss_dssp -HCHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHHH
T ss_pred -HHHHHHHHhcccccccccccccccccc-----cccccccccc
Confidence 245678888889999999999999875 4667775543
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.26 E-value=0.11 Score=42.86 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc
Q 019809 226 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 305 (335)
Q Consensus 226 ~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~ 305 (335)
...+...+.++..+...|++++|..+++-+.. ..|.....+++||..+..+|++++|+..|.+|..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 45667777888888999999999998876553 23445567899999999999999999999999764
Q ss_pred CCCChh
Q 019809 306 GTNSPF 311 (335)
Q Consensus 306 G~~hp~ 311 (335)
.|++|.
T Consensus 99 ~~ddp~ 104 (157)
T PRK15363 99 KIDAPQ 104 (157)
T ss_pred CCCCch
Confidence 566663
No 120
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.29 Score=47.06 Aligned_cols=89 Identities=21% Similarity=0.104 Sum_probs=68.1
Q ss_pred cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 221 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 221 l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+-|++..+ ...|+++|..+++.++|+..+.+++..-.. -+..++.||+++-.++++++|..++++-++.
T Consensus 427 ~kPnDsRl---w~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 427 LKPNDSRL---WVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred cCCCchHH---HHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666554 456889999999999999998887763321 4678999999999999999999999999997
Q ss_pred hhhhcCCCChhHHHHHHHHHH
Q 019809 301 LRITHGTNSPFMKELILKLEE 321 (335)
Q Consensus 301 l~~~~G~~hp~~~~l~~~l~~ 321 (335)
. ..-|...|.+....-=|+.
T Consensus 496 ~-~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 496 S-ELEGEIDDETIKARLFLAE 515 (559)
T ss_pred H-HhhcccchHHHHHHHHHHH
Confidence 7 3447677766555444443
No 121
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.15 E-value=0.33 Score=44.69 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=65.1
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
.+.|.......+.+.|...+++++.- ++...++--.++++.+..|+|++|++.++.+++ .++-.+
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~yl 248 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE-------QNPEYL 248 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHHH
Confidence 34444445555677777777666542 222333344577788888999988876555443 455556
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+..+..|...|..+|+.++.+.++.++.+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778888899999999999999998876
No 122
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.55 Score=46.38 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHH-----------------------HHHhcCCCChHHHHHHHHHhHHHHhcCChHH
Q 019809 233 EKLIKILMELEDWKEALAYCQLTIPV-----------------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTEN 289 (335)
Q Consensus 233 ~~L~~~~~~~~~~~~Al~~~~~~l~~-----------------------~~~~~p~~hp~~~~~l~~La~l~~~~g~~~e 289 (335)
..=++++.++++|++|+..|+.++.- .....|...-..--.+||.|-++...|++.+
T Consensus 114 ~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~q 193 (652)
T KOG2376|consen 114 ELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQ 193 (652)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHH
Confidence 33467788899999999998887321 0122232222234578999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 290 AIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 290 A~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
|++.|++|+.|.+.++-.+..---++...|.-++-.
T Consensus 194 A~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 194 AIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 999999999999988776655445566666555443
No 123
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.27 Score=47.50 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhc
Q 019809 184 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 263 (335)
Q Consensus 184 ~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~ 263 (335)
+.....+-.+...+...++|++|++.|..++.+. |.-+.. +.+.+.+|...|+|++-++.|.++++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiF---YsNraAcY~~lgd~~~Vied~TkALE------ 177 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIF---YSNRAACYESLGDWEKVIEDCTKALE------ 177 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchh---hhhHHHHHHHHhhHHHHHHHHHHHhh------
Confidence 3444555667777888999999999999988753 222222 46788899999999999999999987
Q ss_pred CCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCCh-hHHHHHHHHH
Q 019809 264 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP-FMKELILKLE 320 (335)
Q Consensus 264 p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp-~~~~l~~~l~ 320 (335)
..|...-++++-|..+-.+|++.+|+.-+ .++-|++---+..-. +.-.++.+..
T Consensus 178 --l~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 178 --LNPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred --cCcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHHH
Confidence 45788889999999999999999997633 355566555444432 2333444443
No 124
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.09 E-value=1.3 Score=34.89 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=76.2
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCC---h--hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS---V--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h---~--~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
+.+....|-|++|..-++++....+.+ ++.- . .=+-++..|+.++..+|+|++++.-..++|..+.+. |..|-
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srti-P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~q 93 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTI-PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELHQ 93 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS--TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TTS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccC-ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-ccccc
Confidence 344456678899988888888876543 3321 1 113455678889999999999999999888766554 66777
Q ss_pred HHHHHH----HHHhHHHHhcCChHHHHHHHHHHHHhhhhhcC
Q 019809 269 LLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306 (335)
Q Consensus 269 ~~~~~l----~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G 306 (335)
.-|..+ ++-|..+...|+.++|.+.|+.|-+.+...-|
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 666443 45577778899999999999999988876655
No 125
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.08 E-value=0.4 Score=44.52 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh
Q 019809 183 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 262 (335)
Q Consensus 183 ~~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~ 262 (335)
++.....+-+....++.+|+|++|+.-|.+... +.|+|+.+ ..+-+.+|.++..|..|..-|..++.+-+.+
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~---~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVY---HINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccc---hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 334444455677778899999999998877654 46666654 3345668999999999999999888755433
Q ss_pred cCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 263 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 263 ~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
. -+|.+-|.+...+|...||.+-++.++++ .|+ +.++...++++
T Consensus 165 ~--------KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L-----EP~---~~ELkK~~a~i 208 (536)
T KOG4648|consen 165 V--------KAYSRRMQARESLGNNMEAKKDCETVLAL-----EPK---NIELKKSLARI 208 (536)
T ss_pred H--------HHHHHHHHHHHHHhhHHHHHHhHHHHHhh-----Ccc---cHHHHHHHHHh
Confidence 2 23444455555667777887777777653 233 44555544444
No 126
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.96 E-value=0.083 Score=47.94 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=49.0
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
.+..+...|+++++..+++...+.. |.++.+ ...++.++..+|+.++|+.++++++. ..+.+|.
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~--- 249 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPL--- 249 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HH---
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhcccccccccccccccccc-----ccccccc---
Confidence 3444566777777766665554432 344443 35678899999999999999998664 2345554
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
.+..+|.++...|+.++|..++++|+.-++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHHT--------------------
T ss_pred cccccccccccccccccccccccccccccC
Confidence 467889999999999999999999987664
No 127
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.96 E-value=0.52 Score=42.94 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=78.8
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHh--cCCCCh----HH
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRV--YPQFHP----LL 270 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h-~~l~~~~~~L~~~~~~~~-~~~~Al~~~~~~l~~~~~~--~p~~hp----~~ 270 (335)
.+|+++.|..++.++..... ...|.. ..+.+..++.+......+ +++.|..+.++++++.+.. ....|| ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56899999999998877654 344443 466788888888888888 9999999999999997652 113333 44
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 313 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~ 313 (335)
...+..|+..+...+..+...+ ..++++.++..+| +||.+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~ 124 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH
Confidence 5677778888877776654333 5556667777777 455443
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.87 E-value=0.35 Score=41.74 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHH
Q 019809 201 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 280 (335)
Q Consensus 201 g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l 280 (335)
++.++++..+++.+. ..|.+ ......|+.+|...|++++|+..+++++... +.++ ..+..+|.+
T Consensus 53 ~~~~~~i~~l~~~L~-----~~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-----P~~~---~~~~~lA~a 116 (198)
T PRK10370 53 QTPEAQLQALQDKIR-----ANPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQLR-----GENA---ELYAALATV 116 (198)
T ss_pred hhHHHHHHHHHHHHH-----HCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHH
Confidence 344555555555543 24444 4467789999999999999999999887632 3333 456788886
Q ss_pred H-HhcCC--hHHHHHHHHHHHHhhhhhcCCCChhHHHH
Q 019809 281 E-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMKEL 315 (335)
Q Consensus 281 ~-~~~g~--~~eA~~~l~~A~~il~~~~G~~hp~~~~l 315 (335)
+ ...|+ +++|+..+.+|+. ..|+++.....
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~-----~dP~~~~al~~ 149 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALA-----LDANEVTALML 149 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHH-----hCCCChhHHHH
Confidence 4 56677 5999999999987 35666654433
No 129
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.4 Score=42.28 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=72.2
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
....+.....|..|++-|.+++.+ .|+. +....+=+..++...+|+.+..-|++++++ .|..+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~-----nP~~---~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~vk 79 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICI-----NPTV---ASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNLVK 79 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhc-----CCCc---chhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHHHH
Confidence 333444555778888877776543 3333 333445566788899999999999998873 477778
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
..+.||........+.+|++.|.+|+..++..
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999888743
No 130
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.69 E-value=0.33 Score=50.00 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=68.5
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCC
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 267 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~h 267 (335)
.-+.+.|..++..|++.+|+.++..+... +.. ....+...++.+|+.++.+++|++++.+++... +.|
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-----p~~ 482 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR------EGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-----PDN 482 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC------ccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCc
Confidence 44556778888889999999988766431 111 114567789999999999999999999888632 344
Q ss_pred hHHHHHHHHHhHHHHhcCChHHHHHHHHH
Q 019809 268 PLLGLQYYTCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 268 p~~~~~l~~La~l~~~~g~~~eA~~~l~~ 296 (335)
- .....|+.++..+|+.++|...++.
T Consensus 483 ~---D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 483 L---DARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred h---hhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 3 4578899999999999965554443
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.86 Score=47.54 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=90.6
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCC--hhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h--~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
.+.+.-.+..|++.+|...+..++........+.. ..-+.+.++|+.++-.+++++.|.+.|..++. .||
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp 527 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EHP 527 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HCc
Confidence 33444445667888888888887765332222222 22255689999999999999999999988775 678
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
.+...+.+||......+...+|..++.+++++ ...+|....+...+.-.+++
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhhhh
Confidence 88788899998888889999999999999874 45688888888877655543
No 132
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.56 E-value=0.32 Score=45.48 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=58.2
Q ss_pred cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 221 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 221 l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
..+.++........++.++...|++++|...+++++.. -|. + ...+..+|.++...|++++|+.++.+++..
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~-~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPD-D---AWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC-C---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 34556666666677788888999999999999988863 232 2 456788899999999999999999999886
Q ss_pred hhh
Q 019809 301 LRI 303 (335)
Q Consensus 301 l~~ 303 (335)
...
T Consensus 178 ~~~ 180 (355)
T cd05804 178 WDC 180 (355)
T ss_pred cCC
Confidence 543
No 133
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.45 E-value=1.2 Score=43.83 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=92.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
++..+.-....|+.++|+..++++...+. .+...+ .-....++-.++.+.+|++|.++..++.+. ..+ .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-~~~Ql~---~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~W--S 338 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQS-EWKQLH---HLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKW--S 338 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchh-hHHhHH---HHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----ccc--H
Confidence 34556666778899999999987764322 122222 234567888889999999999988877762 234 3
Q ss_pred HHHHHHHHhHHHHhcCCh-------HHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 324 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~-------~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~ 324 (335)
.+...|-.|..+..+|+. ++|..++.++-....+.-|+.-|.=+=+.++++.-..
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~ 400 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK 400 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence 567778888888888988 8999999999999999889999988878888876543
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.45 E-value=0.22 Score=47.94 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 258 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~ 258 (335)
...++.+..+...|++++|+..|++++++ .|++.....++++++.+|..+|++++|++.++++++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456677778899999999999998874 5666655567899999999999999999999999986
No 135
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.39 E-value=1.8 Score=34.84 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=74.3
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
++..+...|+.+.|++.|.+++.+. |.+ ..++++-++++.-+|+-++|++-..++++.. |+.....-.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~-----P~r---aSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacq 116 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA-----PER---ASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQ 116 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc-----ccc---hHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHH
Confidence 4555667889999999998887642 222 4567788899999999999999888877643 444444445
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.+..-|.+|..+|+.+.|+.-|+.|.++
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 7778899999999999999999998764
No 136
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.37 E-value=0.15 Score=46.57 Aligned_cols=78 Identities=22% Similarity=0.132 Sum_probs=62.5
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcC-ChHHHHHHHHHHHHhhhh--hcCCCChhHHHH
Q 019809 239 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKEL 315 (335)
Q Consensus 239 ~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~~A~~il~~--~~G~~hp~~~~l 315 (335)
..++|+++.|..+..++-.......|..--.++..+|+.|+-....+ ++++|..++++|+++++. ..+..||...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35678999999988887766655555556667899999999999999 999999999999999976 234667777664
Q ss_pred H
Q 019809 316 I 316 (335)
Q Consensus 316 ~ 316 (335)
.
T Consensus 83 r 83 (278)
T PF08631_consen 83 R 83 (278)
T ss_pred H
Confidence 4
No 137
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.19 E-value=0.1 Score=38.10 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHH
Q 019809 242 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 242 ~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 296 (335)
+|+|++|+.++.+++..... .| -...++.+|..+...|++++|..++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 58899999999998876543 23 444677799999999999999999888
No 138
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.08 E-value=2.1 Score=36.65 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=61.7
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCCh-hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~-~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
+.|....+.+++++|+..++.++.. +.+. .-.-+...|+++...++.+++|+...... ..+--.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---------~~~~w~ 158 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ------TKDENLKALAALRLARVQLQQKKADAALKTLDTI---------KEESWA 158 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---------ccccHH
Confidence 4455556677777777766655432 1121 22234456888888888888887653321 233334
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
+.....-|.++..+|+..+|+..|++|+...
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4445566888999999999999999999865
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.03 E-value=0.1 Score=47.95 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=14.0
Q ss_pred HHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 275 YTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 275 ~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
.|+|.-.+..++++-++..+++|+....
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 3444444445555555555555544433
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.03 E-value=1.1 Score=43.44 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=65.2
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
+..|......+.+++|++.+..+++ -.|.|+....+ .++++...++.++|.+.+++++.. +|.. |
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~~---~~~i~~~~nk~~~A~e~~~kal~l----~P~~-~-- 374 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLEL---AGDILLEANKAKEAIERLKKALAL----DPNS-P-- 374 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhc----CCCc-c--
Confidence 3344445555667777766666543 36777776554 567799999999999999988753 3322 3
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAV 298 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~ 298 (335)
+...++|..+...|+..+|+..+.+..
T Consensus 375 -~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 375 -LLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 456788999999999998888777654
No 141
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=0.12 Score=51.27 Aligned_cols=86 Identities=21% Similarity=0.231 Sum_probs=62.2
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 278 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La 278 (335)
-+++++.|++-++++..+ .| ...-++..++.-+....++++|..+++.++.+..+.| .++|-||
T Consensus 433 LQkdh~~Aik~f~RAiQl-----dp---~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYGlG 496 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL-----DP---RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYGLG 496 (638)
T ss_pred hhhHHHHHHHHHHHhhcc-----CC---ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHhhh
Confidence 367888898888887654 22 1223344566666777889999999998886544333 4678888
Q ss_pred HHHHhcCChHHHHHHHHHHHHh
Q 019809 279 KLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 279 ~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.+|..+++++.|+-+|++|++|
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hheeccchhhHHHHHHHhhhcC
Confidence 8998888888888888888765
No 142
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.49 Score=44.98 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
+|....+-..++..+..-|.++.++.+.++.+..+ |.. .....||.+......+.+|+.+|..|+.+
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---- 500 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQ---- 500 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----ccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc----
Confidence 44445555667777777788888888777666433 322 23467888888888999999999998874
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcccccCCCC
Q 019809 305 HGTNSPFMKELILKLEEAQAEASYKLSSKDE 335 (335)
Q Consensus 305 ~G~~hp~~~~l~~~l~~~~~el~~~~~~~~~ 335 (335)
.|++ +..++-|..++.+.. +.-++||
T Consensus 501 -dP~~---~~sl~Gl~~lEK~~~-~~DATdE 526 (564)
T KOG1174|consen 501 -DPKS---KRTLRGLRLLEKSDD-ESDATDE 526 (564)
T ss_pred -Cccc---hHHHHHHHHHHhccC-CCCcccc
Confidence 3444 445555555555555 5555554
No 143
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.96 E-value=0.34 Score=43.48 Aligned_cols=88 Identities=23% Similarity=0.179 Sum_probs=69.0
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChh
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 311 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~ 311 (335)
.++.+-.+...|+|..|..-++..+.- | +.++..+.++|=||..++.+|++++|...|..++. .| |+||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~----Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~~-P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK----Y-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----DY-PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----hC-CCCCC
Confidence 455666667778999998887766543 3 47788889999999999999999999999988877 33 47787
Q ss_pred HHHHHHHHHHHHHHhccc
Q 019809 312 MKELILKLEEAQAEASYK 329 (335)
Q Consensus 312 ~~~l~~~l~~~~~el~~~ 329 (335)
.-|.+-+|..+..++...
T Consensus 214 ApdallKlg~~~~~l~~~ 231 (262)
T COG1729 214 APDALLKLGVSLGRLGNT 231 (262)
T ss_pred ChHHHHHHHHHHHHhcCH
Confidence 778888887776666543
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.87 E-value=0.88 Score=40.64 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=61.2
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChh
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 311 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~ 311 (335)
....+..+...|+|++|++.++.++. .+| .+|......+.||.++...+++++|+..+++.+.. =|+||.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~~ 104 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN 104 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCCc
Confidence 44556667788999999999888765 455 45777788999999999999999999999998764 356666
Q ss_pred HHHHHHHHHH
Q 019809 312 MKELILKLEE 321 (335)
Q Consensus 312 ~~~l~~~l~~ 321 (335)
+-.+.=++..
T Consensus 105 ~~~a~Y~~g~ 114 (243)
T PRK10866 105 IDYVLYMRGL 114 (243)
T ss_pred hHHHHHHHHH
Confidence 6554444443
No 145
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.86 E-value=1.3 Score=32.01 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhc
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 263 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~ 263 (335)
+..+++..++..+.+.++|+..++++++.... ......+.-.|+++|.+.|+|.+++++...=+++.+.+-
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455566666777788999999998875432 345667788899999999999999999887777766543
No 146
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.72 E-value=0.23 Score=47.58 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHH-------HHhhcccCCC--Ch-hHHHHHHHHHHHHHhchh
Q 019809 175 RSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIE-------KLQKKLYHPF--SV-NLMQTREKLIKILMELED 244 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l-------~l~~~~l~~~--h~-~l~~~~~~L~~~~~~~~~ 244 (335)
.+.+..+.+..++-.+.++....-+.|++.+|+..-+.+- +.+++.--|. |. .+..++.+|++.|....-
T Consensus 137 ~peek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm 216 (840)
T KOG2003|consen 137 GPEEKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDM 216 (840)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHH
Confidence 3456677888888888887777778888888876544321 2222322232 22 234566777776654444
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 245 WKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 245 ~~~Al~~~~~~l~~~~~~~p-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+.+|+.- |+.+.- .--|.-|..-.++|.+++....+.+|+++|+-|++
T Consensus 217 ~~ealnt-------yeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald 265 (840)
T KOG2003|consen 217 TAEALNT-------YEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD 265 (840)
T ss_pred HHHHhhh-------hhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh
Confidence 4444433 332222 33445556666777777777777777777776665
No 147
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.21 Score=46.80 Aligned_cols=80 Identities=23% Similarity=0.209 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHhccccccc----------cCCCCceeeEecccccccccCCc-cCcEEEEeCCEEEEEeccccCCCC
Q 019809 27 EISINEIAENFSKLACNAHTIC----------NSELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA 95 (335)
Q Consensus 27 ~~~~~~~~~~~~~~~~N~~~~~----------~~~~~~~g~~~~~~~s~~nHsC~-pn~~~~~~~~~~~~~a~~~i~~g~ 95 (335)
.++.++.+.+++.+..=+|-|. +.+-.+.|-..-|.+.++||+=. -|+...++.+.+.+.|.|+|++|+
T Consensus 173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd 252 (466)
T KOG1338|consen 173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD 252 (466)
T ss_pred ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence 6788888888888777777653 22355788899999999999877 777778899999999999999999
Q ss_pred eEEEeecCCCC
Q 019809 96 EVLISYIETAG 106 (335)
Q Consensus 96 el~~~Y~~~~~ 106 (335)
|+..+|+-..+
T Consensus 253 ev~n~dg~~p~ 263 (466)
T KOG1338|consen 253 EVDNSDGLKPM 263 (466)
T ss_pred ccccccccCcc
Confidence 99999975443
No 148
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.38 Score=46.25 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH----HhcCC-------CChHH
Q 019809 202 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ----RVYPQ-------FHPLL 270 (335)
Q Consensus 202 ~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~----~~~p~-------~hp~~ 270 (335)
+.++|+..+++++++ |+..+.+...++.-|+++.+-..|++-+++++++.. ..||- .-|..
T Consensus 345 eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred hHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 456666677776654 555666667777888888888888888888887643 33431 12333
Q ss_pred HHH---------------HHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 271 GLQ---------------YYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 271 ~~~---------------l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
++. +..||+.|..+++.++|++-|++|+..-
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 332 3456888888999999999999998743
No 149
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.50 E-value=0.55 Score=45.12 Aligned_cols=97 Identities=5% Similarity=-0.032 Sum_probs=68.2
Q ss_pred HhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH---------------H
Q 019809 195 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------Y 259 (335)
Q Consensus 195 ~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~---------------~ 259 (335)
......|++++|...+++..+ ..|.|+.. +..++.+|...|+|++|++.+..+... +
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~-----~~P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLE-----VAPRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAW 232 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344567889999888877654 45777654 455778899999999999655554421 0
Q ss_pred -------------------HHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 260 -------------------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 260 -------------------~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
-+-.|..+|...-....+|..+...|+.++|.+.+++++.
T Consensus 233 ~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 233 IGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123444454555667788899999999999999988876
No 150
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=1.3 Score=44.00 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=74.1
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHh-----------------------hcccCCCChhHHHHHHHHHHHHHhchhHHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQ-----------------------KKLYHPFSVNLMQTREKLIKILMELEDWKEAL 249 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~-----------------------~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al 249 (335)
+|..+...|+|+++..+|+.+.+-. .+..+...-......++.+-++...|+|.+|+
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~ 195 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAI 195 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHH
Confidence 3445567788888888888863211 11122222235667788888999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCC------hHHHHHHHHHhHHHHhcCChHHHHHHHHHHH
Q 019809 250 AYCQLTIPVYQRVYP-QFH------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 298 (335)
Q Consensus 250 ~~~~~~l~~~~~~~p-~~h------p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 298 (335)
++.+.++.+.++-+- ++. -.+......|+-++..+|+.+||...|...+
T Consensus 196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999887766543 111 2356677788888899999999999776543
No 151
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.36 E-value=0.75 Score=44.19 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=40.6
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 273 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~ 273 (335)
+..+...|+.++|..+.++.++. +.++.+... ......++.+++++..+..++ .||.-...
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l-----~~~l~~~~~~~al~~~e~~lk--------~~P~~~~l 330 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKR------QYDERLVLL-----IPRLKTNNPEQLEKVLRQQIK--------QHGDTPLL 330 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH-----HhhccCCChHHHHHHHHHHHh--------hCCCCHHH
Confidence 44455667777777776665441 112221111 111122555555555444331 22222233
Q ss_pred HHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 274 YYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
++.+|.++...+++++|+.+|++++.
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555555555555555555554
No 152
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=1.3 Score=39.34 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcc-c--CCCC-------hhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL-Y--HPFS-------VNLMQTREKLIKILMELEDWKEALAYCQLTI 256 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~-l--~~~h-------~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l 256 (335)
+..+.++..++...|+|.+|.+.|+.+....+.+ + .|.. ....-.+.+.++++...|+|-++++.|..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456667788889999999999998876532221 1 1222 1223345667788889999999999998877
Q ss_pred HHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 257 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 257 ~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
. -||.-.-+||.-|+++...-+..+|..-|.++++
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 5 4566667899999999999999999999988887
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.34 E-value=0.46 Score=44.99 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=51.2
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhH
Q 019809 235 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 312 (335)
Q Consensus 235 L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~ 312 (335)
.+..+...|+|++|++++.+++.. . |.-...++++|.++..+|++++|+..+.+|+.+ .|+++..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~----~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~~a 72 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL----D----PNNAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLAKA 72 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHH
Confidence 355667789999999999998863 2 233456889999999999999999999999885 4555543
No 154
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.27 E-value=1.2 Score=45.97 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhc
Q 019809 184 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 263 (335)
Q Consensus 184 ~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~ 263 (335)
..+++.++..|..+...|++++|..++..+.+. .|. -..++..|+.+|-.+|+.++|+.....+- .+-
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq-----dp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAA----HL~ 203 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ-----DPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAA----HLN 203 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----Ccc---chhhHHHHHHHHHHcccHHHHHHHHHHHH----hcC
Confidence 345667777788888889999999999888664 222 23456778888888888888876544322 223
Q ss_pred CCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 264 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 264 p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
|.++ -.+..+|.+...+|.++.|+-.|.+|+.
T Consensus 204 p~d~----e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 204 PKDY----ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred CCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4444 2356667777777777777777777765
No 155
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.18 E-value=1.9 Score=40.20 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCC
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 265 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~ 265 (335)
+++..++....+...|.+..|+..|..+.+ +.|++ ..+...-+.+|..+|+-+-|+.-..++|+.-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-----~dp~~---Y~aifrRaT~yLAmGksk~al~Dl~rVlelK------ 102 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-----GDPNN---YQAIFRRATVYLAMGKSKAALQDLSRVLELK------ 102 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-----CCchh---HHHHHHHHHHHhhhcCCccchhhHHHHHhcC------
Confidence 444455556666777888888888877754 34444 4456666778888999888888777777633
Q ss_pred CChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 266 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 266 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
|...-+...-|.+++.+|++++|+.-+.+.++ +.|+....++.+.+|+-+.
T Consensus 103 --pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 103 --PDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred --ccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhHH
Confidence 55555666778889999999999998887765 4566667777777776554
No 156
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.15 E-value=1.1 Score=43.17 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=73.4
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 277 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~L 277 (335)
...|++++|.+.|+.++. ++.....++.+++-.+-.+|++++|++++.++-.++. ++ +-.++.+
T Consensus 501 f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-----nn---~evl~qi 564 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-----NN---AEVLVQI 564 (840)
T ss_pred eecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-----hh---HHHHHHH
Confidence 456788999988888764 2445677888888888899999999998877665553 22 3456788
Q ss_pred hHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 278 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 278 a~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
|.+|-.+.+-..|+++|-+|..+ =|+.|-+ +.+|.++
T Consensus 565 aniye~led~aqaie~~~q~~sl-----ip~dp~i---lskl~dl 601 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-----IPNDPAI---LSKLADL 601 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-----CCCCHHH---HHHHHHH
Confidence 88888888888898888887653 4666643 4455544
No 157
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.13 E-value=1.3 Score=45.88 Aligned_cols=57 Identities=23% Similarity=0.138 Sum_probs=41.8
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhh-hhhc----------------C-CCChhHHHHHHHHHHHHHHhcc
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL-RITH----------------G-TNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il-~~~~----------------G-~~hp~~~~l~~~l~~~~~el~~ 328 (335)
..|..|+.+|...|+.++|.+++++..+.= +... | ..||...++.++|.++..++..
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999988765431 1111 1 3499999999999888776653
No 158
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=93.08 E-value=0.098 Score=52.04 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=33.1
Q ss_pred ccccccCCccCcEEE--E-eC-CEEEEEeccccCCCCeEEEeecC
Q 019809 63 ISIINHSCLPNAVLV--F-EG-RLAVVRAVQHVPKGAEVLISYIE 103 (335)
Q Consensus 63 ~s~~nHsC~pn~~~~--~-~~-~~~~~~a~~~i~~g~el~~~Y~~ 103 (335)
+-+.|||=.|||... + .| .++-++|.|.|.+|||||..|-.
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 446799999999752 2 23 36889999999999999999953
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.06 E-value=0.93 Score=31.62 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=41.8
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+...+++++|+..+++++.+ +|.++ ..+...+.++...|+|.+|+..+..+++
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL-----DPDDP---ELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh-----Ccccc---hhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34678999999998888764 44443 3456688899999999999999998885
No 160
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.84 E-value=1.2 Score=41.70 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHHhhc-ccCCCCh-hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhH
Q 019809 202 NHQEVVSTYKMIEKLQKK-LYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 279 (335)
Q Consensus 202 ~~~ea~~l~~~~l~l~~~-~l~~~h~-~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~ 279 (335)
++++|.-...++.++... .++..|. +..-+.+.++.++..+|....|.++|+++..+. +-.++-+..+.-+.-+|.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla--l~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA--LQHGDRALQARCLLCFAD 254 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH--HHhCChHHHHHHHHHHHH
Confidence 555665555555555433 2334343 334567788889999999999999999987654 234677888899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 280 LEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 280 l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
+|...|+.+.|-.-|+.|+.++.-.
T Consensus 255 IyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887644
No 161
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.73 E-value=4.1 Score=36.23 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHH-hcCChHHHHHHHHHHHHhhhhhcCC-CChhHHHHHHHHHHHH
Q 019809 246 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRITHGT-NSPFMKELILKLEEAQ 323 (335)
Q Consensus 246 ~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~il~~~~G~-~hp~~~~l~~~l~~~~ 323 (335)
++|...++.++++....+|+.||.+.....+.+..++ ..|+.++|....++|++-.....+. +-..+++....++-++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLr 222 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLR 222 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH
Confidence 6788899999999999999999998666666666654 4799999998877765554433321 1122455555555554
Q ss_pred HHh
Q 019809 324 AEA 326 (335)
Q Consensus 324 ~el 326 (335)
..+
T Consensus 223 dNl 225 (236)
T PF00244_consen 223 DNL 225 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 162
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.71 E-value=0.34 Score=28.46 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVY 259 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~ 259 (335)
.+..+++.++..++++++|+..+++++.+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456789999999999999999999998753
No 163
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.57 E-value=6 Score=38.06 Aligned_cols=106 Identities=8% Similarity=-0.055 Sum_probs=61.5
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
...+......|+++.|.+...+..+. .|. +. ..+...++++...|++++|.+++.++. +..|.....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~-----~~~-~~--~~~llaA~aa~~~g~~~~A~~~l~~a~----~~~p~~~l~~ 155 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH-----AAE-PV--LNLIKAAEAAQQRGDEARANQHLEEAA----ELAGNDNILV 155 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc-----CCC-CH--HHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCcCchHH
Confidence 33444455678888888777665432 121 11 112245667777788888888877754 2334333222
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 316 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~ 316 (335)
....+.++...|++++|...+++..+. .|+||.+..+.
T Consensus 156 ---~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ll 193 (409)
T TIGR00540 156 ---EIARTRILLAQNELHAARHGVDKLLEM-----APRHKEVLKLA 193 (409)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 222367777778888887776666553 47777554433
No 164
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.54 E-value=0.29 Score=30.22 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=32.5
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCC
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 308 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~ 308 (335)
.+..||.+....++|+.|+.-|++|++|.+..+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999887764
No 165
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=4.6 Score=36.01 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=59.8
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCCh---hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH-
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSV---NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL- 272 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~---~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~- 272 (335)
+....+|++|..-+.++.+- +++|. +-+.++...+....++..|.++..+++++...|... .+|.++-
T Consensus 41 fRnAk~feKakdcLlkA~~~-----yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~---GspdtAAm 112 (308)
T KOG1585|consen 41 FRNAKKFEKAKDCLLKASKG-----YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC---GSPDTAAM 112 (308)
T ss_pred HHhhccHHHHHHHHHHHHHH-----HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---CCcchHHH
Confidence 33444666665444443321 22222 235667778888888999999999999999888543 3444432
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
.+-+-|++ ...-+-++|+.+|++|+++++..
T Consensus 113 aleKAak~-lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 113 ALEKAAKA-LENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHH-hhcCCHHHHHHHHHHHHHHHhcc
Confidence 33333333 23445677777777777776654
No 166
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.34 E-value=0.27 Score=31.09 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHH
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 314 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~ 314 (335)
.++.||.++..+|++++|++.|+++++. .|+++....
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHHH
Confidence 4678999999999999999999999883 566665443
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.17 E-value=0.44 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVY 259 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~ 259 (335)
.+...++.++...|++++|++++++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 356778999999999999999999988753
No 168
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.06 E-value=2.1 Score=39.94 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=78.9
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 266 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~-h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~ 266 (335)
...++.+......++|-+.++.++++++. .|. -...+.....+..++..-+++.+|+..|.++|++
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~-----ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-------- 336 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKN-----EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-------- 336 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc-----CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------
Confidence 33444555566777888888888777653 222 2223344445666778889999999999998873
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
.|.-+..+-.-|.+|..-..|++|+.-|++|.+ +.++|...++=++..+.+
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e-----~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE-----LNESNTRAREGLERAKRL 387 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHH
Confidence 355556677778888888889999999999876 455665555544444433
No 169
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.03 E-value=0.43 Score=29.45 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCC
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 265 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~ 265 (335)
++..|+.+....++|++|+.=+++.+++.++++|+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 46678889999999999999999999999999986
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.97 E-value=2.8 Score=38.44 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHH
Q 019809 201 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 280 (335)
Q Consensus 201 g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l 280 (335)
+++++|..+|+.+.. .+++ + ..++..++.+.+.+|+|++|.+...+++.. .+.+| ..+.|++.+
T Consensus 181 e~~~~A~y~f~El~~----~~~~-t---~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~---d~LaNliv~ 244 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD----KFGS-T---PKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDP---DTLANLIVC 244 (290)
T ss_dssp TCCCHHHHHHHHHHC----CS---S---HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHH---HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh----ccCC-C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCH---HHHHHHHHH
Confidence 367888888877532 2333 2 344667888899999999999988776541 23445 457788888
Q ss_pred HHhcCCh-HHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHH
Q 019809 281 EWFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 324 (335)
Q Consensus 281 ~~~~g~~-~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~ 324 (335)
...+|+. +.+.+++.+ ++.. .|+||+++++.++=..-.+
T Consensus 245 ~~~~gk~~~~~~~~l~q----L~~~-~p~h~~~~~~~~~~~~FD~ 284 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQ----LKQS-NPNHPLVKDLAEKEAEFDR 284 (290)
T ss_dssp HHHTT-TCHHHHHHHHH----CHHH-TTTSHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHH----HHHh-CCCChHHHHHHHHHHHHHH
Confidence 8889988 455555555 3334 6789999998877655443
No 171
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.60 E-value=5.4 Score=33.79 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhchhH---HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcC----ChHHHHHHHHHHHHhh
Q 019809 229 MQTREKLIKILMELEDW---KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG----DTENAIKSMTEAVEIL 301 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~---~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g----~~~eA~~~l~~A~~il 301 (335)
...+++-+.++.++.++ .++.++.+.++.-++..+- .+|....+++++|.++..++ +..+|..+|++|.+-+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 45555666666665554 4566666666665554332 23444456788888876654 4567888888888877
Q ss_pred hhh--cCCCChhHHHHHH---HHHHHHHHhccc
Q 019809 302 RIT--HGTNSPFMKELIL---KLEEAQAEASYK 329 (335)
Q Consensus 302 ~~~--~G~~hp~~~~l~~---~l~~~~~el~~~ 329 (335)
+.. .-|+.+.++.-++ +.-++..|++..
T Consensus 104 qkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~ 136 (186)
T PF06552_consen 104 QKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred HHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence 755 4577777765443 334445666544
No 172
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=1.3 Score=39.57 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhc---CChHHHHHHHHHHHHhhh
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL---GDTENAIKSMTEAVEILR 302 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~---g~~~eA~~~l~~A~~il~ 302 (335)
.+...|+.+|...|+|++|.-.+++++-+ .|..| ....++|.+++.+ .++.-|+++|.+|+++-.
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~-----~P~n~---l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLI-----QPFNP---LYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 45667888899999999997766665532 12222 2233445554444 356778999999988654
No 173
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.19 E-value=5.3 Score=32.08 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=51.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC-CCChHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLL 270 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p-~~hp~~ 270 (335)
..+......|++++++..+++++. .+|.+-. +...++.+|...|+..+|++.+.+....+..-+| ..+|.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~-----~dP~~E~---~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALA-----LDPYDEE---AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH-----HSTT-HH---HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHh-----cCCCCHH---HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445678899999999888765 3555543 3556889999999999999999999998887777 555655
Q ss_pred H
Q 019809 271 G 271 (335)
Q Consensus 271 ~ 271 (335)
-
T Consensus 139 ~ 139 (146)
T PF03704_consen 139 R 139 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.17 E-value=4.7 Score=34.12 Aligned_cols=102 Identities=10% Similarity=0.087 Sum_probs=69.6
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
.+.+.-+..-|+.++|.+.|.++..... .....+.+...++++....++|.....+..++-...+. |++.-..
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~ 112 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERR 112 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHH
Confidence 3455556677999999999888755322 23455777788999999999999999998888777765 3332222
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.-..---|..+...++|.+|...|-.+..
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22222234455567889988888777654
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.09 E-value=0.67 Score=46.15 Aligned_cols=66 Identities=20% Similarity=0.073 Sum_probs=52.1
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChh
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 311 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~ 311 (335)
+..++......|++++|..+++++++.- |. +..+..+|+++...|+.++|...|++|+. +.|.+|.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCch
Confidence 3344455556799999999999988754 32 46888999999999999999999999976 4666664
No 176
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.01 E-value=0.62 Score=27.19 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQ 260 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~ 260 (335)
++...++.+|..+|++++|+.++++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567789999999999999999999988653
No 177
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.99 E-value=0.35 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=25.1
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+++++|.++..+|++++|+..+++.++-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5789999999999999999999988763
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.97 E-value=0.51 Score=29.81 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+...++.+|..+|++++|++.+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456789999999999999999999886
No 179
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.54 E-value=0.94 Score=36.36 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=49.2
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 238 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 238 ~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
+..+.|+.+.|++.+.+++.+. |..+..|+|-|+.+..+|+.++|.+-+.+|+++-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4567899999999999988754 7778899999999999999999999999999864
No 180
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=4.8 Score=38.55 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=79.3
Q ss_pred HhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH------HhcC----
Q 019809 195 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RVYP---- 264 (335)
Q Consensus 195 ~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~------~~~p---- 264 (335)
..+...++.++|.-.|+.+.. +. +.-++++..|...|...+.+++|.-....++..+. .++|
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~-----La---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQM-----LA---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVL 413 (564)
T ss_pred HHHHhccchHHHHHHHHHHHh-----cc---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceee
Confidence 334444566666655655543 22 23466788899999999999998887777665442 1222
Q ss_pred ------------------CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHh
Q 019809 265 ------------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 326 (335)
Q Consensus 265 ------------------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el 326 (335)
...|.+.-+-..+|.++..-|++++++.++++++.+.... .=|....++..-..+.+..|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHH
Confidence 1234444455677888888899999999999999875422 11444444444444445555
Q ss_pred ccccc
Q 019809 327 SYKLS 331 (335)
Q Consensus 327 ~~~~~ 331 (335)
+++++
T Consensus 492 ~~y~~ 496 (564)
T KOG1174|consen 492 EYYYK 496 (564)
T ss_pred HHHHH
Confidence 55443
No 181
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.20 E-value=0.45 Score=26.19 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=25.2
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.++++|.++...|++++|+..+.+++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5678999999999999999999999875
No 182
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.94 E-value=7.7 Score=30.09 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=59.7
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCCh-hHHHHHHHHH-HHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLI-KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~-~l~~~~~~L~-~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
|..+...||+-+|+.+.+........ ..+. .+....-.+. ..-....+-+-...|..-+++.+.+-. ..+|.-|
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~---~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp~~A 78 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGE---DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSPDSA 78 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccC---CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccChhHH
Confidence 45567889999999998877543221 1111 2222222222 222344566666677777777775543 3566668
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
..+++||+-+-..--|++++.--++++.|
T Consensus 79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 79 HSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88998887654444455555555555443
No 183
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.92 E-value=0.95 Score=44.60 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+...|+.+|.-.|+|++|+..++.+|. .-|.=+..+++||-.+..-.+.+||+..|.+|+++
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~--------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHh--------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 344566667777899999999888875 44666788999999999999999999999999875
No 184
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=89.74 E-value=3.5 Score=41.94 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=78.1
Q ss_pred CccccCcCCCCCcHHHHHHHHHHHHHHHHHHHhh-----hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHH
Q 019809 164 KGFTCQQCGLVRSKEEIKKIASEVNILSKKTLAL-----TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI 238 (335)
Q Consensus 164 ~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~-----~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~ 238 (335)
..|.|..-....+++-.++...-......+|.+. .++++|+++...++..+++ ++....+...++-+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCA 528 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHH
Confidence 3456655444455544444443333333333332 3456788877777766554 44446677778888
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 239 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 239 ~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
....++|+.|++.+...+. --|..+-.++||+.+|...++..+|...+++|+.
T Consensus 529 ALqlek~q~av~aF~rcvt--------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVT--------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHhhhHHHHHHHHHHhh--------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 8888999999887765443 2355567789999999888888888888887765
No 185
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=89.73 E-value=5.3 Score=37.79 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=63.5
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhh--------------------------cccCCCChhHHHHHHHHHHHHHhchhHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQK--------------------------KLYHPFSVNLMQTREKLIKILMELEDWK 246 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~--------------------------~~l~~~h~~l~~~~~~L~~~~~~~~~~~ 246 (335)
.|..+...|+.++|.++.+..++... --.||.++. ....|++.|.+.+.|.
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~---L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL---LLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChh---HHHHHHHHHHHhhHHH
Confidence 34455566677777766665544210 013555553 3455788888889999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 247 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 247 ~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+|-.+.+.+++.- |+ +..+..+|.++..+|+..+|....++++-
T Consensus 346 kA~~~leaAl~~~----~s-----~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 346 KASEALEAALKLR----PS-----ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhcC----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9988888666522 11 23466788888889999999999998883
No 186
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=89.68 E-value=4.1 Score=41.73 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=64.1
Q ss_pred HhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHHhcCCCChHHHH
Q 019809 195 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 195 ~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~--~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
..+...|.+++|.+.|..++. +.|.|+..+. .|+.++...|+-.-|.. +...++ ++-|.+ | -
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~~---Ala~~lle~G~~~la~~~~~L~dal----r~dp~n-~---e 755 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALA-----LDPDHVPSMT---ALAELLLELGSPRLAEKRSLLSDAL----RLDPLN-H---E 755 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHHH---HHHHHHHHhCCcchHHHHHHHHHHH----hhCCCC-H---H
Confidence 334455677778777766653 6788877654 57788888886555544 555444 333444 3 4
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
+++.||.+...+|+.++|.+.|.-|+++-
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 68999999999999999999999998754
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=89.58 E-value=6.7 Score=33.62 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=62.6
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC-CCChH
Q 019809 191 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPL 269 (335)
Q Consensus 191 ~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p-~~hp~ 269 (335)
+..+..+..-|++.||...|++++. .++.. ++ .++..++++....+++..|....+.+.+. -| .-+|.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qals---G~fA~-d~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~----~pa~r~pd 161 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALS---GIFAH-DA---AMLLGLAQAQFAIQEFAAAQQTLEDLMEY----NPAFRSPD 161 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhc---cccCC-CH---HHHHHHHHHHHhhccHHHHHHHHHHHhhc----CCccCCCC
Confidence 3445566677899999999988753 22322 22 23456788888899998887766654431 12 12222
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
. +.-+|..+..+|++++|+..++.|++
T Consensus 162 ~---~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 162 G---HLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred c---hHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2 23357788888999999998888876
No 188
>PLN03077 Protein ECB2; Provisional
Probab=89.48 E-value=9.6 Score=40.48 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=73.5
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHH------------HHHH-----
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT------------IPVY----- 259 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~------------l~~~----- 259 (335)
+...|..+++..+++...+... ..|+ ...+..+...+.+.|++++|.++.++. +..+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~g--i~P~----~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYS--ITPN----LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhC--CCCc----hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 4455677777777766543211 1221 234555667777777777777766553 1111
Q ss_pred --------HHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh-hhhh----------------cC-CCChhHH
Q 019809 260 --------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRIT----------------HG-TNSPFMK 313 (335)
Q Consensus 260 --------~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i-l~~~----------------~G-~~hp~~~ 313 (335)
++++ ...|.-+..+..|+.+|...|+.++|.+..+.-.+- ++.. -| ..||.+.
T Consensus 673 ~e~~e~~a~~l~-~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 673 VELGELAAQHIF-ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred hHHHHHHHHHHH-hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 0111 011222334666788899999999999977654331 1111 12 4599999
Q ss_pred HHHHHHHHHHHHhcc
Q 019809 314 ELILKLEEAQAEASY 328 (335)
Q Consensus 314 ~l~~~l~~~~~el~~ 328 (335)
++..+|+++..++..
T Consensus 752 ~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 752 EINTVLEGFYEKMKA 766 (857)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988777653
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.40 E-value=1.3 Score=40.43 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=46.6
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 258 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~ 258 (335)
.+|..+.+-|.++.|++-++.++.+ ++...+++..|+.+|..+|++++|++.++++|++
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 4555566667888888877777653 4556677888999999999999999999998874
No 190
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=89.11 E-value=0.19 Score=49.22 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=40.4
Q ss_pred ceeeEeccccc-ccccCCccCcEEEE---e-CCEEEEEeccccCCCCeEEEeecCC
Q 019809 54 PLGTGLYPVIS-IINHSCLPNAVLVF---E-GRLAVVRAVQHVPKGAEVLISYIET 104 (335)
Q Consensus 54 ~~g~~~~~~~s-~~nHsC~pn~~~~~---~-~~~~~~~a~~~i~~g~el~~~Y~~~ 104 (335)
.+..+.++..+ .+||||.||+...= . ...+.++|.+.|+.|+|+|.+|.-.
T Consensus 362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence 46677888876 67999999997532 2 2357899999999999999999644
No 191
>PRK14574 hmsH outer membrane protein; Provisional
Probab=88.97 E-value=11 Score=39.76 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=67.5
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhh---ccc----CCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQK---KLY----HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 266 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~---~~l----~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~ 266 (335)
.-.+..+++|++|..+..++.+..- ..+ ...|+........++..+...|++.+|.+..+.++.. -| .
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~----aP-~ 448 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST----AP-A 448 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-C
Confidence 3345678899999999888776211 112 2457777788888999999999999999988776542 22 2
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
++ ..+..+|.++...|+..+|+..+++|..
T Consensus 449 n~---~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 449 NQ---NLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 23 3455677777777777777777655443
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.74 E-value=4.9 Score=38.61 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHH
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 295 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 295 (335)
..++..-+..+...++++.|++..+++... .|.--..++.||++|..+|++++|+-.+.
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 334445566778889999999998888763 35555678889999999999999987654
No 193
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.57 E-value=1.1 Score=25.75 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPV 258 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~ 258 (335)
++..++.++...|++++|++++++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677889999999999999999987763
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=88.38 E-value=3.8 Score=34.20 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
....+...+..+.-+...|++++|..+++-+.- |.++.|.. ++.||..+..++++++|+..|..|..+-...
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 455666667777778889999999998775432 45555554 6889999999999999999999998877655
Q ss_pred cCCC
Q 019809 305 HGTN 308 (335)
Q Consensus 305 ~G~~ 308 (335)
++|-
T Consensus 105 p~p~ 108 (165)
T PRK15331 105 YRPV 108 (165)
T ss_pred CCcc
Confidence 5553
No 195
>PLN03218 maturation of RBCL 1; Provisional
Probab=88.19 E-value=7.3 Score=42.39 Aligned_cols=90 Identities=11% Similarity=-0.001 Sum_probs=44.8
Q ss_pred hhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 019809 196 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 275 (335)
Q Consensus 196 ~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~ 275 (335)
.+...|++++|..+|...... -+.|+ ..++..|+..|.+.|++++|.+++.++...-. +.-|.. ..+.
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD~-vTyn 583 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPDH-ITVG 583 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCcH-HHHH
Confidence 345567777777776655432 12222 23455566666666777776666555433100 111211 2334
Q ss_pred HHhHHHHhcCChHHHHHHHHHH
Q 019809 276 TCGKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 276 ~La~l~~~~g~~~eA~~~l~~A 297 (335)
.|-..+...|++++|.++|++.
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444455555555555555443
No 196
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.01 E-value=9.2 Score=28.47 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=53.4
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 277 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~-h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~L 277 (335)
..+++.+|.+.+.+.......-..+. +.....+..+++.+....|++++|+...++++.+.+.. .+...++..+.-+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~~ 87 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSWL 87 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHH
Confidence 56788888887777766544333322 22344556678888999999999999999999988765 3344444444444
Q ss_pred hH
Q 019809 278 GK 279 (335)
Q Consensus 278 a~ 279 (335)
..
T Consensus 88 ~~ 89 (94)
T PF12862_consen 88 AN 89 (94)
T ss_pred HH
Confidence 43
No 197
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=87.97 E-value=2.3 Score=42.35 Aligned_cols=63 Identities=30% Similarity=0.311 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHH
Q 019809 227 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 227 ~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A 297 (335)
.++.+...|++.|-..|++++|+++..++|+. .|...-.++.-|+++-..|++.+|...+.+|
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34678899999999999999999999988873 3666667888899999999999988876654
No 198
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=22 Score=32.54 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=79.8
Q ss_pred HHHHHHHHHHH-----HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHH
Q 019809 177 KEEIKKIASEV-----NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY 251 (335)
Q Consensus 177 ~~~~~~~~~~~-----~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~ 251 (335)
.+.++.++..+ ...+..+..+...|++.++..++..++... |.+ ..+...++.+|...|+.+.|...
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHHH
Confidence 34555554432 334455666778899999999888876532 222 34455677788877777555443
Q ss_pred HHH---------------HHHHHHHhc--C---------CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh--
Q 019809 252 CQL---------------TIPVYQRVY--P---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI-- 303 (335)
Q Consensus 252 ~~~---------------~l~~~~~~~--p---------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~-- 303 (335)
+.. -++..++.- | .-.|.-.-.-+.||+.+...|+.++|.+.|- .|+++
T Consensus 191 L~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~ 267 (304)
T COG3118 191 LAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDR 267 (304)
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhcc
Confidence 222 122222221 1 0123222455788999999999999987643 23333
Q ss_pred ----------------hcCCCChhHHHHHHHHHH
Q 019809 304 ----------------THGTNSPFMKELILKLEE 321 (335)
Q Consensus 304 ----------------~~G~~hp~~~~l~~~l~~ 321 (335)
.+|+.||.+....++|..
T Consensus 268 ~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL~s 301 (304)
T COG3118 268 GFEDGEARKTLLELFEAFGPADPLVLAYRRKLYS 301 (304)
T ss_pred cccCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 367778877777777654
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.53 E-value=0.4 Score=28.64 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHH
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAI 291 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~ 291 (335)
+|.-..++++||.++...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4555678999999999999999986
No 200
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.45 E-value=3.6 Score=43.57 Aligned_cols=63 Identities=13% Similarity=-0.059 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
++..||.+|-.+|++++|...+++++..- |.-+..++++|-.+... ++++|+.++.+|+..+-
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 66778999999999999999988888643 44446678888888888 99999999999988754
No 201
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=87.43 E-value=21 Score=31.92 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHh-cCChHHHHHHHHHH----HHhhhhhcCCCChhHHHHHHHH
Q 019809 245 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEA----VEILRITHGTNSPFMKELILKL 319 (335)
Q Consensus 245 ~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~~A----~~il~~~~G~~hp~~~~l~~~l 319 (335)
.++|.+.|+.++++...-+|+.||.+.....|.+..+.. +++.++|..+.++| +.-+... ..++ +++....+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l-~ee~--y~dstlIm 220 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL-GEES--YKDSTLIM 220 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc-Chhh--hHHHHHHH
Confidence 357888899999888888999999986666666666554 58888888765554 4444433 2232 44544444
Q ss_pred HHHHHHh
Q 019809 320 EEAQAEA 326 (335)
Q Consensus 320 ~~~~~el 326 (335)
+-++..+
T Consensus 221 qLLrDNL 227 (244)
T smart00101 221 QLLRDNL 227 (244)
T ss_pred HHHHHHH
Confidence 4444433
No 202
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=87.29 E-value=6.7 Score=35.04 Aligned_cols=85 Identities=18% Similarity=0.061 Sum_probs=60.2
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh--cCCCChhH
Q 019809 235 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFM 312 (335)
Q Consensus 235 L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~--~G~~hp~~ 312 (335)
++......|+|.+|+...+++... .|.=+-.++-+|-+|..+|++++|+.-|.+|+++.-.. .=.++-+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence 667778899999999988876642 22223456778999999999999999999998865322 22344455
Q ss_pred HHHHHHHHHHHHHhc
Q 019809 313 KELILKLEEAQAEAS 327 (335)
Q Consensus 313 ~~l~~~l~~~~~el~ 327 (335)
..+...+++.+..+.
T Consensus 178 ~~L~gd~~~A~~lll 192 (257)
T COG5010 178 LLLRGDLEDAETLLL 192 (257)
T ss_pred HHHcCCHHHHHHHHH
Confidence 556666666665444
No 203
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=87.07 E-value=7.3 Score=39.95 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=59.5
Q ss_pred cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 221 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 221 l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
++|+|+ .+...|+.-|..+++.+.|++++++++++ .|++|+. .+.-||.+...++++.+|++...-|++-
T Consensus 473 ~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 473 FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 577777 34567888889999999999999998864 3566663 3455677888889999999998888886
Q ss_pred hhhhcCCCC
Q 019809 301 LRITHGTNS 309 (335)
Q Consensus 301 l~~~~G~~h 309 (335)
....||.-|
T Consensus 543 ~~~N~~l~~ 551 (799)
T KOG4162|consen 543 FGDNHVLMD 551 (799)
T ss_pred hhhhhhhch
Confidence 666555443
No 204
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.07 E-value=0.72 Score=25.60 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.3
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~ 296 (335)
...+.||.+++.+|+.++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567899999999999999998763
No 205
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.98 E-value=2.9 Score=27.82 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 274 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
+|-||..+..+|++++|+.+...++++ -|+++..+.+...+++-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHH
Confidence 577888889999999999998888874 57888888888877654
No 206
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=20 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=23.5
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..++-+|.++..+|+++||+..+++|+.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4566778888899999999999998864
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=20 Score=31.82 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHH
Q 019809 202 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 281 (335)
Q Consensus 202 ~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~ 281 (335)
++..|..-|.++-..+.+.- +....+.++-..+.+|.+ .+-.+|+....++++++... | .-..-+.....+|.+|
T Consensus 49 ~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~-G-rf~~aAk~~~~iaEiy 123 (288)
T KOG1586|consen 49 NWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDM-G-RFTMAAKHHIEIAEIY 123 (288)
T ss_pred hHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhh-h-HHHHHHhhhhhHHHHH
Confidence 55556655555544433221 111223333333333333 37777777777777777543 1 1122234455666666
Q ss_pred Hh-cCChHHHHHHHHHHHHhhhh
Q 019809 282 WF-LGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 282 ~~-~g~~~eA~~~l~~A~~il~~ 303 (335)
-. +-+++.|+.+|++|-+.++.
T Consensus 124 Esdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 124 ESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcc
Confidence 43 36677777777777776653
No 208
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=86.68 E-value=25 Score=34.38 Aligned_cols=107 Identities=17% Similarity=0.087 Sum_probs=66.9
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 276 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~ 276 (335)
....++..+|.+.+++++. +.|+.+. ...+++++|+..|+.++|+.+....+. -.| ..| .-|..
T Consensus 350 ~~~~nk~~~A~e~~~kal~-----l~P~~~~---l~~~~a~all~~g~~~eai~~L~~~~~----~~p-~dp---~~w~~ 413 (484)
T COG4783 350 LLEANKAKEAIERLKKALA-----LDPNSPL---LQLNLAQALLKGGKPQEAIRILNRYLF----NDP-EDP---NGWDL 413 (484)
T ss_pred HHHcCChHHHHHHHHHHHh-----cCCCccH---HHHHHHHHHHhcCChHHHHHHHHHHhh----cCC-CCc---hHHHH
Confidence 3455678888888888765 3455432 356789999999999999887665442 122 222 33555
Q ss_pred HhHHHHhc-----------------CChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 019809 277 CGKLEWFL-----------------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 277 La~l~~~~-----------------g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~ 323 (335)
||..|-.+ |++++|...+.+|.+ -.+.+.|........+.+++
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~----~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ----QVKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hccCCcHHHHHHHHHHHHHH
Confidence 56665555 455555555555443 35677787777666665553
No 209
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.48 E-value=3.9 Score=30.44 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=35.8
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHH----------------HHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEA----------------VEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A----------------~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
-..+.||..+...|++++|++.+-+. +++++ .+|+.||.+.+-.++|..+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~-~lg~~~plv~~~RRkL~~l 88 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE-LLGPGDPLVSEYRRKLASL 88 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH-HcCCCChHHHHHHHHHHHH
Confidence 56788999999999999999876543 33333 3699999999988888654
No 210
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.47 E-value=2.8 Score=31.19 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHH---------------HHhcCCCChHHHHHHHHHhHHH
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVY---------------QRVYPQFHPLLGLQYYTCGKLE 281 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~---------------~~~~p~~hp~~~~~l~~La~l~ 281 (335)
..++..++..+...|++++|++.+..++..- =..+|+.||.+.-..-+|+.++
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 4678889999999999999998776655322 1346778888877777777664
No 211
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.17 E-value=7 Score=33.04 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 227 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 227 ~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
.+-.++..++.-|.+.||+++|++.+.++.+- .-+ .-.+...++++-.+....+++..+..++.+|..+++.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~--~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTS--PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 34556778999999999999999998875542 222 2223445677777888889999999999999999888
No 212
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.04 E-value=2.1 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHH
Q 019809 275 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 320 (335)
Q Consensus 275 ~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~ 320 (335)
+.||+.|...|+.+.|+..+++.+. +.+.+.-.+...+|.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~------~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE------EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH------cCCHHHHHHHHHHHh
Confidence 6789999999999999999998874 334444445555443
No 213
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.61 E-value=4.6 Score=29.10 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh--hcCCCChhHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE 314 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~--~~G~~hp~~~~ 314 (335)
.|+.+...|.-+-..|++++|..+|.+|++.+.. .++...|..++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~ 51 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLK 51 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 3566667777778889999999999999999988 45533333333
No 214
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.52 E-value=5 Score=41.68 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=50.8
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 277 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~L 277 (335)
..-|-.++|..+|+++.+ ++.|-..|..+|.|.+|+++.+. .+-..+-..|++-
T Consensus 811 ieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNY 864 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHH
Confidence 344667777777777643 22344567888999999886542 1222234567788
Q ss_pred hHHHHhcCChHHHHHHHHHH
Q 019809 278 GKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 278 a~l~~~~g~~~eA~~~l~~A 297 (335)
|+-+...++.+.|+.+|+|+
T Consensus 865 A~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhc
Confidence 88888888999999999884
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.33 E-value=11 Score=33.59 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=56.0
Q ss_pred cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 221 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 221 l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
|.|+-.--...+...+..|....+|++|-...+++.+.++.--..+|. +-++-..|.++....++.|++.++++|...
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA--AKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA--AKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334333334555666777888889999888888888888765555554 334566667777777788888888887776
Q ss_pred hhhh
Q 019809 301 LRIT 304 (335)
Q Consensus 301 l~~~ 304 (335)
+...
T Consensus 101 Y~E~ 104 (308)
T KOG1585|consen 101 YVEC 104 (308)
T ss_pred HHHh
Confidence 6554
No 216
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.30 E-value=10 Score=30.64 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCC
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG-LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 307 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~-~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~ 307 (335)
..++.+++-++....+-+. -++-+.+++.+++..||..- .-+|-||.-+..+++|+++++++..-++ .-|
T Consensus 32 ~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~-----~e~ 102 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE-----TEP 102 (149)
T ss_pred HHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh-----hCC
Confidence 4455666666665544322 23445566777777777754 3567788889999999999998877665 357
Q ss_pred CChhHHHHHHHHHHHH
Q 019809 308 NSPFMKELILKLEEAQ 323 (335)
Q Consensus 308 ~hp~~~~l~~~l~~~~ 323 (335)
+++..+++.+.+++..
T Consensus 103 ~n~Qa~~Lk~~ied~i 118 (149)
T KOG3364|consen 103 NNRQALELKETIEDKI 118 (149)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 8888999998887653
No 217
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.20 E-value=2.2 Score=41.28 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHH
Q 019809 253 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 324 (335)
Q Consensus 253 ~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~ 324 (335)
.+++-+.++++|+.||.+.....--|-.|...|+++..+++.+-|++.-+..+-|-+|.|...+..-.++=+
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 356778999999999999876666677889999999999999999999999999999999887766666533
No 218
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=84.57 E-value=11 Score=36.11 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=63.5
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhH
Q 019809 200 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 279 (335)
Q Consensus 200 ~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~ 279 (335)
.++++.|+++++++.+.. |. +...|++++...++-.+|+++..+++. ..|.-+..+...|.
T Consensus 182 t~~~~~ai~lle~L~~~~-----pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD-----PE------VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSELLNLQAE 242 (395)
T ss_pred cccHHHHHHHHHHHHhcC-----Cc------HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHHHHHHHHH
Confidence 357888888888765421 22 123477788878888899998888772 23333667778899
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhhcC
Q 019809 280 LEWFLGDTENAIKSMTEAVEILRITHG 306 (335)
Q Consensus 280 l~~~~g~~~eA~~~l~~A~~il~~~~G 306 (335)
.+...++++.|++..++|+.+.=-.+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~ 269 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFE 269 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHH
Confidence 999999999999999999886544433
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=32 Score=31.42 Aligned_cols=117 Identities=13% Similarity=0.020 Sum_probs=73.3
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~---~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
+...+..+++..|..-|.++.++ .|.|+.+.- .++.++..+ ..-.++..+.++++. .+|-.+
T Consensus 163 g~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~---g~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~~~i 227 (287)
T COG4235 163 GRAYMALGRASDALLAYRNALRL-----AGDNPEILL---GLAEALYYQAGQQMTAKARALLRQALA-------LDPANI 227 (287)
T ss_pred HHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHhcCCcccHHHHHHHHHHHh-------cCCccH
Confidence 33445667888888888888663 455655533 344444332 233455555555443 233222
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL 330 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~~~ 330 (335)
-.++-||..++..|++.+|...++.-+ ...-++.|-..-+.+.+.......+.+.
T Consensus 228 -ral~lLA~~afe~g~~~~A~~~Wq~lL----~~lp~~~~rr~~ie~~ia~~~~~~~~~~ 282 (287)
T COG4235 228 -RALSLLAFAAFEQGDYAEAAAAWQMLL----DLLPADDPRRSLIERSIARALAQRSAQG 282 (287)
T ss_pred -HHHHHHHHHHHHcccHHHHHHHHHHHH----hcCCCCCchHHHHHHHHHHHHhcccccC
Confidence 456778999999999999998665544 4667788877777777777666555443
No 220
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.23 E-value=33 Score=32.79 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=67.5
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHH------
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL--MELEDWKEALAYCQLTIPVYQR------ 261 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~--~~~~~~~~Al~~~~~~l~~~~~------ 261 (335)
.+..+..+...++|..|..++..+... +++... ...+..|+..| .+.-++++|.++.+..+.....
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~ 207 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQERE 207 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHH
Confidence 345566677888999999998887652 333322 45556666655 4667788888877765542111
Q ss_pred --------------hcC------C--C--ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh----hcCCC
Q 019809 262 --------------VYP------Q--F--HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTN 308 (335)
Q Consensus 262 --------------~~p------~--~--hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~----~~G~~ 308 (335)
+.+ . . .+.+...++..|.=-...|+|+.|+-.+-+|++.+.. .||-+
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~ 282 (379)
T PF09670_consen 208 GLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGID 282 (379)
T ss_pred HHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 111 0 0 1222223333333334579999999998888776543 46643
No 221
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.22 E-value=3.8 Score=35.85 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCC
Q 019809 242 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 308 (335)
Q Consensus 242 ~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~ 308 (335)
...+++|++-+..++..++ +.+..+-..|..+.++|=++..+|+.+....++++|++.++.++-.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888888888877654 44556668999999999999999999999999999999999887554
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.20 E-value=6.5 Score=31.97 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhch
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE 243 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~ 243 (335)
..++.+.....++++++|+..+++.++ +||.|+.+--++...+-++..+.
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCCccHHHHHHHHHHHHHh
Confidence 345566677888999999999988876 69999887666666555555443
No 223
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=84.13 E-value=4.4 Score=41.93 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTI 256 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l 256 (335)
+.+.++..|...|++++|++++++..
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777766654
No 224
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.09 E-value=4.8 Score=39.09 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=76.8
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
.+|..+.....|+.|+.+|.++++ ++|+...+..-| +.++...+++..|+.=+.++++ ..|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~-----ldpnca~~~anR---a~a~lK~e~~~~Al~Da~kaie--------~dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIE-----LDPNCAIYFANR---ALAHLKVESFGGALHDALKAIE--------LDPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHh-----cCCcceeeechh---hhhheeechhhhHHHHHHhhhh--------cCchhh
Confidence 345555667789999999999876 455554443222 3567888999999887777765 347777
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
..|++-|.....++++.+|...|++...+ -|+-|..+.....-+.+-++
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l-----~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKL-----APNDPDATRKIDECNKIVSE 121 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhc-----CcCcHHHHHHHHHHHHHHHH
Confidence 88888888888889999998887776543 45665544433333333333
No 225
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.96 E-value=6.6 Score=33.74 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=50.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHH
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 296 (335)
...++..+.+.+++++|+...+.++. ++.+.-..++.-.+||.+...+|++++|.+.+..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 34678889999999999998887765 5677778889999999999999999999887653
No 226
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.89 E-value=15 Score=40.09 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=28.4
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 255 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~ 255 (335)
+...|++++|..++......... +.|+ ..++..|+..|.+.|++++|.++++.+
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~g-i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHP-IDPD----HITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCC-CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556677777766655432111 1222 223445556666666666666665544
No 227
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.61 E-value=20 Score=31.88 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHH-hchhHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHhHHHHhcCChHHHHHHHHHH
Q 019809 235 LIKILM-ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 235 L~~~~~-~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~-~l~~La~l~~~~g~~~eA~~~l~~A 297 (335)
++..|- ++.++++|+.+++++-+.|. |...-..+. -+.+.|.....+++|.+|++.|++.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk---~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYK---GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 33566677776666655442 333333333 4456666666778888888877663
No 228
>PRK10941 hypothetical protein; Provisional
Probab=83.25 E-value=18 Score=32.87 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcC
Q 019809 227 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306 (335)
Q Consensus 227 ~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G 306 (335)
.+.++..+|-.+|...++|+.|+.....++. +.+++| .....-|.++..+|....|..-|+.-++ +-
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~-----~~ 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQ-----FDPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVE-----QC 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHH-----hC
Confidence 4467788899999999999999998887765 334555 2334456677777888888776665544 35
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 019809 307 TNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 307 ~~hp~~~~l~~~l~~~~~e 325 (335)
|+.|...-+...++.++..
T Consensus 246 P~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 246 PEDPISEMIRAQIHSIEQK 264 (269)
T ss_pred CCchhHHHHHHHHHHHhhc
Confidence 6778777777777777654
No 229
>PLN03077 Protein ECB2; Provisional
Probab=82.97 E-value=11 Score=40.07 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=61.1
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 276 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~ 276 (335)
+...|+.++|+.++++..+. -+.|+... ...+..++...|.+++|.+++..+.+. +| ..|.. .+|..
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~----~g-i~P~~-~~y~~ 630 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVES---GVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEK----YS-ITPNL-KHYAC 630 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHH----hC-CCCch-HHHHH
Confidence 44667888888888776542 23444333 345667788899999999888765532 23 33433 56788
Q ss_pred HhHHHHhcCChHHHHHHHHH
Q 019809 277 CGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 277 La~l~~~~g~~~eA~~~l~~ 296 (335)
|..++...|++++|.+++++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 88999999999999998876
No 230
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.54 E-value=7.6 Score=37.15 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=64.1
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHH---------HHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCC
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK---------LIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 267 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~---------L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~h 267 (335)
+...++.+.++..+.+.++ ++|.|...-.+... =+.-..+.|.+.+|.+.+...|.+ -|.+-
T Consensus 213 ~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i----dP~n~ 283 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI----DPSNK 283 (486)
T ss_pred cccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC----Ccccc
Confidence 3455677777777777765 46666544333222 122234568899999998888864 34444
Q ss_pred hHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 268 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 268 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
-..+..|.+.|.+...+|+.++|+.--.+|+.|
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 456778889999999999999998876666554
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.49 E-value=25 Score=36.08 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=31.9
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHH------------------HHHhhhhhcCCCChhHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTE------------------AVEILRITHGTNSPFMKELILKLE 320 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~------------------A~~il~~~~G~~hp~~~~l~~~l~ 320 (335)
.-.+..++|......-+.++|.++|.+ -++.+-+++..+|++.-.+-+++.
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHH
Confidence 334555666665555555555555443 356667788889988777666653
No 232
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.20 E-value=13 Score=34.68 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
+...|+.+|.+..+-..|+..+...++. +| .-...+..+|.++...++.++|.++|+++++..
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~----fP----~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDS----FP----FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhc----CC----chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 3445777787777777777666655542 22 222344566777778888888888888776643
No 233
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=82.18 E-value=4 Score=34.71 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=40.1
Q ss_pred CChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHH
Q 019809 224 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 270 (335)
Q Consensus 224 ~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~ 270 (335)
..+..+.++.+|..-|...|++..|+..|+.+++-..+..|..||.+
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 35667788899999999999999999999999999999999999975
No 234
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=81.86 E-value=30 Score=31.68 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=49.9
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM----ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 274 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~----~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l 274 (335)
..++++.|.+.++...+ +.+. ..+ .+|+.++. ..+.+.+|.-+++.+.+ .+|. ....+
T Consensus 143 ~~~R~dlA~k~l~~~~~-----~~eD-~~l----~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~~----t~~~l 204 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQ-----IDED-SIL----TQLAEAWVNLATGGEKYQDAFYIFEELSD----KFGS----TPKLL 204 (290)
T ss_dssp HTT-HHHHHHHHHHHHC-----CSCC-HHH----HHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHH
T ss_pred HcCCHHHHHHHHHHHHh-----cCCc-HHH----HHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccCC----CHHHH
Confidence 45677777766655432 2322 222 23444433 23467888887776433 2332 33557
Q ss_pred HHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 275 YTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 275 ~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+.+|..+..+|++++|+..+.+|++
T Consensus 205 ng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 205 NGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8889999999999999999999853
No 235
>PLN02789 farnesyltranstransferase
Probab=81.21 E-value=45 Score=31.06 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=31.2
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHH
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV 258 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~-~~~~Al~~~~~~l~~ 258 (335)
..+.+++|+.++.+++.+ .|.|+..-.. -..++..++ ++++|+.++.+++..
T Consensus 49 ~~e~serAL~lt~~aI~l-----nP~~ytaW~~---R~~iL~~L~~~l~eeL~~~~~~i~~ 101 (320)
T PLN02789 49 SDERSPRALDLTADVIRL-----NPGNYTVWHF---RRLCLEALDADLEEELDFAEDVAED 101 (320)
T ss_pred cCCCCHHHHHHHHHHHHH-----CchhHHHHHH---HHHHHHHcchhHHHHHHHHHHHHHH
Confidence 455778888888877653 4555443332 233344445 567777777776654
No 236
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.17 E-value=11 Score=27.05 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc--CCCChhHHHHHHHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH--GTNSPFMKELILKLEEA 322 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~--G~~hp~~~~l~~~l~~~ 322 (335)
.|..+...|.-+-..|++++|+.+|++|++.|.... -||++.-.-...++.+-
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY 59 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEY 59 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 355566667777788999999999999999888653 25666544445555443
No 237
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.01 E-value=26 Score=36.83 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=71.5
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH-H
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-L 270 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h-~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~-~ 270 (335)
.|+...++..+.+|..+..++........+.-. ...+.....-+.+....++.++|+++++.++. .+|..++. .
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~----~L~~~~~~~r 496 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV----QLPEAAYRSR 496 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcccccchhh
Confidence 345556677888888877766543221111111 11122222233455677999999999998775 34544444 4
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
.+.+..+|.+..-.|++.+|..+.++|.++.++.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 6678899999999999999999999999887665
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.99 E-value=37 Score=33.50 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC--
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-- 266 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~-- 266 (335)
.++..|++ ..+.+..++.-++++++. +..+.++-.|+.- ...-..+|.++++++++.-+..++..
T Consensus 173 ~IMq~AWR---ERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~ 239 (539)
T PF04184_consen 173 EIMQKAWR---ERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQF 239 (539)
T ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhh
Confidence 34444543 235566666666666642 2223332222211 12234667777777777666666532
Q ss_pred --C-------------hHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 267 --H-------------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 267 --h-------------p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
| -.......+||..++.+|+.+||++.+++-+.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk 287 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK 287 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 1 11234567899999999999999999876654
No 239
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.13 E-value=33 Score=30.56 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHH
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 294 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l 294 (335)
..+...++..|...|+|++|+.+++.+...|+ -.+++......+..|...+...|+.++.+.+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr--~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYR--REGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34456789999999999999999999866554 34788888888899999999999888876653
No 240
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=80.05 E-value=13 Score=26.94 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCC------hhH---HHHHHHHHHHHHHhccc
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS------PFM---KELILKLEEAQAEASYK 329 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~h------p~~---~~l~~~l~~~~~el~~~ 329 (335)
.|....+.|.-+-..|..++|+.+|++++.++.....-.. +.+ +.+.+++.....+++++
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R 75 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR 75 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555668888888888888888887765433 223 35666666666666554
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.45 E-value=18 Score=35.56 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHH
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 296 (335)
..++..|+.+..++|+.++|++.++.++.. +|..+ .....++|-..+..++.+.++..++.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke----~p~~~--~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKE----FPNLD--NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhh----CCccc--hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 567778999999999999999999987742 34211 223567888888899999988887766
No 242
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=79.08 E-value=14 Score=37.39 Aligned_cols=96 Identities=19% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
.++.++.+....+.|...+...+.+++. +|.|...+.+. +-.+..+|+-++|.++++..+. +.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k-----~~eHgeslAmk---GL~L~~lg~~~ea~~~vr~glr--------~d~ 72 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK-----FPEHGESLAMK---GLTLNCLGKKEEAYELVRLGLR--------NDL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----CCccchhHHhc---cchhhcccchHHHHHHHHHHhc--------cCc
Confidence 4555666666777777777777776652 45666654432 3346678999999999887665 222
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.-.+-+.-+|.++..-.+|++|++.|+.|+.|
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 22344566788888889999999999999985
No 243
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.03 E-value=56 Score=30.99 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccC---------------------CCChhHHHHHHHHHHHHHhchh
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH---------------------PFSVNLMQTREKLIKILMELED 244 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~---------------------~~h~~l~~~~~~L~~~~~~~~~ 244 (335)
.+..+...+.....+|+++.|..+.++++-..++.+| +.|.....+...-+....+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3566777777777889999998888887654333222 2355556677777778888899
Q ss_pred HHHHHHHHHHHHH
Q 019809 245 WKEALAYCQLTIP 257 (335)
Q Consensus 245 ~~~Al~~~~~~l~ 257 (335)
|.-|+++|+-++.
T Consensus 119 ~rTAlE~~KlLls 131 (360)
T PF04910_consen 119 WRTALEWCKLLLS 131 (360)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887553
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=78.86 E-value=18 Score=35.29 Aligned_cols=68 Identities=9% Similarity=-0.036 Sum_probs=52.5
Q ss_pred cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 221 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 221 l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
+++.++. ++..++.+....++++.|....++++. .+|..+..++-.|.+....|+.++|...+++|+.
T Consensus 333 ld~~Da~---a~~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 333 ITTVDGK---ILAIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cCCCCHH---HHHHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455543 345566677777889999998888775 4577778889999999999999999999988644
No 245
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.84 E-value=24 Score=31.47 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcc
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~ 328 (335)
..........||.-+...|++++|.++|+.+...++.. ....+..+++.+|-++...+..
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCC
Confidence 56667788899999999999999999999995555433 4677888888888888766553
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.45 E-value=2.7 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=20.4
Q ss_pred CCCChhHHHHHHHHHHHHHhchhHHHHH
Q 019809 222 HPFSVNLMQTREKLIKILMELEDWKEAL 249 (335)
Q Consensus 222 ~~~h~~l~~~~~~L~~~~~~~~~~~~Al 249 (335)
.|+|+ .++.+|+.+|...|++++|+
T Consensus 9 ~P~n~---~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNA---EAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCH---HHHHHHHHHHHHCcCHHhhc
Confidence 55554 45788999999999999986
No 247
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=77.60 E-value=25 Score=37.48 Aligned_cols=99 Identities=22% Similarity=0.106 Sum_probs=67.1
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHHHHhcCCCCh
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIPVYQRVYPQFHP 268 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~-~~~Al~~~~~~l~~~~~~~p~~hp 268 (335)
..+.|.......+|+++++..+++++ ..|+|+. +.--|+.++...+. .++|-+.+..+.++ .|
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk-----~dpdNYn---A~vFLGvAl~sl~q~le~A~ehYv~AaKl--------dp 68 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLK-----EDPDNYN---AQVFLGVALWSLGQDLEKAAEHYVLAAKL--------DP 68 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHh-----cCCCcch---hhhHHHHHHHhccCCHHHHHHHHHHHHhc--------Ch
Confidence 34444445566799999999888876 4666653 24457777887776 99999988877653 35
Q ss_pred HHHHHHHHHhHHHHh---cCChHHHHHHHHHHHHhhhhh
Q 019809 269 LLGLQYYTCGKLEWF---LGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 269 ~~~~~l~~La~l~~~---~g~~~eA~~~l~~A~~il~~~ 304 (335)
.-.+++--|+.+|.. .-.++++-+.|++++.+++..
T Consensus 69 dnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 69 DNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 (1238)
T ss_pred hhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence 555666667776644 345677777777777776644
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.58 E-value=18 Score=32.73 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=58.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 277 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~L 277 (335)
+.-|+.+.|...++++++.-.++-+-.+..+ +.-+.+.++.-+.++.+|...+.+++ .-.|..+++-++-
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~--V~~n~a~i~lg~nn~a~a~r~~~~i~--------~~D~~~~~a~NnK 292 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM--VLMNSAFLHLGQNNFAEAHRFFTEIL--------RMDPRNAVANNNK 292 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHH--HHhhhhhheecccchHHHHHHHhhcc--------ccCCCchhhhchH
Confidence 3557777777777766543222211111111 12233445666677777766555433 3445566777888
Q ss_pred hHHHHhcCChHHHHHHHHHHHHhh
Q 019809 278 GKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 278 a~l~~~~g~~~eA~~~l~~A~~il 301 (335)
|..+...|+..+|++.++.++.+.
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 888899999999999999888754
No 249
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=77.50 E-value=8.9 Score=40.69 Aligned_cols=98 Identities=15% Similarity=0.045 Sum_probs=67.1
Q ss_pred cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 221 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 221 l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
+....+.-..++..|+..|...+++++|+++|+..++ .+|.....++-+|.++...+++.+|.-. .++++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 4444556677889999999999999999999997665 4555556788888899888888877665 55544
Q ss_pred hhhhc------------CCCChhHHHHHHHHHHHHHHhccc
Q 019809 301 LRITH------------GTNSPFMKELILKLEEAQAEASYK 329 (335)
Q Consensus 301 l~~~~------------G~~hp~~~~l~~~l~~~~~el~~~ 329 (335)
..... | +++.-+..+..|+++...+...
T Consensus 93 ~~~~~~~~~ve~~~~~i~-~~~~~k~Al~~LA~~Ydk~g~~ 132 (906)
T PRK14720 93 FSQNLKWAIVEHICDKIL-LYGENKLALRTLAEAYAKLNEN 132 (906)
T ss_pred cccccchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHHcCCh
Confidence 43332 2 2344445566666666555443
No 250
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=77.09 E-value=1.6 Score=42.14 Aligned_cols=70 Identities=6% Similarity=0.105 Sum_probs=57.4
Q ss_pred HHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHH
Q 019809 213 IEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW 282 (335)
Q Consensus 213 ~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~ 282 (335)
++-++.++++|.|+.+.....--+.+|.++|+++..+++...+++.-++.+-+.+|.++..+...+.+..
T Consensus 321 aLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 321 ALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 4556778999999877543333445688999999999999999999999999999999998888887753
No 251
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.92 E-value=3.3 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+.+|+.+|..+|+.+.|.+....++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45799999999999999998887763
No 252
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=76.71 E-value=62 Score=32.36 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=63.4
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHH--HHHHH----------
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI--PVYQR---------- 261 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l--~~~~~---------- 261 (335)
|.-+...|++++|++...+++.. .+.+...+..-++++-..|++.+|.+....+. +...|
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 33344557777777777666542 23334455556667777777777766544321 11111
Q ss_pred ---------------hcC-CCChH-------HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcC
Q 019809 262 ---------------VYP-QFHPL-------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 306 (335)
Q Consensus 262 ---------------~~p-~~hp~-------~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G 306 (335)
+.- ...|. -.|...+.|..+..+|++..|++.+.....++...+-
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 111 11222 2455567799999999999999999888888776643
No 253
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.64 E-value=11 Score=36.26 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 305 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~ 305 (335)
+.-.|.+++.-+|||..|++....+--....+|...-+.....+|.+|-.|..+++|.+|++.+...+--+.++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334566777889999999987665432333345444444445688899999999999999999998877666554
No 254
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=76.57 E-value=5.1 Score=38.04 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHH
Q 019809 246 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 319 (335)
Q Consensus 246 ~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l 319 (335)
.+|+.|.+++.. .--|.....+|-++..||.++- ..-.+-.++|++|-+|+....+..|..+.+++..|
T Consensus 335 ~~Al~yL~kA~d---~ddPetWv~vAEa~I~LGNL~d--~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 335 KKALEYLKKAQD---EDDPETWVDVAEAMIDLGNLYD--NESKEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHH---S--TTHHHHHHHHHHHHHHH-S--SHHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHhhc---cCChhHHHHHHHHHhhhhcccc--cchHHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 344444444433 2234445556667777777663 23355677999999999999999999999998876
No 255
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=26 Score=34.74 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCC-hHHHHHHHHHHHHhhhhhcCCCChhHH
Q 019809 235 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVEILRITHGTNSPFMK 313 (335)
Q Consensus 235 L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~-~~eA~~~l~~A~~il~~~~G~~hp~~~ 313 (335)
++-++..+|+-..|..++...++- +..--.++-.+..++|+||.++|.++. ..+|..+|.+|-+ ++.+..+-.
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~-----~~~dY~len 528 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE-----YASDYELEN 528 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh-----hccccchhh
Confidence 344567788888888877776654 333445666667889999999999988 9999999999965 555655555
Q ss_pred HHHHHHHHH
Q 019809 314 ELILKLEEA 322 (335)
Q Consensus 314 ~l~~~l~~~ 322 (335)
.+.-+++.+
T Consensus 529 RLh~rIqAA 537 (546)
T KOG3783|consen 529 RLHMRIQAA 537 (546)
T ss_pred HHHHHHHHH
Confidence 554444444
No 256
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=76.23 E-value=19 Score=38.29 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=75.3
Q ss_pred hhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 019809 196 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 275 (335)
Q Consensus 196 ~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~ 275 (335)
.+...|.+..|++.+.++. .+.|.|.. .+...+......|.|++|+..+..++.......+ .-...|-.+.
T Consensus 605 AY~~sGry~~AlKvF~kAs-----~LrP~s~y---~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gLaE~~i 675 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKAS-----LLRPLSKY---GRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGLAESVI 675 (1238)
T ss_pred HHHhcCceehHHHhhhhhH-----hcCcHhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 3456677777777776653 34454443 3555666677889999999998888876655444 3345667888
Q ss_pred HHhHHHHhcCChHHHHHHHHHHHHhhhhhcC
Q 019809 276 TCGKLEWFLGDTENAIKSMTEAVEILRITHG 306 (335)
Q Consensus 276 ~La~l~~~~g~~~eA~~~l~~A~~il~~~~G 306 (335)
++++.+...|-+..|+++++++++++.+..-
T Consensus 676 r~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 676 RDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887654
No 257
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.88 E-value=4.7 Score=22.20 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhchhHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQ 253 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~ 253 (335)
++..|+.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999988765
No 258
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.53 E-value=22 Score=31.90 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
+|..+...|++++|++.|..++.- +|+|..+..- .++ +...+|+-.+|++.....+ ..|+.+| -
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~d-----dpt~~v~~KR--KlA-ilka~GK~l~aIk~ln~YL----~~F~~D~----E 155 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLED-----DPTDTVIRKR--KLA-ILKAQGKNLEAIKELNEYL----DKFMNDQ----E 155 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhcc-----CcchhHHHHH--HHH-HHHHcCCcHHHHHHHHHHH----HHhcCcH----H
Confidence 345556678888888888877652 3556554431 222 2334455556665443333 3344443 3
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHH
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAV 298 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~ 298 (335)
++..|+.+|...|+++.|.--|++.+
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 57889999999999999998887764
No 259
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.46 E-value=19 Score=33.09 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCC
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 308 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~ 308 (335)
......+..|...|.+.+|++++++++. .||..-..+..|-.++...|+--.|.+.|++-...++..+|-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 3444566778889999999999998875 5666666666777788888999999999999999999999965
No 260
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.19 E-value=6.4 Score=21.03 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPV 258 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~ 258 (335)
+...++.++...+++++|...++.++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3456788899999999999999887753
No 261
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.00 E-value=74 Score=32.43 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=61.6
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 278 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La 278 (335)
...++++|...+.+...+..+ +...-.-..+...+++++...+... |+.++.+.+..++. +|..+......+.+..
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~ 147 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQ 147 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 446889999888877666544 2222223556666777777766555 88888888887765 5555555554444333
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhh
Q 019809 279 KLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 279 ~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
..... +++..|...+++....-.
T Consensus 148 l~~~~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 148 LALQH-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHhc-ccHHHHHHHHHHHHHHhh
Confidence 22222 677777777776555443
No 262
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.81 E-value=7.9 Score=25.72 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
.++.|+..+.++|+|++|.+++..+|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 356688889999999999999998886
No 263
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=74.77 E-value=8 Score=32.82 Aligned_cols=50 Identities=18% Similarity=-0.051 Sum_probs=41.6
Q ss_pred cCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhH
Q 019809 263 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 312 (335)
Q Consensus 263 ~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~ 312 (335)
-+...|..-..+.+|..-|..+|+++-|+...+.|++-+..+.|.+||.+
T Consensus 132 ~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 132 QGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 35677888888999998899999999999999999999999999999953
No 264
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=74.66 E-value=96 Score=31.79 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHhHHHHhcCChHHHHHHHH---------------HHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 276 TCGKLEWFLGDTENAIKSMT---------------EAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 276 ~La~l~~~~g~~~eA~~~l~---------------~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
+.|.+-..+|+.+.|+..|. ++++++++.||++. -++++++.-..+
T Consensus 663 rFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned-T~keMLRikRsv 723 (835)
T KOG2047|consen 663 RFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED-TYKEMLRIKRSV 723 (835)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHHH
Confidence 34555566788888888765 57888999999854 355555444333
No 265
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=74.65 E-value=13 Score=26.76 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc-CCCChhHHHH-HHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKEL-ILKL 319 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~-G~~hp~~~~l-~~~l 319 (335)
.|..+..-|.-.-..|++++|..+|.+|++.+.... +...|..+++ ..++
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki 56 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKI 56 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 345566667677788999999999999999988643 4344444543 3444
No 266
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=73.99 E-value=65 Score=32.28 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh-hcCCCCh-hHHHHHHHHHHH
Q 019809 246 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI-THGTNSP-FMKELILKLEEA 322 (335)
Q Consensus 246 ~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~-~~G~~hp-~~~~l~~~l~~~ 322 (335)
..+++++.+++...+.+|...|. +-|.-+|.-+...+++.+|+..+-+|.++++. .|+.+.. +++|++.-..++
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneL 371 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANEL 371 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHH
Confidence 46788999999999999996654 23455677788899999999999988777764 4665543 666666555444
No 267
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=73.94 E-value=22 Score=25.15 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 305 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~ 305 (335)
.|..+..-|.-+-..|++++|..+|.+|++.+....
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 345555556666678999999999999999888754
No 268
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=73.79 E-value=46 Score=34.06 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=22.1
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
..+++-+.+.+.++..++|++++++|+.++
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 446666777777888888888888877755
No 269
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.41 E-value=14 Score=34.75 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=37.8
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHH
Q 019809 236 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIK 292 (335)
Q Consensus 236 ~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~ 292 (335)
+..|..+|.|++|+..|.+.+.++. +.|-.|..+|++|+++-+....-.+.++|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3468889999999999998886542 2234455667777777666555555555554
No 270
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=72.77 E-value=2.9 Score=26.75 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=18.6
Q ss_pred cCccCCCCCCcceecCCCCCccccCcCCCCC
Q 019809 145 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 175 (335)
Q Consensus 145 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 175 (335)
-|+|+ +|+..+..++....+.|+.||...
T Consensus 3 ~y~C~--~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 3 EYKCA--RCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred EEECC--CCCCEEEECCCCCceECCCCCCeE
Confidence 35675 477666555444467888888744
No 271
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.39 E-value=21 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=36.1
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc-CCCChhHHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKELI 316 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~-G~~hp~~~~l~ 316 (335)
.|+.+..-|.-.-..|++++|..+|..|++.+.... +...|..++.+
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~l 52 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEAL 52 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 455666667667778999999999999999988754 56677776543
No 272
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.80 E-value=46 Score=33.89 Aligned_cols=104 Identities=15% Similarity=0.043 Sum_probs=66.3
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH
Q 019809 190 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 269 (335)
Q Consensus 190 l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~ 269 (335)
++..|.+.....+|..++..|...++... -+..+-..+....++.-+|..+++.++|+++.+++-+ +-| ..|.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~--~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----~d~-~~~l 429 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDII--SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----VDR-QSPL 429 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----hcc-ccHH
Confidence 34555556666678888888776654211 1122344567778888999999999999998876543 322 3343
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
.- +.+-++...-|+-++|...+.+...++..
T Consensus 430 ~q---~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 430 CQ---LLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HH---HHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 33 33344455567888888877776666544
No 273
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.75 E-value=16 Score=34.37 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=56.2
Q ss_pred hhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 019809 196 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 275 (335)
Q Consensus 196 ~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~ 275 (335)
.+.+..+|.-|+++++..+.+.+ -.--.+...++.++..+|+|++|+..+.-+.. ...|. +-...
T Consensus 31 dfls~rDytGAislLefk~~~~~-------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~~-~el~v 95 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDR-------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDAP-AELGV 95 (557)
T ss_pred HHHhcccchhHHHHHHHhhccch-------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCCC-cccch
Confidence 34566788888888765442211 11123345688889999999999887665443 11111 22346
Q ss_pred HHhHHHHhcCChHHHHHHHHHH
Q 019809 276 TCGKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 276 ~La~l~~~~g~~~eA~~~l~~A 297 (335)
+||...+.+|.|.+|...-.+|
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC
Confidence 7888888889999988876654
No 274
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.41 E-value=7 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=21.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
...+...|.+.|++++|.+.+.+..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45688899999999999998887653
No 275
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.24 E-value=30 Score=31.93 Aligned_cols=77 Identities=12% Similarity=-0.029 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHH
Q 019809 202 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 281 (335)
Q Consensus 202 ~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~ 281 (335)
+|++++.+... .|..++.....+..|+.+|...++|..|...+.++ +..||..+...+--|+-+
T Consensus 25 ry~DaI~~l~s--------~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL--------~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 25 RYADAIQLLGS--------ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL--------GQLHPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHH--------HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhChHHHHHHHHHHHHH
Confidence 55566554322 34445655666778999999999999998877763 456777766555556666
Q ss_pred HhcCChHHHHHHH
Q 019809 282 WFLGDTENAIKSM 294 (335)
Q Consensus 282 ~~~g~~~eA~~~l 294 (335)
...+.+.+|...+
T Consensus 89 Y~A~i~ADALrV~ 101 (459)
T KOG4340|consen 89 YKACIYADALRVA 101 (459)
T ss_pred HHhcccHHHHHHH
Confidence 6677777666543
No 276
>PLN02789 farnesyltranstransferase
Probab=71.05 E-value=56 Score=30.41 Aligned_cols=82 Identities=10% Similarity=0.049 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhH
Q 019809 202 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED--WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 279 (335)
Q Consensus 202 ~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~--~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~ 279 (335)
++++++..+.+++.. .|.++.+- .+-..++...++ ++++++++.++++.- |.-..++...+-
T Consensus 87 ~l~eeL~~~~~~i~~-----npknyqaW---~~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w 150 (320)
T PLN02789 87 DLEEELDFAEDVAED-----NPKNYQIW---HHRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQW 150 (320)
T ss_pred hHHHHHHHHHHHHHH-----CCcchHHh---HHHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHH
Confidence 356666666655542 34444332 222222333343 255666666655422 333344556666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 019809 280 LEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 280 l~~~~g~~~eA~~~l~~A~~ 299 (335)
++..+|++++|+.++.++++
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 66667778888888887766
No 277
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=70.66 E-value=2.5 Score=40.54 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCEEEEEeccccCCCCeEEEeecCCC
Q 019809 80 GRLAVVRAVQHVPKGAEVLISYIETA 105 (335)
Q Consensus 80 ~~~~~~~a~~~i~~g~el~~~Y~~~~ 105 (335)
++.+..+|+++|++|+||.+=|++.+
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccch
Confidence 34689999999999999999998765
No 278
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.23 E-value=20 Score=24.82 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=33.9
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCC-ChhHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKE 314 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~-hp~~~~ 314 (335)
.|..+.+.|.-.-..|++++|..+|.+|++.+......+ .|..++
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~ 49 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQ 49 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 456666777777889999999999999999988775533 444443
No 279
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.77 E-value=15 Score=34.53 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=48.8
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHH
Q 019809 235 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAI 291 (335)
Q Consensus 235 L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~ 291 (335)
+++-.+.++++++|..-+..+..+...+||..|-..+-.+|.-|+.++.+++.+.++
T Consensus 47 ~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 47 AGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred hhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566789999999999999999999999999999999999999988887666554
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=69.43 E-value=88 Score=28.75 Aligned_cols=113 Identities=15% Similarity=0.046 Sum_probs=72.5
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHHh-----
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP-VYQRV----- 262 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~-~~~~~----- 262 (335)
.....+......|.++.|...+.++.... .+.+.....+...-+......|+-.+|+...+..+. .....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~----~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLN----PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccC----CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34455555678889998887766654421 111111222333445667788899999998887777 33322
Q ss_pred --------------------cCCCChHHHHHHHHHhHHHHhc------CChHHHHHHHHHHHHhhhhhc
Q 019809 263 --------------------YPQFHPLLGLQYYTCGKLEWFL------GDTENAIKSMTEAVEILRITH 305 (335)
Q Consensus 263 --------------------~p~~hp~~~~~l~~La~l~~~~------g~~~eA~~~l~~A~~il~~~~ 305 (335)
-.......+..+..+|+..... +..+++.+.|.+|..+....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1122345677888888888888 888999999999988755443
No 281
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=69.17 E-value=31 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=27.8
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 305 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~ 305 (335)
|..+.+-|.-.-..|++++|+.+|..|++.+....
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 44555566666678999999999999999988765
No 282
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=69.03 E-value=1.1e+02 Score=29.27 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=63.6
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH--hchhHHHHHHHHHHHH-------------
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTI------------- 256 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~--~~~~~~~Al~~~~~~l------------- 256 (335)
..+..+...++|..|..++..+... .+.+........+..|++.|. +.-++++|.++..+.+
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhh
Confidence 3444566778999999988877642 344444444555666777664 5667788888877211
Q ss_pred ------HHHHHhcC------------CCChHHHH--HHHHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 257 ------PVYQRVYP------------QFHPLLGL--QYYTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 257 ------~~~~~~~p------------~~hp~~~~--~l~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
.....+.| ..+|...+ -++.-|.--..+|+|+.|...+-+|++++.
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~ 277 (380)
T TIGR02710 212 ELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIV 277 (380)
T ss_pred HHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 11111222 12333221 112223333467999999999888877654
No 283
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=68.72 E-value=61 Score=32.39 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
..+.-+|..+...|++++|...+++|+++-
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 445666777888899999999999999876
No 284
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.25 E-value=4.9 Score=37.44 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 266 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~ 266 (335)
....--.|......|.+++|+..+-.+..+ ++.....+..=+.++..++.+..|+.=|..++++-.
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~------ 179 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP------ 179 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccCc------
Confidence 334445677778889999998887766543 333333344455677888999999998888776432
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..+--|---|.....+|..++|.+.|..|..
T Consensus 180 --Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 180 --DSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred --ccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 2222222223444455666777776666543
No 285
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.80 E-value=24 Score=31.27 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHH
Q 019809 204 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELEDWKEALAYCQLTIPVY 259 (335)
Q Consensus 204 ~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~-~~~~~~~~Al~~~~~~l~~~ 259 (335)
+.|...|+.+..+....++|.||..+....+.+.-| --.++.++|.++.+.+++-.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 567778888888877779999998888777776655 45799999999999887644
No 286
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=67.34 E-value=29 Score=24.81 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh-cCCCChhHHHHH-HHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSPFMKELI-LKL 319 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~-~G~~hp~~~~l~-~~l 319 (335)
.|..+...|.-.-..|++++|..+|..+++.+... .+...|..++.. .++
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~ 56 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKI 56 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 45556666666667799999999999999999874 467777776644 444
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.84 E-value=15 Score=31.84 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=44.8
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 238 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 238 ~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
-+...|+|++|..-|..+|++... ...-.+.+.|.+-|.....+++.+.|++-..+|+++
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~---~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPS---TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCcc---ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 345679999999999988876632 333566778888888888888888888866666553
No 288
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=65.81 E-value=24 Score=30.34 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 228 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 228 l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
+..-+..|+....+.|++.+|..++++++... | ...| -.+..+++.....++..+|...+++-.+.-
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~---f-A~d~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI---F-AHDA---AMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c-CCCH---HHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 34456678899999999999999999877532 1 2233 335678888999999999999888765543
No 289
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=65.66 E-value=69 Score=25.71 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=59.8
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 276 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~ 276 (335)
+...|+++++...+.++... .+...............+...+++++|+......+...... ....+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ 207 (291)
T COG0457 140 LYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLN 207 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHH
Confidence 34567777887777776331 11111222333333444566778888888777766644332 4455677
Q ss_pred HhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 277 CGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 277 La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
++..+...+++++|...+.+++.....
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 788888888888888888888876654
No 290
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.38 E-value=24 Score=32.53 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=46.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..+.+-+....|+++.|++-+..++. ++++.|.++ |++|..+...+++..|.++..+.++
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlq-----vsGyqpllA---YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQ-----VSGYQPLLA---YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHh-----hcCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444455567899999988887766 578889776 7889999999999999998777654
No 291
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.97 E-value=23 Score=25.44 Aligned_cols=47 Identities=34% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHH-HHHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE-LILKL 319 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~-l~~~l 319 (335)
.|+.+.+-|.-.-..|++++|..+|..|++.+... .+|..++ +..++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e---kn~~~k~~i~~K~ 52 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT---SNETMDQALQTKL 52 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh---cChhhHHHHHHHH
Confidence 34555555656667899999999999999998884 4554444 33555
No 292
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.55 E-value=1.5e+02 Score=29.31 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=55.7
Q ss_pred HhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChh
Q 019809 240 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 311 (335)
Q Consensus 240 ~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~ 311 (335)
..++++.+|..+.++.++... --.....+|..+.-||.+..-.|+..++++..+-|++.-++.+ |||.
T Consensus 456 f~qn~lnEaK~~l~e~Lkman--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~--Di~v 523 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMAN--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP--DIPV 523 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC--CchH
Confidence 467899999999999998762 2245677888888899999999999999999999999888874 5553
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.10 E-value=70 Score=30.13 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=31.3
Q ss_pred HHHHHhcCCCChHH---HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 257 PVYQRVYPQFHPLL---GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 257 ~~~~~~~p~~hp~~---~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
...++++|.+.|.. ....-.++--+.+.|-|++|++.-.+|++|=+.
T Consensus 158 ~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 158 NAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF 207 (491)
T ss_pred hHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc
Confidence 45667788765554 333333344455679999999999998887554
No 294
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=64.00 E-value=1.1e+02 Score=28.88 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChHHH-HHH-HHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHH
Q 019809 244 DWKEALAYCQLTIPVYQRVYPQFHPLLG-LQY-YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 321 (335)
Q Consensus 244 ~~~~Al~~~~~~l~~~~~~~p~~hp~~~-~~l-~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~ 321 (335)
..++.+.-.+..+.-++.-.+-..|... ... -.++.+ ..++.+ ++.-+.-+...+|++||.+..+...++.
T Consensus 181 ~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L---~~~l~~----~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 181 EAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL---EGELIR----VQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 3444444555556667777776666542 111 112222 122222 2333344556789999999999999988
Q ss_pred HHHHhcccc
Q 019809 322 AQAEASYKL 330 (335)
Q Consensus 322 ~~~el~~~~ 330 (335)
++..+....
T Consensus 254 l~~~i~~e~ 262 (362)
T TIGR01010 254 LRKQIDEQR 262 (362)
T ss_pred HHHHHHHHH
Confidence 887775543
No 295
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=63.73 E-value=32 Score=24.39 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc-CCCChhHHH
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE 314 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~-G~~hp~~~~ 314 (335)
.|..+..-|.-.-..|++++|..+|.+|++.+.... ....|..+.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~ 50 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKE 50 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 345566666666778999999999999999998764 333444443
No 296
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=62.66 E-value=5.7 Score=21.78 Aligned_cols=21 Identities=24% Similarity=0.702 Sum_probs=12.4
Q ss_pred CCcceecCCCCCccccCcCCC
Q 019809 153 CSGFLLRDSDDKGFTCQQCGL 173 (335)
Q Consensus 153 C~g~~~~~~~~~~~~C~~C~~ 173 (335)
|+..+.|......+.|++||.
T Consensus 4 C~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 4 CGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CCCcccCcccCceEeCCCCCC
Confidence 444454444455677888874
No 297
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.59 E-value=55 Score=23.49 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhc
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 219 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~ 219 (335)
....+...|......|++++|+..|..+......
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3445566777777889999999999998876544
No 298
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.39 E-value=49 Score=32.11 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=61.7
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHH-------HHHHhch------hHHHHHHHHHHH
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLI-------KILMELE------DWKEALAYCQLT 255 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~-------~~~~~~~------~~~~Al~~~~~~ 255 (335)
.+.++|..++....|.+|+.++-.+.+.+ -.....++..-++.+ -+|..+. |-+.-+..|++-
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F----~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESF----SLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 45667777777778888887766655432 112223333333322 2233332 222222233322
Q ss_pred HH--------HHHHhcCCCChHHHHHHH-H--HhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 256 IP--------VYQRVYPQFHPLLGLQYY-T--CGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 256 l~--------~~~~~~p~~hp~~~~~l~-~--La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
.. -+..+-|+.+|.+++.+- . -|.+.+++|+..+|-..|+.|..-+...
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 21 111233677888876322 2 2778899999999999999887766543
No 299
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=62.18 E-value=15 Score=20.67 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=21.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
.+.+...|.+.|++++|.+++.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999887643
No 300
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=61.82 E-value=27 Score=34.42 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHH
Q 019809 250 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 298 (335)
Q Consensus 250 ~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 298 (335)
..+++++......||. -++.++.-|+++...|+.++|+..+.+|+
T Consensus 250 ~~a~~lL~~~~~~yP~----s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPN----SALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 3445555555555552 22445556666666666666666666655
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.64 E-value=83 Score=31.91 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=52.1
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHhc----CCCChHHHHH--------HHHHhHH-HHhcCChHHHHHHHHHH--
Q 019809 233 EKLIKILMELEDWKEALAYCQLTIPVYQRVY----PQFHPLLGLQ--------YYTCGKL-EWFLGDTENAIKSMTEA-- 297 (335)
Q Consensus 233 ~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~----p~~hp~~~~~--------l~~La~l-~~~~g~~~eA~~~l~~A-- 297 (335)
..|+.+.+..+++..|.+...++.+..--++ .++++.+... .+|+|-+ ++..|+++++.++|.+.
T Consensus 670 ~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 670 RQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 4577777788888888887776655332221 1333322110 1122222 45679999999998886
Q ss_pred ---HHhhhhhcCCCChhHHHHHHHHH
Q 019809 298 ---VEILRITHGTNSPFMKELILKLE 320 (335)
Q Consensus 298 ---~~il~~~~G~~hp~~~~l~~~l~ 320 (335)
...+-++|+|+ .+.++..++.
T Consensus 750 ~peAal~ArtYlps--~vs~iv~~wk 773 (794)
T KOG0276|consen 750 LPEAALFARTYLPS--QVSRIVELWK 773 (794)
T ss_pred CcHHHHHHhhhChH--HHHHHHHHHH
Confidence 56677888884 4566665553
No 302
>PF13041 PPR_2: PPR repeat family
Probab=61.58 E-value=18 Score=23.02 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+.+.++..|.+.|++++|.+++++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467788999999999999999888663
No 303
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=60.21 E-value=16 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+++.++.++.+.|+++.|..++....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466788899999999999888776543
No 304
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.36 E-value=63 Score=29.76 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=51.1
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 264 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p 264 (335)
.+...+......|.+.+|.++.++++. ++|-+ -.....|++++...||--.|...+.+.-...++-+|
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt-----ldpL~---e~~nk~lm~~la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT-----LDPLS---EQDNKGLMASLATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh-----cChhh---hHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhC
Confidence 344556666788999999999988865 33332 233445778889999988999999988888888887
No 305
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=58.85 E-value=55 Score=25.88 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHhHHHHhc-CChHHHHHHH------------HHHHHhhhhhcCCCChhH-HHHHHHHHHHHHHhccc
Q 019809 264 PQFHPLLGLQYYTCGKLEWFL-GDTENAIKSM------------TEAVEILRITHGTNSPFM-KELILKLEEAQAEASYK 329 (335)
Q Consensus 264 p~~hp~~~~~l~~La~l~~~~-g~~~eA~~~l------------~~A~~il~~~~G~~hp~~-~~l~~~l~~~~~el~~~ 329 (335)
...+|--|..|.+++++.... +...+.++++ .||+.|+....+..++.. ..+.+....+ +++...
T Consensus 12 dd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~I-k~~~~f 90 (122)
T cd03572 12 DDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQI-RECANY 90 (122)
T ss_pred CCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHH-HHHHHc
Confidence 355566666666666665553 4444555443 356666666555555433 3444444433 334444
Q ss_pred ccC
Q 019809 330 LSS 332 (335)
Q Consensus 330 ~~~ 332 (335)
+..
T Consensus 91 ~g~ 93 (122)
T cd03572 91 KGP 93 (122)
T ss_pred CCC
Confidence 443
No 306
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.58 E-value=1.5e+02 Score=27.12 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 295 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 295 (335)
+++.++..+...+.|.-.+..+.++++ .+|+..|.+ ...||.+.+..|+.+.|..+++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~----~~~e~~p~L---~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQEPQL---LSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH----hCCcccHHH---HHHHHHHHHhcccHHHHHHHHH
Confidence 344455555556666666666555554 455555544 3455666666666666666655
No 307
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=58.46 E-value=92 Score=24.76 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=47.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCC---ChH-HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCC
Q 019809 242 LEDWKEALAYCQLTIPVYQRVYPQF---HPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 309 (335)
Q Consensus 242 ~~~~~~Al~~~~~~l~~~~~~~p~~---hp~-~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~h 309 (335)
-|.|++|..-|+++.++.+.+=+.. |-- =++-+--|+..+..+|+|++++..-.+|+.-+-+. |.=|
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~ 92 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELH 92 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TT
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccc
Confidence 4679999999999999876554432 222 25566778888999999999999988888877665 4333
No 308
>PF12854 PPR_1: PPR repeat
Probab=58.25 E-value=19 Score=21.16 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHH
Q 019809 230 QTREKLIKILMELEDWKEALAYCQL 254 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~ 254 (335)
.+++.|...|.+.|++++|.++..+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3467788999999999999998764
No 309
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=58.17 E-value=1.6e+02 Score=27.42 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
..|.+++.+|..+...+++.+|+..|+.|...++..
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 456777888888888889999999999888777655
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=57.95 E-value=72 Score=33.68 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=46.2
Q ss_pred CChhHHHHHHHHHHHHHhchhHHHHHHHHHHHH----HHHHHhcCCCChHHHHHHHH---------HhHHHHhcCChHHH
Q 019809 224 FSVNLMQTREKLIKILMELEDWKEALAYCQLTI----PVYQRVYPQFHPLLGLQYYT---------CGKLEWFLGDTENA 290 (335)
Q Consensus 224 ~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l----~~~~~~~p~~hp~~~~~l~~---------La~l~~~~g~~~eA 290 (335)
...++-.++++-+.-+...+|.+.|++|++++- ++.+. +-.+-|.+-....+ -|.-.-..|+.+.|
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm-L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM-LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH-HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 345566777778877778889999999998753 22221 11121221111111 13333346888889
Q ss_pred HHHHHHHHHhhh
Q 019809 291 IKSMTEAVEILR 302 (335)
Q Consensus 291 ~~~l~~A~~il~ 302 (335)
+.+|..|.+.+.
T Consensus 932 l~~Y~~A~D~fs 943 (1416)
T KOG3617|consen 932 LSFYSSAKDYFS 943 (1416)
T ss_pred HHHHHHhhhhhh
Confidence 988888877655
No 311
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=57.83 E-value=8.1 Score=26.06 Aligned_cols=28 Identities=25% Similarity=0.652 Sum_probs=15.5
Q ss_pred CccCCCCCCcceecCCCCCc--cccCcCCC
Q 019809 146 YRCKDDGCSGFLLRDSDDKG--FTCQQCGL 173 (335)
Q Consensus 146 ~~C~~~~C~g~~~~~~~~~~--~~C~~C~~ 173 (335)
..|+.++|++++...+.... ..|..|+.
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~ 48 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGT 48 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCS
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCC
Confidence 37888889887776655444 77887775
No 312
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.50 E-value=1.6e+02 Score=27.57 Aligned_cols=76 Identities=14% Similarity=0.005 Sum_probs=52.5
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF---HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~---hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
.-.++..+..|+.+|-+-++|..|.... .....--|.. --.....+.++|++|...++..+|+.+.-+|-=.+
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L----~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~ 174 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVL----VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ 174 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH----hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 3456778899999999999999986542 2222222211 12234577899999999999999999888875444
Q ss_pred hhh
Q 019809 302 RIT 304 (335)
Q Consensus 302 ~~~ 304 (335)
..+
T Consensus 175 a~~ 177 (399)
T KOG1497|consen 175 AES 177 (399)
T ss_pred hcc
Confidence 444
No 313
>PF04071 zf-like: Cysteine-rich small domain; InterPro: IPR007212 This is a probable metal-binding domain. It is found in a probable precorrin-3B C17-methyltransferase from Methanobacterium thermoautotrophicum, that catalyses the methylation of C-17 in precorrin-3B to form precorrin-4.
Probab=57.21 E-value=43 Score=24.70 Aligned_cols=41 Identities=22% Similarity=0.556 Sum_probs=28.6
Q ss_pred CCc-ceecCCCCCccccCcCCCCCcHHHHHHHHHHHHHHHHH
Q 019809 153 CSG-FLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKK 193 (335)
Q Consensus 153 C~g-~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~ 193 (335)
|+| ++...++...|.|..|...-..+.+..+++.+....+.
T Consensus 38 ~~G~~~~~~~G~~vw~C~~C~~~H~~e~~~~i~~~~~~~~~~ 79 (86)
T PF04071_consen 38 CGGNFIYTKNGSKVWDCSDCTLPHRPENYDYIIRKLKEIIEE 79 (86)
T ss_pred CCccEEEcCCCCeeeECccCCCccCHHHHHHHHHHHHHHHHH
Confidence 444 34444445689999999998888888877766655543
No 314
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=56.46 E-value=23 Score=26.88 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEeccccCCCCeEEEeecCCC
Q 019809 82 LAVVRAVQHVPKGAEVLISYIETA 105 (335)
Q Consensus 82 ~~~~~a~~~i~~g~el~~~Y~~~~ 105 (335)
.+++.-.+.|+.|++++++|.++.
T Consensus 76 tVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 76 TITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EEEEEecccccCCCEEEEEeeCCC
Confidence 678888899999999999998764
No 315
>PRK11906 transcriptional regulator; Provisional
Probab=56.39 E-value=1.1e+02 Score=29.85 Aligned_cols=79 Identities=13% Similarity=-0.010 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHHHHhc---------hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHH
Q 019809 225 SVNLMQTREKLIKILMEL---------EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 295 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~---------~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 295 (335)
++..+.++-.++.++... .+..+|.++.+++++ .++..| ..++.+|.+.+..++++.|...++
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve-----ld~~Da---~a~~~~g~~~~~~~~~~~a~~~f~ 362 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD-----ITTVDG---KILAIMGLITGLSGQAKVSHILFE 362 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh-----cCCCCH---HHHHHHHHHHHhhcchhhHHHHHH
Confidence 444455555555554321 233455555555554 334444 668889999999999999999999
Q ss_pred HHHHhhhhhcCCCChhHHHHH
Q 019809 296 EAVEILRITHGTNSPFMKELI 316 (335)
Q Consensus 296 ~A~~il~~~~G~~hp~~~~l~ 316 (335)
+|.. +.|+.+...-..
T Consensus 363 rA~~-----L~Pn~A~~~~~~ 378 (458)
T PRK11906 363 QAKI-----HSTDIASLYYYR 378 (458)
T ss_pred HHhh-----cCCccHHHHHHH
Confidence 9975 566666554433
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.23 E-value=1.8e+02 Score=29.57 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 226 VNLMQTREKLIKILM-ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 226 ~~l~~~~~~L~~~~~-~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
..=+.++..++.++. +..+++.|..+..+.+...++ +...-..-..-+-|+.++...+... |..++.++++..+.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 344677788998887 678999999999999888877 4333333333344577777776666 88888888877766
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.56 E-value=2.8e+02 Score=29.49 Aligned_cols=89 Identities=20% Similarity=0.137 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
|-..+.++..+...+.+ ++.+..-....+++....-|..|-..+. ++.||+++...|++++|...+.+....+...
T Consensus 576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~-~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLA-LSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 44566777777777766 3444444444455444444444444443 3799999999999999999999888887766
Q ss_pred cCCCChhHHHHHHHH
Q 019809 305 HGTNSPFMKELILKL 319 (335)
Q Consensus 305 ~G~~hp~~~~l~~~l 319 (335)
. .|+++.-...++
T Consensus 652 ~--~~~~~~a~~~~v 664 (894)
T COG2909 652 Q--YHVDYLAAAYKV 664 (894)
T ss_pred C--CCchHHHHHHHh
Confidence 4 576665544443
No 318
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=55.56 E-value=20 Score=31.93 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 248 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 248 Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
|..||.+++.+. |..|..++.||.++...|+.-+|+-+|.+|+.
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 566777766543 77789999999999999999999999998874
No 319
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.03 E-value=63 Score=30.83 Aligned_cols=90 Identities=14% Similarity=0.034 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 019809 201 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 277 (335)
Q Consensus 201 g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~---~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~L 277 (335)
.+|+..+++.+.+..+-..- -+....++...+.++.+ .|+.++|+..+..++..- +...|.+ +--+
T Consensus 155 qdydamI~Lve~l~~~p~~~----~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~----~~~~~d~---~gL~ 223 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCD----VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD----ENPDPDT---LGLL 223 (374)
T ss_pred hhHHHHHHHHHHhhccCccc----hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc----CCCChHH---HHHH
Confidence 35555555555443321111 11223446667777777 899999999887764332 2344443 2233
Q ss_pred hHHHHh---------cCChHHHHHHHHHHHHhh
Q 019809 278 GKLEWF---------LGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 278 a~l~~~---------~g~~~eA~~~l~~A~~il 301 (335)
|.+|-. ...+++|+.+|.+|.++-
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 444422 234678888888876654
No 320
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.51 E-value=1.3e+02 Score=28.54 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=32.5
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 254 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~ 254 (335)
..-|+|++|...|..+..... .| ...--+|+-.+..+|.|.+|.....+
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~~---~~-----~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKDD---AP-----AELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred HhhccHHHHHHHHHHHhccCC---CC-----cccchhHHHHHHHHHHHHHHHHHHhh
Confidence 456899999999987754211 11 22234577777888999888775544
No 321
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.17 E-value=1.9e+02 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=25.0
Q ss_pred HHhhhhcCChHHHHHHHHHHHHH----hhcccCCCChhHHHHHHHHHHHHHhchhH
Q 019809 194 TLALTSCGNHQEVVSTYKMIEKL----QKKLYHPFSVNLMQTREKLIKILMELEDW 245 (335)
Q Consensus 194 a~~~~~~g~~~ea~~l~~~~l~l----~~~~l~~~h~~l~~~~~~L~~~~~~~~~~ 245 (335)
|.+.....++++|+..|++++.. .++.+.+. -.+...|++.|...|++
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEq----E~tvlel~~lyv~~g~~ 61 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQ----EATVLELFKLYVSKGDY 61 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHH----HHHHHHHHHHHHhcCCc
Confidence 33444455777787777777654 11111111 12334566777666654
No 322
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=52.62 E-value=8.3 Score=24.21 Aligned_cols=29 Identities=28% Similarity=0.789 Sum_probs=16.1
Q ss_pred ccCCCCCCcc-eecCCCCCccccCcCCCCCcH
Q 019809 147 RCKDDGCSGF-LLRDSDDKGFTCQQCGLVRSK 177 (335)
Q Consensus 147 ~C~~~~C~g~-~~~~~~~~~~~C~~C~~~~~~ 177 (335)
.|+ .|++. ++.+.....+.|..||...+.
T Consensus 2 ~Cp--~Cg~~~~~~D~~~g~~vC~~CG~Vl~e 31 (43)
T PF08271_consen 2 KCP--NCGSKEIVFDPERGELVCPNCGLVLEE 31 (43)
T ss_dssp SBT--TTSSSEEEEETTTTEEEETTT-BBEE-
T ss_pred CCc--CCcCCceEEcCCCCeEECCCCCCEeec
Confidence 464 35432 344445566788889876653
No 323
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.43 E-value=2.3e+02 Score=27.47 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=54.0
Q ss_pred ccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHhHHHHhcCChHHHHHHHHHH
Q 019809 220 LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH--PLLGLQYYTCGKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 220 ~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~h--p~~~~~l~~La~l~~~~g~~~eA~~~l~~A 297 (335)
.+..+..-.....+.|.+.|...+.|+.|..+ +....||..+ -.-|..+|-+|++-..+++|..|.+++.+|
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~l------vsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa 273 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKL------VSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQA 273 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHH------hhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHH
Confidence 34444444444556677788888888888665 3445677443 356778889999999999999999999888
Q ss_pred HH
Q 019809 298 VE 299 (335)
Q Consensus 298 ~~ 299 (335)
+.
T Consensus 274 ~r 275 (493)
T KOG2581|consen 274 LR 275 (493)
T ss_pred HH
Confidence 65
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=52.30 E-value=1.8e+02 Score=26.65 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 264 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p 264 (335)
+..+.+.+..+...|+++.+++.++++.. .+|.+-. ++..++..|...|+...|+..|+++-.....-.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~-----~dp~~E~---~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE-----LDPYDEP---AYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh-----cCccchH---HHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 34445566667777888888877776654 4555544 4667899999999999999999988776555555
No 325
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=52.29 E-value=67 Score=28.71 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHH
Q 019809 204 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVY 259 (335)
Q Consensus 204 ~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~-~~~~~~Al~~~~~~l~~~ 259 (335)
+.|...|+.+..+...-++|.||..+.+..+.+..|.+ +++-++|..+.+.+.+-.
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46777888888876667999999888877776665554 588889998888776633
No 326
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.86 E-value=83 Score=22.23 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhc
Q 019809 185 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 219 (335)
Q Consensus 185 ~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~ 219 (335)
.....+...|......|++++|+.+|..+......
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34455667777777889999999999998776544
No 327
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=51.28 E-value=6.7 Score=27.44 Aligned_cols=58 Identities=28% Similarity=0.523 Sum_probs=28.7
Q ss_pred CccCCCCCCcceecCCCCCccccCcCCCCCcHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCC
Q 019809 146 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF 224 (335)
Q Consensus 146 ~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~ 224 (335)
|+| .|+..+..+.+...-+| .||...+..++.- +....++++|.++.+ +++...++..
T Consensus 4 frC---~Cgr~lya~e~~kTkkC-~CG~~l~vk~~rI--------------l~~~~~~~eA~eiVr---klQ~e~~G~~ 61 (68)
T PF09082_consen 4 FRC---DCGRYLYAKEGAKTKKC-VCGKTLKVKERRI--------------LARAENAEEASEIVR---KLQEEKYGGT 61 (68)
T ss_dssp EEE---TTS--EEEETT-SEEEE-TTTEEEE--SSS---------------BS--SSHHHHHHHHH---HHSS---S-T
T ss_pred EEe---cCCCEEEecCCcceeEe-cCCCeeeeeeEEE--------------EEecCCHHHHHHHHH---HHHHHhcccc
Confidence 566 38777777777777889 9998776543211 223346667766543 3444555443
No 328
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=50.95 E-value=1.1e+02 Score=28.77 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCC----hhHHHHHHHHHHHHHHhccc
Q 019809 269 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS----PFMKELILKLEEAQAEASYK 329 (335)
Q Consensus 269 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~h----p~~~~l~~~l~~~~~el~~~ 329 (335)
..+.+++.+|......+++.+|+.+|+.|...++...-... ..++.+...+.......+.+
T Consensus 251 ~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~a~kd 315 (346)
T cd09247 251 HEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPGSDISSPVIFRDERAEVATLLQKYEKE 315 (346)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777788888889999999999999997665533222 23333444444444444333
No 329
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=50.79 E-value=2.3e+02 Score=27.11 Aligned_cols=104 Identities=15% Similarity=0.004 Sum_probs=65.9
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 272 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~ 272 (335)
++......|+|..|+.+..+.-+ |...+.+ .+...+.+....||++.|-.|..++-+ ++..+.+.
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae------~~e~p~l--~~l~aA~AA~qrgd~~~an~yL~eaae------~~~~~~l~- 154 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAE------HGEQPVL--AYLLAAEAAQQRGDEDRANRYLAEAAE------LAGDDTLA- 154 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhh------cCcchHH--HHHHHHHHHHhcccHHHHHHHHHHHhc------cCCCchHH-
Confidence 34444567899888877655322 1112222 233455677788999999888776544 23344443
Q ss_pred HHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHH
Q 019809 273 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 316 (335)
Q Consensus 273 ~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~ 316 (335)
.....+.++..+|+++.|+..+.++.+ .+|.||.+..+.
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~-----~~pr~~~vlrLa 193 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLE-----MTPRHPEVLRLA 193 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHH-----hCcCChHHHHHH
Confidence 345678888999999999988877765 366776555443
No 330
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=50.67 E-value=70 Score=32.84 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=30.2
Q ss_pred HhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHH
Q 019809 240 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 294 (335)
Q Consensus 240 ~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l 294 (335)
..++..++|+++++..+. .||.+|.. ++.+|+++...++.+.|+..|
T Consensus 662 r~ld~~eeA~rllEe~lk----~fp~f~Kl----~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALK----SFPDFHKL----WLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred HHhhhHHHHHHHHHHHHH----hCCchHHH----HHHHhHHHHHHHHHHHHHHHH
Confidence 445677888888877664 45666543 456677776666666665544
No 331
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.26 E-value=2.3e+02 Score=26.77 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=57.2
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCCChhH-HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 019809 197 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 275 (335)
Q Consensus 197 ~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l-~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~ 275 (335)
++...+|..|+..|...++.. .+ ++.+ +..+.+=+.+...+|+|..|+.-|.+++. ..|...-.++
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~k---c~--D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--------~~P~h~Ka~~ 157 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKK---CA--DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--------LKPTHLKAYI 157 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhc---CC--CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--------cCcchhhhhh
Confidence 334446677777776655432 11 3333 34456666677778999999998888775 2344456678
Q ss_pred HHhHHHHhcCChHHHHHHHHH
Q 019809 276 TCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 276 ~La~l~~~~g~~~eA~~~l~~ 296 (335)
+-|+.+..+.++.+|..+.++
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhh
Confidence 888888888888888777554
No 332
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=49.87 E-value=1.3e+02 Score=31.92 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHHHHHhchhHHHHHHHHHHHH
Q 019809 235 LIKILMELEDWKEALAYCQLTI 256 (335)
Q Consensus 235 L~~~~~~~~~~~~Al~~~~~~l 256 (335)
+-.+|.+++++++|+.++++++
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 4444555555555555555443
No 333
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.82 E-value=1.4e+02 Score=31.19 Aligned_cols=34 Identities=18% Similarity=-0.046 Sum_probs=18.7
Q ss_pred HhcCCCChHHHH-HHHHHhHHHHhcCChHHHHHHH
Q 019809 261 RVYPQFHPLLGL-QYYTCGKLEWFLGDTENAIKSM 294 (335)
Q Consensus 261 ~~~p~~hp~~~~-~l~~La~l~~~~g~~~eA~~~l 294 (335)
++.+..||.... ....+|+-+-..|++.+|+..|
T Consensus 871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 344555665432 4455666666666666665543
No 334
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.52 E-value=1.5e+02 Score=24.60 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 256 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l 256 (335)
.+++.++.....++.+++..++..+ +++.|.++.+ ...-+..++..|+|.+|+.+.+.+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~AL-----rvLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDAL-----RVLRPEFPEL---DLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHH-----HHhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3444444444556777777776554 3466666543 2334556788999999999888753
No 335
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=49.46 E-value=34 Score=35.20 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=35.6
Q ss_pred hchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 241 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 241 ~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..++|.+|.++.+..+.+. |..--.+|.+|-+++.+++...|.+.|..++.
T Consensus 497 ~~~~fs~~~~hle~sl~~n--------plq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN--------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cchhHHHHHHHHHHHhhcC--------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 3456666666666555433 33334578889999999999999999887754
No 336
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=49.37 E-value=1.8e+02 Score=26.58 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCC
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 308 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~ 308 (335)
..++..++..+...++++.+.+..++++. -||..=-.+..|=..|...|+...|+..|++....+...+|.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 44566677777777888887777666554 3444444556666778889999999999999999999999988
Q ss_pred Ch
Q 019809 309 SP 310 (335)
Q Consensus 309 hp 310 (335)
-+
T Consensus 225 P~ 226 (280)
T COG3629 225 PA 226 (280)
T ss_pred cc
Confidence 55
No 337
>PRK11519 tyrosine kinase; Provisional
Probab=48.55 E-value=1.6e+02 Score=30.84 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=23.2
Q ss_pred HHHHhhhhhcCCCChhHHHHHHHHHHHHHHhc
Q 019809 296 EAVEILRITHGTNSPFMKELILKLEEAQAEAS 327 (335)
Q Consensus 296 ~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~ 327 (335)
.-..-+...||++||.++.+...+..++.++.
T Consensus 325 ~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~ 356 (719)
T PRK11519 325 FKEAEISKLYTKEHPAYRTLLEKRKALEDEKA 356 (719)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 33444566799999999988877776665544
No 338
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=48.49 E-value=91 Score=28.56 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhc---CChHHHHHHHHHHHH
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL---GDTENAIKSMTEAVE 299 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~---g~~~eA~~~l~~A~~ 299 (335)
.+-...|+.+|+.+|++..|+.-|++++.+ -++.|.+. .-+|.++..+ ....++..++++|+.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~---~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPEIL---LGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 344667999999999999999998887753 34667663 3345555443 245677777877765
No 339
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.36 E-value=2.6e+02 Score=26.89 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=47.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 271 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~ 271 (335)
+.|.-......|.+|+..+.+++. +.|.|. .+++.=++++..+++|+.|...+++++. +.|.+ ....
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe-----~~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k----~~P~N-ka~~ 328 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLE-----LDPNNV---KALYRRGQALLALGEYDLARDDFQKALK----LEPSN-KAAR 328 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh-----cCCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHH----hCCCc-HHHH
Confidence 344444455567777776666665 355564 3456667889999999999999998775 45666 3333
Q ss_pred HHHHHH
Q 019809 272 LQYYTC 277 (335)
Q Consensus 272 ~~l~~L 277 (335)
..+..|
T Consensus 329 ~el~~l 334 (397)
T KOG0543|consen 329 AELIKL 334 (397)
T ss_pred HHHHHH
Confidence 334433
No 340
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=47.95 E-value=10 Score=23.47 Aligned_cols=28 Identities=32% Similarity=0.825 Sum_probs=13.8
Q ss_pred CccCCCCCCcceec----CCCCCccccCcCCCCC
Q 019809 146 YRCKDDGCSGFLLR----DSDDKGFTCQQCGLVR 175 (335)
Q Consensus 146 ~~C~~~~C~g~~~~----~~~~~~~~C~~C~~~~ 175 (335)
.+|. .|++++-| +.+...|.|.-|+...
T Consensus 3 ~rC~--~C~aylNp~~~~~~~~~~w~C~~C~~~N 34 (40)
T PF04810_consen 3 VRCR--RCRAYLNPFCQFDDGGKTWICNFCGTKN 34 (40)
T ss_dssp -B-T--TT--BS-TTSEEETTTTEEEETTT--EE
T ss_pred cccC--CCCCEECCcceEcCCCCEEECcCCCCcC
Confidence 3554 46665543 3356789999999754
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=47.78 E-value=1.2e+02 Score=27.91 Aligned_cols=73 Identities=25% Similarity=0.342 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH-hhhh
Q 019809 227 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE-ILRI 303 (335)
Q Consensus 227 ~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~-il~~ 303 (335)
.++.+....+.+....|.++.|..+..++.. ..+..+.......+.-+++.|..|+..+|...+++.+. .+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~----~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQ----LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc----cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 4456667778888888999988777665433 22222222334456678999999999999999988877 4443
No 342
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=47.61 E-value=1e+02 Score=31.41 Aligned_cols=65 Identities=28% Similarity=0.257 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 227 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 227 ~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.++.+.+-+++.+-..|+++.|..|...+++ ..|.+--.+..=|+++...|.+++|..++.+|.+
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 4567788899999999999999999887774 4455555555668888888998888888776643
No 343
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.25 E-value=71 Score=27.20 Aligned_cols=57 Identities=12% Similarity=-0.050 Sum_probs=41.5
Q ss_pred hhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 019809 217 QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 275 (335)
Q Consensus 217 ~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~ 275 (335)
.+.+-.+.|+....++..|+-+-.+.|++.+|..++.++.+ ...-|.+-..++..+.
T Consensus 155 vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~ml 211 (221)
T COG4649 155 VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQIML 211 (221)
T ss_pred hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHHHH
Confidence 34556778888888999999999999999999999887765 3334444444444443
No 344
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.10 E-value=1.5e+02 Score=23.70 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=50.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChH-------HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 234 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 234 ~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~-------~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
.++......+++-.++-+|++++.+.+..--...-. ......|||..+..+|+.+=.++|++-|-+-.
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 456666777888888888898888887773222111 12467899999999999999999999875543
No 345
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=46.74 E-value=31 Score=32.39 Aligned_cols=99 Identities=11% Similarity=0.068 Sum_probs=63.1
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHhhcc-----------cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 019809 193 KTLALTSCGNHQEVVSTYKMIEKLQKKL-----------YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 261 (335)
Q Consensus 193 ~a~~~~~~g~~~ea~~l~~~~l~l~~~~-----------l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~ 261 (335)
........++++.|...|.+.++..... ..+....-...+.+++..-..++.+..|...+..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~---- 303 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR---- 303 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc----
Confidence 3334556678888888888776643210 1111222233444566666667777777666555444
Q ss_pred hcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 262 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 262 ~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
..+...-.+|+.+..+..+.++++|+..++.|..
T Consensus 304 ----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 304 ----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred ----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 4445555778888888888899999988888865
No 346
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.74 E-value=46 Score=32.00 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=42.4
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh--hcCC------CChhHH---HHHHHHHHHHHHhccc
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGT------NSPFMK---ELILKLEEAQAEASYK 329 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~--~~G~------~hp~~~---~l~~~l~~~~~el~~~ 329 (335)
|+...++|.-+-++++.++|+.+|++++..+.. .-|. ..|.+. .++++|++.+.+++++
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~R 91 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHR 91 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788889999999999999998876 1121 245555 4777788877777765
No 347
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=46.58 E-value=15 Score=21.33 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=14.1
Q ss_pred CCCcceecCCCCCccccCcCCCC
Q 019809 152 GCSGFLLRDSDDKGFTCQQCGLV 174 (335)
Q Consensus 152 ~C~g~~~~~~~~~~~~C~~C~~~ 174 (335)
.|++...+......-.|+.||..
T Consensus 8 ~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 8 RCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TT--BEEE-SSSS-EEESSSS-E
T ss_pred cCCccccCCCCcCEeECCCCcCE
Confidence 57888887777777789999864
No 348
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.31 E-value=46 Score=32.21 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH---------HhCC---CCCCHHHHHHHHHHHhc--cccccccCC---CCceeeEeccccc
Q 019809 2 SDIDEKQLLLYAQIANLVNL---------ILQW---PEISINEIAENFSKLAC--NAHTICNSE---LRPLGTGLYPVIS 64 (335)
Q Consensus 2 ~~~~~~~~~~~~~~a~~~~~---------~l~~---~~~~~~~~~~~~~~~~~--N~~~~~~~~---~~~~g~~~~~~~s 64 (335)
+|++-+..++...|+++.-- -|+. ..++.+-+..++..+.- -++.+.+.+ -.++=...--.+|
T Consensus 127 ~~v~~e~~e~l~~~s~l~G~~~~~~~vd~~l~~~~~~~P~~elv~~VL~amWky~qtY~la~~~~~ek~svWYvMDefGs 206 (631)
T KOG2155|consen 127 TSVEKEEAEHLKKISSLTGNLPRHESVDARLSSYSVDDPKNELVEKVLKAMWKYSQTYSLAYQGEIEKKSVWYVMDEFGS 206 (631)
T ss_pred ccchhhHHHHHHHHHHhhCCCCcccchhhccCcccccCcchHHHHHHHHHHHHhhheeecccCccccccceeEEHhhhhh
Confidence 35666777788888776441 1211 12332223333333322 224454432 1233344445689
Q ss_pred ccccCCccCcEEE---EeCCE---EEEEeccccCCCCeEEEeecCCCCCHHHHHHHHh
Q 019809 65 IINHSCLPNAVLV---FEGRL---AVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK 116 (335)
Q Consensus 65 ~~nHsC~pn~~~~---~~~~~---~~~~a~~~i~~g~el~~~Y~~~~~~~~~R~~~L~ 116 (335)
.+.||=.||..+. |-... -.+..++++..|||+|-.+.........|.-.|.
T Consensus 207 rvrHsdePnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg~~~p~~Rk~~l~ 264 (631)
T KOG2155|consen 207 RVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASGVIHPEWRKYILQ 264 (631)
T ss_pred hhccCCCCcceeeeheecchhcceeEEeeccCCCCchHHHHHHhhcCCCHHHHHHHhc
Confidence 9999999999763 33332 3577899999999999998776666777777665
No 349
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=45.15 E-value=14 Score=24.80 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=11.0
Q ss_pred EEEeccccCCCCeEE
Q 019809 84 VVRAVQHVPKGAEVL 98 (335)
Q Consensus 84 ~~~a~~~i~~g~el~ 98 (335)
++.|.++|++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 467999999999984
No 350
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=44.57 E-value=3.1e+02 Score=26.77 Aligned_cols=130 Identities=14% Similarity=0.088 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcc------cCCCChhHHH----HHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 188 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL------YHPFSVNLMQ----TREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~------l~~~h~~l~~----~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+.-...|+....+++|..|..-|+.++++.++. +.+..-++.. +-..|.-+|.++++-+-|+.+..+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 334455666667777777776677766665432 2233333332 335577888999999999988777664
Q ss_pred HHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 258 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 258 ~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
.. =.|+.+|--. |-....+.+|.+|-+-.--|.-.+-..-|.++...+-+..-++.+..|
T Consensus 257 ln-P~~frnHLrq-------AavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqamiEe 316 (569)
T PF15015_consen 257 LN-PSYFRNHLRQ-------AAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMIEE 316 (569)
T ss_pred cC-cchhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHHHH
Confidence 22 1122233222 334445677888877766666666666556655555555445555444
No 351
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.47 E-value=2.4e+02 Score=25.35 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChH-HHHHHHHHHHHhhhhhcC-CCChhH
Q 019809 235 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTE-NAIKSMTEAVEILRITHG-TNSPFM 312 (335)
Q Consensus 235 L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~-eA~~~l~~A~~il~~~~G-~~hp~~ 312 (335)
-+..+.+.+++.-|.+++..+++++++---+.. --..-+|+.+......-+ +-.+++.+|+..-+.... ..||..
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 344566778888888988888888887322222 223456666666554333 566678888888722211 226655
Q ss_pred HHHH
Q 019809 313 KELI 316 (335)
Q Consensus 313 ~~l~ 316 (335)
+.+.
T Consensus 93 H~~~ 96 (260)
T PF04190_consen 93 HHLL 96 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=44.42 E-value=1.9e+02 Score=24.60 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhch----hHHHHHHHHHHHHHHHHH
Q 019809 203 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE----DWKEALAYCQLTIPVYQR 261 (335)
Q Consensus 203 ~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~----~~~~Al~~~~~~l~~~~~ 261 (335)
+++|++.++.++.+ +|...+++..++.+|...+ +..+|.+++.++.+.+++
T Consensus 51 iedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 51 IEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 45556666666553 3444566777777776654 344666666666665554
No 353
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=44.20 E-value=1.7e+02 Score=26.66 Aligned_cols=56 Identities=21% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHH-HHHHHHHHHHHHhcc
Q 019809 272 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK-ELILKLEEAQAEASY 328 (335)
Q Consensus 272 ~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~-~l~~~l~~~~~el~~ 328 (335)
.....-|.++...|..++|.+|++.....++ ..+..+++.. .+...|++...-++.
T Consensus 199 ~~Kl~yA~~Lae~G~~~~A~kY~d~i~~~lk-~~~~~~~~~~~~l~~~l~~l~~~~~~ 255 (284)
T PF12931_consen 199 PYKLQYASLLAEQGLLSEALKYCDAIASSLK-SLPKNSPYHHQNLAQQLQELSSRLSE 255 (284)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-TS-TTSHHHH-HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-hCCccChhhHHHHHHHHHHHHHHhcc
Confidence 3344567788889999999999988888887 4577777776 788888887665553
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.97 E-value=43 Score=32.78 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHH--hcC-CCChHHHHHHHHHhHHH-------------HhcCChHHHHHHH
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQR--VYP-QFHPLLGLQYYTCGKLE-------------WFLGDTENAIKSM 294 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~--~~p-~~hp~~~~~l~~La~l~-------------~~~g~~~eA~~~l 294 (335)
....|+...+.+|+++-|.+.++++-+.-.- +|- ..... .+.+|+.+. +.+|+.++.++.|
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~---~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDRE---KLSKLAKIAEERGDINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HH---HHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHH---HHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHH
Confidence 4667999999999999998888776443221 111 11121 223333332 3457777777777
Q ss_pred HHH-----HHhhhhhcCC
Q 019809 295 TEA-----VEILRITHGT 307 (335)
Q Consensus 295 ~~A-----~~il~~~~G~ 307 (335)
.++ ..++-++|||
T Consensus 426 ~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 426 IETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHTT-HHHHHHHHHHTT-
T ss_pred HHcCCchHHHHHHHhcCC
Confidence 776 5566666665
No 355
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=42.42 E-value=2.2e+02 Score=29.28 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=36.9
Q ss_pred HHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 258 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 258 ~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
+.+.-.+.+.-.+|..+..||+-|...|.++.|++.|++|+.-..
T Consensus 235 iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~ 279 (835)
T KOG2047|consen 235 IIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM 279 (835)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence 334445566778899999999999999999999999999987544
No 356
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=42.22 E-value=2.2e+02 Score=26.29 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcccccC
Q 019809 253 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSS 332 (335)
Q Consensus 253 ~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~~~~~ 332 (335)
..-|.-|+.-+|-..|.-+. -..++.+ ++++.-+-.++.-++-++...||+.|.+.-++..++.++.+|..+.++
T Consensus 199 s~~L~~yr~kngvfdp~~qa-evq~~Lv----s~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~ 273 (372)
T COG3524 199 SNDLTDYRIKNGVFDPKAQA-EVQMSLV----SKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQA 273 (372)
T ss_pred HhHHHHHHhhcCccChhhhh-HHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 44455677778888886542 1111111 233333344555567777788999999999999988888877665443
No 357
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.07 E-value=1.1e+02 Score=28.98 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHH
Q 019809 184 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWK 246 (335)
Q Consensus 184 ~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~ 246 (335)
...+..++....+.+..++++.|...|..+..+...++|..|.....+...-+.++....+++
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e 100 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEE 100 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677778889999999999999999889999998888877776666665554443
No 358
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=41.54 E-value=9.7 Score=22.90 Aligned_cols=26 Identities=23% Similarity=0.615 Sum_probs=16.6
Q ss_pred CCCcceecCCCCCcc-ccCcCCCCCcH
Q 019809 152 GCSGFLLRDSDDKGF-TCQQCGLVRSK 177 (335)
Q Consensus 152 ~C~g~~~~~~~~~~~-~C~~C~~~~~~ 177 (335)
.|++.+.|..+.... .|..|+...+.
T Consensus 6 ~C~nlL~p~~~~~~~~~C~~C~Y~~~~ 32 (35)
T PF02150_consen 6 ECGNLLYPKEDKEKRVACRTCGYEEPI 32 (35)
T ss_dssp TTTSBEEEEEETTTTEEESSSS-EEE-
T ss_pred CCCccceEcCCCccCcCCCCCCCccCC
Confidence 588888887653322 59999986543
No 359
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.03 E-value=1.3e+02 Score=21.47 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhccc
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 221 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l 221 (335)
...+...|...-..|++++|+..|...+......+
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788999999999999888655433
No 360
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=40.98 E-value=1.2e+02 Score=31.61 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHH------HHhcCChHHHHHHHHH------HHHhhhhhcCCCCh
Q 019809 243 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL------EWFLGDTENAIKSMTE------AVEILRITHGTNSP 310 (335)
Q Consensus 243 ~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l------~~~~g~~~eA~~~l~~------A~~il~~~~G~~hp 310 (335)
.+|++|+.....+-+ +++-.++.|.++.+|.++|.. +...+.+.+|+.+|.+ |..+-+..+||+..
T Consensus 746 kew~kai~ildniqd--qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t 823 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQD--QKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEAT 823 (1636)
T ss_pred hhhhhhHhHHHHhhh--hccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhH
Confidence 345555443332221 234456778888888777643 4456778888888764 67888889999976
Q ss_pred hHHHHHHHHHHHH
Q 019809 311 FMKELILKLEEAQ 323 (335)
Q Consensus 311 ~~~~l~~~l~~~~ 323 (335)
....+ .+.+++.
T Consensus 824 ~~~yi-akaedld 835 (1636)
T KOG3616|consen 824 ISLYI-AKAEDLD 835 (1636)
T ss_pred HHHHH-HhHHhHH
Confidence 55543 3334443
No 361
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=40.36 E-value=20 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.803 Sum_probs=16.6
Q ss_pred CCCcceecCCCC--CccccCcCCCCCc
Q 019809 152 GCSGFLLRDSDD--KGFTCQQCGLVRS 176 (335)
Q Consensus 152 ~C~g~~~~~~~~--~~~~C~~C~~~~~ 176 (335)
.|++.+.+.... ..+.|..||....
T Consensus 5 ~Cg~~l~~~~~~~~~~~vC~~Cg~~~~ 31 (52)
T smart00661 5 KCGNMLIPKEGKEKRRFVCRKCGYEEP 31 (52)
T ss_pred CCCCccccccCCCCCEEECCcCCCeEE
Confidence 577766665432 3688999997543
No 362
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=40.25 E-value=1.3e+02 Score=21.31 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhccc-CCCChhH
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY-HPFSVNL 228 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l-~~~h~~l 228 (335)
++..++..|......|++++|..+|...+......+ ...++..
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~ 48 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQR 48 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 445566677777788999999999999887655433 2334443
No 363
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=39.67 E-value=4.7e+02 Score=27.43 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHH------------------HHHHHHhcCCCChHHH
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLT------------------IPVYQRVYPQFHPLLG 271 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~------------------l~~~~~~~p~~hp~~~ 271 (335)
+..+-.+-.+++..+.++..|++|.+|+... ++..-+.+|.+||.+-
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp 856 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLP 856 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHH
Confidence 3444556677888888889999999887652 2333456788887653
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.40 E-value=35 Score=32.39 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCC
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 307 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~ 307 (335)
||...-.+..++.++..+|+.+.|-+++++|+-+++..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~ 76 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP 76 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333557888999999999999999999999999866443
No 365
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=38.59 E-value=1.5e+02 Score=28.09 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
+-..+.+++..|..+...+++.+|+..|+.|.+.++.
T Consensus 244 ~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~ 280 (353)
T cd09243 244 VFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNK 280 (353)
T ss_pred HHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 4455777788888888888999999999988877754
No 366
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=38.32 E-value=15 Score=29.79 Aligned_cols=26 Identities=19% Similarity=0.760 Sum_probs=10.9
Q ss_pred cCCCCCCcceecCCCCCccccCcCCCC
Q 019809 148 CKDDGCSGFLLRDSDDKGFTCQQCGLV 174 (335)
Q Consensus 148 C~~~~C~g~~~~~~~~~~~~C~~C~~~ 174 (335)
|++..|...+.+. ++..|.|.+|+..
T Consensus 21 C~~~~C~kKv~~~-~~~~y~C~~C~~~ 46 (146)
T PF08646_consen 21 CPNEKCNKKVTEN-GDGSYRCEKCNKT 46 (146)
T ss_dssp -TSTTTS-B-EEE-TTTEEEETTTTEE
T ss_pred CCCccCCCEeecC-CCcEEECCCCCCc
Confidence 4433454444333 2234666666654
No 367
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.23 E-value=1.5e+02 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhc
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 219 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~ 219 (335)
+...+...|..--..|++++|..+|..+++....
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3445556666666778999999999999886543
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=38.11 E-value=1.9e+02 Score=25.00 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHH
Q 019809 225 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 290 (335)
Q Consensus 225 h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA 290 (335)
......+...||..|. ..|-++|+.++.++++.+..-- ..+| -.+..||.++..+++++.|
T Consensus 137 ~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-~~n~---eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 137 ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-NFNP---EILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-CCCH---HHHHHHHHHHHHhcchhhh
Confidence 3344666777776666 5688899999888887654110 2344 4467889999999998887
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.81 E-value=2.3e+02 Score=27.43 Aligned_cols=61 Identities=13% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 192 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 192 ~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+.++-+...|++..|+..|.++..-.+. -..++++.-+++.+....|+|..-..|..++..
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3444456788999999888886554432 345677888899999999999877777655544
No 370
>COG2158 Uncharacterized protein containing a Zn-finger-like domain [General function prediction only]
Probab=37.78 E-value=58 Score=24.89 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=25.9
Q ss_pred ceecCCCCCccccCcCCCCCcHHHHHHHHHHHHHHH
Q 019809 156 FLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILS 191 (335)
Q Consensus 156 ~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~ 191 (335)
++...++...|.|..|--....+.+..+++++....
T Consensus 53 wi~~~~G~~VwSC~dC~~iH~ke~~~~ilr~ll~~~ 88 (112)
T COG2158 53 WISDSNGRKVWSCSDCHWIHRKEGAEEILRELLEVG 88 (112)
T ss_pred eeEcCCCCEEeeccccceecccchHHHHHHHHHHHc
Confidence 455555667899999998888877777776655443
No 371
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=37.46 E-value=3.7e+02 Score=30.45 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
.+..|..+|...+.+++|.++++..+.-+ + ..+ -.+...|..++.+.+-++|..++.+|+.-+-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF----~-q~~---~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF----G-QTR---KVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh----c-chh---hHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 34456777777778888877777655433 3 222 23455566777778888899999999876554
No 372
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=37.29 E-value=1.1e+02 Score=28.46 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 235 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 235 L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
.+.-....|+.++|..+.+.++. +.+.||.. +.++|...-.-.+.-+|-.+|.+|+.|
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAla-----laP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALA-----LAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHh-----cCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 33344567889999998888776 45678866 567777766667777888888888753
No 373
>PF10867 DUF2664: Protein of unknown function (DUF2664); InterPro: IPR022614 The proteins in this entry belong to the Herpesviridae UL96 family. Currently no function is known.
Probab=36.38 E-value=20 Score=26.62 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.1
Q ss_pred HHHhhhhhcCCCChhHHH
Q 019809 297 AVEILRITHGTNSPFMKE 314 (335)
Q Consensus 297 A~~il~~~~G~~hp~~~~ 314 (335)
=...+...||++||.+..
T Consensus 9 h~~fL~~alG~~HpLt~~ 26 (89)
T PF10867_consen 9 HHQFLRRALGEQHPLTSH 26 (89)
T ss_pred HHHHHHHHhCCCCccHHH
Confidence 345677899999998863
No 374
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=36.28 E-value=24 Score=25.95 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=16.7
Q ss_pred CccCCCCCCcceecCCCCCccccCcCCCCC
Q 019809 146 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 175 (335)
Q Consensus 146 ~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 175 (335)
+.|+ .|+...+......-|.|.+||...
T Consensus 36 ~~Cp--~C~~~~VkR~a~GIW~C~kCg~~f 63 (89)
T COG1997 36 HVCP--FCGRTTVKRIATGIWKCRKCGAKF 63 (89)
T ss_pred CcCC--CCCCcceeeeccCeEEcCCCCCee
Confidence 4453 354333333345679999999855
No 375
>COG1084 Predicted GTPase [General function prediction only]
Probab=36.23 E-value=2.4e+02 Score=26.49 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=56.2
Q ss_pred cCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH--HHhHHHHhcCChHHHHHHHHHH
Q 019809 221 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYY--TCGKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 221 l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p-~~hp~~~~~l~--~La~l~~~~g~~~eA~~~l~~A 297 (335)
+||++..++.+....=+.-..++..+.|...-+++..-|-+... ...|..+..+. -.|.+..-..+.++.+.++.+|
T Consensus 75 LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~ 154 (346)
T COG1084 75 LHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKA 154 (346)
T ss_pred cChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 67776666665554444445555556666666666554544443 55677665444 3455666667888999999999
Q ss_pred HHhhhhhcCCC
Q 019809 298 VEILRITHGTN 308 (335)
Q Consensus 298 ~~il~~~~G~~ 308 (335)
...++....-+
T Consensus 155 r~~l~~LP~Id 165 (346)
T COG1084 155 RDHLKKLPAID 165 (346)
T ss_pred HHHHhcCCCCC
Confidence 99998876633
No 376
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.66 E-value=1.2e+02 Score=30.10 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHH-HHHHHHHHhchhHHHHHHHHHHHH-HHHHHhcCCC
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR-EKLIKILMELEDWKEALAYCQLTI-PVYQRVYPQF 266 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~-~~L~~~~~~~~~~~~Al~~~~~~l-~~~~~~~p~~ 266 (335)
.+.-++.-....|++..|.+++...-.-...-+--+-...--+- ++|+-+...++.|.-+..++.+++ .....+--+.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred ChHHH---------HHHHHHhHHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 267 HPLLG---------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 267 hp~~~---------~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
.|... ..+|++|.++...|+-.+|-.-|.+|+..+..
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
No 377
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=35.42 E-value=95 Score=21.33 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHh
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 217 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~ 217 (335)
...+...|......|++++|+..|..+....
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445666777778899999999998876643
No 378
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.37 E-value=58 Score=21.41 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=15.7
Q ss_pred ccCcCCCCCcHHHHHHHHHHHHHHHH
Q 019809 167 TCQQCGLVRSKEEIKKIASEVNILSK 192 (335)
Q Consensus 167 ~C~~C~~~~~~~~~~~~~~~~~~l~~ 192 (335)
.|+.|+...+.+....+..+....++
T Consensus 22 ~CPlC~r~l~~e~~~~li~~~~~~i~ 47 (54)
T PF04423_consen 22 CCPLCGRPLDEEHRQELIKKYKSEIE 47 (54)
T ss_dssp E-TTT--EE-HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 79999999988777777766655443
No 379
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=34.98 E-value=81 Score=26.06 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=20.7
Q ss_pred ccCCeEEeccccCCcccCCcchhhhhhhcCccCCCCCCcceecCC
Q 019809 117 EQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDS 161 (335)
Q Consensus 117 ~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~ 161 (335)
+.-+|.| ++|...- +..+++-.+|.|+ .|++.+...+
T Consensus 106 ~~~~Y~C--p~c~~r~----tf~eA~~~~F~Cp--~Cg~~L~~~d 142 (158)
T TIGR00373 106 NNMFFIC--PNMCVRF----TFNEAMELNFTCP--RCGAMLDYLD 142 (158)
T ss_pred CCCeEEC--CCCCcEe----eHHHHHHcCCcCC--CCCCEeeecc
Confidence 4456666 7777631 1233444567775 4777665543
No 380
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.74 E-value=3.5e+02 Score=28.30 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=22.9
Q ss_pred HhhhhhcCCCChhHHHHHHHHHHHHHHhcc
Q 019809 299 EILRITHGTNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 299 ~il~~~~G~~hp~~~~l~~~l~~~~~el~~ 328 (335)
.-+...||++||.++.+...+..+++++..
T Consensus 328 ~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~ 357 (726)
T PRK09841 328 AEISQLYKKDHPTYRALLEKRQTLEQERKR 357 (726)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHHH
Confidence 444567899999999998888777665543
No 381
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=34.52 E-value=3.5e+02 Score=24.37 Aligned_cols=126 Identities=15% Similarity=0.009 Sum_probs=65.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhc-----hhHHHHHHHHHHHHHHHHHhc
Q 019809 189 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVY 263 (335)
Q Consensus 189 ~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~-----~~~~~Al~~~~~~l~~~~~~~ 263 (335)
.+++.+-.....+++++|+....+..+ ++|+|+.+--+....+-.+... .|...+..-....-+ +-..|
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~-----lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~-~i~ry 146 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIR-----LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE-LVQRY 146 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH-----hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH-HHHHC
Confidence 344445556677889999888777765 5788877665555444444322 222222222222222 22334
Q ss_pred CCCChHHHHHH--------------HHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHh
Q 019809 264 PQFHPLLGLQY--------------YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 326 (335)
Q Consensus 264 p~~hp~~~~~l--------------~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el 326 (335)
| +++-...+. +.+|+.|...|.+-.|...+++.++-+. +-+.+.+-+..|.++...+
T Consensus 147 P-nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~l 217 (254)
T COG4105 147 P-NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYAL 217 (254)
T ss_pred C-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHh
Confidence 5 333322222 2235556667777777777666665433 2333445444454444333
No 382
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=34.52 E-value=73 Score=26.93 Aligned_cols=36 Identities=28% Similarity=0.596 Sum_probs=19.2
Q ss_pred ccCCeEEeccccCCcccCCcchhhhhhhcCccCCCCCCcceecC
Q 019809 117 EQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRD 160 (335)
Q Consensus 117 ~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~ 160 (335)
+.-+|.| ++|...- +..+++-.+|.|+ .|++.+...
T Consensus 114 ~~~~Y~C--p~C~~ry----tf~eA~~~~F~Cp--~Cg~~L~~~ 149 (178)
T PRK06266 114 NNMFFFC--PNCHIRF----TFDEAMEYGFRCP--QCGEMLEEY 149 (178)
T ss_pred CCCEEEC--CCCCcEE----eHHHHhhcCCcCC--CCCCCCeec
Confidence 3445555 7776631 1223444567774 466666543
No 383
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=34.49 E-value=2.3e+02 Score=22.42 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=61.3
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 278 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La 278 (335)
..++++++...+.......... .......++..+...+++.+|..+....+..... ....+..++
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~ 243 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLA 243 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHH
Confidence 4456777777776665542221 3444566777788888899999988877765543 344556666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhhh
Q 019809 279 KLEWFLGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 279 ~l~~~~g~~~eA~~~l~~A~~il~~ 303 (335)
..+...+.++++...+.+++.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 244 LLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666667789999998888876665
No 384
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=34.49 E-value=36 Score=22.77 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=16.5
Q ss_pred CccCCCCCCcceecCC--CCCccccCcCCC
Q 019809 146 YRCKDDGCSGFLLRDS--DDKGFTCQQCGL 173 (335)
Q Consensus 146 ~~C~~~~C~g~~~~~~--~~~~~~C~~C~~ 173 (335)
..|+.++|...+.... ......|..||.
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~ 48 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGF 48 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCC
Confidence 3577777866555432 344566766664
No 385
>PRK11827 hypothetical protein; Provisional
Probab=34.16 E-value=34 Score=23.38 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=25.9
Q ss_pred hhhhcCccCCCCCCcceecCCCCCccccCcCCCCCcH
Q 019809 141 AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 177 (335)
Q Consensus 141 ~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~ 177 (335)
.+++-+.|+ .|+|.+..+.+.....|..|+.....
T Consensus 4 ~LLeILaCP--~ckg~L~~~~~~~~Lic~~~~laYPI 38 (60)
T PRK11827 4 RLLEIIACP--VCNGKLWYNQEKQELICKLDNLAFPL 38 (60)
T ss_pred HHHhheECC--CCCCcCeEcCCCCeEECCccCeeccc
Confidence 456778896 58888877666666889999976643
No 386
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.87 E-value=80 Score=30.59 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcc
Q 019809 294 MTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 294 l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~ 328 (335)
++.-+.-+...||++||.+..+...++.++..+..
T Consensus 266 le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 266 AESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 33445556677999999999999999988876643
No 387
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.51 E-value=4.7e+02 Score=25.67 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhccc
Q 019809 291 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 329 (335)
Q Consensus 291 ~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~~ 329 (335)
+.-++.-+..+...||++||.++++...++.++..+...
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 444566677777899999999999999999998876544
No 388
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=33.31 E-value=6.3e+02 Score=27.06 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=5.1
Q ss_pred HHHHHHHhchhH
Q 019809 234 KLIKILMELEDW 245 (335)
Q Consensus 234 ~L~~~~~~~~~~ 245 (335)
.+..+|.+.++|
T Consensus 115 ~lFmayvR~~~y 126 (932)
T KOG2053|consen 115 HLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 389
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=33.17 E-value=27 Score=21.14 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=18.3
Q ss_pred ccCCCCCCcceecCCCCCccccCcCCCCC
Q 019809 147 RCKDDGCSGFLLRDSDDKGFTCQQCGLVR 175 (335)
Q Consensus 147 ~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 175 (335)
.|+. |++. ....++..+.|..||+..
T Consensus 10 ~C~~--C~~~-~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 10 PCPV--CGSR-WFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred cCCC--CCCe-EeEccCCEEEhhhCceEc
Confidence 4864 8777 444556678999999854
No 390
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=33.06 E-value=4.1e+02 Score=28.79 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcC-CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHH
Q 019809 251 YCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 319 (335)
Q Consensus 251 ~~~~~l~~~~~~~p-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l 319 (335)
.+.+++..++++.+ +.-| +-|.--|.+|..+|+++|-++.|.-|+.-+ +.||..-.++..+
T Consensus 534 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 595 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAP---LEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHL 595 (932)
T ss_pred HHHHHHHHHHHhcCCCCCc---hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHH
Confidence 34445556666655 3333 334444555677899999999888887643 4788776665544
No 391
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=32.55 E-value=1.5e+02 Score=23.01 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=26.2
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhHH
Q 019809 236 IKILMELEDWKEALAYCQLTIPVYQRVYP--QFHPLLGLQYYTCGKL 280 (335)
Q Consensus 236 ~~~~~~~~~~~~Al~~~~~~l~~~~~~~p--~~hp~~~~~l~~La~l 280 (335)
+..+...|+.-+|+++.+.++..-..--. -.|..-|..++.+|..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ 49 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK 49 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh
Confidence 45677789999999988877653321111 1233345555555544
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=32.06 E-value=1.1e+02 Score=18.32 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=17.5
Q ss_pred HHHHhHHHHhcCChHHHHHHHH
Q 019809 274 YYTCGKLEWFLGDTENAIKSMT 295 (335)
Q Consensus 274 l~~La~l~~~~g~~~eA~~~l~ 295 (335)
++.+|-.+...|++++|++++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 5667888889999999999954
No 393
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.45 E-value=77 Score=30.57 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=44.0
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhc
Q 019809 199 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 263 (335)
Q Consensus 199 ~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~ 263 (335)
--|+|..|++..+.+.--...++..--.....+.+.++.+|+-+++|..|++....++....+.-
T Consensus 134 LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 134 LLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred hccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34788888877665532222233322233345678899999999999999999998887665543
No 394
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.40 E-value=1.8e+02 Score=20.25 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcc
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 220 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~ 220 (335)
...+...|......|++++|+..|..+.......
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445556666667799999999999987765443
No 395
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=31.25 E-value=4.5e+02 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhc
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 305 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~ 305 (335)
.|++++..|......+++.+|+..|++|...++...
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 456667777777788999999999999988888765
No 396
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=31.09 E-value=33 Score=33.20 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=11.4
Q ss_pred CccccCcCCCCCcH
Q 019809 164 KGFTCQQCGLVRSK 177 (335)
Q Consensus 164 ~~~~C~~C~~~~~~ 177 (335)
..+.|..||+..+.
T Consensus 182 ~~f~C~~C~~~seL 195 (446)
T PF07227_consen 182 MQFHCRACGKTSEL 195 (446)
T ss_pred eEEEccCCCChhhH
Confidence 46889999997765
No 397
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.08 E-value=29 Score=31.90 Aligned_cols=31 Identities=35% Similarity=0.874 Sum_probs=25.7
Q ss_pred hhcCccCCCCCCcceecCCCCCccccCc-CCC
Q 019809 143 LEGYRCKDDGCSGFLLRDSDDKGFTCQQ-CGL 173 (335)
Q Consensus 143 ~~~~~C~~~~C~g~~~~~~~~~~~~C~~-C~~ 173 (335)
+.++.|++++|+..+++.++.....|.. ||.
T Consensus 313 ~gGVlCP~pgCG~gll~EPD~rkvtC~~gCgf 344 (446)
T KOG0006|consen 313 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGCGF 344 (446)
T ss_pred cCCEecCCCCCCcccccCCCCCcccCCCCchh
Confidence 4678999999998888888877788876 876
No 398
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=30.91 E-value=9.4 Score=39.10 Aligned_cols=62 Identities=16% Similarity=0.402 Sum_probs=40.7
Q ss_pred HHHHhccCCeEEeccccCCcccCCcchhhhhhhcCccCCCCCCcceecCCCCCccccCcCCCCCcHHHHHH
Q 019809 112 QKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 182 (335)
Q Consensus 112 ~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~ 182 (335)
++.|+ +|.-.|.|+.|.+.+ +|..+ .+|...+|..-+-+.-+...-+|+.|+....+.++..
T Consensus 634 ~EElk-~yK~~LkCs~Cn~R~------Kd~vI--~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 634 AEELK-EYKELLKCSVCNTRW------KDAVI--TKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHHH-HHHhceeCCCccCch------hhHHH--HhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34555 777799999999742 33332 3566666655444444456678999999887766654
No 399
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=30.83 E-value=4.8e+02 Score=24.93 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHh---cCChHHHHHHHHHHH
Q 019809 229 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF---LGDTENAIKSMTEAV 298 (335)
Q Consensus 229 ~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~---~g~~~eA~~~l~~A~ 298 (335)
..+..++.-.|.+.++|+.=+.+.+.+-.+-..-+ ..+|.+ .+..|.++.. .|+.++|+..+..++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~-~~~~~i---~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDV-ANQHNI---KFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccch-hcchHH---HHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 44555777789999999876665443222100002 223332 3344555555 688888888777763
No 400
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=30.76 E-value=92 Score=27.44 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHhHH--HHhcCChHHHHHHHHHHHHhhhhhcCCC
Q 019809 244 DWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKL--EWFLGDTENAIKSMTEAVEILRITHGTN 308 (335)
Q Consensus 244 ~~~~Al~~~~~~l~~~~~~~p~~hp~~~~-~l~~La~l--~~~~g~~~eA~~~l~~A~~il~~~~G~~ 308 (335)
.|+.-..|++++.+..+..+|..|+..-+ .-.+.... +...|+.+++.+.+..+...|+.. |.+
T Consensus 11 gpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~-GAd 77 (230)
T COG1794 11 GPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERA-GAD 77 (230)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhc-CCC
Confidence 46667889999999999999988776543 33344444 566799999999999999999877 655
No 401
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=30.74 E-value=2.3e+02 Score=21.22 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHH-------hhcc--------cCCCChhHHHHHHHHHHHHHhchhHHHHHH
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKL-------QKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALA 250 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l-------~~~~--------l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~ 250 (335)
..++..-+|......|+|++|.++++.+.+. +.++ -.+.+..+.++.+.|+.+... ..
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~AH~~qt~llq~ea~g~~~~~slLlvHAqDhlMta~~~-------~~ 85 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADEELLKAHKIQTELLQQEANGEKVEISLLLVHAQDHLMTAETE-------RD 85 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhHHHHHHHHHH-------HH
Confidence 4455666677777788998888877665431 2111 124456667888888776553 34
Q ss_pred HHHHHHHHHH
Q 019809 251 YCQLTIPVYQ 260 (335)
Q Consensus 251 ~~~~~l~~~~ 260 (335)
+.+.++++|+
T Consensus 86 la~e~i~lyk 95 (96)
T PF02255_consen 86 LAKEMIDLYK 95 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4555555554
No 402
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=5.6e+02 Score=25.61 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=62.3
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 277 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~L 277 (335)
+.++++.||....++.++... --..+..+......|+.+....|+-.++...-+.++....+. ++||.-.+...-+
T Consensus 456 f~qn~lnEaK~~l~e~Lkman--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~ 531 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMAN--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSIL 531 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHH
Confidence 455677887777666665431 111233445556667778888899999988888888877665 4677777777777
Q ss_pred hHHHHhcCC--hHHHHHHHH
Q 019809 278 GKLEWFLGD--TENAIKSMT 295 (335)
Q Consensus 278 a~l~~~~g~--~~eA~~~l~ 295 (335)
-.++...|. .++..+.+.
T Consensus 532 ~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 532 TDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHhCcchhhHHHHHHH
Confidence 788888887 444444443
No 403
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=30.55 E-value=2.7e+02 Score=21.94 Aligned_cols=83 Identities=16% Similarity=0.076 Sum_probs=52.2
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHh------cCCCChHH--HHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 233 EKLIKILMELEDWKEALAYCQLTIPVYQRV------YPQFHPLL--GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 233 ~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~------~p~~hp~~--~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
.+++.++++.|+.+.-..+.+..-.+-..- +++.+|.. ...+..++..+...+++..|++++..-.+.+. .
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I 84 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-I 84 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-C
Confidence 456667777788777666655443322111 44444443 35677778888888999999998887777776 3
Q ss_pred cCCCChhHHHHHH
Q 019809 305 HGTNSPFMKELIL 317 (335)
Q Consensus 305 ~G~~hp~~~~l~~ 317 (335)
..| +.++.+|.+
T Consensus 85 ~i~-~~~W~~Ll~ 96 (126)
T PF12921_consen 85 PIP-KEFWRRLLE 96 (126)
T ss_pred CCC-HHHHHHHHH
Confidence 333 556666554
No 404
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=30.15 E-value=98 Score=17.51 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHhHHHHhc----CChHHHHHHHHHHHH
Q 019809 273 QYYTCGKLEWFL----GDTENAIKSMTEAVE 299 (335)
Q Consensus 273 ~l~~La~l~~~~----g~~~eA~~~l~~A~~ 299 (335)
..++||..+..- .+..+|..++++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 456777776532 367888888888864
No 405
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=29.96 E-value=1.9e+02 Score=24.46 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=39.7
Q ss_pred eCCEEEEEeccccCCCCeEEEeecCCCC--------------CHHHHHHHHhccCCeEEeccccCCcccCCcchhhhhhh
Q 019809 79 EGRLAVVRAVQHVPKGAEVLISYIETAG--------------STMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILE 144 (335)
Q Consensus 79 ~~~~~~~~a~~~i~~g~el~~~Y~~~~~--------------~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~ 144 (335)
+.+.+..+-.++=..|-+...=|++.-. .-..+.+...++-+|.| +.|.-+-. -..++..
T Consensus 58 e~~li~~~k~rd~~~~~~~y~w~~~~~~v~~~l~~~~~~~le~Lk~~le~~~~~~~y~C--~~~~~r~s----fdeA~~~ 131 (176)
T COG1675 58 EDGLISYRKKRDEESGWEEYTWYINYEKVLEVLKGKKRKILEKLKRKLEKETENNYYVC--PNCHVKYS----FDEAMEL 131 (176)
T ss_pred hCCceEEEeecccCCCcEEEEEEechHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeC--CCCCCccc----HHHHHHh
Confidence 4456666777777777554444443311 01233344667788888 77776421 2234556
Q ss_pred cCccCCCCCCccee
Q 019809 145 GYRCKDDGCSGFLL 158 (335)
Q Consensus 145 ~~~C~~~~C~g~~~ 158 (335)
.|.|| .|++.+.
T Consensus 132 ~F~Cp--~Cg~~L~ 143 (176)
T COG1675 132 GFTCP--KCGEDLE 143 (176)
T ss_pred CCCCC--CCCchhh
Confidence 67774 4665554
No 406
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=28.44 E-value=46 Score=28.19 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=20.1
Q ss_pred cCccCCCCCCcceecC-CCCCccccCcCCCCCcHH
Q 019809 145 GYRCKDDGCSGFLLRD-SDDKGFTCQQCGLVRSKE 178 (335)
Q Consensus 145 ~~~C~~~~C~g~~~~~-~~~~~~~C~~C~~~~~~~ 178 (335)
.|.|++ |+-..... ..+..+.|+.||......
T Consensus 117 ~Y~Cp~--C~~rytf~eA~~~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 117 FFFCPN--CHIRFTFDEAMEYGFRCPQCGEMLEEY 149 (178)
T ss_pred EEECCC--CCcEEeHHHHhhcCCcCCCCCCCCeec
Confidence 688965 65333222 224579999999876543
No 407
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=28.26 E-value=4.9e+02 Score=24.20 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHh
Q 019809 177 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 217 (335)
Q Consensus 177 ~~~~~~~~~~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~ 217 (335)
.+.|..+...+..+++.+..+...|+.++|..++..+..+.
T Consensus 121 ~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk 161 (319)
T KOG0796|consen 121 AEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELK 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 35567777888888999999999999999999888877664
No 408
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=28.10 E-value=2.3e+02 Score=20.30 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhcc
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 220 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~~ 220 (335)
........|..+...|++++|+..|+.+.+...++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34455667777888999999999999987765443
No 409
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=27.94 E-value=3.2e+02 Score=21.87 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=46.3
Q ss_pred HhhhhcCChHHHHHHHHHHHHHhhcccCCCC-----hhH--HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCC
Q 019809 195 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-----VNL--MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 265 (335)
Q Consensus 195 ~~~~~~g~~~ea~~l~~~~l~l~~~~l~~~h-----~~l--~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~ 265 (335)
+.....+++-.++-.|++++.+...+...+. ..+ .-+.++|+..+..+||-+-.++|.+.+-+-.-.+.|.
T Consensus 9 d~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 9 DQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccC
Confidence 3334555666666666766666554432221 112 2345789999999999999999999887766666664
No 410
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.80 E-value=2.4e+02 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHh
Q 019809 187 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 217 (335)
Q Consensus 187 ~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~ 217 (335)
+...++.|.+....|..++|+..|++.+...
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 3445566667777789999999999887643
No 411
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=27.79 E-value=2.1e+02 Score=22.81 Aligned_cols=54 Identities=28% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHhHHHHhcCChHHHHHHHHHHHHh----hhhhcCCCChhHHHHHHHHHHHHH
Q 019809 271 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI----LRITHGTNSPFMKELILKLEEAQA 324 (335)
Q Consensus 271 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i----l~~~~G~~hp~~~~l~~~l~~~~~ 324 (335)
|...+..|......|.++.|.-+-++|++. +-...|.+.|.|.++.+.+..+..
T Consensus 13 A~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~ 70 (132)
T COG2250 13 AERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSR 70 (132)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 344455566666778777766665555433 333445556666666666655543
No 412
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=4.9e+02 Score=23.98 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=68.3
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH--
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY-- 275 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~-- 275 (335)
...|++-+|..+|+.+.-...+ -..|.+-......-+....+.++..-|.+++..+++.+++ ..++..+.
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~--~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek------a~~ad~~~~~ 88 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTR--QKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK------AEVADSLLKV 88 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH------HHhhHhHHHH
Confidence 3557888888888776543322 1124444444555556666777777888898888998887 44444444
Q ss_pred -HHhHHHHhcCChHHH-HHHHHHHHHhhhhh-cC-CCChhHHHHHH
Q 019809 276 -TCGKLEWFLGDTENA-IKSMTEAVEILRIT-HG-TNSPFMKELIL 317 (335)
Q Consensus 276 -~La~l~~~~g~~~eA-~~~l~~A~~il~~~-~G-~~hp~~~~l~~ 317 (335)
+|+.+....+.-+.. ..++++|++.-..- .| -.||....++.
T Consensus 89 anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la 134 (312)
T KOG3024|consen 89 ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLA 134 (312)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 555555555444444 44666777766653 33 34887766553
No 413
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.73 E-value=42 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.542 Sum_probs=19.7
Q ss_pred ccCCCCCCcceecCCCCCccccCcCCCCCcHH
Q 019809 147 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKE 178 (335)
Q Consensus 147 ~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~ 178 (335)
.|+ +|+..+.--+. .+..|++||.....+
T Consensus 11 ~Cp--~CG~kFYDLnk-~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCP--SCGAKFYDLNK-DPIVCPKCGTEFPPE 39 (108)
T ss_pred cCC--CCcchhccCCC-CCccCCCCCCccCcc
Confidence 464 47665544333 568899999988776
No 414
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=27.52 E-value=60 Score=20.57 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=8.6
Q ss_pred CCccccCcCCC
Q 019809 163 DKGFTCQQCGL 173 (335)
Q Consensus 163 ~~~~~C~~C~~ 173 (335)
...|.|..|+.
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 46789999875
No 415
>PF02748 PyrI_C: Aspartate carbamoyltransferase regulatory chain, metal binding domain; InterPro: IPR020542 Aspartate carbamoyltransferase (aspartate transcarbamylase, ATCase) 2.1.3.2 from EC is an allosteric enzyme that plays a central role in the regulation of the pyrimidine pathway in bacteria. The holoenzyme is a dodecamer composed of six catalytic chains, each with an active site, and six regulatory chains lacking catalytic activity []. The catalytic subunits exist as a dimer of catalytic trimers, (c3)2, while the regulatory subunits exist as a trimer of regulatory dimers, (r2)3, therefore the complete holoenzyme can be represented as (c3)2(r2)3. The association of the catalytic subunits c3 with the regulatory subunits r2 is responsible for the establishment of positive co-operativity between catalytic sites for the binding of aspartate and it dictates the pattern of allosteric response toward nucleotide effectors. ATCase from Escherichia coli is the most extensively studied allosteric enzyme []. The crystal structure of the T-state, the T-state with CTP bound, the R-state with N-phosphonacetyl-L-aspartate (PALA) bound, and the R-state with phosphonoacetamide plus malonate bound have been used in interpreting kinetic and mutational studies. A high-resolution structure of E. coli ATCase in the presence of PALA (a bisubstrate analog) allows a detailed description of the binding at the active site of the enzyme and allows a detailed model of the tetrahedral intermediate to be constructed. The entire regulatory chain has been traced showing that the N-terminal regions of the regulatory chains R1 and R6 are located in close proximity to each other and to the regulatory site. This portion of the molecule may be involved in the observed asymmetry between the regulatory binding sites as well as in the heterotropic response of the enzyme []. The C-terminal domain of the regulatory chains have a rubredoxin-like zinc-bound fold. ATCase from Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans) differs from the other investigated enterobacterial ATCases by its absence of homotropic co-operativity toward the substrate aspartate and its lack of response to ATP which is an allosteric effector (activator) of this family of enzymes. Nevertheless, the E. herbicola ATCase has the same quaternary structure, two trimers of catalytic chains with three dimers of regulatory chains, (c3)2(r2)3, as other enterobacterial ATCases and shows extensive primary structure conservation []. This entry represents the C-terminal domain.; PDB: 2YWW_B 1SKU_D 1Q95_L 8ATC_B 3AT1_D 1RAI_D 4E2F_D 1NBE_B 6AT1_B 2FZC_D ....
Probab=27.42 E-value=53 Score=21.70 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=13.1
Q ss_pred CCCCccccCcCCCCCcHHHH
Q 019809 161 SDDKGFTCQQCGLVRSKEEI 180 (335)
Q Consensus 161 ~~~~~~~C~~C~~~~~~~~~ 180 (335)
.+....+|.-|+...+.+++
T Consensus 31 ~~~~~~rC~YCe~~~~~~eI 50 (52)
T PF02748_consen 31 KEPIKLRCHYCERIITEDEI 50 (52)
T ss_dssp TTTCEEEETTT--EEEHHHH
T ss_pred CCCCEEEeeCCCCEecccEE
Confidence 34567889999998877654
No 416
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=27.35 E-value=3.4e+02 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 267 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 267 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
+-..|.+++..|......+++.+|+..|+.|.+.++..
T Consensus 243 ~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 280 (353)
T cd09246 243 AYFRAEALYRAAKDLHEKEDIGEEIARLRAASDALAEA 280 (353)
T ss_pred HHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHH
Confidence 44567777888888888899999999999887765544
No 417
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=27.26 E-value=5.3e+02 Score=24.26 Aligned_cols=37 Identities=5% Similarity=0.009 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 268 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 268 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
-..+.+++..|......+++.+++..|+.|...++..
T Consensus 234 ~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a 270 (355)
T cd09241 234 HFKAAAHYRMALVALEKSKYGEEVARLRVALAACKEA 270 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777788999999999888866433
No 418
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.20 E-value=4e+02 Score=22.82 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=35.2
Q ss_pred HHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 259 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 259 ~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
.+-+-++.+|.+.....-||...+..|++.+|.++|.+..+
T Consensus 155 vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 155 VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44455688999999999999999999999999999987665
No 419
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=27.15 E-value=3.7e+02 Score=25.71 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhh
Q 019809 231 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 301 (335)
Q Consensus 231 ~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp-----~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il 301 (335)
..+.|..+|.+++.++- |+.++...+.+-+++++ ++-...|-||..+....++.+|-..+.+|.--.
T Consensus 179 iaNlL~~iY~Rl~~~~l----~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c 250 (413)
T COG5600 179 IANLLFQIYLRLGRFKL----CENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQC 250 (413)
T ss_pred HHHHHHHHHHHhccHHH----HHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 34567778888887754 45555555556667776 233455678999999999999988888876533
No 420
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.81 E-value=1.6e+02 Score=30.40 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=25.9
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHH
Q 019809 236 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 296 (335)
Q Consensus 236 ~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 296 (335)
.+...+.++|.+|..+.++.=+..+.+ ++--|+.+.+..+++||.+.|.+
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~dV-----------y~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDDV-----------YMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred hhheeecccchHhHhhhhhCccccccc-----------cchHHHHhhhhhhHHHHHHHHHH
Confidence 344456688888887665533222222 23334444455555555555543
No 421
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.76 E-value=1.4e+02 Score=29.04 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC----------CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHH
Q 019809 230 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP----------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 299 (335)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p----------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 299 (335)
-.++.-+++.+....|.+|+.....+=+.+...-+ --.....|-|+.|- ....+.+|..-+.+|-.
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLk----nitcL~DAe~RL~ra~k 239 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLK----NITCLPDAEVRLVRARK 239 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhc----ccccCChHHHHHHHHHH
Confidence 45566778888889999998876655443322211 11111222222222 23567899999999999
Q ss_pred hhhhhcCCCChhHHHH
Q 019809 300 ILRITHGTNSPFMKEL 315 (335)
Q Consensus 300 il~~~~G~~hp~~~~l 315 (335)
-++..||.+|.-...+
T Consensus 240 gf~~syGenl~Rl~~l 255 (568)
T KOG2561|consen 240 GFERSYGENLSRLRSL 255 (568)
T ss_pred hhhhhhhhhhHhhhhc
Confidence 9999999887655443
No 422
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=26.56 E-value=2.9e+02 Score=21.06 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHH-------hhccc--------CCCChhHHHHHHHHHHHHHhchhHHHHHH
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKL-------QKKLY--------HPFSVNLMQTREKLIKILMELEDWKEALA 250 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l-------~~~~l--------~~~h~~l~~~~~~L~~~~~~~~~~~~Al~ 250 (335)
..++..-.|......|+|++|..+.+.+.+. +.+++ .+.+..+.++.+.|+.+.. ...
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~AH~~qt~liq~Ea~g~~~~~slLlvHAQDhLMta~~-------~~~ 91 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEAHHAQTKLLQEYASGTEIKIEIIMVHAQDHLMTTMT-------LRE 91 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeehhHHHHHHHHHH-------HHH
Confidence 4556666777777889999998877665442 22211 2334556677777776554 334
Q ss_pred HHHHHHHHHHH
Q 019809 251 YCQLTIPVYQR 261 (335)
Q Consensus 251 ~~~~~l~~~~~ 261 (335)
+.+.++++|++
T Consensus 92 la~elI~lyk~ 102 (104)
T PRK09591 92 VAKEMLALYKK 102 (104)
T ss_pred HHHHHHHHHHh
Confidence 55555666654
No 423
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=26.24 E-value=3.3e+02 Score=24.59 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHH
Q 019809 203 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 281 (335)
Q Consensus 203 ~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~-~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~ 281 (335)
.+.|..++.++.+ ....++.+ +...|.. |...++.+.|...++..+.. ||. .+.+-+.|. ..+
T Consensus 17 ~~~aR~vF~~a~~-----~~~~~~~v---y~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~-~~~~~~~Y~---~~l 80 (280)
T PF05843_consen 17 IEAARKVFKRARK-----DKRCTYHV---YVAYALMEYYCNKDPKRARKIFERGLKK----FPS-DPDFWLEYL---DFL 80 (280)
T ss_dssp HHHHHHHHHHHHC-----CCCS-THH---HHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT--HHHHHHHH---HHH
T ss_pred hHHHHHHHHHHHc-----CCCCCHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCC-CHHHHHHHH---HHH
Confidence 5677788887752 12223333 2223333 33356777788888887753 443 344433333 345
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 019809 282 WFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 282 ~~~g~~~eA~~~l~~A~~i 300 (335)
...++.+.|+.+|++|+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS 99 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh
Confidence 5678999999999988664
No 424
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.73 E-value=3.7e+02 Score=21.91 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhhcCC---hHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 019809 188 NILSKKTLALTSCGN---HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 257 (335)
Q Consensus 188 ~~l~~~a~~~~~~g~---~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~ 257 (335)
+..++.|+.+..+.+ ..+-+.+++.+++ .-||.. -....+-|+-.+.++++|++|+.|+..+++
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPER--RRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 445566666655443 3344455554443 112221 233455677788899999999999887775
No 425
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=25.22 E-value=3e+02 Score=30.38 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=16.2
Q ss_pred HHHhHHHHhcCChHHHHHHHHHH
Q 019809 275 YTCGKLEWFLGDTENAIKSMTEA 297 (335)
Q Consensus 275 ~~La~l~~~~g~~~eA~~~l~~A 297 (335)
.+-|..|...|+.++|++.++.+
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHh
Confidence 34455566679999999987654
No 426
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=25.18 E-value=97 Score=29.16 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Q 019809 265 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 325 (335)
Q Consensus 265 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~e 325 (335)
......|..+.++|.+|..-|+++.|.-+|-+=..++-.. =+.||.++.+....+++.+.
T Consensus 29 kryfRsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEk-ipkHrDy~s~k~ek~d~~~k 88 (424)
T KOG2880|consen 29 KRYFRSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEK-IPKHRDYRSVKPEKEDIRKK 88 (424)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHh-cccCcchhhhchhHHHHHHH
Confidence 3344567788899999999999999999888877776655 35788777666666666543
No 427
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=24.90 E-value=5.8e+02 Score=23.91 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=38.7
Q ss_pred HHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcC--CCChhHHHHHHHHHHHHHHhcccc
Q 019809 270 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG--TNSPFMKELILKLEEAQAEASYKL 330 (335)
Q Consensus 270 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G--~~hp~~~~l~~~l~~~~~el~~~~ 330 (335)
.+.+.+..|..+...+++.+++..|+.|...++..-. +....++++...+.....+.+.+|
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~~~~~~~l~~~i~~~l~~aekDN 316 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGEYVDVKDFAAKISRALTAAKKDN 316 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhcc
Confidence 3666777777777789999999999999887754422 111224555555555544444433
No 428
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=24.85 E-value=1.8e+02 Score=25.88 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCCh
Q 019809 266 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 310 (335)
Q Consensus 266 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~hp 310 (335)
.-+..+..++++|.-++..|++++|.-+|..|..+++-.--|-|.
T Consensus 109 ~A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P~Ha 153 (241)
T smart00770 109 NAKDTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLGDLSTPYHA 153 (241)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCcccc
Confidence 345567788999999999999999999999999999988766665
No 429
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=6e+02 Score=24.05 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=57.7
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCC---ChhHH
Q 019809 237 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMK 313 (335)
Q Consensus 237 ~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~---hp~~~ 313 (335)
.+....+|.++|+++..++++-....--+ -.+.......|.++...|++.++++.+.+...++....|-. |..+.
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 34445568999999999988766544322 23445566778888899999999999999999888776633 44444
Q ss_pred HHHHHHHH
Q 019809 314 ELILKLEE 321 (335)
Q Consensus 314 ~l~~~l~~ 321 (335)
.+-.+.-.
T Consensus 161 ~lssqYyk 168 (380)
T KOG2908|consen 161 SLSSQYYK 168 (380)
T ss_pred HHHHHHHH
Confidence 44444433
No 430
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=24.77 E-value=41 Score=21.76 Aligned_cols=27 Identities=22% Similarity=0.758 Sum_probs=16.5
Q ss_pred CccCCCCCC-cceecCCCCCccccCcCCC
Q 019809 146 YRCKDDGCS-GFLLRDSDDKGFTCQQCGL 173 (335)
Q Consensus 146 ~~C~~~~C~-g~~~~~~~~~~~~C~~C~~ 173 (335)
-.||++.|+ |.++..-. ..|.|-+||.
T Consensus 19 k~CP~~~CG~GvFMA~H~-dR~~CGKCg~ 46 (47)
T PF01599_consen 19 KECPSPRCGAGVFMAEHK-DRHYCGKCGY 46 (47)
T ss_dssp EE-TSTTTTSSSEEEE-S-SEEEETTTSS
T ss_pred hcCCCcccCCceEeeecC-CCccCCCccc
Confidence 458877885 55554433 3588988886
No 431
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=24.25 E-value=66 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHhhhhhcCCCChhHHHHHHHHHHH
Q 019809 293 SMTEAVEILRITHGTNSPFMKELILKLEEA 322 (335)
Q Consensus 293 ~l~~A~~il~~~~G~~hp~~~~l~~~l~~~ 322 (335)
.|+.|+++|+..||..+-....+...|..+
T Consensus 55 ~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l 84 (145)
T PF03564_consen 55 NYEEAWELLEERYGNPRRIIQALLEELRNL 84 (145)
T ss_pred hhHHHHHHHHHHhCCchHHHHHHHHHHhcc
Confidence 466677777777776666555555555444
No 432
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.05 E-value=5.1e+02 Score=22.93 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHH---------hcCChHHHHHHHHHHHHhhhhh
Q 019809 269 LLGLQYYTCGKLEW---------FLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 269 ~~~~~l~~La~l~~---------~~g~~~eA~~~l~~A~~il~~~ 304 (335)
.+|-.+-.+|.++. ..++...|..+|++|+.+-...
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 34444445555552 4467788999999999875444
No 433
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=23.41 E-value=3.6e+02 Score=20.91 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=15.9
Q ss_pred HhHHHHhcCChHHHHHHHHHHHHhhh
Q 019809 277 CGKLEWFLGDTENAIKSMTEAVEILR 302 (335)
Q Consensus 277 La~l~~~~g~~~eA~~~l~~A~~il~ 302 (335)
.|......|+++++...+.+|.+|+.
T Consensus 35 ~a~~a~~~~~~~~~~~~l~ka~~Ii~ 60 (122)
T PF02561_consen 35 QAKEAIEQGDIEEKNEALQKAQDIIT 60 (122)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34445556666777777777666655
No 434
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.40 E-value=1.8e+02 Score=20.08 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 019809 1 MSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSK 39 (335)
Q Consensus 1 ~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~ 39 (335)
|.+|++.+...+..+...+..-- -.++..||.+.++.
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~~G--~~Pt~rEIa~~~g~ 37 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEENG--YPPTVREIAEALGL 37 (65)
T ss_dssp -----HHHHHHHHHHHHHHHHHS--S---HHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--CCCCHHHHHHHhCC
Confidence 78899999988888877776643 24578888887774
No 435
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=23.39 E-value=62 Score=20.52 Aligned_cols=8 Identities=38% Similarity=1.360 Sum_probs=3.8
Q ss_pred cccCcCCC
Q 019809 166 FTCQQCGL 173 (335)
Q Consensus 166 ~~C~~C~~ 173 (335)
..|..||.
T Consensus 20 irC~~CG~ 27 (44)
T smart00659 20 VRCRECGY 27 (44)
T ss_pred eECCCCCc
Confidence 44555544
No 436
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=23.19 E-value=92 Score=23.68 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.7
Q ss_pred EEeccccCCCCeEEEeecCC
Q 019809 85 VRAVQHVPKGAEVLISYIET 104 (335)
Q Consensus 85 ~~a~~~i~~g~el~~~Y~~~ 104 (335)
+.+...++.|++|+|.|...
T Consensus 43 aKpS~~VK~GD~l~i~~~~~ 62 (100)
T COG1188 43 AKPSKEVKVGDILTIRFGNK 62 (100)
T ss_pred cccccccCCCCEEEEEeCCc
Confidence 37888999999999999643
No 437
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=7.9e+02 Score=24.73 Aligned_cols=84 Identities=18% Similarity=0.074 Sum_probs=46.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHH-------h-cCChHHHHHHHHHHHHhhhh
Q 019809 232 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-------F-LGDTENAIKSMTEAVEILRI 303 (335)
Q Consensus 232 ~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~-------~-~g~~~eA~~~l~~A~~il~~ 303 (335)
...++-.++.+.+|..|..++..+.+... ++.-+ .-|-.|-.+. . .|+.++|-. +.+....+..
T Consensus 306 ~fE~aw~~v~~~~~~~aad~~~~L~desd-----WS~a~--Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~-~~k~~~~l~~ 377 (546)
T KOG3783|consen 306 VFERAWLSVGQHQYSRAADSFDLLRDESD-----WSHAF--YTYFAGCCLLQNWEVNQGAGGNEEKAQL-YFKVGEELLA 377 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhh-----hhHHH--HHHHHHHHHhccHHHHHhcccchhHHHH-HHHHHHHHHH
Confidence 34556666777889999888887776543 22211 1122222221 1 234444444 4444444445
Q ss_pred hcCCCChhHHHHHHHHHHHH
Q 019809 304 THGTNSPFMKELILKLEEAQ 323 (335)
Q Consensus 304 ~~G~~hp~~~~l~~~l~~~~ 323 (335)
.-|++-|.-+-+.++.+.-.
T Consensus 378 ~a~K~~P~E~f~~RKverf~ 397 (546)
T KOG3783|consen 378 NAGKNLPLEKFIVRKVERFV 397 (546)
T ss_pred hccccCchhHHHHHHHHHHh
Confidence 55788887777777776543
No 438
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=22.83 E-value=2.2e+02 Score=26.84 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHhhhhh
Q 019809 268 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 304 (335)
Q Consensus 268 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~il~~~ 304 (335)
-..+.+++..|..+...+++.+|+..|+.|...++..
T Consensus 241 ~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 241 YYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777889999999999998877744
No 439
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=22.83 E-value=1.8e+02 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=20.5
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHhc
Q 019809 301 LRITHGTNSPFMKELILKLEEAQAEAS 327 (335)
Q Consensus 301 l~~~~G~~hp~~~~l~~~l~~~~~el~ 327 (335)
...+||++||....+...+..++.||.
T Consensus 104 V~~VHg~~~p~l~~l~~lf~~l~~eL~ 130 (224)
T PRK13276 104 LSKVHGPNHPYLVELKETYDTFKNGML 130 (224)
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHHH
Confidence 345679999998888888877766554
No 440
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.65 E-value=1.3e+02 Score=26.93 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=36.6
Q ss_pred HhchhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHHHHHHHHHHHHh
Q 019809 240 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 300 (335)
Q Consensus 240 ~~~~~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 300 (335)
...+|.+.|.+.+.++++.. |.-+.-++++|.-....|+++.|.+.|++.+++
T Consensus 6 ~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34567777777777766533 344455677888777888888888888776554
No 441
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]
Probab=22.55 E-value=5.3e+02 Score=23.44 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhHHHHhcCChHH--HHH-HHHHHHHhhhh
Q 019809 244 DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTEN--AIK-SMTEAVEILRI 303 (335)
Q Consensus 244 ~~~~Al~~~~~~l~~~~~~~p~~hp~~~~~l~~La~l~~~~g~~~e--A~~-~l~~A~~il~~ 303 (335)
.+...+....++++-.+..||...|...|.+--||-.....+-... ++. .|++.++|+..
T Consensus 202 A~~s~~~~lir~LKDlr~r~~~F~PLs~W~ldll~h~avmNnp~RQ~l~ln~Afrr~~qilaA 264 (362)
T KOG3793|consen 202 ASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAA 264 (362)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHHh
Confidence 3445566677778888899999999999999989888776553333 332 47788887763
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=22.42 E-value=2.9e+02 Score=19.59 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhc
Q 019809 186 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 219 (335)
Q Consensus 186 ~~~~l~~~a~~~~~~g~~~ea~~l~~~~l~l~~~ 219 (335)
+...++..|......|++++|...|...+.....
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445566666667779999999999998876544
No 443
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.35 E-value=63 Score=32.20 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=7.6
Q ss_pred ccccCcCCCC
Q 019809 165 GFTCQQCGLV 174 (335)
Q Consensus 165 ~~~C~~C~~~ 174 (335)
+|.|+.||..
T Consensus 253 ~~~Cp~C~s~ 262 (505)
T TIGR00595 253 PKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCC
Confidence 5778888874
No 444
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=2.6e+02 Score=25.33 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=32.5
Q ss_pred HhHHHHhcCChHHHHHHHHHHHHhhhhhc---CCCChhHHHHHHHH
Q 019809 277 CGKLEWFLGDTENAIKSMTEAVEILRITH---GTNSPFMKELILKL 319 (335)
Q Consensus 277 La~l~~~~g~~~eA~~~l~~A~~il~~~~---G~~hp~~~~l~~~l 319 (335)
=|.-++.+|++.||..-|++|+.+++... -|..|.+.++-.++
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~ 229 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMI 229 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhh
Confidence 35556677999999999999998887653 46677888766554
No 445
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=22.19 E-value=8.4e+02 Score=24.80 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh-cCCCChHHHHHHHHH
Q 019809 203 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-YPQFHPLLGLQYYTC 277 (335)
Q Consensus 203 ~~ea~~l~~~~l~l~~~~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~-~p~~hp~~~~~l~~L 277 (335)
-..++.+|.++....+..+...|.+= +.-++.-|.+.+++.+|+.....+-++...+ |..+.-.+--.++.+
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYP---Yty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYP---YTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHH---HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcccc---ceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 34567788887777666777666432 2346667888899999999888877766554 334443333333333
No 446
>PRK14873 primosome assembly protein PriA; Provisional
Probab=22.16 E-value=56 Score=33.81 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=15.1
Q ss_pred ccccCcCCCCCc---HHHHHHHHHHHHHHH
Q 019809 165 GFTCQQCGLVRS---KEEIKKIASEVNILS 191 (335)
Q Consensus 165 ~~~C~~C~~~~~---~~~~~~~~~~~~~l~ 191 (335)
+|.|+.||...= ..-.+++.++++.++
T Consensus 422 p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~F 451 (665)
T PRK14873 422 DWRCPRCGSDRLRAVVVGARRTAEELGRAF 451 (665)
T ss_pred CccCCCCcCCcceeeeccHHHHHHHHHHHC
Confidence 588999987531 122345555555444
No 447
>PRK05978 hypothetical protein; Provisional
Probab=21.87 E-value=61 Score=26.57 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.5
Q ss_pred cCCeEEeccccCC
Q 019809 118 QYLFTCTCPRCIK 130 (335)
Q Consensus 118 ~~~F~C~C~~C~~ 130 (335)
..++.|+|++|.+
T Consensus 29 ~rGl~grCP~CG~ 41 (148)
T PRK05978 29 WRGFRGRCPACGE 41 (148)
T ss_pred HHHHcCcCCCCCC
Confidence 4578899999988
No 448
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=21.69 E-value=60 Score=21.59 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.4
Q ss_pred EEEeccccCCCCeEEE
Q 019809 84 VVRAVQHVPKGAEVLI 99 (335)
Q Consensus 84 ~~~a~~~i~~g~el~~ 99 (335)
.++|.++|++|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4678899999999874
No 449
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.68 E-value=73 Score=21.89 Aligned_cols=32 Identities=22% Similarity=0.591 Sum_probs=19.9
Q ss_pred cCccCCCCCCcceecCCCCCccccCcCCCCCcHH
Q 019809 145 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKE 178 (335)
Q Consensus 145 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~ 178 (335)
+-.|+ .|+...........|.|+.||...+.+
T Consensus 28 Sq~C~--~CG~~~~~~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 28 SQTCP--RCGHRNKKRRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred ccCcc--CcccccccccccceEEcCCCCCEECcH
Confidence 34454 355444433445678999999977654
No 450
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=21.35 E-value=1.9e+02 Score=25.00 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=25.9
Q ss_pred HHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHhcc
Q 019809 294 MTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 328 (335)
Q Consensus 294 l~~A~~il~~~~G~~hp~~~~l~~~l~~~~~el~~ 328 (335)
|..-..-+++.||+.|+.-..+.+.|+.+++||+.
T Consensus 95 Li~latKverVHgd~p~~p~gl~~~L~~l~~eL~~ 129 (221)
T COG2846 95 LIPLATKVERVHGDKPSCPAGLAELLEALKEELES 129 (221)
T ss_pred HHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHH
Confidence 33334445678999999999998888888777653
No 451
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=21.30 E-value=1.8e+02 Score=16.73 Aligned_cols=13 Identities=38% Similarity=0.330 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHH
Q 019809 287 TENAIKSMTEAVE 299 (335)
Q Consensus 287 ~~eA~~~l~~A~~ 299 (335)
.++|..+|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5778888888764
No 452
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.90 E-value=72 Score=18.64 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=9.7
Q ss_pred CccccCcCCCCC
Q 019809 164 KGFTCQQCGLVR 175 (335)
Q Consensus 164 ~~~~C~~C~~~~ 175 (335)
.+|.|+.||...
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 579999999844
No 453
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.28 E-value=6.8e+02 Score=23.03 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=56.7
Q ss_pred hhcCChHHHHHHHHHHHHHhhc-ccCCCChhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Q 019809 198 TSCGNHQEVVSTYKMIEKLQKK-LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYY 275 (335)
Q Consensus 198 ~~~g~~~ea~~l~~~~l~l~~~-~l~~~h~~l~~~~~~L~~~~~~~~~~~~Al~~~~~~l~~~~~~~p-~~hp~~~~~l~ 275 (335)
...+++.+....|++++.-... +-...+-. +.+.+..--....+.+---++++-.++.++..-. ..+.. .-.
T Consensus 76 f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK---sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK---TNt 149 (440)
T KOG1464|consen 76 FRLGNYKEMMERYKQLLTYIKSAVTRNYSEK---SINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK---TNT 149 (440)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhccccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee---ccc
Confidence 4567888888888877664322 22111111 1222222222233334344455655655542211 11111 224
Q ss_pred HHhHHHHhcCChHHHHHHHHHHHHhhhhhcCCCC
Q 019809 276 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 309 (335)
Q Consensus 276 ~La~l~~~~g~~~eA~~~l~~A~~il~~~~G~~h 309 (335)
+||++++..+.+..-.+.+++-..-.+..-|.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 6788888888888888877777776666667654
No 454
>PRK00420 hypothetical protein; Validated
Probab=20.07 E-value=4.3e+02 Score=20.56 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=18.0
Q ss_pred cCccCCCCCCcceecCCCCCccccCcCCCCCc
Q 019809 145 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 176 (335)
Q Consensus 145 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~ 176 (335)
+-.|| .|+.++.-. ......|+.||....
T Consensus 23 ~~~CP--~Cg~pLf~l-k~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 23 SKHCP--VCGLPLFEL-KDGEVVCPVHGKVYI 51 (112)
T ss_pred cCCCC--CCCCcceec-CCCceECCCCCCeee
Confidence 34575 376666543 234578999998554
No 455
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=20.04 E-value=93 Score=23.17 Aligned_cols=29 Identities=21% Similarity=0.521 Sum_probs=15.7
Q ss_pred cCccCCCCCCcceecCCCCCccccCcCCCCC
Q 019809 145 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 175 (335)
Q Consensus 145 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 175 (335)
.+.|+ .|+..-+......-|.|.+|+...
T Consensus 35 ky~Cp--~Cgk~~vkR~a~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 35 KYTCP--FCGKTSVKRVATGIWKCKKCGKKF 63 (90)
T ss_dssp -BEES--SSSSSEEEEEETTEEEETTTTEEE
T ss_pred CCcCC--CCCCceeEEeeeEEeecCCCCCEE
Confidence 34453 354333332334569999998744
No 456
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=20.02 E-value=1.4e+02 Score=23.47 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=25.1
Q ss_pred ccCcEEEEeCCEEEEEeccccCCCCeEEEeecCC
Q 019809 71 LPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIET 104 (335)
Q Consensus 71 ~pn~~~~~~~~~~~~~a~~~i~~g~el~~~Y~~~ 104 (335)
.|.-.+.++|..+..++..+|++|+++.|.=++.
T Consensus 102 ~~~G~V~~~G~~w~A~s~~~i~~G~~V~Vv~v~g 135 (144)
T PF01957_consen 102 NGSGRVKVDGERWRARSEDEIPKGDRVRVVGVEG 135 (144)
T ss_dssp SS-EEEEETTEEEEEEESSTB-TT-EEEEEEEES
T ss_pred CCcEEEEECCeEEEEEeCCCCCCCCEEEEEEEEC
Confidence 4555677889899999999999999998876543
Done!