BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019811
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 201 bits (511), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/270 (41%), Positives = 167/270 (61%), Gaps = 18/270 (6%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA A+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNT 188
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K + ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 189 KQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 233
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
+RV +KG+ FVR+STH AA AI N T
Sbjct: 234 IRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 196 AQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEA 255
A +A+ + G+ + ++++ NWAT S K+T+N
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATT----------------------PSSQKKDTSN--- 95
Query: 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHA 311
+ V+VG+L+PE+T D+ F G A V++++ + KG+GFV +
Sbjct: 96 ------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 149
Query: 312 EAALAI-QMGNTTQSSYLFGKQMKV 335
+A AI MG +L G+Q++
Sbjct: 150 DAENAIVHMG----GQWLGGRQIRT 170
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ YGF+ ++++ A
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151
Query: 108 AMAILSLNGRHLFGQPIKVNWAY------ASGQREDTS-------------GHFNIFVGD 148
AI+ + G+ L G+ I+ NWA S Q +T + ++ G
Sbjct: 152 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 211
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
++ +TD + FS + + RV +G+ FV F + A AI + G +
Sbjct: 212 IASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTI 265
Query: 209 GSRQIRCNWATKGAGNNEDKQSSD 232
++C W + ++ Q D
Sbjct: 266 EGHVVKCYWGKESPDMTKNFQQVD 289
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 168/287 (58%), Gaps = 35/287 (12%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSS-------------YG 97
R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 98 FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDA 156
F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTE 128
Query: 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216
+ + F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR N
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276
WAT+ + Q ++ K + ++ N +P+N TVY G +A +T
Sbjct: 189 WATRKPPAPKSTQETNTKQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTD 235
Query: 277 LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
+ + F G I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 236 QLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 55/219 (25%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-------------------- 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 --PSSQKKDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMK 334
+ KG+GFV + +A AI MG +L G+Q++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMG----GQWLGGRQIR 186
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWAY------ASGQREDTS-------------GHFNIFVGD 148
AI+ + G+ L G+ I+ NWA S Q +T + ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
++ +TD + FS + + RV +G+ FV F + A AI + G +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 209 GSRQIRCNWATKGAGNNEDKQSSD 232
++C W + ++ Q D
Sbjct: 283 EGHVVKCYWGKESPDMTKNFQQVD 306
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 163/281 (58%), Gaps = 29/281 (10%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E N +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 29/183 (15%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSL 114
V+VG++ ++T ++ F+ G + ++++ YGF+ +F++ A AI +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 115 NGRHLFGQPIKVNWA----------YASGQRE---------DTSGHFNIFVGDLSPEVTD 155
G+ L G+ I+ NWA Y S ++ + + ++ G ++ +T+
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
+ FS + + RV D +G+ FV F + + A AI + G + ++C
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 216 NWA 218
W
Sbjct: 282 YWG 284
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 211 PSNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFNSHESAAHAIV 267
Query: 113 SLNGRHLFGQPIKVNWA 129
S+NG + G +K W
Sbjct: 268 SVNGTTIEGHVVKCYWG 284
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 187 bits (476), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 163/281 (58%), Gaps = 29/281 (10%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E + +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVSQSSPNN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ FVR+S+H AA AI N T
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGT 272
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 29/183 (15%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSL 114
V+VG++ ++T ++ F+ G + ++++ YGF+ +F++ A AI +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 115 NGRHLFGQPIKVNWA----------YASGQRE---------DTSGHFNIFVGDLSPEVTD 155
G+ L G+ I+ NWA Y S ++ + + ++ G ++ +T+
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
+ FS + + RV D +G+ FV F + + A AI + G + ++C
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 216 NWA 218
W
Sbjct: 282 YWG 284
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
P+ C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 211 PNNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFSSHESAAHAIV 267
Query: 113 SLNGRHLFGQPIKVNWA 129
S+NG + G +K W
Sbjct: 268 SVNGTTIEGHVVKCYWG 284
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 4/170 (2%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGFIHYFDRRSAAMA 110
++ R +YVGN+ +TE +L++ F GP+ K++ + +K+ +Y F+ Y A +A
Sbjct: 72 TSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIA 131
Query: 111 ILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+ +LNG+ + +K+NWA+ S Q+ + FN+FVGDL+ V D TL F +PS
Sbjct: 132 LQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 190
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
VMWD +TG SRG+GFVSF +Q DAQ+A++ + G+ L R +R NWA K
Sbjct: 191 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
P+ TT Y+GN+ T+ DL F + G I + + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCI 393
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 154/285 (54%), Gaps = 19/285 (6%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
+++++G++ + E L FS G V K+IR ++ YGF+ + +A +
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 113 SLNGRHL--FGQPIKVNWA-YASGQ-REDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
S NG + QP ++NWA +++G+ R +T F+IFVGDL+ +VTD L F S YPS
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A+V+ D TG S+G+GFV F ++ + A+ ++ G + SR +R AT + +
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
+ SS A V L+ G + +G T +++ + + TT++VG L EVT +L + F+ G
Sbjct: 264 QYSSQA---VILSGGYASNGAATHGSQS-DGDSSNTTIFVGGLDSEVTDEELRQSFNQFG 319
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332
+ V++ KG GFV++S + A AIQ S + GKQ
Sbjct: 320 E--VVSVKIPAGKGCGFVQFSDRSSAQEAIQ----KLSGAIIGKQ 358
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 39/194 (20%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
S++VG++ + VT+ +L++ F+S P ++G K++ + YGF+ + D + A+
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 113 SLNGRHLFGQPIKVNWA---------------------YAS-------GQREDTSGHFNI 144
+NG + + +++ A YAS Q + S + I
Sbjct: 238 EMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Query: 145 FVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204
FVG L EVTD L F+ + ++ +G GFV F ++ AQ AI L+
Sbjct: 298 FVGGLDSEVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSDRSSAQEAIQKLS 351
Query: 205 GKWLGSRQIRCNWA 218
G +G + +R +W
Sbjct: 352 GAIIGKQAVRLSWG 365
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113
S+ +++VG + ++VT+ L++ F+ G V K+ GF+ + DR SA AI
Sbjct: 292 SSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI--PAGKGCGFVQFSDRSSAQEAIQK 349
Query: 114 LNGRHLFGQPIKVNWA 129
L+G + Q ++++W
Sbjct: 350 LSGAIIGKQAVRLSWG 365
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 141/271 (52%), Gaps = 11/271 (4%)
Query: 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAI 111
R++++G++ V E L FS TG + K+IR + YGFI + +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 112 LSLNGRHLFGQPI--KVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPS 167
+ NG + G + ++NWA + SGQ+ D +IFVGDL+P+VTD L F V Y S
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A+V+ D TGRS+G+GFV F + + A+ ++ G + +R +R + AT N
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK-NVGV 201
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
+Q K+V +T S+ PE++ TT+ V NL VT+ +L + F LG
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 318
+ V++ KG+G+V++ T A A+Q
Sbjct: 262 EVIY--VKIPATKGYGYVQFKTRPSAEEAVQ 290
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 58 SVYVGNIHTQVTEPLLQEVFS-STGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAIL 112
S++VG++ VT+ LLQE F V G K++ + YGF+ + + A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 113 SLNGRHLFGQPIKVNWAYASG-----QREDTSGHFNIFVGD---------LSPEVTDATL 158
+NG + +P++++ A Q+ T + + V ++P +D T
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVT- 235
Query: 159 FACFSVYPSCSDARVMWDQ--------------KTGRSRGFGFVSFRNQQDAQSAINDLT 204
C ++ + D V ++ K ++G+G+V F+ + A+ A+ +
Sbjct: 236 --CTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQ 293
Query: 205 GKWLGSRQIRCNWA 218
G+ +G + +R +W+
Sbjct: 294 GQVIGQQAVRISWS 307
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 30 HPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI 89
+P + + P+ + PP D TC ++ V N+ VTE L++ FS G V K+
Sbjct: 211 YPVTVPSAVAAPVQAYVAPPESD-VTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI- 268
Query: 90 RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134
YG++ + R SA A+ + G+ + Q ++++W+ GQ
Sbjct: 269 -PATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQ 312
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 149/279 (53%), Gaps = 17/279 (6%)
Query: 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAI 111
++++VG++ + E L FS TG V K+IR +S YGF+ + R +A +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166
Query: 112 LSLNGRHL--FGQPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFS-VY 165
+ +G + QP ++NWA +++G++ + ++FVGDLSP+VTD L FS Y
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRY 226
Query: 166 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGN 224
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + +RQ+R AT K A
Sbjct: 227 PSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIA 286
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
N+ + SS A V L G +G +++ + T++VG + P+V DL + F
Sbjct: 287 NQQQHSSQA---VILAGGHGSNGSMGYGSQS-DGESTNATIFVGGIDPDVIDEDLRQPFS 342
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
G + V++ KG GFV+++ A AI+ N T
Sbjct: 343 QFGE--VVSVKIPVGKGCGFVQFADRKSAEDAIESLNGT 379
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 42/196 (21%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
SV+VG++ VT+ LL E FS P V+ K++ + YGF+ + D + A+
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 113 SLNGRHLFGQPIKVNWA------------------------------YASGQREDTSGHF 142
+NG + + ++V A Y S Q + S +
Sbjct: 263 EMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGS-QSDGESTNA 321
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
IFVG + P+V D L FS + ++ +G GFV F +++ A+ AI
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP------VGKGCGFVQFADRKSAEDAIES 375
Query: 203 LTGKWLGSRQIRCNWA 218
L G +G +R +W
Sbjct: 376 LNGTVIGKNTVRLSWG 391
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113
ST +++VG I V + L++ FS G V K+ GF+ + DR+SA AI S
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI--PVGKGCGFVQFADRKSAEDAIES 375
Query: 114 LNGRHLFGQPIKVNWA 129
LNG + ++++W
Sbjct: 376 LNGTVIGKNTVRLSWG 391
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 149/281 (53%), Gaps = 26/281 (9%)
Query: 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAI 111
++++VG++ + E L FS T V K+IR ++ YGF+ + R +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 112 LSLNGRHLFG--QPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFS-VY 165
S +G + QP ++NWA +++G++ + +IFVGDL+P+V+DA L F+ Y
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 166 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGN 224
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + SRQ+R AT K A
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 225 NEDKQSSDAKSVV--ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S A ++ NGS DG E+ N +T++VG L +VT+ DL +
Sbjct: 298 YGQQNGSQALTLAGGHGGNGSMSDG-ESNN----------STIFVGGLDADVTEEDLMQP 346
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G + V++ KG GFV+++ A AI N T
Sbjct: 347 FSDFGE--VVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGT 385
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
S++VG++ V++ +L E F+ P V+G K++ + YGF+ + D + A+
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 113 SLNGRHLFGQPIKVNWAY-----ASGQREDT-------------------SGHFNIFVGD 148
+NG + ++V A A GQ+ + S + IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
L +VT+ L FS + ++ +G GFV F N+Q A+ AI +L G +
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNLNGTVI 387
Query: 209 GSRQIRCNWA 218
G +R +W
Sbjct: 388 GKNTVRLSWG 397
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 32/312 (10%)
Query: 21 ALLQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSST 80
A QQ S G +A P P+GN P+ RS+++G++ + E L F T
Sbjct: 54 AWAQQPSQQQYGAMATTNPNPSPTGN------PNEVRSLWIGDLQYWMDENYLSTCFYHT 107
Query: 81 GPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWA-YASG 133
G + K+IR ++ YGF+ + +A + + NG + Q ++NWA +G
Sbjct: 108 GELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAG 167
Query: 134 QREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192
+R D S IFVGDL+ +VTD L F SVY S A+V+ D+ TGRS+G+GFV F +
Sbjct: 168 ERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFAD 227
Query: 193 QQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTN 252
+ + A+ ++ G +R +R G N+ + K+ + N + G
Sbjct: 228 ESEQLRAMTEMNGVLCSTRPMRI-----GPAANKKPVGTPQKATYQ--NPQATQG----- 275
Query: 253 TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAE 312
E++P TT++VG L P V + L + F G V V++ K GFV++ T A
Sbjct: 276 ----ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV--HVKIVAGKRCGFVQFGTRAS 329
Query: 313 AALAIQMGNTTQ 324
A A+ N TQ
Sbjct: 330 AEQALSSLNGTQ 341
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSST-GPVEGCKL----IRKDKSSYGFIHYFDRRS 106
D S +++VG++ VT+ +LQE F S V G K+ I YGF+ + D
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 107 AAMAILSLNGRHLFGQPIKVNWAY----------------ASGQREDTSGHFNIFVGDLS 150
A+ +NG +P+++ A + Q E + IFVG L
Sbjct: 231 QLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLD 290
Query: 151 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
P V + L FS Y +++ ++ G FV F + A+ A++ L G LG
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIVAGKRCG------FVQFGTRASAEQALSSLNGTQLGG 344
Query: 211 RQIRCNWATKGAGNNEDK 228
+ IR +W + D+
Sbjct: 345 QSIRLSWGRSPSSKQTDQ 362
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 34/296 (11%)
Query: 43 PSGNLPPGFDPSTC---RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
P PP P+T R++++G++ + E L F+ TG + K+IR ++
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQP---IKVNWA-YASGQREDTSGHFNIFVGDLSP 151
YGFI + +A + + N + P ++NWA +SG + D S + IFVGDL+
Sbjct: 105 YGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAA 164
Query: 152 EVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
+VTD L F + YPS A+V+ D+ TGR++G+GFV F ++ + A+ ++ G +
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCST 224
Query: 211 RQIRCNWAT--KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
R +R A KG D S A V +N+P TTV+VG
Sbjct: 225 RPMRIGPAASKKGVTGQRDSYQSSAAGVTT------------------DNDPNNTTVFVG 266
Query: 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
L VT L F G I V++ K GFV++S + A A++M N Q
Sbjct: 267 GLDASVTDDHLKNVFSQYGE--IVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQ 320
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 31/202 (15%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLI----RKDKSSYGFIHYFDRRS 106
D S +++VG++ VT+ +L E F ++ P V+G K++ YGF+ + D
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYA----SGQRE------------DTSGHFNIFVGDLS 150
A+ +NG +P+++ A + +GQR+ + + +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 151 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
VTD L FS Y ++ ++ G FV F + A+ A+ L G LG
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQFSEKSCAEEALRMLNGVQLGG 323
Query: 211 RQIRCNWATKGAGNNEDKQSSD 232
+R +W + +KQS D
Sbjct: 324 TTVRLSWGR----SPSNKQSGD 341
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 139/277 (50%), Gaps = 28/277 (10%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAIL 112
RS+++G++ + E L VF TG K+IR ++ Y GFI + + +A +
Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139
Query: 113 SLNGRHLFG--QPIKVNWA-YASGQREDTSG-HFNIFVGDLSPEVTDATLFACF-SVYPS 167
+ NG + Q ++NWA +G+R G +FVGDL+P+VTD L F +VY S
Sbjct: 140 TYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSS 199
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ SR +R G N+
Sbjct: 200 VKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRT-----GPAANKK 254
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
+ S + T + E++P TT++VG + VT+ DL F G
Sbjct: 255 PLTMQPASY------------QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFG 302
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
V V++ K GFV+Y+ A A A+ + N TQ
Sbjct: 303 ELV--HVKIPAGKRCGFVQYANRACAEQALSVLNGTQ 337
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 32/183 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAI 111
+V+VG++ VT+ +L E F + V+G K++ D+++ YGF+ + D A+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVV-NDRTTGRSKGYGFVRFADESEQIRAM 232
Query: 112 LSLNGRHLFGQPIKV-----------------NWAYASGQREDTSGHFNIFVGDLSPEVT 154
+NG++ +P++ N SG+ + T + IFVG + VT
Sbjct: 233 TEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPT--NTTIFVGAVDQSVT 290
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214
+ L + F + ++ ++ G FV + N+ A+ A++ L G LG + IR
Sbjct: 291 EDDLKSVFGQFGELVHVKIPAGKRCG------FVQYANRACAEQALSVLNGTQLGGQSIR 344
Query: 215 CNW 217
+W
Sbjct: 345 LSW 347
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111
DP T +++VG + VTE L+ VF G + K+ + GF+ Y +R A A+
Sbjct: 274 DP-TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC--GFVQYANRACAEQAL 330
Query: 112 LSLNGRHLFGQPIKVNWAYASGQRE 136
LNG L GQ I+++W + ++
Sbjct: 331 SVLNGTQLGGQSIRLSWGRSPSNKQ 355
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 140/290 (48%), Gaps = 37/290 (12%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKDKSS----YGFIHYFDRRSAAMA 110
++++VG++H + E L F+S E K+IR + YGF+ + A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 111 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-V 164
+ NG + QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP---- 276
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTN--TEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
TNG + G N PE + TT++VG L VT DL +
Sbjct: 277 -------------RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQP 323
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332
F+ G I V++ KG GFV++ A A++ N T + GKQ
Sbjct: 324 FNEFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT----VIGKQ 367
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 32/197 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
S++VG++ V++ LL E FS P V+ K++ + YGF+ + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 113 SLNG--------RHLFGQPIKVNWAYASG---------QREDTSGHFNIFVGDLSPEVTD 155
+NG R P K N G + E + IFVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L F+ + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 216 NWATKGAGNNEDKQSSD 232
+W A +KQ D
Sbjct: 372 SWGRNPA----NKQPRD 384
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117
+++VG + + VT+ L++ F+ G + K+ GF+ + +R +A A+ LNG
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI--PVGKGCGFVQFVNRPNAEEALEKLNGT 362
Query: 118 HLFGQPIKVNWAYASGQREDTSGHFNIFV 146
+ Q ++++W ++ + N +V
Sbjct: 363 VIGKQTVRLSWGRNPANKQPRDKYGNQWV 391
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 28/281 (9%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAM 109
S +S+++G++ + E + VF+ +G K+IR YGFI + A
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 110 AILSLNGRHLFG--QPIKVNWAYASG--QREDTSG-HFNIFVGDLSPEVTDATLFACF-S 163
+ + NG + Q ++NWA A +R T G IFVGDL+PEVTD L F +
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKN 176
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223
VY S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ +R +R A
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAAN--- 233
Query: 224 NNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283
K+ + + ++ T A +N+P TT++VG L VT +L F
Sbjct: 234 ----------KNALPMQPAMYQN---TQGANAGDNDPNNTTIFVGGLDANVTDDELKSIF 280
Query: 284 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
G + V++ K GFV+Y+ A A A+ + N TQ
Sbjct: 281 GQFGE--LLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ 319
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAI 111
+++VG++ +VT+ +L + F + G V+G K++ D+++ YGF+ + D A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVL-DRTTGRSKGYGFVRFADENEQMRAM 213
Query: 112 LSLNGRHLFGQPIKVNWAY----------------ASGQREDTSGHFNIFVGDLSPEVTD 155
+NG++ +P+++ A + ++ + IFVG L VTD
Sbjct: 214 TEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L + F + ++ ++ G FV + N+ A+ A++ L G LG + IR
Sbjct: 274 DELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAEHALSVLNGTQLGGQSIRL 327
Query: 216 NWATKGAGNNEDKQSSDAK 234
+W G + +KQS A+
Sbjct: 328 SW-----GRSPNKQSDQAQ 341
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111
DP+ +++VG + VT+ L+ +F G + K+ + GF+ Y ++ SA A+
Sbjct: 256 DPNNT-TIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC--GFVQYANKASAEHAL 312
Query: 112 LSLNGRHLFGQPIKVNWAYASGQRED 137
LNG L GQ I+++W + ++ D
Sbjct: 313 SVLNGTQLGGQSIRLSWGRSPNKQSD 338
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 141/279 (50%), Gaps = 36/279 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILS 113
++++G + VTE +Q+V+++ G KLIR + Y F+ + A+ A +S
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MS 152
Query: 114 LNGR------HLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF-S 163
+N + HLF K+NWA G RE + + ++IFVGDLSP V + +++ F S
Sbjct: 153 MNNKPIPGTNHLF----KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFAS 208
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223
Y SC A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G R IR AT
Sbjct: 209 RYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP--- 265
Query: 224 NNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY-----TTVYVGNLAPEVTQLD 278
K + S V + S A + PQ+ +TV+VG L+ V++ +
Sbjct: 266 ----KSKAHVFSPVNVVPVSM---PPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEE 318
Query: 279 LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
L F + G I V++ KG GFV++ A +AI
Sbjct: 319 LKYLFQNFGE--IVYVKIPPGKGCGFVQFVNRQSAEIAI 355
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 37/199 (18%)
Query: 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189
Y S + E+ +++G+L P VT+A + ++ +++ ++ TG + G+ FV
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 190 FRNQQDAQSAINDLTGKWLGSRQI-RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGK 248
F + +A SA++ G+ + + NWA+ G +
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWASGGG------------------------LR 176
Query: 249 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFG 303
E + ++A E +++VG+L+P V + D++ F S A ++ + + +G+G
Sbjct: 177 EKSISKASE-----YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYG 231
Query: 304 FVRYSTHAE--AALAIQMG 320
FVR++ + +ALA G
Sbjct: 232 FVRFTDENDQKSALAEMQG 250
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 40/193 (20%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
S++VG++ V E + +F+S + K++ +++ YGF+ + D A+
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 113 SLNGRHLFGQPIKVNWA------------------------YASGQR----EDTSGHFNI 144
+ G+ +PI+V A Y++ Q DT+ +
Sbjct: 247 EMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANS-TV 305
Query: 145 FVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204
FVG LS V++ L F + +++ K +G GFV F N+Q A+ AIN L
Sbjct: 306 FVGGLSKFVSEEELKYLFQNF-----GEIVY-VKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 205 GKWLGSRQIRCNW 217
G LG+ +IR +W
Sbjct: 360 GYPLGNSRIRLSW 372
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAA 108
P F + +V+VG + V+E L+ +F + G + K+ GF+ + +R+SA
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI--PPGKGCGFVQFVNRQSAE 352
Query: 109 MAILSLNGRHLFGQPIKVNW 128
+AI L G L I+++W
Sbjct: 353 IAINQLQGYPLGNSRIRLSW 372
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 138/288 (47%), Gaps = 33/288 (11%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKDKSS----YGFIHYFDRRSAAMA 110
++++VG++ + E L F+S E K+IR + YGF+ + A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 111 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-V 164
+ NG + QP ++NWA +++G++ E+ +IFVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT N
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
+Q G T +E N TT++VG L VT DL + F
Sbjct: 283 GYQQQ------------GGYMPSGAFTRSEGDTIN---TTIFVGGLDSSVTDEDLKQPFS 327
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332
G I V++ KG GFV++ A A++ N T + GKQ
Sbjct: 328 EFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT----VIGKQ 369
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
S++VG++ V++ LL E FS P V+ K++ + YGF+ + D A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 113 SLNGRHLFGQPIKVNWAY-----------------ASGQREDTSGHFNIFVGDLSPEVTD 155
+NG + +++ A A + E + + IFVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L FS + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 320 EDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Query: 216 NWATKGAGNNEDKQSSD 232
+W N +KQ D
Sbjct: 374 SWGR----NPANKQPRD 386
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 42 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHY 101
+PSG + +++VG + + VT+ L++ FS G + K+ GF+ +
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI--PVGKGCGFVQF 348
Query: 102 FDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFV 146
+R +A A+ LNG + Q ++++W ++ + N +V
Sbjct: 349 VNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWV 393
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 145/291 (49%), Gaps = 25/291 (8%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS------YGFIHYFDRRSAAMAI 111
++++G++ + +Q++++S K++R SS Y F+ + +A A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 112 LSLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVGDLSPEVTDATLFACF-SV 164
+ N + G K+NWA G + + F+IFVGDL P D+ LF F S+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPSC+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A+
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP---- 261
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
+ + S A S + + S+ + + N + +P TTV+VG LA +++ DL F
Sbjct: 262 -KSRASIAADSALGIVPTSTSNRQP--NQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQ 318
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335
G I +++ KG GFV+YS + A AI NT Q + + +++
Sbjct: 319 PFGR--ILNIKIPFGKGCGFVQYSEKSAAEKAI---NTMQGALVGTSHIRL 364
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 36/190 (18%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
S++VG++ + L F S P I D + YGF+ + + A++
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 113 SLNGRHLFGQPIKVNWAY----ASGQREDTSG---------------------HFNIFVG 147
+ G G+P++++ A AS + G + +FVG
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVG 302
Query: 148 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207
L+ +++ L CF + R++ + K +G GFV + + A+ AIN + G
Sbjct: 303 GLASNLSEKDLQVCFQPF-----GRIL-NIKIPFGKGCGFVQYSEKSAAEKAINTMQGAL 356
Query: 208 LGSRQIRCNW 217
+G+ IR W
Sbjct: 357 VGTSHIRLAW 366
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 121/269 (44%), Gaps = 38/269 (14%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG + +TE LL +VFS GP+ ++ R K Y +++Y D + AI
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
LN + G+P ++ W+ R+ SG NIF+ +L P + + L FS + +
Sbjct: 111 LNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+ G SRGFGFV F+ + DA+ AI + G + ++ D
Sbjct: 169 VALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVP---------KKD 218
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AG 289
S +E EA N +T +YV N+ E T + + F G +
Sbjct: 219 RISKLE---------------EAKAN---FTNIYVKNIDVETTDEEFEQLFSQYGEIVSA 260
Query: 290 VIEEVRVQRDKGFGFVRYSTHAEAALAIQ 318
+E+ + KGFGFV + H AA A++
Sbjct: 261 ALEKDAEGKPKGFGFVNFVDHNAAAKAVE 289
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 35/278 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
++++ N+H + L E FS+ G V CK+ + + +GF+H+ + A AI ++
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG + G + V R E+ +F NI+V ++ E TD FS Y
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-K 228
A + D + G+ +GFGFV+F + A A+ +L GK S+ + A K E+ K
Sbjct: 259 SAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELK 317
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
+ + + +L Q +++ NL + L F G
Sbjct: 318 KQYEQYRLEKLAKF------------------QGVNLFIKNLDDSIDDEKLKEEFAPYG- 358
Query: 289 GVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
I RV RD KGFGFV +S+ EA A+ N
Sbjct: 359 -TITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 42/270 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
S+YVG + V+E LL ++FS G V ++ R ++ Y ++++ D + AI
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ + G NI++ +L P + + +L FS + +
Sbjct: 99 LNYTLIKGKPCRIMWS----QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILS 154
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D+ G SRGFGFV F N+ DA+ AI + G + +++ + +D+QS
Sbjct: 155 CKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHV----SKKDRQS 209
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG--- 287
+ E ++T VYV N+ E +Q + F G
Sbjct: 210 -----------------------KLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKIT 246
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
+ V+E+ + +GFGFV + HA AA A+
Sbjct: 247 SAVLEKDSEGKLRGFGFVNFEDHAAAAKAV 276
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 39/288 (13%)
Query: 52 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDR 104
DPS + ++Y+ N+H + L E FS+ G + CK+ + +GF+H+ +
Sbjct: 117 DPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENE 176
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLF 159
A AI +++G + Q + V + R E+ F N++V ++ E +
Sbjct: 177 SDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFE 236
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F Y + A V+ G+ RGFGFV+F + A A+++L +++ A
Sbjct: 237 ELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQ 295
Query: 220 KGAGN-NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278
K E K+ +A + +L Q ++V NL +
Sbjct: 296 KKYERLQELKKQYEAARLEKLAKY------------------QGVNLFVKNLDDSIDDEK 337
Query: 279 LHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
L F G I +V RD +GFGFV +ST EA AI N
Sbjct: 338 LKEEFAPF--GTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKN 383
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFG 303
TT +E P+ ++YVG L P V++ L+ F +G+ + +RV RD G+
Sbjct: 25 TTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGS--VSSIRVCRDAITNTSLGYA 82
Query: 304 FVRYSTHAEAALAIQMGNTT 323
+V + H AI+ N T
Sbjct: 83 YVNFHDHEAGPKAIEQLNYT 102
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 43/279 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + + +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+ SRGFGFV F + AQ AIN + G L R++ G+ + ++ +
Sbjct: 130 VACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV-------FVGHFKSRRERE 180
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 292
A EL + E +T +YV NL +V + L F G +
Sbjct: 181 A----ELGARALE----------------FTNIYVKNLPVDVDEQGLQDLFSQFGK--ML 218
Query: 293 EVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSS 326
V+V RD + FGFV + H EA A+ N + S
Sbjct: 219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVS 257
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 33/285 (11%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + CK+ + S +GF+H+ +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G NI+V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + +VM D +G SR FGFV+F ++AQ A+ + GK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Query: 222 AGN-NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
NE K+ + L Q +YV NL + L
Sbjct: 270 VERQNELKRRFEQMKQDRL------------------RRYQGVNLYVKNLDDSIDDDKLR 311
Query: 281 RHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGN 321
+ F GVI +V + KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPY--GVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
++YV N+ V E LQ++FS G + K++R + +GF+++ A A++ +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLF 159
NG+ + G+ + A +R++ N++V +L + D L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + A+VM + G S+GFGFV F + ++A A+ ++ G+ +G++ + A
Sbjct: 312 KEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVGTKPLYVALAQRKEERK 375
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ + YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDA 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE 245
A+ ++ N S+
Sbjct: 190 AAERLLAAQNPLSQ 203
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 48/217 (22%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A+G + + ++VG L +V++ L+ F + + D+ TG+ +G+GFV F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
+++DA AI + L + IR N K + +N++ L G++
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------ 101
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGF 304
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F
Sbjct: 102 --------------IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAF 146
Query: 305 VRYSTHAEAALAIQMGN-------TTQSSYLFGKQMK 334
+ +++ + AI+ N SY F K K
Sbjct: 147 INFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ + YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDA 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE 245
A+ ++ N S+
Sbjct: 190 AAERLLAAQNPLSQ 203
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 48/217 (22%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A+G + + ++VG L +V++ L+ F + + D+ TG+ +G+GFV F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
+++DA AI + L + IR N K + +N++ L G++
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------ 101
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGF 304
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F
Sbjct: 102 --------------IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAF 146
Query: 305 VRYSTHAEAALAIQMGN-------TTQSSYLFGKQMK 334
+ +++ + AI+ N SY F K K
Sbjct: 147 INFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 47/281 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+PI++ W+ QR+ + SG N+F+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPIRIMWS----QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+ FV F Q+ A AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N EV L F G +
Sbjct: 179 REA----ELGAKAKE----------------FTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSS 326
V+V RD KGFGFV Y H +A A++ N + S
Sbjct: 219 --SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + EV D +L
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQR-------------EDTSGH--FNIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R E S + N+++ +L + D L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ + A
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++Y+ N+ + + L++ FS G + K++ +D S +GF+ + A A+ +N
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQREDTSGHF 142
GR + +P+ V A ++E+ H
Sbjct: 355 GRIVGSKPLYVALAQ---RKEERKAHL 378
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ + YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDA 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE 245
A+ ++ N S+
Sbjct: 190 AAERLLAAQNPLSQ 203
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 48/217 (22%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A+G + + ++VG L +V++ L+ F + + D+ TG+ +G+GFV F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
+++DA AI + L + IR N K + +N++ L G++
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------ 101
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGF 304
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F
Sbjct: 102 --------------IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAF 146
Query: 305 VRYSTHAEAALAIQMGN-------TTQSSYLFGKQMK 334
+ +++ + AI+ N SY F K K
Sbjct: 147 INFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 42/281 (14%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAM 109
++ S+YVG++ V+E L ++FS G V ++ R K Y ++++ D +
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 110 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 166
AI LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+
Sbjct: 95 AIEQLNYTPIKGRLCRIMWS----QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG 150
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
+++ D+ G+S+GFGFV F + A+ AI+ L G L ++I
Sbjct: 151 DILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV----------- 198
Query: 227 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 286
+ ++ +++ E YT +YV N+ E T F
Sbjct: 199 ----------------APHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 287 GAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQ 324
G V + D KGFGFV Y H +A A++ N ++
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSE 283
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 123/291 (42%), Gaps = 45/291 (15%)
Query: 52 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDR 104
DPS + ++++ N+H + L + FS G + K+ + +GF+H+ +
Sbjct: 117 DPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEE 176
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLF 159
+A AI +LNG L GQ I V + +R E+T H+ N++V +++ E TD
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 236
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F+ + A + D G+ +GFGFV++ +DA A+ L L ++ A
Sbjct: 237 ELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 220 KGAGNNED----KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVT 275
K NE K+ +A + ++ Q ++V NL V
Sbjct: 296 K---KNERMHVLKKQYEAYRLEKMAKY------------------QGVNLFVKNLDDSVD 334
Query: 276 QLDLHRHFHSLGAGVIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGN 321
L F G I +V R KGFGFV +ST EA AI N
Sbjct: 335 DEKLEEEFAPY--GTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 234 KSVVELTNGSSEDGKE--TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291
K+ +L N + +D ++ T +E+ ++YVG+L P V++ L+ F +G+ +
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGS--V 64
Query: 292 EEVRVQRDK------GFGFVRYSTHAEAALAIQMGNTT 323
+RV RD G+ +V ++ H AI+ N T
Sbjct: 65 SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYT 102
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 42/277 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++ V+E L ++FS G V ++ R K Y ++++ D +A AI
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+ +
Sbjct: 96 LNFTPIKGKLCRIMWS----QRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
++V D+ TG+S+GFG+V F + A AI+ L G L ++I G + K+
Sbjct: 152 SKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV-------GPHLSKKE 203
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG--- 287
++K E +T VY+ N+ E T + G
Sbjct: 204 RESK--------------------FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTD 243
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
+ V+E +KGFGFV + H +A ++ N T+
Sbjct: 244 SVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTE 280
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 35/286 (12%)
Query: 52 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDR 104
DPS + ++++ N+H + L + FS G + K+ + +G++H+ +
Sbjct: 114 DPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEED 173
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLF 159
SA+ AI +LNG L GQ I V + +RE + +F N+++ +++ E TD
Sbjct: 174 ESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFE 233
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
+ + +D+ V+ G ++GFGFV+F N +DA + +L + + N A
Sbjct: 234 ELVAKF-GKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQ 292
Query: 220 KGAGNNED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278
K ++ K+ +A + ++ Q +++ NL +
Sbjct: 293 KKYERQQELKKQYEATRMEKMAKY------------------QGINLFIKNLDDSIDDKK 334
Query: 279 LHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
L F G +V + KGFGFV +ST EA AI N
Sbjct: 335 LEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKN 380
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K+ +L N S +D +E TN E ++ ++YVG+L P V++ L+ F +GA +
Sbjct: 7 KTAEQLENLSLQDKQEGTNEEN-QSETVSASLYVGDLDPSVSEAHLYDIFSPIGA--VSS 63
Query: 294 VRVQRDK------GFGFVRYSTHAEAALAIQMGNTT 323
+RV RD G+ +V ++ H A AI+ N T
Sbjct: 64 IRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFT 99
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 124/274 (45%), Gaps = 43/274 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQRED---TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+PI++ W+ QR+ SG N+F+ +L + + L+ FS + +
Sbjct: 72 MNFEVIKGRPIRIMWS----QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELE 182
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
AK V+E TN VY+ N ++ L F + G +
Sbjct: 183 YGAK-VMEFTN-----------------------VYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 291 IEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
+V + R +GFGFV Y H EA A+ N
Sbjct: 219 SVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 129/278 (46%), Gaps = 27/278 (9%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D TGRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ D +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 31/280 (11%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D +GRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++QS EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQS-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 317
F L G I +V + KGFGFV +S+ EA A+
Sbjct: 313 EF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 43/274 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+Y+G++H VTE +L E FS GP+ ++ R + SY +I++ A A+ +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQRED---TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+PI++ W+ QR+ SG N+F+ +L + + L+ FS + +
Sbjct: 72 MNFEVIKGRPIRIMWS----QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ SRG+GFV F + A AI + G L R++ + E +
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELE 182
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
AK V+E TN VY+ N ++ L F + G +
Sbjct: 183 YGAK-VMEFTN-----------------------VYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 291 IEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
+V + R +GFGFV Y H EA A+ N
Sbjct: 219 SVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ D +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ F G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 127/270 (47%), Gaps = 42/270 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++ VT+ L + F G V + L+ + YG++++ + + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 114 LNGRHLFGQPIKVNWAY--ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
LN L+G+PI+V +++ S +R SG NIF+ +L + L FS + +
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
+V D +G+S+G+GFV + N++ AQ AI L G L +Q+ + +Q
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR-------RQER 205
Query: 232 DAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---A 288
D+ + N ++T VYV NLA T DL F G +
Sbjct: 206 DSTA----------------------NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 318
V+ + + KGFGFV + +AA A++
Sbjct: 244 AVVMKDGEGKSKGFGFVNFENADDAARAVE 273
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 126/282 (44%), Gaps = 37/282 (13%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFD 103
DPS RS +++ N+ + L + FSS G + CK + D S YGF+ Y +
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKGYGFVQYAN 173
Query: 104 RRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF---NIFVGDLSPEVTDATLFA 160
SA AI LNG L + + V +R+ T+ N++V +L+ TD L
Sbjct: 174 EESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y + A VM D + G+S+GFGFV+F N DA A+ L G ++ W
Sbjct: 234 AFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYVG 288
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
A ++++ EL ++ KE + Q + +YV NL P ++ L
Sbjct: 289 RAQKKSERET-------ELRVRYEQNLKEAADKF------QSSNLYVKNLDPSISDEKLK 335
Query: 281 RHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
F G + +V RD KG GFV ++T EA A+
Sbjct: 336 EIFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 46 NLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYF 102
NL D ++YV N+ +++ L+E+FS G V K++R + GF+ +
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF 162
A A+ L+G+ + +P+ V A ++ED + P ++
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQ---RKEDRRVRLQAQFSQVRPVAMQPSVGPRM 423
Query: 163 SVYP 166
VYP
Sbjct: 424 PVYP 427
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALA 316
T++YVG+L VT L F +G V VRV RD G+G+V ++ +AA A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVT--VRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 317 IQMGNTTQSSYLFGKQMKV 335
IQ N L+GK ++V
Sbjct: 94 IQELNYIP---LYGKPIRV 109
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 151/324 (46%), Gaps = 60/324 (18%)
Query: 45 GNLPPGFDPSTCRSVYVG------NIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGF 98
G+L P +D +T R ++ N+ L SS GP K+ Y F
Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCF 110
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQP---IKVNWAYASGQRE-------DTSGHFNIFVGD 148
+ + AA A+L NG + P +K+NWA +S + + +IFVGD
Sbjct: 111 VDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGD 169
Query: 149 LSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207
L+P VT++ LF F + Y S S A+++ DQ TG S+G+GFV F N + Q A++++ G +
Sbjct: 170 LAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229
Query: 208 LGSRQIRCNWATKG-----AGNNEDKQSSD------------AKSVVELTNGSSEDGKET 250
L R I+ T G +GNN+ +SS +K L+NG++ G +
Sbjct: 230 LNGRAIKVG-PTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKR 288
Query: 251 TNT--------EAPENN----PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298
+ + P N P TTV++G L+ VT+ +L +F G I V++
Sbjct: 289 NHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYVKIPV 346
Query: 299 DKGFGFVRYSTH--AEAALAIQMG 320
K GFV+Y AEAA+A G
Sbjct: 347 GKCCGFVQYVDRLSAEAAIAGMQG 370
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111
DP+ +V++G + + VTE L+ F G + K+ GF+ Y DR SA AI
Sbjct: 309 DPNNT-TVFIGGLSSLVTEDELRAYFQPFGTIVYVKI--PVGKCCGFVQYVDRLSAEAAI 365
Query: 112 LSLNGRHLFGQPIKVNWAYASGQ 134
+ G + ++++W ++ Q
Sbjct: 366 AGMQGFPIANSRVRLSWGRSAKQ 388
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 50/290 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335
V+V D KGFGFV + H +A A+ N + L GKQ+ V
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYV 263
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 50/290 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335
V+V D KGFGFV + H +A A+ N + L GKQ+ V
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYV 263
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 35/270 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKSSYGFIHYFDRRSAAMAILSL 114
S+YVG++ V E L ++F+ PV C+ + Y ++++ + A+ A+ SL
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174
N + +PI++ + SG N+F+ +L + + L+ FS + + +V
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 178
Query: 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAK 234
D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + +D+ S++
Sbjct: 179 MDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARSESG 233
Query: 235 SVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AGVI 291
+V P +T VYV NL E+T +L + F G + V+
Sbjct: 234 AV-----------------------PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVV 270
Query: 292 EEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
+ + + FGFV + + AA+A++ N
Sbjct: 271 MKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 121/288 (42%), Gaps = 39/288 (13%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDR 104
DPST S V++ N+ + L E FSS G + CK+ + YGF+ +
Sbjct: 137 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKE 196
Query: 105 RSAAMAILSLNGRHLFGQPIKV-NWAYASGQREDTSGHF----NIFVGDLSPEVTDATLF 159
+A AI LNG L + + V ++ + SG N++V +L E+TD L
Sbjct: 197 ETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELK 256
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F Y S A VM DQ +G SR FGFV+F + + A A+ + G LG + A
Sbjct: 257 KTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 315
Query: 220 KGAGNNED---KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276
K + E+ K + S E GS+ +Y+ NL V
Sbjct: 316 KKSDREEELRRKFEQERISRFEKLQGSN--------------------LYLKNLDDSVND 355
Query: 277 LDLHRHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGN 321
L F G +V + +GFGFV YS EA LA++ N
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 21/182 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILS 113
+VYV N+ ++T+ L++ F G + ++ KD+S S+GF+++ +AA+A+
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 298
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---------SGHF------NIFVGDLSPEVTDATL 158
+NG L + V A RE+ F N+++ +L V D L
Sbjct: 299 MNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 358
Query: 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
FS Y + + +VM + + G SRGFGFV++ N ++A A+ ++ GK +G + + A
Sbjct: 359 KEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 219 TK 220
+
Sbjct: 418 QR 419
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
++Y+ N+ V + L+E+FS G V CK++ + +GF+ Y + A +A+ +
Sbjct: 343 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 402
Query: 115 NGRHLFGQPIKVNWAYASGQRE 136
NG+ + +P+ V A +R+
Sbjct: 403 NGKMIGRKPLYVALAQRKEERQ 424
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 43/270 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+Y+G++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQRED---TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+PI++ W+ QR+ SG N+F+ +L + + L+ FS +
Sbjct: 72 MNFEVIKGRPIRIMWS----QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 128 CKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELE 182
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
AK V+E TN VY+ N ++ L F + G +
Sbjct: 183 YGAK-VMEFTN-----------------------VYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query: 291 IEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
+V + R +GFGFV Y H EA A+
Sbjct: 219 SVKVMMDNSGRSRGFGFVNYGNHEEAQKAV 248
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 27/278 (9%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D +GRSRGFGFV++ N ++AQ A+ ++ GK + R + A K
Sbjct: 211 FSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ + +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + + +VM + G S+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 50/290 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H TE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335
V+V D KGFGFV + H +A A+ N + L GKQ+ V
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYV 263
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 50/290 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335
V+V D KGFGFV + H +A A+ N + L GKQ+ V
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYV 263
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 50/290 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335
V+V D KGFGFV + H +A A+ N + L GKQ+ V
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYV 263
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 39/272 (14%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR---KDKSSYGFIHYFDRRSAAMAILSL 114
S+Y G++ +VTE L ++F V ++ R + Y +I++ + A A+ +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174
N LF +PI++ + SG NIF+ +L + + LF FS + + +V
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAK 234
D TGRS+G+GFV F ++ AQ+AI+ L G + +Q+ + D
Sbjct: 169 MDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD------- 220
Query: 235 SVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294
E T T P++T VYV NL E+ + +L + F GVI
Sbjct: 221 --------------ENTPT------PRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSA 258
Query: 295 RVQRDKG-----FGFVRYSTHAEAALAIQMGN 321
V RD+ FGFV + AA A++ N
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 114/285 (40%), Gaps = 33/285 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDR 104
DPST S +++ N+ + L E FSS G + CK+ + YGF+ +
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186
Query: 105 RSAAMAILSLNGRHLFGQPIKV-----NWAYASGQREDTSGHFNIFVGDLSPEVTDATLF 159
SA AI LNG + + + V A + T N++V +L E+ + L
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + S A VM DQ +G SR FGFV+F + A SA+ + G LG + A
Sbjct: 247 KTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
K + E+ + + + S Q +Y+ NL V L
Sbjct: 306 KKSEREEELRRKFEQERINRFEKS-----------------QGANLYLKNLDDSVDDEKL 348
Query: 280 HRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
F G +V + +GFGFV YS EA A+ N
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 23/191 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSL 114
+VYV N+ ++ E L++ F G + ++R + +GF+++ +AA A+ +
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 115 NGRHLFGQPIKVNWAYASGQRED---------------TSGHFNIFVGDLSPEVTDATLF 159
NG L + V A +RE+ S N+++ +L V D L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + + ++VM + + G SRGFGFV++ N ++A A++++ GK +G + + A
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 220 KGAGNNEDKQS 230
+ ED+++
Sbjct: 409 R----KEDRRA 415
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSA 107
F+ S ++Y+ N+ V + L+E+FS G V K++ + +GF+ Y + A
Sbjct: 326 FEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEA 385
Query: 108 AMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF 142
A+ +NG+ + +P+ + A ++ED H
Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQ---RKEDRRAHL 417
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 47/276 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE LL FS+ GPV ++ R + Y ++++ A A+ +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 114 LNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+ I++ W+ QR+ SG N+F+ +L + + TL+ FS +
Sbjct: 71 MNFDIIKGKSIRLMWS----QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
++VM D + S+G+ FV F+NQ A AI ++ GK L C N +D+++
Sbjct: 127 SKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKG----CKVFVGRFKNRKDREA 180
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
EL + +SE +T VY+ N ++ L F G +
Sbjct: 181 -------ELRSKASE----------------FTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
V+V D KGFGFV + +H A A++ N
Sbjct: 218 --SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 31/271 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
+V++ N+ + L E FS+ G + K++ D+ S Y F+H+ ++ +A AI +N
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 158
Query: 116 GRHLFGQPIKVNWAYASGQRE-----DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
G+ L G + V RE S N+++ + ++ D L FS Y
Sbjct: 159 GKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS 218
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+VM D +G+S+GFGFVSF + + A+ A+ ++ G+ + + I A K ++
Sbjct: 219 VKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV-----ERQ 272
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
++ K + E G Q +Y+ NL + L F S G+
Sbjct: 273 AELKQMFEQLKRERIRG------------CQGVKLYIKNLDDTIDDEKLRNEFSSFGS-- 318
Query: 291 IEEVRVQRD----KGFGFVRYSTHAEAALAI 317
I V+V ++ KGFG + +S+ +A A+
Sbjct: 319 ISRVKVMQEEGQSKGFGLICFSSPEDATKAM 349
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
+VY+ N + + L++VFS G K++ D S +GF+ + +A A+
Sbjct: 191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM-TDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 114 LNGRHLFGQPIKVNWA-------------YASGQREDTSG--HFNIFVGDLSPEVTDATL 158
+NGR + GQ I V A + +RE G +++ +L + D L
Sbjct: 250 MNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKL 309
Query: 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
FS + S S +VM Q+ G+S+GFG + F + +DA A+ ++ G+ LGS+ + A
Sbjct: 310 RNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Query: 219 TK 220
+
Sbjct: 368 QR 369
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 129/279 (46%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y + +VM D G+SRGFGFVSF +DAQ A++D+ GK L + I A K
Sbjct: 210 WFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 47/272 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI+ + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F GA +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKEWFGQYGAAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
V+V D +GFGFV + H +A A+
Sbjct: 219 --SVKVMTDDHGKSRGFGFVSFERHEDAQKAV 248
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E F G K++ D +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F+ + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ F+ G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 46/279 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG ++ V E L E+FS G V ++ R K Y +++Y AI
Sbjct: 68 SLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEE 127
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ + SG NIF+ +L P + + L FS +
Sbjct: 128 LNYTPVEGRPCRIMWS----QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILS 183
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D G+S+ FGFV + ++ AQ+AI + G L R++ G + K+
Sbjct: 184 VKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV-------GKHVSKKD 235
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
++K E YT +YV N+ T+ + F G
Sbjct: 236 RESK--------------------LEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-- 273
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQ 324
I + +++D KGFGFV + H AA A++ N +
Sbjct: 274 ITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKE 312
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 122/282 (43%), Gaps = 35/282 (12%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDR 104
DPS RS +++ N+H + L + FS+ G + K+ D +GF+HY
Sbjct: 146 DPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETE 205
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLF 159
+A AI S+NG L + + V + RE + + NI+V ++ T+
Sbjct: 206 EAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFE 265
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F+ + + + D + G+S+GFGFV+F + A A+ +L K + ++I A
Sbjct: 266 ELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Query: 220 KGAGNNED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278
K E+ K+ +A + +L+ Q ++V NL ++
Sbjct: 325 KKRERTEELKKQYEAVRLEKLSKY------------------QGVNLFVKNLDEQIDSEK 366
Query: 279 LHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
L F G +V V + KGFGFV +ST EA AI
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAI 408
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
++YV NI TE +E+F+ G + L + + +GF+++ + +AA A+ L
Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEEL 308
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATLF 159
N + + GQ I V A Y + + E S + N+FV +L ++ L
Sbjct: 309 NDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLE 368
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + + + ++VM D G+S+GFGFV F ++A AI ++ + + + + A
Sbjct: 369 EEFKPFGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQ 427
Query: 220 K 220
+
Sbjct: 428 R 428
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S ++V N+ + L + S+ G + C ++ + S YGF+H+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L G+ + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ ++ E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRTF--------EQMKQDRITRY-----QVVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 54/301 (17%)
Query: 51 FDPST----CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYF 102
+PST S+YVG++H VTE +L E FS GP+ + LI S+Y ++++
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLF 159
+ A A+ ++N + G+P+++ W+ QR+ + SG NIFV +L + + L+
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
S + + V+ D+ S+G+GFV F + A+ AI + G L R++
Sbjct: 117 DTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV---- 170
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
G + ++ +A EL + E + VY+ N ++ L
Sbjct: 171 ---GQFKSRKEREA----ELGARAKE----------------FPNVYIKNFGEDMDDERL 207
Query: 280 HRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334
F G + V+V D KGFGFV + H +A A+ N + L GKQ+
Sbjct: 208 KDLFGKFGPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIY 262
Query: 335 V 335
V
Sbjct: 263 V 263
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 47/276 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGRPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI+ + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
V+V D KGFGFV + H +A A+ N
Sbjct: 219 --SVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 31/279 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y +VM D G+S+GFGFVSF +DAQ A++++ GK + + + A K
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ D +GF+ + A A+ +
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ D + N++V +L + D L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ F G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 46/272 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ +G N+F+ +L + + L F+ + +
Sbjct: 112 LNYTLIKGKPCRIMWS----QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D+ G S+G+GFV + + A +AI + G L +++ + +D+QS
Sbjct: 168 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI----SKKDRQS 222
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+ E +T +Y+ N+ P+VT+ + + F G
Sbjct: 223 -----------------------KFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGE-- 257
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
I + RD +GFGFV YSTH A A+
Sbjct: 258 ITSATLSRDPEGKSRGFGFVNYSTHESAQAAV 289
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R ++ +F NI++ ++ P+VT+ F + +
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEIT 259
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + D + G+SRGFGFV++ + AQ+A++++ K + ++++ A K E+
Sbjct: 260 SATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELR 318
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ L S G +YV NL +V L F
Sbjct: 319 KQYEAAR----LEKASKYQG---------------VNLYVKNLTDDVDDEKLRELFGPY- 358
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 359 -GTITSAKVMRD 369
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 48/285 (16%)
Query: 43 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGF 98
PSG P T S+YVG + VTE +L E+F+S GPV ++ R + Y +
Sbjct: 72 PSGTAP------TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTD 155
+++ + A+ LN + G+P ++ W+ QR+ + G N+F+ +L P + +
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWS----QRDPSLRKMGTGNVFIKNLDPAIDN 181
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L FS + +V D+ G ++G+GFV F + + A +AI + G L +++
Sbjct: 182 KALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Query: 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVT 275
G++ ++ +K EA + N +T VY+ NL E+T
Sbjct: 241 -------GHHVSRRERQSK------------------VEALKAN--FTNVYIKNLDTEIT 273
Query: 276 QLDLHRHFHSLGAGV-IEEVRVQRDK--GFGFVRYSTHAEAALAI 317
+ + F G + V+ Q DK GFGFV Y+ H A A+
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 37/283 (13%)
Query: 52 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDR 104
DPS + +V++ N+ + L + FS+ G + CK+ + YGF+H+
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSV 218
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLF 159
SA AI +NG L + + V + +R E +F N+++ +L E+T+
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + + ++ DQ + RGFGFV++ N + AQ A+++L K +++ A
Sbjct: 279 DLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQ 337
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
K E+ + + +E N Q +++ NL EV L
Sbjct: 338 KKHEREEELRKRYEQMKLEKMNKY-----------------QGVNLFIKNLQDEVDDERL 380
Query: 280 HRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
F + G I ++ D KGFGFV Y+T EA A+
Sbjct: 381 KAEFSAF--GTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAV 421
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKS-SYGFIHYFDRRSAAMAILSL 114
+VY+ N+ T++TE ++F G + L++ DK +GF++Y + A A+ L
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLF 159
N + G+ + V A +RE+ N+F+ +L EV D L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
A FS + + + A++M D++ G+S+GFGFV + ++A A+ ++ + L + + A
Sbjct: 382 AEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Query: 220 K 220
+
Sbjct: 441 R 441
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEA 313
P ++YVG L P VT+ L F+S+G + +RV RD G+ +V + +
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGP--VASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 314 ALAIQMGNTT 323
A+ N T
Sbjct: 135 EKALDELNYT 144
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
++YVG + +V+E +L E+ GPV + + + +GF+ + A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-R 172
LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS + +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+M D +G S+GF F++F + + + +A+ + G++L +R I ++A K
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 41/184 (22%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
I+VG L +V+++ L+ + D+ T +GFGFV F ++DA AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263
L + I+ N A+ N + N
Sbjct: 75 NMIKLYGKPIKVNKASA----------------------------HEKNMDVGAN----- 101
Query: 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++VGNL PEV + L+ F + G +++ ++ RD KGF F+ +++ + A+
Sbjct: 102 -IFVGNLDPEVDEKLLYDTFSAFGV-ILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 318 QMGN 321
+ N
Sbjct: 160 EAMN 163
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+++VGN+ +V E LL + FS+ G + I +D S + FI++ ++ A+
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 113 SLNGRHLFGQPIKVNWAY---ASGQREDTS 139
++NG+ L + I V++A+ + G+R T+
Sbjct: 161 AMNGQFLCNRAITVSYAFKRDSKGERHGTA 190
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 52/304 (17%)
Query: 30 HPGLLAAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEG 85
+P +AP++ + S + P PS + S+YVG + VTE +L E+FSS G V
Sbjct: 23 NPAATSAPEVTAVESAS--PSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVAS 80
Query: 86 CKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT--- 138
++ R + Y +++Y + A+ LN + G+P ++ W+ QR+
Sbjct: 81 IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWS----QRDPALRK 136
Query: 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198
+G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + + A +
Sbjct: 137 TGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANN 195
Query: 199 AINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPEN 258
AI + G L +++ + +D+QS + E
Sbjct: 196 AIKHVNGMLLNDKKVFVGHHI----SKKDRQS-----------------------KFEEM 228
Query: 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEA 313
+T VY+ N+ EVT + + F G I + RD +GFGFV +STH A
Sbjct: 229 KANFTNVYIKNIDQEVTDEEFRKMFEKFGE--ITSATLSRDQEGKSRGFGFVNFSTHDSA 286
Query: 314 ALAI 317
A+
Sbjct: 287 QAAV 290
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F N+++ ++ EVTD F + +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + DQ+ G+SRGFGFV+F AQ+A++++ K + +++ A K E+
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ L S G +YV NL +V L F
Sbjct: 320 KQYEAAR----LEKASKYQG---------------VNLYVKNLTDDVDDEKLRELFSPF- 359
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 360 -GTITSAKVMRD 370
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 62/225 (27%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ NI +VT+ +++F G + L R + +GF+++ SA A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATLF 159
N + + GQ + V A Y + + E S + N++V +L+ +V D L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 160 ACFSVYPSCSDARVMWDQKT---------------------------------------- 179
FS + + + A+VM D T
Sbjct: 354 ELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTE 413
Query: 180 ----GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
G+S+GFGFV F + +A A+ ++ + + + + A +
Sbjct: 414 KKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 458
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 46/279 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG + VTE +L E+FSS G V ++ R + Y +++Y D A+
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ +G N+F+ +L + + L F+ + +
Sbjct: 103 LNYTLIKGKPCRIMWS----QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D+ G S+G+GFV + + A +AI + G L +++ + +D+QS
Sbjct: 159 CKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI----SKKDRQS 213
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+ E +T +Y+ N+ PEV + + F G
Sbjct: 214 -----------------------KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-- 248
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQ 324
I + RD +GFGFV +STH A A++ N +
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKE 287
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F NI++ ++ PEV D F + +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + D + G+SRGFGFV+F + AQ+A+ ++ K + S+++ A K E+
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELR 309
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ + S G +YV NL +V L F
Sbjct: 310 KQYEAAR----MEKASKYQG---------------VNLYVKNLTDDVDDDKLRELFGPY- 349
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 350 -GTITSAKVMRD 360
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 229 QSSDAKSVVELTNGSSEDGK--ETTNTEAPE--NNPQYTTVYVGNLAPEVTQLDLHRHFH 284
++S + E TNG+ ++ E T EAP + P ++YVG L P VT+ L+ F
Sbjct: 4 ETSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFS 63
Query: 285 SLGAGVIEEVRVQRDK------GFGFVRY--STHAEAAL 315
S+G + +RV RD G+ +V Y + H E AL
Sbjct: 64 SIGQ--VASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 46/289 (15%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSY 96
P PS P P S+YVG + VTE +L E+FS G V ++ R + Y
Sbjct: 48 PTPSSAAP---HPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGY 104
Query: 97 GFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEV 153
+++Y A+ LN + G+P ++ W+ QR+ +G N+F+ +L +
Sbjct: 105 AYVNYNTTADGEKALEELNYTLIKGRPCRIMWS----QRDPALRKTGQGNVFIKNLDVAI 160
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ L F+ + + +V D+ G S+G+GFV + + A AI + G L +++
Sbjct: 161 DNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 219
Query: 214 RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE 273
+D+QS + E +T +YV N+ PE
Sbjct: 220 YVGHHIP----KKDRQS-----------------------KFDEMKANFTNIYVKNINPE 252
Query: 274 VTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 318
VT + F G + + + + +GFGFV +++H +A+ A+Q
Sbjct: 253 VTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ 301
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 27/250 (10%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+V++ N+ + L + F++ G + CK+ + + + YGF+HY +A+ AI +
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V R ++ +F NI+V +++PEVTD F Y +
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 229
+ + DQ+TG+SRGFGFV+F + +DA A+ +L K + + A K E+ +
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELR 329
Query: 230 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289
S + E + Q +Y+ NL EV L + F G
Sbjct: 330 KSYEAARQEKASKY-----------------QGVNLYIKNLDDEVDDEKLRQLFSEFGP- 371
Query: 290 VIEEVRVQRD 299
I +V RD
Sbjct: 372 -ITSAKVMRD 380
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 97/239 (40%), Gaps = 59/239 (24%)
Query: 103 DRRSAAMAILSLNGRHLFGQPIKVN---WAYASGQREDTSG------------HFNIFVG 147
D+ ++ +A ++NG G+ VN A +G+ DT+G +++VG
Sbjct: 11 DQLTSDLANANMNG----GEKTTVNTNVGASFTGEEIDTAGPTPSSAAPHPQASASLYVG 66
Query: 148 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207
+L P VT+A LF FS S + RV D T RS G+ +V++ D + A+ +L
Sbjct: 67 ELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTL 126
Query: 208 LGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYV 267
+ R R W+ + + Q + V++
Sbjct: 127 IKGRPCRIMWSQRDPALRKTGQGN---------------------------------VFI 153
Query: 268 GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
NL + LH F + G I +V +D KG+GFV Y T A+ AI+ N
Sbjct: 154 KNLDVAIDNKALHDTFAAFGN--ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 210
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
++YV NI+ +VT+ + +F G V L R ++ +GF+++ A+ A+
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 114 LNGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATL 158
LN + GQ + V A Y + ++E S + N+++ +L EV D L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 159 FACFSVYPSCSDARVMWDQKT 179
FS + + A+VM D T
Sbjct: 363 RQLFSEFGPITSAKVMRDSIT 383
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 234 KSVVELTNGSSEDGKE------TTNTEAPENNPQYT-TVYVGNLAPEVTQLDLHRHFHSL 286
K+ V G+S G+E T ++ AP +PQ + ++YVG L P VT+ L F +
Sbjct: 27 KTTVNTNVGASFTGEEIDTAGPTPSSAAP--HPQASASLYVGELDPSVTEAMLFELFSQI 84
Query: 287 GAGVIEEVRVQRDK------GFGFVRYSTHAEAALAIQMGNTT 323
G+ + +RV RD G+ +V Y+T A+ A++ N T
Sbjct: 85 GS--VASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYT 125
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 51/315 (16%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----K 91
AP++ + S P P + S+YVG + VTE +L E+FSS G V ++ R +
Sbjct: 29 APEVTAVESTTAPNASQPHSA-SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR 87
Query: 92 DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGD 148
Y +++Y + A+ LN + G+P ++ W+ QR+ +G N+F+ +
Sbjct: 88 RSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWS----QRDPALRKTGQGNVFIKN 143
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
L + + L F+ + + +V D+ G S+G+GFV + + A +AI + G L
Sbjct: 144 LDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLL 202
Query: 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
+++ + +D+QS + E +T VY+
Sbjct: 203 NDKKVFVGHHI----SKKDRQS-----------------------KFEEMKANFTNVYIK 235
Query: 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNT- 322
N+ +VT+ + F G I + RD +GFGFV +STH A A+ N
Sbjct: 236 NIDQDVTEEEFRELFEKFGE--ITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEK 293
Query: 323 ---TQSSYLFGKQMK 334
TQ Y+ Q K
Sbjct: 294 EIRTQKLYVGRAQKK 308
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F N+++ ++ +VT+ F + +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + DQ+ G+SRGFGFV+F + AQ+A++++ K + ++++ A K E+
Sbjct: 258 SATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELR 316
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ L S G +YV NL +V L F
Sbjct: 317 KQYEAAR----LEKASKYQG---------------VNLYVKNLTDDVDDEKLRELFGPY- 356
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 357 -GTITSAKVMRD 367
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ NI VTE +E+F G + L R + +GF+++ SA A+ +
Sbjct: 231 NVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEM 290
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATLF 159
N + + Q + V A Y + + E S + N++V +L+ +V D L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 160 ACFSVYPSCSDARVMWDQKTGRSR 183
F Y + + A+VM D R++
Sbjct: 351 ELFGPYGTITSAKVMRDTNIERTQ 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,903,151
Number of Sequences: 539616
Number of extensions: 5513578
Number of successful extensions: 51049
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 343
Number of HSP's that attempted gapping in prelim test: 30492
Number of HSP's gapped (non-prelim): 14700
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)