Query 019811
Match_columns 335
No_of_seqs 245 out of 2816
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.2E-46 9E-51 330.3 31.8 272 56-335 3-343 (352)
2 KOG0145 RNA-binding protein EL 100.0 9.2E-42 2E-46 267.2 24.8 275 53-335 38-352 (360)
3 KOG0117 Heterogeneous nuclear 100.0 9.4E-42 2E-46 286.2 24.2 237 53-335 80-325 (506)
4 TIGR01645 half-pint poly-U bin 100.0 2E-40 4.3E-45 300.4 34.1 167 55-221 106-284 (612)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.3E-41 2E-45 304.8 31.7 270 55-335 1-345 (481)
6 TIGR01628 PABP-1234 polyadenyl 100.0 5.7E-41 1.2E-45 313.9 28.6 241 58-335 2-255 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.2E-40 6.9E-45 301.3 32.6 271 54-332 94-465 (481)
8 TIGR01628 PABP-1234 polyadenyl 100.0 6.7E-41 1.5E-45 313.4 28.1 258 55-335 87-358 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.5E-40 3.3E-45 300.8 26.7 237 53-335 55-301 (578)
10 TIGR01622 SF-CC1 splicing fact 100.0 7.4E-39 1.6E-43 293.3 31.7 277 53-335 86-442 (457)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2E-38 4.3E-43 294.4 31.6 269 52-335 171-496 (509)
12 KOG0148 Apoptosis-promoting RN 100.0 1.2E-39 2.6E-44 256.8 19.5 228 53-335 3-232 (321)
13 KOG0127 Nucleolar protein fibr 100.0 2E-36 4.4E-41 259.9 25.1 275 57-335 6-372 (678)
14 KOG0144 RNA-binding protein CU 100.0 3.8E-35 8.3E-40 245.4 20.8 169 52-223 30-208 (510)
15 TIGR01659 sex-lethal sex-letha 100.0 2.2E-32 4.8E-37 236.4 23.5 169 52-223 103-277 (346)
16 KOG0124 Polypyrimidine tract-b 100.0 5.6E-32 1.2E-36 222.0 22.6 166 56-221 113-290 (544)
17 KOG0123 Polyadenylate-binding 100.0 6.2E-32 1.3E-36 234.7 21.7 231 58-334 3-239 (369)
18 KOG0123 Polyadenylate-binding 100.0 9.4E-31 2E-35 227.3 19.6 253 59-335 79-343 (369)
19 TIGR01659 sex-lethal sex-letha 100.0 2.9E-30 6.3E-35 223.2 18.9 159 137-335 103-269 (346)
20 KOG0148 Apoptosis-promoting RN 100.0 6.7E-30 1.5E-34 201.8 18.0 169 54-228 60-245 (321)
21 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.8E-29 2.1E-33 219.2 22.7 168 55-222 88-350 (352)
22 TIGR01645 half-pint poly-U bin 100.0 4E-29 8.7E-34 227.0 18.5 166 141-335 107-278 (612)
23 KOG0127 Nucleolar protein fibr 100.0 7.6E-29 1.6E-33 213.5 16.8 265 56-320 117-516 (678)
24 KOG1190 Polypyrimidine tract-b 100.0 6.5E-27 1.4E-31 195.0 25.0 275 52-334 146-484 (492)
25 KOG0147 Transcriptional coacti 100.0 2E-28 4.4E-33 211.8 16.4 278 51-334 174-521 (549)
26 KOG0110 RNA-binding protein (R 100.0 4.6E-28 9.9E-33 215.2 18.6 248 54-334 383-686 (725)
27 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-26 2.2E-31 211.2 21.8 218 55-287 137-366 (578)
28 KOG0131 Splicing factor 3b, su 99.9 5E-27 1.1E-31 175.1 13.5 172 52-225 5-181 (203)
29 KOG0144 RNA-binding protein CU 99.9 5.4E-27 1.2E-31 196.8 11.6 150 139-324 32-189 (510)
30 TIGR01622 SF-CC1 splicing fact 99.9 6.8E-26 1.5E-30 207.8 19.5 168 139-335 87-260 (457)
31 KOG0145 RNA-binding protein EL 99.9 4.6E-26 9.9E-31 179.2 12.9 150 138-324 38-193 (360)
32 KOG4212 RNA-binding protein hn 99.9 3.2E-23 7E-28 174.4 25.6 165 52-217 40-290 (608)
33 KOG0109 RNA-binding protein LA 99.9 1.6E-25 3.4E-30 179.0 10.7 148 58-222 4-151 (346)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.9E-24 8.4E-29 198.9 21.6 167 54-220 293-501 (509)
35 KOG0131 Splicing factor 3b, su 99.9 3.4E-25 7.4E-30 165.3 11.1 160 138-335 6-171 (203)
36 KOG0117 Heterogeneous nuclear 99.9 2E-24 4.3E-29 182.3 15.5 166 53-226 161-336 (506)
37 KOG1190 Polypyrimidine tract-b 99.9 8.2E-23 1.8E-27 170.7 18.0 272 53-335 25-367 (492)
38 KOG0110 RNA-binding protein (R 99.9 6.1E-23 1.3E-27 182.8 13.0 164 59-222 518-694 (725)
39 KOG0109 RNA-binding protein LA 99.9 4E-23 8.7E-28 165.3 9.7 142 142-335 3-144 (346)
40 KOG0124 Polypyrimidine tract-b 99.9 2E-23 4.4E-28 171.9 7.9 165 142-335 114-284 (544)
41 KOG1456 Heterogeneous nuclear 99.9 3.1E-20 6.8E-25 153.6 25.0 260 61-330 127-474 (494)
42 KOG1456 Heterogeneous nuclear 99.9 6.4E-20 1.4E-24 151.8 23.2 272 52-335 27-357 (494)
43 KOG0146 RNA-binding protein ET 99.9 7.5E-21 1.6E-25 150.5 12.5 170 54-223 17-367 (371)
44 KOG0120 Splicing factor U2AF, 99.9 1E-20 2.2E-25 166.5 13.8 263 53-334 172-485 (500)
45 KOG4211 Splicing factor hnRNP- 99.9 2E-19 4.4E-24 154.3 21.2 262 53-319 7-340 (510)
46 KOG0105 Alternative splicing f 99.8 2.6E-20 5.7E-25 139.5 13.4 157 54-217 4-186 (241)
47 KOG0146 RNA-binding protein ET 99.8 8.2E-21 1.8E-25 150.3 9.3 208 121-335 2-359 (371)
48 KOG4206 Spliceosomal protein s 99.8 5.6E-19 1.2E-23 137.7 15.6 159 56-219 9-220 (221)
49 KOG4206 Spliceosomal protein s 99.8 1.2E-18 2.6E-23 135.9 16.2 185 140-333 8-214 (221)
50 KOG4205 RNA-binding protein mu 99.8 3.4E-19 7.3E-24 149.8 10.5 170 55-226 5-181 (311)
51 KOG0105 Alternative splicing f 99.8 1E-17 2.2E-22 125.7 15.3 169 140-323 5-173 (241)
52 KOG4205 RNA-binding protein mu 99.8 2.1E-18 4.5E-23 145.1 9.4 160 140-335 5-170 (311)
53 KOG1457 RNA binding protein (c 99.7 5.4E-17 1.2E-21 125.5 14.1 184 140-323 33-271 (284)
54 KOG1457 RNA binding protein (c 99.7 9.2E-17 2E-21 124.2 15.4 153 52-208 30-273 (284)
55 KOG1548 Transcription elongati 99.7 1.9E-16 4.2E-21 130.3 17.0 166 52-221 130-352 (382)
56 KOG0147 Transcriptional coacti 99.7 1.2E-18 2.6E-23 151.6 4.4 168 141-335 179-352 (549)
57 PLN03134 glycine-rich RNA-bind 99.7 4.7E-17 1E-21 123.6 12.3 85 138-222 31-115 (144)
58 PLN03134 glycine-rich RNA-bind 99.7 2.9E-16 6.2E-21 119.3 12.8 81 53-133 31-115 (144)
59 KOG1548 Transcription elongati 99.7 4.3E-16 9.4E-21 128.2 13.7 187 139-334 132-345 (382)
60 KOG1365 RNA-binding protein Fu 99.7 2.1E-16 4.5E-21 131.6 9.9 270 55-335 59-356 (508)
61 KOG0106 Alternative splicing f 99.7 2.3E-16 5.1E-21 124.5 8.3 162 143-335 3-165 (216)
62 KOG0125 Ataxin 2-binding prote 99.7 2.7E-16 5.9E-21 128.5 8.1 82 52-133 92-175 (376)
63 KOG0106 Alternative splicing f 99.6 3.6E-16 7.9E-21 123.4 7.6 149 57-217 2-167 (216)
64 KOG0107 Alternative splicing f 99.6 7.8E-16 1.7E-20 114.8 8.2 79 55-134 9-87 (195)
65 KOG0114 Predicted RNA-binding 99.6 2.8E-15 6.1E-20 101.7 9.8 84 48-131 10-94 (124)
66 PF00076 RRM_1: RNA recognitio 99.6 2.2E-15 4.8E-20 100.7 7.7 67 59-125 1-70 (70)
67 KOG0122 Translation initiation 99.6 4.2E-15 9.2E-20 116.8 9.6 84 138-221 186-269 (270)
68 KOG4211 Splicing factor hnRNP- 99.6 3.1E-14 6.8E-19 122.8 15.6 164 139-335 8-176 (510)
69 KOG4212 RNA-binding protein hn 99.6 5.1E-14 1.1E-18 119.4 16.3 188 141-334 44-287 (608)
70 PF00076 RRM_1: RNA recognitio 99.6 7.5E-15 1.6E-19 98.2 9.0 70 144-214 1-70 (70)
71 PLN03120 nucleic acid binding 99.6 9.9E-15 2.1E-19 118.5 10.9 77 56-133 4-81 (260)
72 KOG0121 Nuclear cap-binding pr 99.6 1.2E-14 2.6E-19 102.6 7.2 78 53-130 33-114 (153)
73 PF14259 RRM_6: RNA recognitio 99.5 3.4E-14 7.3E-19 94.9 7.8 67 59-125 1-70 (70)
74 KOG0122 Translation initiation 99.5 1.3E-13 2.7E-18 108.6 11.2 81 52-132 185-269 (270)
75 PF14259 RRM_6: RNA recognitio 99.5 1.1E-13 2.4E-18 92.4 9.0 70 144-214 1-70 (70)
76 KOG0120 Splicing factor U2AF, 99.5 3E-13 6.6E-18 119.7 13.9 169 53-221 286-492 (500)
77 KOG0121 Nuclear cap-binding pr 99.5 6.8E-14 1.5E-18 98.8 7.0 81 140-220 35-115 (153)
78 KOG0149 Predicted RNA-binding 99.5 5.7E-14 1.2E-18 110.1 7.3 80 142-222 13-92 (247)
79 KOG0125 Ataxin 2-binding prote 99.5 1.8E-13 3.8E-18 112.2 9.3 103 115-222 73-175 (376)
80 KOG0114 Predicted RNA-binding 99.5 3.3E-13 7.1E-18 91.7 9.0 82 137-221 14-95 (124)
81 KOG0126 Predicted RNA-binding 99.5 5E-15 1.1E-19 111.1 0.3 83 140-222 34-116 (219)
82 KOG0107 Alternative splicing f 99.5 1.1E-13 2.4E-18 103.4 7.2 79 140-223 9-87 (195)
83 PLN03213 repressor of silencin 99.5 1.8E-13 3.8E-18 118.0 8.9 77 55-131 9-87 (759)
84 COG0724 RNA-binding proteins ( 99.5 8.4E-13 1.8E-17 113.7 13.4 121 56-176 115-260 (306)
85 KOG0113 U1 small nuclear ribon 99.5 4.4E-13 9.5E-18 108.6 9.9 83 138-220 98-180 (335)
86 KOG4207 Predicted splicing fac 99.5 1.3E-13 2.8E-18 105.7 6.3 87 136-222 8-94 (256)
87 KOG4660 Protein Mei2, essentia 99.5 2.1E-12 4.6E-17 113.4 14.4 161 52-221 71-250 (549)
88 PLN03121 nucleic acid binding 99.4 7.4E-13 1.6E-17 105.8 10.5 76 55-131 4-80 (243)
89 smart00362 RRM_2 RNA recogniti 99.4 7.2E-13 1.6E-17 88.7 9.0 70 58-127 1-72 (72)
90 PLN03120 nucleic acid binding 99.4 6.8E-13 1.5E-17 107.9 10.3 77 141-221 4-80 (260)
91 COG0724 RNA-binding proteins ( 99.4 4.1E-12 8.9E-17 109.4 14.4 144 141-298 115-259 (306)
92 KOG0111 Cyclophilin-type pepti 99.4 1.9E-13 4E-18 105.8 5.1 85 140-224 9-93 (298)
93 PF13893 RRM_5: RNA recognitio 99.4 1.7E-12 3.6E-17 82.3 7.7 56 73-129 1-56 (56)
94 KOG0108 mRNA cleavage and poly 99.4 1.9E-12 4.2E-17 114.1 9.5 83 142-224 19-101 (435)
95 KOG0149 Predicted RNA-binding 99.4 1.4E-12 3.1E-17 102.4 7.6 78 53-131 9-90 (247)
96 KOG4207 Predicted splicing fac 99.4 9E-13 2E-17 101.1 6.1 76 55-130 12-91 (256)
97 cd00590 RRM RRM (RNA recogniti 99.4 5.6E-12 1.2E-16 84.8 9.4 71 58-128 1-74 (74)
98 smart00362 RRM_2 RNA recogniti 99.4 5E-12 1.1E-16 84.6 9.0 72 143-216 1-72 (72)
99 smart00360 RRM RNA recognition 99.4 4.8E-12 1E-16 84.4 8.0 67 61-127 1-71 (71)
100 PLN03213 repressor of silencin 99.4 3.7E-12 8.1E-17 110.0 9.2 78 139-220 8-87 (759)
101 KOG0129 Predicted RNA-binding 99.3 2.9E-11 6.3E-16 105.5 14.7 151 52-202 255-432 (520)
102 KOG0130 RNA-binding protein RB 99.3 2.9E-12 6.3E-17 91.5 6.9 87 136-222 67-153 (170)
103 smart00360 RRM RNA recognition 99.3 6.6E-12 1.4E-16 83.7 8.2 71 146-216 1-71 (71)
104 KOG0113 U1 small nuclear ribon 99.3 8.5E-12 1.8E-16 101.2 9.9 78 52-129 97-178 (335)
105 KOG0126 Predicted RNA-binding 99.3 1.8E-13 4E-18 102.7 0.1 79 54-132 33-115 (219)
106 PLN03121 nucleic acid binding 99.3 1.1E-11 2.5E-16 99.1 9.9 77 140-220 4-80 (243)
107 KOG0111 Cyclophilin-type pepti 99.3 2.9E-12 6.3E-17 99.3 5.2 81 54-134 8-92 (298)
108 KOG0128 RNA-binding protein SA 99.3 8.3E-13 1.8E-17 121.1 2.2 145 55-220 666-814 (881)
109 KOG1365 RNA-binding protein Fu 99.3 8.5E-12 1.8E-16 104.5 7.6 162 56-219 161-360 (508)
110 KOG0130 RNA-binding protein RB 99.3 1.8E-11 3.9E-16 87.5 7.8 82 53-134 69-154 (170)
111 cd00590 RRM RRM (RNA recogniti 99.3 5.5E-11 1.2E-15 79.9 9.6 74 143-217 1-74 (74)
112 KOG4307 RNA binding protein RB 99.3 1.2E-10 2.6E-15 104.7 13.6 187 142-335 312-508 (944)
113 PF13893 RRM_5: RNA recognitio 99.3 4.3E-11 9.4E-16 75.8 7.9 56 158-218 1-56 (56)
114 KOG0129 Predicted RNA-binding 99.2 3.2E-10 6.9E-15 99.1 15.3 163 139-319 257-432 (520)
115 smart00361 RRM_1 RNA recogniti 99.2 5.4E-11 1.2E-15 79.0 7.8 61 155-215 2-69 (70)
116 KOG0108 mRNA cleavage and poly 99.2 2.7E-11 5.8E-16 107.0 7.7 77 57-133 19-99 (435)
117 KOG4307 RNA binding protein RB 99.2 5.3E-10 1.1E-14 100.6 14.1 77 53-129 431-511 (944)
118 KOG4454 RNA binding protein (R 99.1 2E-11 4.3E-16 94.7 1.9 146 53-211 6-153 (267)
119 KOG0128 RNA-binding protein SA 99.1 6.5E-12 1.4E-16 115.4 -1.4 219 56-332 571-806 (881)
120 KOG0415 Predicted peptidyl pro 99.1 6.1E-11 1.3E-15 98.4 4.4 84 137-220 235-318 (479)
121 KOG0132 RNA polymerase II C-te 99.1 2.2E-10 4.8E-15 104.3 7.9 106 56-163 421-528 (894)
122 smart00361 RRM_1 RNA recogniti 99.1 5.1E-10 1.1E-14 74.2 7.1 57 70-126 2-69 (70)
123 KOG0112 Large RNA-binding prot 99.0 1.5E-10 3.2E-15 107.1 4.4 160 52-222 368-532 (975)
124 KOG0226 RNA-binding proteins [ 99.0 1.2E-09 2.5E-14 87.0 7.5 162 59-220 99-269 (290)
125 KOG0153 Predicted RNA-binding 99.0 1.1E-09 2.3E-14 91.0 7.5 78 52-131 224-302 (377)
126 KOG0151 Predicted splicing reg 99.0 2.1E-09 4.6E-14 97.1 8.7 79 53-131 171-256 (877)
127 KOG0132 RNA polymerase II C-te 98.9 3.2E-09 6.8E-14 97.0 7.9 79 141-225 421-499 (894)
128 KOG4208 Nucleolar RNA-binding 98.9 5.1E-09 1.1E-13 81.0 7.8 81 141-221 49-130 (214)
129 KOG0415 Predicted peptidyl pro 98.9 3.7E-09 8E-14 88.0 7.2 80 52-131 235-318 (479)
130 KOG4208 Nucleolar RNA-binding 98.8 1.6E-08 3.6E-13 78.3 7.2 78 55-132 48-130 (214)
131 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.6E-13 85.0 6.3 73 259-335 225-297 (377)
132 KOG4210 Nuclear localization s 98.8 8.1E-09 1.8E-13 87.3 5.5 167 55-222 87-265 (285)
133 KOG4661 Hsp27-ERE-TATA-binding 98.8 2.5E-08 5.4E-13 88.2 7.8 82 141-222 405-486 (940)
134 KOG4660 Protein Mei2, essentia 98.7 1.1E-08 2.4E-13 90.4 5.0 165 137-323 71-235 (549)
135 PF04059 RRM_2: RNA recognitio 98.7 1.2E-07 2.7E-12 65.8 8.6 79 142-220 2-86 (97)
136 KOG4454 RNA binding protein (R 98.7 4.1E-09 8.8E-14 82.1 1.0 137 139-323 7-148 (267)
137 KOG0112 Large RNA-binding prot 98.7 1.3E-08 2.8E-13 94.5 4.2 149 140-331 371-519 (975)
138 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.8E-07 3.8E-12 83.0 9.4 80 53-132 402-485 (940)
139 KOG0116 RasGAP SH3 binding pro 98.6 1.2E-07 2.7E-12 83.6 8.4 79 51-130 283-365 (419)
140 KOG0533 RRM motif-containing p 98.6 2.1E-07 4.5E-12 75.9 8.2 83 139-222 81-163 (243)
141 PF11608 Limkain-b1: Limkain b 98.6 4E-07 8.7E-12 60.1 7.8 69 58-132 4-77 (90)
142 KOG0533 RRM motif-containing p 98.6 3.4E-07 7.3E-12 74.7 8.8 80 53-132 80-162 (243)
143 KOG4210 Nuclear localization s 98.6 8.3E-08 1.8E-12 81.2 5.4 165 140-335 87-258 (285)
144 KOG0226 RNA-binding proteins [ 98.4 6E-07 1.3E-11 71.9 6.8 143 159-334 117-263 (290)
145 KOG4676 Splicing factor, argin 98.4 1.5E-07 3.3E-12 79.6 3.5 146 58-209 9-214 (479)
146 PF04059 RRM_2: RNA recognitio 98.4 1.6E-06 3.6E-11 60.3 7.7 71 263-333 2-78 (97)
147 KOG4676 Splicing factor, argin 98.4 3.5E-07 7.6E-12 77.5 5.1 180 142-323 8-211 (479)
148 KOG0116 RasGAP SH3 binding pro 98.4 6.1E-07 1.3E-11 79.2 6.7 79 142-221 289-367 (419)
149 PF11608 Limkain-b1: Limkain b 98.4 1.8E-06 4E-11 57.0 6.6 65 263-335 3-71 (90)
150 KOG4209 Splicing factor RNPS1, 98.4 8.8E-07 1.9E-11 72.5 6.4 83 138-221 98-180 (231)
151 KOG2193 IGF-II mRNA-binding pr 98.3 2.8E-07 6E-12 78.9 2.0 154 58-221 3-157 (584)
152 KOG2193 IGF-II mRNA-binding pr 98.2 1.6E-07 3.4E-12 80.4 -0.6 145 142-334 2-150 (584)
153 KOG0151 Predicted splicing reg 98.2 4.2E-06 9E-11 76.4 8.0 72 259-335 171-251 (877)
154 KOG4209 Splicing factor RNPS1, 98.2 3.2E-06 6.9E-11 69.2 5.6 80 52-132 97-180 (231)
155 PF08777 RRM_3: RNA binding mo 98.1 7.1E-06 1.5E-10 58.6 6.2 57 263-321 2-58 (105)
156 PF08777 RRM_3: RNA binding mo 98.0 1.3E-05 2.9E-10 57.2 5.8 57 57-115 2-58 (105)
157 COG5175 MOT2 Transcriptional r 97.9 1.1E-05 2.4E-10 67.3 4.2 80 142-221 115-203 (480)
158 COG5175 MOT2 Transcriptional r 97.9 1.7E-05 3.7E-10 66.2 4.7 105 58-162 116-241 (480)
159 KOG0115 RNA-binding protein p5 97.8 7.4E-05 1.6E-09 60.3 6.7 90 105-205 5-94 (275)
160 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.9E-05 1.9E-09 45.7 5.1 52 57-111 2-53 (53)
161 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00012 2.5E-09 45.1 5.3 52 263-317 2-53 (53)
162 KOG3152 TBP-binding protein, a 97.6 3.1E-05 6.6E-10 62.4 2.4 73 140-212 73-157 (278)
163 KOG3152 TBP-binding protein, a 97.6 3.4E-05 7.4E-10 62.1 2.6 69 55-123 73-157 (278)
164 KOG1995 Conserved Zn-finger pr 97.6 0.00016 3.5E-09 61.3 6.0 82 52-133 62-155 (351)
165 KOG1995 Conserved Zn-finger pr 97.5 9E-05 1.9E-09 62.8 4.0 85 139-223 64-156 (351)
166 KOG1855 Predicted RNA-binding 97.5 0.00013 2.7E-09 63.2 4.6 64 258-323 227-309 (484)
167 PF08675 RNA_bind: RNA binding 97.5 0.00049 1.1E-08 45.7 6.2 59 53-116 6-64 (87)
168 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00076 1.6E-08 47.4 7.1 72 56-129 6-89 (100)
169 KOG1996 mRNA splicing factor [ 97.4 0.00047 1E-08 56.7 6.6 61 70-130 300-365 (378)
170 KOG1996 mRNA splicing factor [ 97.4 0.0006 1.3E-08 56.1 6.5 68 155-222 300-368 (378)
171 KOG0115 RNA-binding protein p5 97.4 0.00071 1.5E-08 54.8 6.8 85 195-321 6-93 (275)
172 KOG2202 U2 snRNP splicing fact 97.4 0.00013 2.8E-09 59.1 2.6 60 71-130 83-146 (260)
173 KOG2416 Acinus (induces apopto 97.3 0.00034 7.3E-09 63.1 4.6 77 52-130 440-520 (718)
174 KOG2314 Translation initiation 97.3 0.001 2.2E-08 59.7 7.5 78 140-218 57-141 (698)
175 PF10309 DUF2414: Protein of u 97.2 0.0026 5.6E-08 40.1 7.0 53 57-114 6-62 (62)
176 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0022 4.8E-08 45.1 6.8 64 263-333 7-83 (100)
177 PF08675 RNA_bind: RNA binding 97.1 0.0024 5.3E-08 42.5 6.2 55 142-205 10-64 (87)
178 KOG1855 Predicted RNA-binding 97.0 0.0053 1.1E-07 53.5 9.1 69 138-206 228-309 (484)
179 KOG4849 mRNA cleavage factor I 97.0 0.0011 2.4E-08 55.9 4.8 76 140-215 79-156 (498)
180 KOG2202 U2 snRNP splicing fact 97.0 0.00035 7.5E-09 56.6 1.5 53 277-334 83-141 (260)
181 PF08952 DUF1866: Domain of un 96.8 0.0034 7.4E-08 46.9 5.8 69 259-335 24-101 (146)
182 PF08952 DUF1866: Domain of un 96.8 0.0061 1.3E-07 45.6 6.7 56 71-131 51-106 (146)
183 PF10309 DUF2414: Protein of u 96.6 0.015 3.2E-07 36.7 6.7 53 263-320 6-62 (62)
184 KOG2591 c-Mpl binding protein, 96.6 0.0059 1.3E-07 55.0 6.6 69 263-333 176-244 (684)
185 KOG2416 Acinus (induces apopto 96.6 0.002 4.2E-08 58.4 3.5 77 256-333 438-514 (718)
186 KOG2314 Translation initiation 96.4 0.019 4.1E-07 52.0 8.2 75 54-128 56-140 (698)
187 PF15023 DUF4523: Protein of u 96.2 0.019 4.1E-07 42.4 5.9 73 53-129 83-159 (166)
188 PF10567 Nab6_mRNP_bdg: RNA-re 95.9 0.63 1.4E-05 39.1 14.1 158 47-205 6-213 (309)
189 KOG2253 U1 snRNP complex, subu 95.8 0.0066 1.4E-07 55.9 2.8 69 55-128 39-107 (668)
190 KOG4849 mRNA cleavage factor I 95.6 0.019 4.2E-07 48.7 4.6 67 263-332 81-153 (498)
191 PF07576 BRAP2: BRCA1-associat 95.6 0.16 3.5E-06 36.5 8.7 65 143-209 15-80 (110)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.013 2.9E-07 46.2 3.4 68 54-121 5-82 (176)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.024 5.3E-07 44.7 4.3 81 140-220 6-97 (176)
194 PF04847 Calcipressin: Calcipr 95.4 0.043 9.4E-07 43.4 5.6 61 69-131 8-70 (184)
195 KOG2068 MOT2 transcription fac 95.1 0.01 2.2E-07 50.4 1.2 81 142-222 78-164 (327)
196 PF07576 BRAP2: BRCA1-associat 95.0 0.3 6.5E-06 35.1 8.4 63 263-329 14-80 (110)
197 KOG4574 RNA-binding protein (c 95.0 0.018 3.9E-07 54.6 2.7 71 59-131 301-373 (1007)
198 PF04847 Calcipressin: Calcipr 94.7 0.11 2.5E-06 41.1 6.4 63 154-222 8-72 (184)
199 KOG2068 MOT2 transcription fac 94.6 0.015 3.3E-07 49.3 1.3 76 57-132 78-163 (327)
200 KOG0804 Cytoplasmic Zn-finger 94.4 0.19 4.2E-06 44.5 7.3 69 53-121 71-142 (493)
201 KOG4285 Mitotic phosphoprotein 94.3 0.35 7.5E-06 40.6 8.4 71 56-130 197-268 (350)
202 KOG0804 Cytoplasmic Zn-finger 94.1 0.27 5.9E-06 43.6 7.8 67 141-209 74-141 (493)
203 KOG2591 c-Mpl binding protein, 94.0 0.16 3.5E-06 46.2 6.3 95 107-217 150-248 (684)
204 PF15023 DUF4523: Protein of u 94.0 0.2 4.3E-06 37.2 5.7 71 141-219 86-160 (166)
205 PF11767 SET_assoc: Histone ly 93.9 0.36 7.9E-06 31.0 6.2 56 66-126 10-65 (66)
206 KOG4410 5-formyltetrahydrofola 93.5 0.16 3.5E-06 42.1 5.1 59 48-107 322-380 (396)
207 PF07292 NID: Nmi/IFP 35 domai 93.4 0.13 2.9E-06 35.1 3.7 73 186-284 1-74 (88)
208 KOG2135 Proteins containing th 93.2 0.062 1.3E-06 47.7 2.3 77 54-133 370-447 (526)
209 PF10567 Nab6_mRNP_bdg: RNA-re 93.1 3.9 8.5E-05 34.5 12.4 175 137-321 11-212 (309)
210 KOG4285 Mitotic phosphoprotein 92.7 0.22 4.7E-06 41.8 4.7 64 263-333 198-261 (350)
211 PF11767 SET_assoc: Histone ly 92.5 0.55 1.2E-05 30.2 5.4 53 273-333 11-63 (66)
212 KOG2253 U1 snRNP complex, subu 92.2 0.16 3.4E-06 47.3 3.7 69 258-334 36-104 (668)
213 PF07292 NID: Nmi/IFP 35 domai 92.0 0.29 6.3E-06 33.4 3.9 67 97-163 1-74 (88)
214 KOG2135 Proteins containing th 91.1 0.12 2.5E-06 46.1 1.5 70 260-335 370-440 (526)
215 KOG4410 5-formyltetrahydrofola 91.1 1.1 2.4E-05 37.4 7.0 47 263-310 331-377 (396)
216 KOG4574 RNA-binding protein (c 90.9 0.18 3.9E-06 48.2 2.7 59 265-325 301-359 (1007)
217 PF03880 DbpA: DbpA RNA bindin 89.5 1.1 2.3E-05 29.7 4.9 58 272-335 11-71 (74)
218 PF03880 DbpA: DbpA RNA bindin 88.0 1.1 2.5E-05 29.6 4.2 59 66-129 11-74 (74)
219 KOG4369 RTK signaling protein 84.6 1.8 3.8E-05 43.6 5.1 23 265-287 2065-2087(2131)
220 PF14111 DUF4283: Domain of un 84.0 2 4.2E-05 32.9 4.4 114 59-174 18-138 (153)
221 KOG2318 Uncharacterized conser 80.7 11 0.00023 35.2 8.2 130 53-220 171-307 (650)
222 KOG4019 Calcineurin-mediated s 77.0 1.4 3E-05 34.3 1.3 64 263-331 11-79 (193)
223 COG5624 TAF61 Transcription in 76.5 4.4 9.5E-05 35.8 4.3 13 275-287 459-471 (505)
224 TIGR02542 B_forsyth_147 Bacter 75.4 8.5 0.00018 27.5 4.7 111 64-193 11-129 (145)
225 PF02166 Androgen_recep: Andro 75.1 0.93 2E-05 38.7 0.0 14 70-83 152-165 (423)
226 KOG2318 Uncharacterized conser 71.5 20 0.00043 33.5 7.4 72 256-331 168-296 (650)
227 KOG3982 Runt and related trans 70.4 8 0.00017 33.7 4.4 11 70-80 98-108 (475)
228 PRK10927 essential cell divisi 68.7 29 0.00063 29.9 7.3 63 55-121 246-311 (319)
229 KOG4407 Predicted Rho GTPase-a 68.6 3.1 6.8E-05 42.4 1.9 12 57-68 412-423 (1973)
230 KOG4483 Uncharacterized conser 67.6 13 0.00028 32.9 5.2 55 263-319 392-446 (528)
231 KOG2891 Surface glycoprotein [ 65.5 3.8 8.2E-05 34.1 1.5 63 263-325 150-247 (445)
232 PF03468 XS: XS domain; Inter 65.5 8.8 0.00019 27.9 3.3 50 58-108 10-70 (116)
233 PRK14548 50S ribosomal protein 64.4 23 0.0005 24.1 4.9 54 266-320 24-81 (84)
234 PF03468 XS: XS domain; Inter 63.6 18 0.00038 26.4 4.6 50 263-312 9-68 (116)
235 TIGR03636 L23_arch archaeal ri 63.2 27 0.00058 23.3 5.0 55 265-320 16-74 (77)
236 PRK14548 50S ribosomal protein 62.9 36 0.00078 23.1 5.6 56 59-114 23-81 (84)
237 KOG4483 Uncharacterized conser 62.0 21 0.00045 31.7 5.3 55 56-113 391-446 (528)
238 TIGR03636 L23_arch archaeal ri 61.2 43 0.00094 22.3 5.7 57 58-114 15-74 (77)
239 KOG2891 Surface glycoprotein [ 60.3 36 0.00077 28.6 6.2 137 67-208 48-247 (445)
240 KOG2295 C2H2 Zn-finger protein 58.5 1.3 2.9E-05 40.5 -2.4 71 141-211 231-301 (648)
241 KOG1546 Metacaspase involved i 57.5 1.1E+02 0.0024 26.7 8.8 116 58-176 66-202 (362)
242 PF07530 PRE_C2HC: Associated 56.7 22 0.00048 23.0 3.7 63 156-221 2-65 (68)
243 KOG1151 Tousled-like protein k 55.4 5.7 0.00012 36.0 1.0 12 144-155 493-504 (775)
244 PF15513 DUF4651: Domain of un 52.6 31 0.00067 21.8 3.6 22 277-298 9-30 (62)
245 PRK10629 EnvZ/OmpR regulon mod 52.2 74 0.0016 23.6 6.3 61 260-323 33-96 (127)
246 PF08544 GHMP_kinases_C: GHMP 50.1 73 0.0016 21.1 6.1 43 71-114 37-79 (85)
247 KOG1295 Nonsense-mediated deca 50.1 22 0.00048 31.4 3.7 65 56-120 7-78 (376)
248 KOG4019 Calcineurin-mediated s 49.5 36 0.00078 26.8 4.3 75 143-223 12-92 (193)
249 KOG2295 C2H2 Zn-finger protein 48.4 3.7 7.9E-05 37.8 -1.3 67 55-121 230-300 (648)
250 PF03249 TSA: Type specific an 48.0 11 0.00025 32.9 1.6 10 70-79 341-350 (503)
251 KOG3878 Protein involved in ma 47.8 1.4E+02 0.003 26.1 7.8 39 66-104 301-352 (469)
252 KOG4592 Uncharacterized conser 47.4 16 0.00036 34.3 2.6 12 53-64 230-241 (728)
253 smart00596 PRE_C2HC PRE_C2HC d 47.3 31 0.00068 22.3 3.1 63 156-221 2-65 (69)
254 PF14111 DUF4283: Domain of un 43.7 29 0.00063 26.3 3.3 83 183-297 55-138 (153)
255 PRK10629 EnvZ/OmpR regulon mod 43.2 1.4E+02 0.0029 22.2 6.5 68 58-129 37-108 (127)
256 PF12829 Mhr1: Transcriptional 42.8 59 0.0013 22.5 4.1 52 269-321 19-72 (91)
257 KOG1151 Tousled-like protein k 42.0 20 0.00043 32.7 2.2 6 61-66 166-171 (775)
258 KOG2133 Transcriptional corepr 41.6 34 0.00073 34.2 3.8 7 7-13 1167-1173(1229)
259 PF14893 PNMA: PNMA 41.4 20 0.00043 31.5 2.1 53 54-106 16-74 (331)
260 PF02714 DUF221: Domain of unk 40.8 63 0.0014 28.2 5.3 56 186-284 1-56 (325)
261 PF11823 DUF3343: Protein of u 40.2 39 0.00084 22.1 3.0 28 301-331 2-29 (73)
262 PF03439 Spt5-NGN: Early trans 39.1 54 0.0012 22.2 3.6 34 82-116 33-66 (84)
263 PF09902 DUF2129: Uncharacteri 38.8 88 0.0019 20.5 4.3 39 76-119 16-54 (71)
264 KOG1295 Nonsense-mediated deca 37.6 40 0.00088 29.8 3.4 60 263-323 8-75 (376)
265 PF03439 Spt5-NGN: Early trans 37.3 74 0.0016 21.5 4.1 35 289-323 32-67 (84)
266 PF02714 DUF221: Domain of unk 37.0 76 0.0017 27.7 5.2 56 97-163 1-56 (325)
267 PF08544 GHMP_kinases_C: GHMP 36.8 1.2E+02 0.0027 19.9 5.7 42 277-321 37-80 (85)
268 PRK02302 hypothetical protein; 35.2 1E+02 0.0022 21.2 4.3 39 76-119 22-60 (89)
269 PF00276 Ribosomal_L23: Riboso 34.9 96 0.0021 21.4 4.4 44 266-310 23-83 (91)
270 KOG3702 Nuclear polyadenylated 34.5 60 0.0013 31.0 4.2 72 143-215 513-584 (681)
271 KOG4213 RNA-binding protein La 34.1 56 0.0012 25.7 3.3 53 57-113 112-169 (205)
272 KOG4407 Predicted Rho GTPase-a 33.8 21 0.00045 37.0 1.2 6 187-192 634-639 (1973)
273 cd04889 ACT_PDH-BS-like C-term 32.3 1.2E+02 0.0025 18.2 5.2 42 70-111 12-55 (56)
274 COG0150 PurM Phosphoribosylami 32.2 24 0.00053 30.8 1.2 48 70-117 275-322 (345)
275 PF13721 SecD-TM1: SecD export 31.7 1.9E+02 0.004 20.4 6.3 60 261-323 30-92 (101)
276 PRK02886 hypothetical protein; 31.6 1.3E+02 0.0027 20.7 4.3 39 76-119 20-58 (87)
277 KOG4592 Uncharacterized conser 31.5 19 0.00041 33.9 0.5 6 117-122 336-341 (728)
278 PF08734 GYD: GYD domain; Int 31.2 1.8E+02 0.0038 20.0 6.3 46 275-321 21-68 (91)
279 PRK11901 hypothetical protein; 30.9 2E+02 0.0043 25.2 6.4 60 53-116 242-306 (327)
280 KOG4008 rRNA processing protei 29.6 47 0.001 27.3 2.4 27 262-288 40-66 (261)
281 PF14893 PNMA: PNMA 29.2 39 0.00085 29.7 2.0 48 263-310 19-72 (331)
282 PF00403 HMA: Heavy-metal-asso 29.0 1.4E+02 0.0031 18.2 6.9 54 264-319 1-58 (62)
283 PF15053 Njmu-R1: Mjmu-R1-like 28.8 3.2E+02 0.007 24.1 7.3 40 53-93 34-83 (353)
284 PF08734 GYD: GYD domain; Int 27.8 2.1E+02 0.0045 19.7 5.6 45 70-114 22-67 (91)
285 PF15407 Spo7_2_N: Sporulation 27.6 24 0.00052 22.8 0.4 26 53-78 24-49 (67)
286 PTZ00191 60S ribosomal protein 25.7 2E+02 0.0044 21.8 5.0 53 266-319 85-141 (145)
287 PHA01632 hypothetical protein 25.5 74 0.0016 19.4 2.1 21 265-285 19-39 (64)
288 COG3254 Uncharacterized conser 25.5 2.5E+02 0.0054 20.0 5.0 41 277-318 27-69 (105)
289 COG5638 Uncharacterized conser 25.3 2.7E+02 0.0058 25.2 6.3 40 257-297 141-184 (622)
290 PRK11901 hypothetical protein; 25.0 2.4E+02 0.0053 24.7 5.9 59 261-322 244-306 (327)
291 KOG4008 rRNA processing protei 25.0 77 0.0017 26.2 2.8 34 53-86 37-70 (261)
292 PF12993 DUF3877: Domain of un 24.6 1.6E+02 0.0035 23.0 4.3 37 272-309 107-143 (175)
293 KOG4679 Uncharacterized protei 22.2 27 0.00059 31.7 -0.2 14 69-82 255-268 (572)
294 PF09707 Cas_Cas2CT1978: CRISP 22.1 2.2E+02 0.0047 19.5 4.2 44 58-101 27-71 (86)
295 COG0030 KsgA Dimethyladenosine 22.0 1.3E+02 0.0029 25.4 3.8 27 57-83 96-122 (259)
296 PF14026 DUF4242: Protein of u 21.6 2.5E+02 0.0055 18.6 7.1 59 59-118 3-70 (77)
297 PF10281 Ish1: Putative stress 21.0 92 0.002 17.3 1.9 18 67-84 3-20 (38)
298 cd04908 ACT_Bt0572_1 N-termina 21.0 2.2E+02 0.0048 17.7 7.7 45 69-113 14-59 (66)
299 COG2608 CopZ Copper chaperone 20.6 2.5E+02 0.0054 18.1 4.9 45 263-309 4-48 (71)
300 KOG4365 Uncharacterized conser 20.2 15 0.00033 33.0 -2.1 78 142-220 4-81 (572)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.2e-46 Score=330.34 Aligned_cols=272 Identities=27% Similarity=0.455 Sum_probs=215.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
..+|||+|||.++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++.|||..+.|++|+|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5689999999999999999999999999999999875 458999999999999999999999999999999999865
Q ss_pred CCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 019811 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS- 210 (335)
Q Consensus 132 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g- 210 (335)
... .....+|||+|||..+++++|.++|+.||.|..+.++++..++.++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 83 ~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 83 SSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 432 2345689999999999999999999999999999999988788899999999999999999999999998876
Q ss_pred -eeeEEEEccCCCCCCCCCCCcc------cccch-------------hcc---------------------------CCC
Q 019811 211 -RQIRCNWATKGAGNNEDKQSSD------AKSVV-------------ELT---------------------------NGS 243 (335)
Q Consensus 211 -~~l~v~~~~~~~~~~~~~~~~~------~~~~~-------------~~~---------------------------~~~ 243 (335)
..|.|.|+.............. +.... ... ...
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 6788888865542111100000 00000 000 000
Q ss_pred C-cCCcCC----------CCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc------cceEEEE
Q 019811 244 S-EDGKET----------TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVR 306 (335)
Q Consensus 244 ~-~~~~~~----------~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~------~g~afV~ 306 (335)
. ...... .....+.....+.+|||+|||+++++++|+++|++|| .|.++++..+ +|+|||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--~v~~v~i~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG--AVQNVKIIRDLTTNQCKGYGFVS 317 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeEcCCCCCccceEEEE
Confidence 0 000000 0000111122345799999999999999999999999 5888887654 7999999
Q ss_pred eCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 307 YSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 307 f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
|.+.++|.+|+..|||. .|+||.|+|
T Consensus 318 F~~~~~A~~Ai~~lnG~---~~~gr~i~V 343 (352)
T TIGR01661 318 MTNYDEAAMAILSLNGY---TLGNRVLQV 343 (352)
T ss_pred ECCHHHHHHHHHHhCCC---EECCeEEEE
Confidence 99999999999999999 999999986
No 2
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.2e-42 Score=267.18 Aligned_cols=275 Identities=29% Similarity=0.448 Sum_probs=223.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCC----CeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
......|.|.-||..+|++|++.+|...|+|+++++++|+.+ ||+||.|.+++||++|+..|||..+..++|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 344556889999999999999999999999999999999854 7999999999999999999999999999999999
Q ss_pred eccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
+.+.+. .....+|||++||..+|..||..+|++||.|..-+|+.|..+|.++|.+||.|+..++|++|+..|||..-
T Consensus 118 ARPSs~---~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 118 ARPSSD---SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred ccCChh---hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 987654 34446899999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC--eeeEEEEccCCCCCCCCCCCccc---------------ccchhc-------------cCCCCcCCcCCCCCCCCCC
Q 019811 209 GS--RQIRCNWATKGAGNNEDKQSSDA---------------KSVVEL-------------TNGSSEDGKETTNTEAPEN 258 (335)
Q Consensus 209 ~g--~~l~v~~~~~~~~~~~~~~~~~~---------------~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 258 (335)
.| ..|.|.|+..+............ .....+ ++..............+..
T Consensus 195 ~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred CCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 54 67999999876543322111110 000000 0000000011112222333
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc------cceEEEEeCCHHHHHHHHHhhcCCCcccccCcc
Q 019811 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (335)
Q Consensus 259 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~ 332 (335)
.....+|||.||.++..|.-|..+|.+||. +..|++.++ +|++||++.+.++|.-|+..|||+ .+++|.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGA--v~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy---~lg~rv 349 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY---RLGDRV 349 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccc--eeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc---cccceE
Confidence 445689999999999999999999999995 888888876 799999999999999999999999 999998
Q ss_pred ccC
Q 019811 333 MKV 335 (335)
Q Consensus 333 l~v 335 (335)
|.|
T Consensus 350 LQV 352 (360)
T KOG0145|consen 350 LQV 352 (360)
T ss_pred EEE
Confidence 864
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.4e-42 Score=286.21 Aligned_cols=237 Identities=24% Similarity=0.413 Sum_probs=208.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCcccc-CceeEEe
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF-GQPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~-g~~l~v~ 127 (335)
+...+.|||+.||.++.|++|.-+|++.|.|.+++++.++ ++|||||.|++.+.|.+|++.||+..|. |+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4567889999999999999999999999999999999984 5799999999999999999999999886 8999999
Q ss_pred eeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCC-CceeeEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCC
Q 019811 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (335)
.+. .++.|||+|+|.++++++|.+.+++.+ .|..|.+..++.+ .+++|||||+|.+...|..|.+.|-.
T Consensus 160 ~Sv---------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 160 VSV---------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred Eee---------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 875 346899999999999999999999987 4777777766533 47899999999999999999887743
Q ss_pred --ceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHh
Q 019811 206 --KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (335)
Q Consensus 206 --~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 283 (335)
..++|+.+.|.|+.+....... .....+.|||+||+.++|+|.|+++|
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded------------------------------~ms~VKvLYVRNL~~~tTeE~lk~~F 280 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDED------------------------------TMSKVKVLYVRNLMESTTEETLKKLF 280 (506)
T ss_pred CceeecCCcceeeccCcccCCChh------------------------------hhhheeeeeeeccchhhhHHHHHHHH
Confidence 4689999999999886543322 22234789999999999999999999
Q ss_pred hhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 284 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 284 ~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+.|| .+..|+..+| +|||+|.+.++|.+||+.+||+ .++|..|.|
T Consensus 281 ~~~G--~veRVkk~rD--YaFVHf~eR~davkAm~~~ngk---eldG~~iEv 325 (506)
T KOG0117|consen 281 NEFG--KVERVKKPRD--YAFVHFAEREDAVKAMKETNGK---ELDGSPIEV 325 (506)
T ss_pred Hhcc--ceEEeecccc--eeEEeecchHHHHHHHHHhcCc---eecCceEEE
Confidence 9999 6999988877 9999999999999999999999 999998875
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2e-40 Score=300.35 Aligned_cols=167 Identities=22% Similarity=0.404 Sum_probs=150.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..++|||+|||+++++++|+++|+.||+|.+|++..++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 35789999999999999999999999999999998764 57999999999999999999999999999999998754
Q ss_pred cCCCc--------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019811 131 ASGQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (335)
Q Consensus 131 ~~~~~--------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (335)
..... ......++|||+|||+++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|+..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 33211 1123347899999999999999999999999999999999988899999999999999999999999
Q ss_pred hCCceeCCeeeEEEEccCC
Q 019811 203 LTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 203 l~~~~~~g~~l~v~~~~~~ 221 (335)
||+..++|+.|+|.++..+
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999998753
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.3e-41 Score=304.81 Aligned_cols=270 Identities=19% Similarity=0.231 Sum_probs=207.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHH--hCCccccCceeEEeeeccC
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS--LNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~--l~~~~~~g~~l~v~~~~~~ 132 (335)
++++|||+|||.++++++|+++|+.||.|.+|+++++ ++||||+|.+.++|.+|+.. +++..+.|+.|+|.|+..+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~--k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG--KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC--CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 4689999999999999999999999999999999865 47999999999999999986 4788999999999998654
Q ss_pred CCccC---------CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019811 133 GQRED---------TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (335)
Q Consensus 133 ~~~~~---------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (335)
..... ......|+|.||+..+++++|+++|+.||.|.++.+.++. .+++|||+|.+.++|.+|+..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHh
Confidence 31111 1122478999999999999999999999999999988653 2468999999999999999999
Q ss_pred CCceeCC--eeeEEEEccCCCCCC-----CCCCCccccc------ch------hcc------------CCC--C----c-
Q 019811 204 TGKWLGS--RQIRCNWATKGAGNN-----EDKQSSDAKS------VV------ELT------------NGS--S----E- 245 (335)
Q Consensus 204 ~~~~~~g--~~l~v~~~~~~~~~~-----~~~~~~~~~~------~~------~~~------------~~~--~----~- 245 (335)
+|..+.| +.|+|.|++...... ..+.-..+.. .. ... .+. . .
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9999854 589999987644210 0000000000 00 000 000 0 0
Q ss_pred --C--CcCC--------------------CCCCCCCCCCCCCeEEEcCCCc-ccCHHHHHHHhhhcCCeeeEEEEEecc-
Q 019811 246 --D--GKET--------------------TNTEAPENNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (335)
Q Consensus 246 --~--~~~~--------------------~~~~~~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~i~~v~~~~~- 299 (335)
. ...+ .........+++++|||+|||+ .+++++|+++|+.|| .|..|+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~ 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC
Confidence 0 0000 0000011234668999999998 699999999999999 5889988876
Q ss_pred cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|+|||+|.+.++|.+|+..|||. .|+|++|+|
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~---~l~g~~l~v 345 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGV---KLFGKPLRV 345 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC---EECCceEEE
Confidence 699999999999999999999999 999999975
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.7e-41 Score=313.90 Aligned_cols=241 Identities=32% Similarity=0.560 Sum_probs=208.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
+|||+|||.++||++|+++|++||.|.+|++.+++. +|||||+|.+.++|.+|++.+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999988653 5899999999999999999999999999999999986433
Q ss_pred CccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 019811 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (335)
Q Consensus 134 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (335)
.. ......+|||+|||.++++++|+++|+.||.|.++.+..+ .+|+++|||||+|.+.++|.+|++.+++..+.|+.|
T Consensus 82 ~~-~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SL-RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred cc-cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 22 2234568999999999999999999999999999999988 467899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEE
Q 019811 214 RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293 (335)
Q Consensus 214 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~ 293 (335)
.|.....+.... .......++|||+|||.++++++|+++|+.|| .|.+
T Consensus 160 ~v~~~~~~~~~~------------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--~i~~ 207 (562)
T TIGR01628 160 YVGRFIKKHERE------------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG--EITS 207 (562)
T ss_pred EEeccccccccc------------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcC--CEEE
Confidence 997654432211 00112236799999999999999999999999 5778
Q ss_pred EEEecc-----cceEEEEeCCHHHHHHHHHhhcCCCccccc----CccccC
Q 019811 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF----GKQMKV 335 (335)
Q Consensus 294 v~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~----g~~l~v 335 (335)
+.+.++ +|+|||+|.+.++|.+|++.|+|. .+. |+.|.|
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~---~i~~~~~g~~l~v 255 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGK---KIGLAKEGKKLYV 255 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCc---EecccccceeeEe
Confidence 877644 689999999999999999999999 888 777653
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.2e-40 Score=301.32 Aligned_cols=271 Identities=18% Similarity=0.235 Sum_probs=210.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccC--ceeEEeeecc
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAYA 131 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~ 131 (335)
....+|+|+||++.+|+++|+++|+.||.|.+|+++++..+++|||+|.+.++|.+|++.|||..|.| ++|+|.|+..
T Consensus 94 ~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 94 NKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred CceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 34457999999999999999999999999999999888777899999999999999999999999965 4788888753
Q ss_pred CCC--------------------cc-------------------------------------------------------
Q 019811 132 SGQ--------------------RE------------------------------------------------------- 136 (335)
Q Consensus 132 ~~~--------------------~~------------------------------------------------------- 136 (335)
... +.
T Consensus 174 ~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
T TIGR01649 174 TRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRP 253 (481)
T ss_pred CCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcc
Confidence 110 00
Q ss_pred -----------------CCCCcceEEECCCCc-cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHH
Q 019811 137 -----------------DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198 (335)
Q Consensus 137 -----------------~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 198 (335)
...++++|||+|||. .+++++|+++|+.||.|.+++++++ .+|+|||+|.+.++|..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~ 328 (481)
T TIGR01649 254 AYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQL 328 (481)
T ss_pred cccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHH
Confidence 011346899999998 6999999999999999999999865 25899999999999999
Q ss_pred HHHHhCCceeCCeeeEEEEccCCCCCCCCCCCccccc--chhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCH
Q 019811 199 AINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKS--VVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276 (335)
Q Consensus 199 a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~ 276 (335)
|+..|++..+.|+.|+|.+++................ ..+.......+...+.........+++.+|||+|||..+++
T Consensus 329 Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~te 408 (481)
T TIGR01649 329 ALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSE 408 (481)
T ss_pred HHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCH
Confidence 9999999999999999999866543222111000000 01111111111111111111223457789999999999999
Q ss_pred HHHHHHhhhcCCeeeEEEEEecc----cceEEEEeCCHHHHHHHHHhhcCCCcccccCcc
Q 019811 277 LDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (335)
Q Consensus 277 ~~l~~~f~~~G~~~i~~v~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~ 332 (335)
++|+++|+.||...+..+++... +++|||+|.+.++|.+|+..|||+ .|+|+.
T Consensus 409 e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~---~l~~~~ 465 (481)
T TIGR01649 409 EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHH---QLNEPN 465 (481)
T ss_pred HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCC---ccCCCC
Confidence 99999999999545788887644 589999999999999999999999 999885
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.7e-41 Score=313.43 Aligned_cols=258 Identities=30% Similarity=0.479 Sum_probs=215.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
...+|||+|||.++++++|+++|+.||.|.+|++..+. ++|||||+|.+.++|.+|++.+||..+.|+.|.|.....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 45679999999999999999999999999999998764 579999999999999999999999999999999987765
Q ss_pred CCCcc--CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 019811 132 SGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (335)
Q Consensus 132 ~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (335)
+..+. .....++|||+|||.++|+++|+++|+.||.|.++.+.++ .++.++|||||+|.+.++|.+|++.+++..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 54432 3344568999999999999999999999999999999988 46789999999999999999999999999999
Q ss_pred ----CeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhh
Q 019811 210 ----SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 285 (335)
Q Consensus 210 ----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 285 (335)
|+.+.|.++..+........ ...... ...........+|||+||+..+++++|+++|+.
T Consensus 246 ~~~~g~~l~v~~a~~k~er~~~~~-------~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~ 308 (562)
T TIGR01628 246 LAKEGKKLYVGRAQKRAEREAELR-------RKFEEL----------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSE 308 (562)
T ss_pred ccccceeeEeecccChhhhHHHHH-------hhHHhh----------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHh
Confidence 99999988765443211000 000000 000011223478999999999999999999999
Q ss_pred cCCeeeEEEEEecc-----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 286 LGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 286 ~G~~~i~~v~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
|| .|.++++..+ +|+|||+|.+.++|.+|+..|||. .|+|++|.|
T Consensus 309 ~G--~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~---~~~gk~l~V 358 (562)
T TIGR01628 309 CG--EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGR---MLGGKPLYV 358 (562)
T ss_pred cC--CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCC---eeCCceeEE
Confidence 99 5888888654 699999999999999999999999 999999875
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.5e-40 Score=300.84 Aligned_cols=237 Identities=24% Similarity=0.400 Sum_probs=199.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec---CCCCeEEEEEcCHHHHHHHHHHhCCcccc-CceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLF-GQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~g~afv~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~ 128 (335)
+...++|||+|||.++++++|+++|++||.|.+++++++ +++|||||+|.+.++|.+|++.||+..+. |+.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 445689999999999999999999999999999999886 35799999999999999999999999886 78887776
Q ss_pred eccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCC-ceeeEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-
Q 019811 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLTG- 205 (335)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~- 205 (335)
+. ..++|||+|||.++++++|.+.|++++. +..+.+. .....++++|||||+|.+.++|.+|++.|+.
T Consensus 135 S~---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 135 SV---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred cc---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 53 2468999999999999999999999864 4444333 2223457899999999999999999988864
Q ss_pred -ceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhh
Q 019811 206 -KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284 (335)
Q Consensus 206 -~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 284 (335)
..+.|+.|.|.|+.+...... ......++|||+||+..+++++|+++|+
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d~------------------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~ 255 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVDE------------------------------DVMAKVKILYVRNLMTTTTEEIIEKSFS 255 (578)
T ss_pred ceEecCceEEEEeecccccccc------------------------------cccccccEEEEeCCCCCCCHHHHHHHHH
Confidence 467899999999876432110 1112237899999999999999999999
Q ss_pred hc--CCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 285 SL--GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 285 ~~--G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.| | .|..|.+. +++|||+|.+.++|.+|++.|||. .|+|+.|+|
T Consensus 256 ~f~~G--~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~---~i~Gr~I~V 301 (578)
T TIGR01648 256 EFKPG--KVERVKKI--RDYAFVHFEDREDAVKAMDELNGK---ELEGSEIEV 301 (578)
T ss_pred hcCCC--ceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCC---EECCEEEEE
Confidence 99 7 68888776 459999999999999999999999 999999986
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=7.4e-39 Score=293.29 Aligned_cols=277 Identities=25% Similarity=0.393 Sum_probs=212.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
....++|||+|||..+++++|+++|+.||.|.+|+++.++ ++|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999864 46899999999999999995 899999999999987
Q ss_pred eccCCCc---------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 019811 129 AYASGQR---------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (335)
Q Consensus 129 ~~~~~~~---------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 199 (335)
+...... ......++|||+|||..+++++|.++|+.||.|..+.++++..+|.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6432211 1112357899999999999999999999999999999999988889999999999999999999
Q ss_pred HHHhCCceeCCeeeEEEEccCCCCCCCCCCC---------ccc---------------------ccchhccCC-------
Q 019811 200 INDLTGKWLGSRQIRCNWATKGAGNNEDKQS---------SDA---------------------KSVVELTNG------- 242 (335)
Q Consensus 200 ~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~---------~~~---------------------~~~~~~~~~------- 242 (335)
+..|+|..+.|+.|.|.|+............ ... ....+....
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 9999999999999999997532211100000 000 000000000
Q ss_pred CCcCCc----------------CCCCCCC--CCCCCCCCeEEEcCCCcccC----------HHHHHHHhhhcCCeeeEEE
Q 019811 243 SSEDGK----------------ETTNTEA--PENNPQYTTVYVGNLAPEVT----------QLDLHRHFHSLGAGVIEEV 294 (335)
Q Consensus 243 ~~~~~~----------------~~~~~~~--~~~~~~~~~l~v~nlp~~~t----------~~~l~~~f~~~G~~~i~~v 294 (335)
....+. ....... .......++|+|.||....+ .+||++.|++|| .|..|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G--~v~~v 402 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG--GVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC--CeeEE
Confidence 000000 0000000 00234568999999965543 368999999999 47777
Q ss_pred EEe--cccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 295 RVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 295 ~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.+. ...|++||+|.+.++|.+|+..|||+ .|+|+.|.+
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr---~f~gr~i~~ 442 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGR---YFGGKMITA 442 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCc---ccCCeEEEE
Confidence 775 44799999999999999999999999 999999874
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2e-38 Score=294.43 Aligned_cols=269 Identities=17% Similarity=0.250 Sum_probs=206.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhcc------------CCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSST------------GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~------------G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~ 119 (335)
.....++|||+|||.++|+++|.++|..+ +.|..+.+ .+.+|||||+|.+.++|..|+ .|+|..|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~--~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI--NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE--CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 35567899999999999999999999975 24444544 345689999999999999999 5999999
Q ss_pred cCceeEEeeeccCCCc--------------------------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEE
Q 019811 120 FGQPIKVNWAYASGQR--------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (335)
Q Consensus 120 ~g~~l~v~~~~~~~~~--------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~ 173 (335)
.|+.|+|......... ......++|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999754322100 01123468999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCC
Q 019811 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNT 253 (335)
Q Consensus 174 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (335)
+++..+|.++|||||+|.+.++|..|+..|+|..++|+.|.|.++................. .... .. .....
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~---~~~~--~~--~~~~~ 400 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAP---VTLL--AK--ALSQS 400 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccc---cccc--cc--cchhh
Confidence 99988899999999999999999999999999999999999999865443221111100000 0000 00 00000
Q ss_pred CCCCCCCCCCeEEEcCCCcc--c--------CHHHHHHHhhhcCCeeeEEEEEecc---------cceEEEEeCCHHHHH
Q 019811 254 EAPENNPQYTTVYVGNLAPE--V--------TQLDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAA 314 (335)
Q Consensus 254 ~~~~~~~~~~~l~v~nlp~~--~--------t~~~l~~~f~~~G~~~i~~v~~~~~---------~g~afV~f~~~~~a~ 314 (335)
.......+..+|+|.|+... + ..++|+++|++|| .|..|.++++ .|+|||+|.+.++|.
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G--~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~ 478 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG--PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAE 478 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC--CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHH
Confidence 00112345688999999642 1 2368999999999 5888888754 488999999999999
Q ss_pred HHHHhhcCCCcccccCccccC
Q 019811 315 LAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 315 ~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|+..|||. .|+|+.|.|
T Consensus 479 ~A~~~lnGr---~~~gr~v~~ 496 (509)
T TIGR01642 479 KAMEGMNGR---KFNDRVVVA 496 (509)
T ss_pred HHHHHcCCC---EECCeEEEE
Confidence 999999999 999999864
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-39 Score=256.77 Aligned_cols=228 Identities=41% Similarity=0.727 Sum_probs=195.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
....+||||+||+.++||+-|..+|++.|+|.+++++.+ .++|.|+...
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p 51 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAP 51 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCc
Confidence 356689999999999999999999999999999998877 5677776554
Q ss_pred CCccCC--CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 133 GQREDT--SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 133 ~~~~~~--~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
.....+ .....+||+.|.+.++-++|++.|.+||+|.+.+++||..+++++||+||.|.+.++|+.||..|+|.+|++
T Consensus 52 ~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 52 GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 332222 224679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCee
Q 019811 211 RQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290 (335)
Q Consensus 211 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~ 290 (335)
|.|+-+|+.++....... .....++ .....+.+++||++|++..+++++|++.|+.|| .
T Consensus 132 R~IRTNWATRKp~e~n~~----~ltfdeV---------------~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~ 190 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEMNGK----PLTFDEV---------------YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--P 190 (321)
T ss_pred ceeeccccccCccccCCC----CccHHHH---------------hccCCCCCceEEeCCcCccccHHHHHHhcccCC--c
Confidence 999999998876221111 1111111 122334569999999999999999999999999 5
Q ss_pred eEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 291 IEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 291 i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
|.+|++.+++|++||.|++.++|.+|+..+||. +++|..++|
T Consensus 191 I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNnt---ei~G~~VkC 232 (321)
T KOG0148|consen 191 IQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNT---EIGGQLVRC 232 (321)
T ss_pred ceEEEEecccceEEEEecchhhHHHHHHHhcCc---eeCceEEEE
Confidence 999999999999999999999999999999999 999998875
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=259.93 Aligned_cols=275 Identities=23% Similarity=0.401 Sum_probs=210.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
.||||++||++++.++|.++|+.+|+|..+.++.++ ++||+||.|.-.+++.+|+....+..|.|+.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 789999999999999999999999999999998865 3699999999999999999999999999999999988654
Q ss_pred CCcc---------------------C--CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEE
Q 019811 133 GQRE---------------------D--TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189 (335)
Q Consensus 133 ~~~~---------------------~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~ 189 (335)
.... . ..+...|.|+|||+.+...+|..+|+.||.|..+.|++.+ .|.-.|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEE
Confidence 4321 0 1225789999999999999999999999999999999765 45555999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCC------------------Cccccc-c----------hhc-
Q 019811 190 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ------------------SSDAKS-V----------VEL- 239 (335)
Q Consensus 190 f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~------------------~~~~~~-~----------~~~- 239 (335)
|.+..+|..|+..+|+..|+||+|.|.|+..+........ ..+... . ...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 9999999999999999999999999999977664333110 000000 0 000
Q ss_pred cCC----------CCcC------CcCCCC-------C--CCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEE
Q 019811 240 TNG----------SSED------GKETTN-------T--EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (335)
Q Consensus 240 ~~~----------~~~~------~~~~~~-------~--~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v 294 (335)
... .... ...... . ..........+|||+|||+++++++|...|++||.+....+
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~i 324 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAII 324 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEE
Confidence 000 0000 000000 0 00112223489999999999999999999999996444444
Q ss_pred EEecc----cceEEEEeCCHHHHHHHHHhh-----cC-CCcccccCccccC
Q 019811 295 RVQRD----KGFGFVRYSTHAEAALAIQMG-----NT-TQSSYLFGKQMKV 335 (335)
Q Consensus 295 ~~~~~----~g~afV~f~~~~~a~~A~~~l-----~g-~~~~~~~g~~l~v 335 (335)
.+.++ +|+|||.|.+..+|.+++... .| . .++||.|+|
T Consensus 325 V~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~---ll~GR~Lkv 372 (678)
T KOG0127|consen 325 VKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV---LLDGRLLKV 372 (678)
T ss_pred EeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE---EEeccEEee
Confidence 44443 799999999999999999877 23 4 788988875
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=245.44 Aligned_cols=169 Identities=28% Similarity=0.458 Sum_probs=147.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCc-cccC--cee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGR-HLFG--QPI 124 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~-~~~g--~~l 124 (335)
.+.+.-.+||+-||..++|.||+++|++||.|.+|.+++|+. +|||||.|.+.++|.+|+.+|++. ++.| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 345667799999999999999999999999999999999985 589999999999999999998774 5555 678
Q ss_pred EEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019811 125 KVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (335)
Q Consensus 125 ~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 204 (335)
.|+++....+ +...+++|||+-|++.+||.|++++|++||.|+++.|++| ..+.++|+|||+|.+.+-|..|++.||
T Consensus 110 qvk~Ad~E~e--r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 110 QVKYADGERE--RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred eecccchhhh--ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhc
Confidence 8888865443 3345678999999999999999999999999999999999 468999999999999999999999999
Q ss_pred Cce-eC--CeeeEEEEccCCCC
Q 019811 205 GKW-LG--SRQIRCNWATKGAG 223 (335)
Q Consensus 205 ~~~-~~--g~~l~v~~~~~~~~ 223 (335)
+.. +. ..+|.|+|++.++.
T Consensus 187 g~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred cceeeccCCCceEEEecccCCC
Confidence 964 54 46899999988773
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.2e-32 Score=236.39 Aligned_cols=169 Identities=24% Similarity=0.441 Sum_probs=152.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.++ ++|||||+|.+.++|.+|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45567899999999999999999999999999999998875 35899999999999999999999999999999999
Q ss_pred eeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 019811 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (335)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (335)
++.+... ....++|||+|||.++++++|+++|++||.|..+.+++++.++.++++|||+|.+.++|.+|++.|++..
T Consensus 183 ~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 183 YARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9865432 2335689999999999999999999999999999999998899999999999999999999999999998
Q ss_pred eCC--eeeEEEEccCCCC
Q 019811 208 LGS--RQIRCNWATKGAG 223 (335)
Q Consensus 208 ~~g--~~l~v~~~~~~~~ 223 (335)
+.+ +.|.|.++.....
T Consensus 260 ~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cCCCceeEEEEECCcccc
Confidence 865 7899999876543
No 16
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.6e-32 Score=222.03 Aligned_cols=166 Identities=22% Similarity=0.407 Sum_probs=149.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
-|+||||.|.+.+.|+.|+..|..||+|++|.+.+|. ++|||||+|+-++.|..|++.|||..++||.|+|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 3779999999999999999999999999999998875 579999999999999999999999999999999986544
Q ss_pred CCCc--------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019811 132 SGQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (335)
Q Consensus 132 ~~~~--------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (335)
-+.. ++...-+.|||..+.++++++||+..|+.||+|.+|.+-+++..+.++||+|++|.+..+...|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 3322 12233468999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCceeCCeeeEEEEccCC
Q 019811 204 TGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 204 ~~~~~~g~~l~v~~~~~~ 221 (335)
|-..++|..|+|......
T Consensus 273 NlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred chhhcccceEecccccCC
Confidence 999999999999866443
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-32 Score=234.66 Aligned_cols=231 Identities=29% Similarity=0.530 Sum_probs=201.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCcc
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (335)
+|||| +++|+.+|+++|+++|+|.++++.++- +-|||||.|.++++|++|+..+|...+.|++++|.|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~-- 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS-- 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc--
Confidence 58999 999999999999999999999998876 338999999999999999999999999999999999975543
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.+||.||+++++..+|.+.|+.||.|.+|++..+.. | ++|| ||+|++++.|.+|+..+||..+.|+.|.|.
T Consensus 78 ------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 78 ------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred ------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 399999999999999999999999999999999853 4 8999 999999999999999999999999999998
Q ss_pred EccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE
Q 019811 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~ 296 (335)
....+......... .......+++.|++.+++++.|.++|..+| .+.++.+
T Consensus 149 ~~~~~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g--~i~s~~v 199 (369)
T KOG0123|consen 149 LFERKEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYG--SITSVAV 199 (369)
T ss_pred eccchhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccC--cceEEEE
Confidence 87665433222110 111225689999999999999999999999 5888877
Q ss_pred ecc-----cceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 297 QRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 297 ~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
+++ ++++||.|.+.++|..|+..|++. .+++..+-
T Consensus 200 ~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~---~~~~~~~~ 239 (369)
T KOG0123|consen 200 MRDSIGKSKGFGFVNFENPEDAKKAVETLNGK---IFGDKELY 239 (369)
T ss_pred eecCCCCCCCccceeecChhHHHHHHHhccCC---cCCcccee
Confidence 754 799999999999999999999999 88766654
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.4e-31 Score=227.30 Aligned_cols=253 Identities=32% Similarity=0.493 Sum_probs=210.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCcc
Q 019811 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (335)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (335)
|||.||+++++..+|.++|+.||.|.+|++..+. ++|| ||+|.+.++|.+|++.+||..+.|+.|.|.....+..+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 9999999999999999999999999999999876 4689 999999999999999999999999999998887655443
Q ss_pred CCC-----CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019811 137 DTS-----GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (335)
Q Consensus 137 ~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (335)
... .-..+++.+++.+.+++.|...|..+|.+.++.++.+. .+.+++|+||.|++.++|..|+..+++..+++.
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK 236 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCcc
Confidence 322 23578999999999999999999999999999999884 566999999999999999999999999999999
Q ss_pred eeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeee
Q 019811 212 QIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291 (335)
Q Consensus 212 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i 291 (335)
.+.|..+..+........ ... ...............|||.|++..++.+.|++.|+.|| .+
T Consensus 237 ~~~V~~aqkk~e~~~~l~-----------~~~------~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G--eI 297 (369)
T KOG0123|consen 237 ELYVGRAQKKSEREAELK-----------RKF------EQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG--EI 297 (369)
T ss_pred ceeecccccchhhHHHHh-----------hhh------HhhhhhccccccccccccccCccccchhHHHHHHhccc--ce
Confidence 999988766221111000 000 00000111122336799999999999999999999999 57
Q ss_pred EEEEEecc-----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 292 EEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 292 ~~v~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..++++.+ +|++||.|.+.++|.+|+..+||. .++++.|.|
T Consensus 298 ~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~---~i~~k~l~v 343 (369)
T KOG0123|consen 298 TSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGR---LIGGKPLYV 343 (369)
T ss_pred eeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChh---hhcCCchhh
Confidence 77777643 799999999999999999999999 999998764
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.9e-30 Score=223.24 Aligned_cols=159 Identities=31% Similarity=0.494 Sum_probs=139.7
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|.+++|++|+.++.++|||||+|.++++|.+|+..|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE
Q 019811 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~ 296 (335)
|+.+.... ....+|||.|||.++++++|+++|++|| .|..+++
T Consensus 183 ~a~p~~~~-----------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~i 225 (346)
T TIGR01659 183 YARPGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKNI 225 (346)
T ss_pred cccccccc-----------------------------------cccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEEE
Confidence 97642210 0125799999999999999999999999 5777777
Q ss_pred ecc------cceEEEEeCCHHHHHHHHHhhcCCCcccccC--ccccC
Q 019811 297 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKV 335 (335)
Q Consensus 297 ~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g--~~l~v 335 (335)
.++ +++|||+|.+.++|.+|++.||+. .+.+ ++|+|
T Consensus 226 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~~~g~~~~l~V 269 (346)
T TIGR01659 226 LRDKLTGTPRGVAFVRFNKREEAQEAISALNNV---IPEGGSQPLTV 269 (346)
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEE
Confidence 655 489999999999999999999999 7766 45543
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.7e-30 Score=201.81 Aligned_cols=169 Identities=26% Similarity=0.572 Sum_probs=153.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec----CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
+.+-.|||+.|...++.++|++.|.+||.|.+.++++| +++||+||.|.+.++|++||..|||..|++|.|+-.|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 34667999999999999999999999999999999997 46799999999999999999999999999999999999
Q ss_pred ccCCCc-------------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHH
Q 019811 130 YASGQR-------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196 (335)
Q Consensus 130 ~~~~~~-------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a 196 (335)
..+... .....+++||++|++..+++++|++.|+.||.|.+|++.++ +||+||+|++.|.|
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAA 213 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhH
Confidence 887643 23456789999999999999999999999999999999955 68999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEEEccCCCCCCCCC
Q 019811 197 QSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228 (335)
Q Consensus 197 ~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~ 228 (335)
..||-.+|+..+.|+.++|.|.+.........
T Consensus 214 ahAIv~mNntei~G~~VkCsWGKe~~~~~~~~ 245 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWGKEGDDGINNQ 245 (321)
T ss_pred HHHHHHhcCceeCceEEEEeccccCCCCCCch
Confidence 99999999999999999999998877554443
No 21
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=9.8e-29 Score=219.22 Aligned_cols=168 Identities=29% Similarity=0.524 Sum_probs=146.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccC--ceeEEee
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNW 128 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 128 (335)
..++|||+|||..+++++|+++|+.||.|..+++..+. ++|||||+|.+.++|.+|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45679999999999999999999999999999988754 46899999999999999999999999987 5677777
Q ss_pred eccCCCc-------------------------------------------------------------------------
Q 019811 129 AYASGQR------------------------------------------------------------------------- 135 (335)
Q Consensus 129 ~~~~~~~------------------------------------------------------------------------- 135 (335)
+......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 6422200
Q ss_pred ----------------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 019811 136 ----------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (335)
Q Consensus 136 ----------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 199 (335)
.....+.+|||+|||.++++++|+++|++||.|.++++++|+.++.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0011123699999999999999999999999999999999998999999999999999999999
Q ss_pred HHHhCCceeCCeeeEEEEccCCC
Q 019811 200 INDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 200 ~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
+..|+|..++|+.|+|.|...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999987754
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=4e-29 Score=227.00 Aligned_cols=166 Identities=25% Similarity=0.510 Sum_probs=141.3
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.++|||+|||+++++++|+++|..||.|.++.+++|+.++.++|||||+|.+.++|.+|+..|+|..++|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc-
Q 019811 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~- 299 (335)
....... ...........++|||+|||.++++++|+++|+.|| .|.++++.++
T Consensus 187 ~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D~ 240 (612)
T TIGR01645 187 MPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP 240 (612)
T ss_pred ccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEecC
Confidence 2110000 000001112347899999999999999999999999 5888888653
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 -----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|+|||+|.+.++|.+|+..|||. .++|+.|+|
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~---elgGr~LrV 278 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRV 278 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCC---eeCCeEEEE
Confidence 789999999999999999999999 999999986
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.6e-29 Score=213.53 Aligned_cols=265 Identities=24% Similarity=0.409 Sum_probs=194.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
..+|.|+|||+.+.+.+|..+|+.||.|.+|.|.+.+. .|||||+|.+..+|..|++.+|+..|.|++|-|.|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 56799999999999999999999999999999986543 599999999999999999999999999999999998432
Q ss_pred CC------------------------------------------------------------------------------
Q 019811 133 GQ------------------------------------------------------------------------------ 134 (335)
Q Consensus 133 ~~------------------------------------------------------------------------------ 134 (335)
..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 10
Q ss_pred ---------ccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--
Q 019811 135 ---------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-- 203 (335)
Q Consensus 135 ---------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-- 203 (335)
+.+..-..+|||+|||+++++++|.+.|+.||.|.++.++.++.++.++|.|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 000011268999999999999999999999999999999999999999999999999999999999876
Q ss_pred ---CC-ceeCCeeeEEEEccCCCCCCCCCC------CcccccchhccCCCCcCC----cCC----------------CCC
Q 019811 204 ---TG-KWLGSRQIRCNWATKGAGNNEDKQ------SSDAKSVVELTNGSSEDG----KET----------------TNT 253 (335)
Q Consensus 204 ---~~-~~~~g~~l~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~~~----------------~~~ 253 (335)
.| ..++||.|.|..+..+........ ..+.....-...+....+ ... ...
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~l 436 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKL 436 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhh
Confidence 23 568999999998866553211100 000000000000000000 000 001
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHhhh----cCCeeeEEEEEec---------ccceEEEEeCCHHHHHHHHHhh
Q 019811 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS----LGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMG 320 (335)
Q Consensus 254 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~----~G~~~i~~v~~~~---------~~g~afV~f~~~~~a~~A~~~l 320 (335)
..+......+.|.|.|||..+++..|..+... |-......++.+. +.|++|+.|...+.|.+|+..+
T Consensus 437 knpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 437 KNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred cCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 12333344477999999999999998887653 2111222233221 2689999999999999999765
No 24
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.96 E-value=6.5e-27 Score=194.97 Aligned_cols=275 Identities=21% Similarity=0.321 Sum_probs=230.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccC--ceeEEeee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (335)
.++.-.+++|.|+-+.++-+-|..+|++||.|..|.-+.+...-.|+|+|.+.+.|..|...|+|..|.. ++|+|.++
T Consensus 146 ~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 146 GPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred CCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 4556677899999999999999999999999998766655555579999999999999999999998875 46666655
Q ss_pred cc----------CCC--------c------------------------------------------cCCCCcceEEECCC
Q 019811 130 YA----------SGQ--------R------------------------------------------EDTSGHFNIFVGDL 149 (335)
Q Consensus 130 ~~----------~~~--------~------------------------------------------~~~~~~~~l~v~nl 149 (335)
.- +++ . .....+..|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 21 110 0 00011356777887
Q ss_pred Cc-cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCC
Q 019811 150 SP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228 (335)
Q Consensus 150 p~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~ 228 (335)
.. .+|.+.|..+|.-||+|.+|+|++++. .-|+|+|.+...|..|+..|+|..+.|+.|+|.+++.........
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~e 380 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPRE 380 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCC
Confidence 55 589999999999999999999997754 349999999999999999999999999999999999998888888
Q ss_pred CCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeC
Q 019811 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYS 308 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~ 308 (335)
...+.+...++.+....+...++........+++.+|++.|+|..+++|+++..|..-|+..-....+.+++.+|++.+.
T Consensus 381 gq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~ 460 (492)
T KOG1190|consen 381 GQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLE 460 (492)
T ss_pred CCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccC
Confidence 88888888888888888888888888888889999999999999999999999999998633444455678899999999
Q ss_pred CHHHHHHHHHhhcCCCcccccCc-ccc
Q 019811 309 THAEAALAIQMGNTTQSSYLFGK-QMK 334 (335)
Q Consensus 309 ~~~~a~~A~~~l~g~~~~~~~g~-~l~ 334 (335)
+.++|..|+..++++ .+++. .|+
T Consensus 461 sveeA~~ali~~hnh---~lgen~hlR 484 (492)
T KOG1190|consen 461 SVEEAIQALIDLHNH---YLGENHHLR 484 (492)
T ss_pred ChhHhhhhccccccc---cCCCCceEE
Confidence 999999999999999 77765 444
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=2e-28 Score=211.82 Aligned_cols=278 Identities=23% Similarity=0.386 Sum_probs=211.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
......++||+--|+..+++.+|.+||+.+|.|..|.++.++ ++|.|||+|.+.++.-.|+ .|.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 345667889999999999999999999999999999999876 4699999999999999998 79999999999999
Q ss_pred eeeccCCCc----------c-CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHH
Q 019811 127 NWAYASGQR----------E-DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195 (335)
Q Consensus 127 ~~~~~~~~~----------~-~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~ 195 (335)
..+...... . -..+-..|||+||.+++++++|+.+|++||.|..|.+.+|..+|.++||+|++|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 876432211 0 01122239999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCC---Ccc----------cccch----hccCCC---------------
Q 019811 196 AQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ---SSD----------AKSVV----ELTNGS--------------- 243 (335)
Q Consensus 196 a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~---~~~----------~~~~~----~~~~~~--------------- 243 (335)
|.+|+..|||.++.|+.|+|......-....... ..+ ..... ......
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 9999999999999999999976543322111100 000 00000 000000
Q ss_pred --CcCCc----------CCCCCCCCCCCCCCCeEEEcCCCcccCH----------HHHHHHhhhcCCeeeEEEEEeccc-
Q 019811 244 --SEDGK----------ETTNTEAPENNPQYTTVYVGNLAPEVTQ----------LDLHRHFHSLGAGVIEEVRVQRDK- 300 (335)
Q Consensus 244 --~~~~~----------~~~~~~~~~~~~~~~~l~v~nlp~~~t~----------~~l~~~f~~~G~~~i~~v~~~~~~- 300 (335)
...+. .......+....++.|+.+.|+-...++ +||.+.+.+|| .+..|.+.++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g--~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHG--KVCHIFVDKNSA 490 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcC--CeeEEEEccCCC
Confidence 00000 0000001122256678899998554332 68999999999 59999998775
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 301 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 301 g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
|+.||.|.+.+.|..|+.+|||. +|.||-|+
T Consensus 491 g~VYvrc~s~~~A~~a~~alhgr---WF~gr~It 521 (549)
T KOG0147|consen 491 GCVYVRCPSAEAAGTAVKALHGR---WFAGRMIT 521 (549)
T ss_pred ceEEEecCcHHHHHHHHHHHhhh---hhccceeE
Confidence 99999999999999999999999 99999886
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=215.19 Aligned_cols=248 Identities=23% Similarity=0.341 Sum_probs=199.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
...+.++|+|||..+..++|...|..||.|..|.+. ...-.++|.|.++.+|..|++.|.+..+...++.+.|+....
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 344679999999999999999999999999988443 332359999999999999999999999988888877763210
Q ss_pred Cc--------------------------------cC---------------CCCcceEEECCCCccccHHHHHHHhccCC
Q 019811 134 QR--------------------------------ED---------------TSGHFNIFVGDLSPEVTDATLFACFSVYP 166 (335)
Q Consensus 134 ~~--------------------------------~~---------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g 166 (335)
-. .+ ....+.||+.||+++.+.+++...|...|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 00 00 00113499999999999999999999999
Q ss_pred CceeeEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCC
Q 019811 167 SCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGS 243 (335)
Q Consensus 167 ~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (335)
.|.++.|...+.. -.+.|||||+|.+.++|..|+..|+|..++|+.|.|.++.........+
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK--------------- 605 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGK--------------- 605 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccc---------------
Confidence 9999988754321 1256999999999999999999999999999999999997222111110
Q ss_pred CcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc------cceEEEEeCCHHHHHHHH
Q 019811 244 SEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~------~g~afV~f~~~~~a~~A~ 317 (335)
..........|+|+|||+..+..+|+.+|..|| .+.+|++++. +|+|||+|.++.+|.+|+
T Consensus 606 -----------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 606 -----------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFG--QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred -----------ccccccccceeeeeccchHHHHHHHHHHHhccc--ceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 001111246899999999999999999999999 6999999865 799999999999999999
Q ss_pred HhhcCCCcccccCcccc
Q 019811 318 QMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 318 ~~l~g~~~~~~~g~~l~ 334 (335)
.+|.+. .+.||+|-
T Consensus 673 ~al~ST---HlyGRrLV 686 (725)
T KOG0110|consen 673 DALGST---HLYGRRLV 686 (725)
T ss_pred Hhhccc---ceechhhh
Confidence 999988 89999874
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1e-26 Score=211.20 Aligned_cols=218 Identities=20% Similarity=0.297 Sum_probs=165.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCC-ceeEEEee-----cCCCCeEEEEEcCHHHHHHHHHHhCC--ccccCceeEE
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIR-----KDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKV 126 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~~-----~~~~g~afv~f~~~~~A~~a~~~l~~--~~~~g~~l~v 126 (335)
..++|||+|||.++++++|.+.|++++. +.++.+.. .+++|||||+|.+.++|..|++.|+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4678999999999999999999999874 44544432 23579999999999999999988764 4578999999
Q ss_pred eeeccCCCccC--CCCcceEEECCCCccccHHHHHHHhccC--CCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019811 127 NWAYASGQRED--TSGHFNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (335)
Q Consensus 127 ~~~~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (335)
.|+.+...... ....++|||+||+.++++++|+++|+.| |.|.++.++ ++||||+|.+.++|.+|++.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHH
Confidence 99976543322 2345789999999999999999999999 999999776 34899999999999999999
Q ss_pred hCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHH
Q 019811 203 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282 (335)
Q Consensus 203 l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 282 (335)
|++..|.|+.|+|.|+++.............. ............-.....+...++++.|++++.+++.+.++
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~g-------g~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~ 361 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDKKSYVRYTRGTG-------GRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHF 361 (578)
T ss_pred hCCCEECCEEEEEEEccCCCcccccccccccC-------CCcccccccccccCcccCccccccccccccccccccchhhc
Confidence 99999999999999997754321110000000 00000000011112223345689999999999999999999
Q ss_pred hhhcC
Q 019811 283 FHSLG 287 (335)
Q Consensus 283 f~~~G 287 (335)
|..+|
T Consensus 362 f~~~g 366 (578)
T TIGR01648 362 PRMPG 366 (578)
T ss_pred cccCc
Confidence 99988
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=5e-27 Score=175.11 Aligned_cols=172 Identities=32% Similarity=0.599 Sum_probs=153.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
+.....+|||+||+..++++-|+++|-+.|+|.++++.+++ .+||||++|.+.++|+=|+.-||...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34556789999999999999999999999999999998765 46999999999999999999999999999999999
Q ss_pred eeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCcee-eEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 019811 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206 (335)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 206 (335)
.+. ........+.++||+||.+.++|.-|.+.|+.||.+.. -.++++..+|.++|++||.|.+.+.+.+|+..++++
T Consensus 85 kas--~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 85 KAS--AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred ecc--cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 886 22233344578999999999999999999999998765 478888889999999999999999999999999999
Q ss_pred eeCCeeeEEEEccCCCCCC
Q 019811 207 WLGSRQIRCNWATKGAGNN 225 (335)
Q Consensus 207 ~~~g~~l~v~~~~~~~~~~ 225 (335)
.+.++.+.|.|+..+....
T Consensus 163 ~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 163 YLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hhcCCceEEEEEEecCCCc
Confidence 9999999999998766544
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.4e-27 Score=196.79 Aligned_cols=150 Identities=27% Similarity=0.461 Sum_probs=134.8
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-e--CCeeeEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-L--GSRQIRC 215 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~--~g~~l~v 215 (335)
...-++||+-+|..|+|.||+++|++||.|.+|.+++|+.++.++|+|||.|.+.++|.+|+.+|++.. + ....|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 344589999999999999999999999999999999999999999999999999999999999998865 4 3478889
Q ss_pred EEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEE
Q 019811 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 295 (335)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~ 295 (335)
+|++....+... .+.|||+-|+..+||+||+++|++|| .|++|.
T Consensus 112 k~Ad~E~er~~~----------------------------------e~KLFvg~lsK~~te~evr~iFs~fG--~Ied~~ 155 (510)
T KOG0144|consen 112 KYADGERERIVE----------------------------------ERKLFVGMLSKQCTENEVREIFSRFG--HIEDCY 155 (510)
T ss_pred cccchhhhcccc----------------------------------chhhhhhhccccccHHHHHHHHHhhC--ccchhh
Confidence 998775544322 27799999999999999999999999 599999
Q ss_pred Eecc-----cceEEEEeCCHHHHHHHHHhhcCCC
Q 019811 296 VQRD-----KGFGFVRYSTHAEAALAIQMGNTTQ 324 (335)
Q Consensus 296 ~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~ 324 (335)
|+++ ||||||+|.+.+-|..|++.|||..
T Consensus 156 ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 156 ILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred heecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 9886 8999999999999999999999984
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=6.8e-26 Score=207.78 Aligned_cols=168 Identities=29% Similarity=0.500 Sum_probs=141.6
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
...++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999999899999999999999999999996 8999999999999886
Q ss_pred cCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec
Q 019811 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~ 298 (335)
........... .......+..++|||+|||..+++++|+++|+.|| .|..|.+..
T Consensus 166 ~~~~~~~~~~~-----------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~~ 220 (457)
T TIGR01622 166 QAEKNRAAKAA-----------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLHR 220 (457)
T ss_pred chhhhhhhhcc-----------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEE
Confidence 54322111000 00000112258999999999999999999999999 477887763
Q ss_pred ------ccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 299 ------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 299 ------~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.+|+|||+|.+.++|.+|+..|+|. .|+|++|+|
T Consensus 221 d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~---~i~g~~i~v 260 (457)
T TIGR01622 221 DPETGRSKGFGFIQFHDAEEAKEALEVMNGF---ELAGRPIKV 260 (457)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHhcCCc---EECCEEEEE
Confidence 3689999999999999999999999 999999876
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.6e-26 Score=179.19 Aligned_cols=150 Identities=30% Similarity=0.501 Sum_probs=135.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|.|.-||.++|++|++.+|...|+|++++++||+.+|.+-||+||.|.++++|++|+..|||..+..++|+|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEe
Q 019811 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~ 297 (335)
+.+....... ..|||.+||..+|..||..+|+.||. |...++.
T Consensus 118 ARPSs~~Ik~-----------------------------------aNLYvSGlPktMtqkelE~iFs~fGr--IItSRiL 160 (360)
T KOG0145|consen 118 ARPSSDSIKD-----------------------------------ANLYVSGLPKTMTQKELEQIFSPFGR--IITSRIL 160 (360)
T ss_pred ccCChhhhcc-----------------------------------cceEEecCCccchHHHHHHHHHHhhh--hhhhhhh
Confidence 9876544332 46999999999999999999999994 6555555
Q ss_pred cc------cceEEEEeCCHHHHHHHHHhhcCCC
Q 019811 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQ 324 (335)
Q Consensus 298 ~~------~g~afV~f~~~~~a~~A~~~l~g~~ 324 (335)
.+ ||.+||.|+...+|..|+..|||..
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 43 8999999999999999999999983
No 32
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=3.2e-23 Score=174.45 Aligned_cols=165 Identities=22% Similarity=0.290 Sum_probs=136.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHH-hccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVF-SSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f-~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.....+.+||+|||++....+|+++| ++.|.|+.|.++.|. .+|+|.|+|+++|.+++|++.||...+.|++|.|+
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34455679999999999999999999 468899999998874 57999999999999999999999999999999997
Q ss_pred eeccCC------------------------------------------Cc------------------------------
Q 019811 128 WAYASG------------------------------------------QR------------------------------ 135 (335)
Q Consensus 128 ~~~~~~------------------------------------------~~------------------------------ 135 (335)
--.... .+
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 542210 00
Q ss_pred ----------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019811 136 ----------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 136 ----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (335)
-.+.-...+||.||...+....|.+.|.-.|.+..+.+-.|+. |.++|+|.++|..+-.|..|+..+++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 0111125689999999999999999999999999999988865 58899999999999999999999987
Q ss_pred ceeCCeeeEEEE
Q 019811 206 KWLGSRQIRCNW 217 (335)
Q Consensus 206 ~~~~g~~l~v~~ 217 (335)
.-+..++..++.
T Consensus 279 ~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 279 QGLFDRRMTVRL 290 (608)
T ss_pred CCCccccceeec
Confidence 665555555544
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=178.96 Aligned_cols=148 Identities=28% Similarity=0.513 Sum_probs=138.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCccC
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRED 137 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 137 (335)
.|||+|||..+++.+|+.+|++||.|.++.|+++ ||||..++...|+.|++.|+|-.+.|..|.|+.+++++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 4999999999999999999999999999999775 89999999999999999999999999999999998763
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+++++|+|+.+.++..|++..|++||.|..+.|++| |+||.|+..++|..|++.|++.++.|+.++|..
T Consensus 76 -k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 76 -KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred -CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 45578999999999999999999999999999999854 899999999999999999999999999999998
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+...-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 86643
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.9e-24 Score=198.88 Aligned_cols=167 Identities=18% Similarity=0.285 Sum_probs=140.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
...++|||+|||..+++++|+++|+.||.|..+.++.+. ++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999998764 4699999999999999999999999999999999987
Q ss_pred ccCCCc-------------------------cCCCCcceEEECCCCccc----------cHHHHHHHhccCCCceeeEEe
Q 019811 130 YASGQR-------------------------EDTSGHFNIFVGDLSPEV----------TDATLFACFSVYPSCSDARVM 174 (335)
Q Consensus 130 ~~~~~~-------------------------~~~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~g~v~~~~~~ 174 (335)
...... ....++.+|+|.|+.... ..++|+++|.+||.|..|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 432210 001245678999996421 236899999999999999998
Q ss_pred ecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 175 WDQ---KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 175 ~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
++. .++...|++||+|.+.++|.+|+..|+|..|.|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 652 2345678999999999999999999999999999999999765
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=3.4e-25 Score=165.33 Aligned_cols=160 Identities=31% Similarity=0.493 Sum_probs=139.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
.....+|||+||+..++++-|.++|-..|+|..+.+++|+.+..+.||||++|.++++|+.|++-|+...+.|++|+|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEe
Q 019811 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~ 297 (335)
+...... ...+..|||+||.+.+.+..|.+.|+.|| +.+....++
T Consensus 86 as~~~~n----------------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG-~l~~~P~i~ 130 (203)
T KOG0131|consen 86 ASAHQKN----------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFG-VLISPPKIM 130 (203)
T ss_pred ccccccc----------------------------------ccccccccccccCcchhHHHHHHHHHhcc-ccccCCccc
Confidence 8622111 11125799999999999999999999999 344544554
Q ss_pred cc------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 298 ~~------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
++ +|++||.|.+.+.+.+|+..|+|. .+++++++|
T Consensus 131 rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq---~l~nr~itv 171 (203)
T KOG0131|consen 131 RDPDTGNPKGFGFINYASFEASDAAIGSMNGQ---YLCNRPITV 171 (203)
T ss_pred ccccCCCCCCCeEEechhHHHHHHHHHHhccc---hhcCCceEE
Confidence 43 689999999999999999999999 999999875
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2e-24 Score=182.29 Aligned_cols=166 Identities=22% Similarity=0.354 Sum_probs=143.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCC-ceeEEEeec-----CCCCeEEEEEcCHHHHHHHHHHhCC--ccccCcee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRK-----DKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPI 124 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~~~-----~~~g~afv~f~~~~~A~~a~~~l~~--~~~~g~~l 124 (335)
+...++|||+|||..+++++|.+.+++.++ |..|.+..+ +++|||||+|.+...|..|.+.|-. ..+.|+.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 345678999999999999999999999985 777777653 4679999999999999999987644 45579999
Q ss_pred EEeeeccCCCccCCC--CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019811 125 KVNWAYASGQREDTS--GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (335)
Q Consensus 125 ~v~~~~~~~~~~~~~--~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (335)
.|.|+.+........ .-..|||+||+.++|++.|+++|+.||.|++|+.++| ||||.|.+.++|.+|++.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 999998877654432 2357999999999999999999999999999988855 999999999999999999
Q ss_pred hCCceeCCeeeEEEEccCCCCCCC
Q 019811 203 LTGKWLGSRQIRCNWATKGAGNNE 226 (335)
Q Consensus 203 l~~~~~~g~~l~v~~~~~~~~~~~ 226 (335)
+|+..++|..|.|.++++......
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred hcCceecCceEEEEecCChhhhcc
Confidence 999999999999999988765443
No 37
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.91 E-value=8.2e-23 Score=170.66 Aligned_cols=272 Identities=19% Similarity=0.226 Sum_probs=190.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC--CccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~~~ 130 (335)
..+++.|++||||.+++|+||.+++.+||.|..+.+.+.++ .||++|.+.++|..-+.... --.+.|++|.|.++.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch--hhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 34778899999999999999999999999999999988876 89999999999877332221 124456777776652
Q ss_pred cCC------------------------------C-----cc--CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEE
Q 019811 131 ASG------------------------------Q-----RE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (335)
Q Consensus 131 ~~~------------------------------~-----~~--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~ 173 (335)
-.. . .. .+..--.++|.|+-+.+|-+-|..+|++||.|..+.-
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 110 0 00 0011135778999999999999999999999988855
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--CCeeeEEEEccCCCCCCCCC---C--Ccccccchh--------
Q 019811 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL--GSRQIRCNWATKGAGNNEDK---Q--SSDAKSVVE-------- 238 (335)
Q Consensus 174 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~~~~~~~~~---~--~~~~~~~~~-------- 238 (335)
. . ..+.-.|+|+|.+.+.|..|...|+|+.| +.+.|++.|++...-..... . ..++.....
T Consensus 183 F-~---Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 183 F-T---KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred E-e---cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 4 2 12334599999999999999999999877 45778888886644211110 0 000000000
Q ss_pred -----c--------cCCCCcCCcCCCCCCCCCCCC--CCCeEEEcCCCc-ccCHHHHHHHhhhcCCeeeEEEEEeccc-c
Q 019811 239 -----L--------TNGSSEDGKETTNTEAPENNP--QYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDK-G 301 (335)
Q Consensus 239 -----~--------~~~~~~~~~~~~~~~~~~~~~--~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~i~~v~~~~~~-g 301 (335)
. .+...+.+...+......... .+..|-|.||.. .+|.+.|..+|.-|| +|..|++..++ .
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYG--dVqRVkil~nkkd 336 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYG--DVQRVKILYNKKD 336 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhc--ceEEEEeeecCCc
Confidence 0 000000000000000011111 257888899876 689999999999999 69999998765 5
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 302 ~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.|.|.|.+...|.-|+++|+|. .+.|++|+|
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~g~---~l~gk~lrv 367 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLEGH---KLYGKKLRV 367 (492)
T ss_pred ceeeeecchhHHHHHHHHhhcc---eecCceEEE
Confidence 7999999999999999999999 999999986
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=6.1e-23 Score=182.81 Aligned_cols=164 Identities=24% Similarity=0.416 Sum_probs=145.3
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC-------CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-------~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
|||.||++++|.++|...|..+|.|.++.|...+. .|||||+|.++++|..|++.|+|+.+.|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 99999999999999999999999999998876543 39999999999999999999999999999999999872
Q ss_pred CCC------ccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019811 132 SGQ------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 132 ~~~------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (335)
... .......+.|+|.|+|+.++..+++.+|..||.+.+++++.....+.++|||||.|-+..+|..|+.+|.+
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S 677 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS 677 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc
Confidence 221 11122357899999999999999999999999999999997644556799999999999999999999999
Q ss_pred ceeCCeeeEEEEccCCC
Q 019811 206 KWLGSRQIRCNWATKGA 222 (335)
Q Consensus 206 ~~~~g~~l~v~~~~~~~ 222 (335)
..+.||.|.+.|++...
T Consensus 678 THlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 678 THLYGRRLVLEWAKSDN 694 (725)
T ss_pred cceechhhheehhccch
Confidence 99999999999997643
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=4e-23 Score=165.26 Aligned_cols=142 Identities=27% Similarity=0.485 Sum_probs=130.8
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
..|||+|||...++.+|+.+|++||.|..+.|+++ |+||..++...+..|+..|++-.+.|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999944 8999999999999999999999999999999988765
Q ss_pred CCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccc
Q 019811 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 301 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g 301 (335)
.. .+.+|+|+|+.+.++-.+|+..|++||+ +.++.|.++
T Consensus 75 sk-------------------------------------~stkl~vgNis~tctn~ElRa~fe~ygp--viecdivkd-- 113 (346)
T KOG0109|consen 75 SK-------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGP--VIECDIVKD-- 113 (346)
T ss_pred CC-------------------------------------CccccccCCCCccccCHHHhhhhcccCC--ceeeeeecc--
Confidence 21 1267999999999999999999999994 888888866
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 302 ~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
++||+|+-.++|..|+..|+|. +|.|++|+|
T Consensus 114 y~fvh~d~~eda~~air~l~~~---~~~gk~m~v 144 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNT---EFQGKRMHV 144 (346)
T ss_pred eeEEEEeeccchHHHHhccccc---ccccceeee
Confidence 9999999999999999999999 999999986
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2e-23 Score=171.92 Aligned_cols=165 Identities=25% Similarity=0.523 Sum_probs=140.9
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
+.+||+.+.+.+.|+.|+..|.+||+|+++.+.+|+.+++++|||||+|+-.+.|..|++.+||..++||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999854221
Q ss_pred CCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc--
Q 019811 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~-- 299 (335)
.... +......+.....++|||..++++++++||+.+|+.|| .|..|.+-++
T Consensus 194 pQAQ------------------------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~pt 247 (544)
T KOG0124|consen 194 PQAQ------------------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPT 247 (544)
T ss_pred cccc------------------------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccCC
Confidence 1000 00000011112337899999999999999999999999 6999999765
Q ss_pred ----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 ----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|++||+|.+..+...|+..||-. .++|.-|+|
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlF---DLGGQyLRV 284 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRV 284 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchh---hcccceEec
Confidence 799999999999999999999999 899998876
No 41
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.88 E-value=3.1e-20 Score=153.58 Aligned_cols=260 Identities=15% Similarity=0.152 Sum_probs=205.1
Q ss_pred EeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccC--ceeEEeeeccCCC----
Q 019811 61 VGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAYASGQ---- 134 (335)
Q Consensus 61 v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~~---- 134 (335)
|-|--+.+|.+-|+.++...|.|.+|.|++. +.-.|.|+|++.+.|.+|...|||..|.. .+|+|+++++...
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~k 205 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQK 205 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeee
Confidence 3355588999999999999999999988876 44589999999999999999999998863 6889988855210
Q ss_pred ---------------------------------------------------------------------------ccCCC
Q 019811 135 ---------------------------------------------------------------------------REDTS 139 (335)
Q Consensus 135 ---------------------------------------------------------------------------~~~~~ 139 (335)
.....
T Consensus 206 nd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~ 285 (494)
T KOG1456|consen 206 NDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGA 285 (494)
T ss_pred cCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCC
Confidence 00011
Q ss_pred CcceEEECCCCcc-ccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 140 GHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 140 ~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
++..++|.+|... ++-+.|.++|..||.|..|++++.+ .|.|+|++.|..+.++|+..|++..+.|.+|.|.++
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 2367889999865 7789999999999999999999653 467999999999999999999999999999999999
Q ss_pred cCCCCCCCC--CCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE
Q 019811 219 TKGAGNNED--KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (335)
Q Consensus 219 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~ 296 (335)
+........ .......+..+++.....+...+.........+++++|++-|.|..+||+.|.++|..-+ +...++++
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~-v~~~svkv 439 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD-VPPTSVKV 439 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC-CCcceEEe
Confidence 876644332 122233334444444444445555556667778889999999999999999999999876 35677777
Q ss_pred eccc----ceEEEEeCCHHHHHHHHHhhcCCCcccccC
Q 019811 297 QRDK----GFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (335)
Q Consensus 297 ~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~~~~g 330 (335)
...+ ..+.++|++.++|..|+..+|.. .+.+
T Consensus 440 Fp~kserSssGllEfe~~s~Aveal~~~NH~---pi~~ 474 (494)
T KOG1456|consen 440 FPLKSERSSSGLLEFENKSDAVEALMKLNHY---PIEG 474 (494)
T ss_pred ecccccccccceeeeehHHHHHHHHHHhccc---cccC
Confidence 6442 47899999999999999999998 5554
No 42
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=6.4e-20 Score=151.76 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=200.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHH--hCCccccCceeEEeee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS--LNGRHLFGQPIKVNWA 129 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~--l~~~~~~g~~l~v~~~ 129 (335)
.++.+..|.|++|-..++|.+|.+.++.||+|.-|.++..+. .|.|+|++.+.|+.++.. -+...+.|..-.+.++
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r--~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR--QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc--eeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 356677899999999999999999999999998888776654 799999999999998843 3556777888888888
Q ss_pred ccCCC----ccCCCCcceEE--ECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019811 130 YASGQ----REDTSGHFNIF--VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (335)
Q Consensus 130 ~~~~~----~~~~~~~~~l~--v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (335)
+.... .+...++..|. |-|--+.+|.+-|..++...|.|.+|.|.+. +.-.|+|+|++.+.|.+|...|
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhc
Confidence 54322 22333444444 4455567999999999999999999988743 3346999999999999999999
Q ss_pred CCcee--CCeeeEEEEccCCCCCCCCCCCc-------------ccccc----------hhccCCCCc-------------
Q 019811 204 TGKWL--GSRQIRCNWATKGAGNNEDKQSS-------------DAKSV----------VELTNGSSE------------- 245 (335)
Q Consensus 204 ~~~~~--~g~~l~v~~~~~~~~~~~~~~~~-------------~~~~~----------~~~~~~~~~------------- 245 (335)
||..| +.++|+|+|+++....-.+.... +++.. ....+.+..
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 99866 56889999998765211110000 00000 000000000
Q ss_pred ----------CC-cCCCCCCCCCCCCCCCeEEEcCCCc-ccCHHHHHHHhhhcCCeeeEEEEEecc-cceEEEEeCCHHH
Q 019811 246 ----------DG-KETTNTEAPENNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAE 312 (335)
Q Consensus 246 ----------~~-~~~~~~~~~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~i~~v~~~~~-~g~afV~f~~~~~ 312 (335)
.. ........+....+++.++|.+|.- .++.+.|..+|..|| .|..|++++. .|.|.|++.|..+
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk~gtamVemgd~~a 337 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTKPGTAMVEMGDAYA 337 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecccceeEEEcCcHHH
Confidence 00 0001122234556678999999986 688999999999999 6999999987 5899999999999
Q ss_pred HHHHHHhhcCCCcccccCccccC
Q 019811 313 AALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 313 a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.++|+..||+. .+-|.+|.|
T Consensus 338 ver~v~hLnn~---~lfG~kl~v 357 (494)
T KOG1456|consen 338 VERAVTHLNNI---PLFGGKLNV 357 (494)
T ss_pred HHHHHHHhccC---ccccceEEE
Confidence 99999999999 777877754
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=7.5e-21 Score=150.53 Aligned_cols=170 Identities=27% Similarity=0.465 Sum_probs=147.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccc-cC--ceeEEe
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHL-FG--QPIKVN 127 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~ 127 (335)
.+.+.|||+-|...-+|+|++.+|..||.|+++.+.+.. ++|+|||.|.+..+|..||..|+|..- .| ..|.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 366889999999999999999999999999999998854 579999999999999999999999644 34 467777
Q ss_pred eeccCC--------------------------------------------------------------------------
Q 019811 128 WAYASG-------------------------------------------------------------------------- 133 (335)
Q Consensus 128 ~~~~~~-------------------------------------------------------------------------- 133 (335)
++....
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 763221
Q ss_pred --------------------------------------------------------------------------------
Q 019811 134 -------------------------------------------------------------------------------- 133 (335)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (335)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ---------------------CccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCC
Q 019811 134 ---------------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192 (335)
Q Consensus 134 ---------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~ 192 (335)
...+...+++|||-.||.+....||...|-+||.|.+.++..|+.++.++.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00112235899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeeEEEEccCCCC
Q 019811 193 QQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (335)
Q Consensus 193 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 223 (335)
..+|..||..+||..|+=++|+|....++..
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999988776553
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1e-20 Score=166.52 Aligned_cols=263 Identities=21% Similarity=0.323 Sum_probs=197.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcc-----------C-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCcccc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST-----------G-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~-----------G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~ 120 (335)
....+.++|+++|..++++++..+|..- | .+..+.+-. .+++||++|.+.++|..|. .+++..+.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~--~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL--EKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc--cccceeEEecCCCchhhhh-cccchhhC
Confidence 4456789999999999999999999753 3 255555544 4469999999999999987 58899999
Q ss_pred CceeEEeeeccCCC--------------------ccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCC
Q 019811 121 GQPIKVNWAYASGQ--------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG 180 (335)
Q Consensus 121 g~~l~v~~~~~~~~--------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~ 180 (335)
|..+++.-...... .........++|++||..++++.+.++...||.+....++.+..+|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 99888754322211 1122345679999999999999999999999999999999998889
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCC
Q 019811 181 RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 260 (335)
Q Consensus 181 ~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
.++||||.+|.+......|++.|+|..++++.+.|..+.................. .............
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~-----------~~i~~~~~q~~g~ 397 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQV-----------PGIPLLMTQMAGI 397 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccccc-----------ccchhhhcccCCC
Confidence 99999999999999999999999999999999999998776544333222000000 0000000122223
Q ss_pred CCCeEEEcCCC--cccCH--------HHHHHHhhhcCCeeeEEEEEecc---------cceEEEEeCCHHHHHHHHHhhc
Q 019811 261 QYTTVYVGNLA--PEVTQ--------LDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 261 ~~~~l~v~nlp--~~~t~--------~~l~~~f~~~G~~~i~~v~~~~~---------~g~afV~f~~~~~a~~A~~~l~ 321 (335)
+...|.+.|+= .++.+ |+++..|.+|| .+..|.++++ -|..||+|.+.++|.+|+..|+
T Consensus 398 ~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~ 475 (500)
T KOG0120|consen 398 PTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELT 475 (500)
T ss_pred cchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHcc
Confidence 34566666662 22221 46777788999 4888888766 4789999999999999999999
Q ss_pred CCCcccccCcccc
Q 019811 322 TTQSSYLFGKQMK 334 (335)
Q Consensus 322 g~~~~~~~g~~l~ 334 (335)
|+ .|.||.+.
T Consensus 476 Gr---KF~nRtVv 485 (500)
T KOG0120|consen 476 GR---KFANRTVV 485 (500)
T ss_pred Cc---eeCCcEEE
Confidence 99 99999863
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.85 E-value=2e-19 Score=154.32 Aligned_cols=262 Identities=18% Similarity=0.201 Sum_probs=177.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec--CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
.....-|.+++||.++|++||.+||+.++ |+++.+.+. +.+|-|||+|.+.+++++|++ .+-..+..+-|.|-.+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34456689999999999999999999986 556666654 457999999999999999996 57778888888886653
Q ss_pred cCC--------CccCCCCcceEEECCCCccccHHHHHHHhccCCCcee-eEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 019811 131 ASG--------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (335)
Q Consensus 131 ~~~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 201 (335)
... ..........|.+.+||+.+|++||.++|+..-.+.. +.++.+ ..+++.|-|||+|++.+.|+.|+.
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH
Confidence 322 2223345678999999999999999999998755555 334545 456789999999999999999997
Q ss_pred HhCCceeCCeeeEEEEccCCCCCCCC------C---C-----Ccccc---------------c-------c---------
Q 019811 202 DLTGKWLGSRQIRCNWATKGAGNNED------K---Q-----SSDAK---------------S-------V--------- 236 (335)
Q Consensus 202 ~l~~~~~~g~~l~v~~~~~~~~~~~~------~---~-----~~~~~---------------~-------~--------- 236 (335)
. +...|+.+-|.|..+......... . . ..... . .
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred H-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 4 777888888888654221110000 0 0 00000 0 0
Q ss_pred hhc-cCCCC---------c---CCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec---cc
Q 019811 237 VEL-TNGSS---------E---DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---DK 300 (335)
Q Consensus 237 ~~~-~~~~~---------~---~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~---~~ 300 (335)
.+. ..... . ...................++.++||++.++.+|.++|+..-. .-+.|.+.. ..
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~dGr~T 321 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGPDGRAT 321 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCCCCccC
Confidence 000 00000 0 0000000000111122267999999999999999999997642 234444443 36
Q ss_pred ceEEEEeCCHHHHHHHHHh
Q 019811 301 GFGFVRYSTHAEAALAIQM 319 (335)
Q Consensus 301 g~afV~f~~~~~a~~A~~~ 319 (335)
|-|+|+|.+.++|..||..
T Consensus 322 GEAdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 322 GEADVEFATGEDAVGAMGK 340 (510)
T ss_pred CcceeecccchhhHhhhcc
Confidence 8999999999999999854
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.6e-20 Score=139.47 Aligned_cols=157 Identities=20% Similarity=0.329 Sum_probs=131.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC-CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
..+++|||+|||.++.+.+|.++|-+||.|..|.+-.... ..||||+|+++.+|+.|+..-+|-.+.|..|+|+++...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4568899999999999999999999999999988744332 479999999999999999999999999999999997543
Q ss_pred CC-----------------------ccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEE
Q 019811 133 GQ-----------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189 (335)
Q Consensus 133 ~~-----------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~ 189 (335)
.. .......+.|.|++||++.++.+|++...+.|+|-...+.+| |++.|+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVE 156 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeee
Confidence 11 112233478999999999999999999999999998888866 369999
Q ss_pred eCCHHHHHHHHHHhCCcee--CCeeeEEEE
Q 019811 190 FRNQQDAQSAINDLTGKWL--GSRQIRCNW 217 (335)
Q Consensus 190 f~~~~~a~~a~~~l~~~~~--~g~~l~v~~ 217 (335)
|...++.+.|+..|+...+ .|.+..+..
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 9999999999999988765 344444443
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=8.2e-21 Score=150.29 Aligned_cols=208 Identities=25% Similarity=0.365 Sum_probs=150.1
Q ss_pred CceeEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 019811 121 GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (335)
Q Consensus 121 g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 200 (335)
+|.|.|+.+...++. ..+++|||+-|.+.-+|+|++.+|..||.++++.+++. ..|.++|.+||+|.+.-+|..||
T Consensus 2 nrpiqvkpadsesrg---~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG---GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCC---ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHH
Confidence 466777777655433 24578999999999999999999999999999999987 46899999999999999999999
Q ss_pred HHhCCce-eC--CeeeEEEEccCCCCCCCCCCCc--------cc---------------------------ccc------
Q 019811 201 NDLTGKW-LG--SRQIRCNWATKGAGNNEDKQSS--------DA---------------------------KSV------ 236 (335)
Q Consensus 201 ~~l~~~~-~~--g~~l~v~~~~~~~~~~~~~~~~--------~~---------------------------~~~------ 236 (335)
..|+|.. +- ...|.|+|++..+++..++-.. .+ ...
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 9999964 43 4678899987766211100000 00 000
Q ss_pred -------------------hhc----------------------------------------------cCC---CCcCC-
Q 019811 237 -------------------VEL----------------------------------------------TNG---SSEDG- 247 (335)
Q Consensus 237 -------------------~~~----------------------------------------------~~~---~~~~~- 247 (335)
.++ .++ .....
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 000 000 00000
Q ss_pred ---------------------------------cCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEE
Q 019811 248 ---------------------------------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (335)
Q Consensus 248 ---------------------------------~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v 294 (335)
............++++.|||..||....+.||..+|-.||.+....|
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 00000011234567799999999999999999999999996333444
Q ss_pred EEec----ccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 295 RVQR----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 295 ~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.++| +++++||.|+++.+|..|+..|||. .|+-++|+|
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF---QIGMKRLKV 359 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF---QIGMKRLKV 359 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcch---hhhhhhhhh
Confidence 4443 3789999999999999999999999 999999986
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.82 E-value=5.6e-19 Score=137.68 Aligned_cols=159 Identities=18% Similarity=0.398 Sum_probs=137.2
Q ss_pred cceEEEeCCCCCCCHHHHHH----HHhccCCceeEEEeec-CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 56 CRSVYVGNIHTQVTEPLLQE----VFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~----~f~~~G~v~~v~~~~~-~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..||||.||+..+..++|+. +|++||.|.+|...+. +.+|.|||.|.+.+.|..|+..|+|..|.|+.++|.|+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34899999999999999888 9999999999988864 568999999999999999999999999999999999986
Q ss_pred cCCCc-----------------------------------------------cCCCCcceEEECCCCccccHHHHHHHhc
Q 019811 131 ASGQR-----------------------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFS 163 (335)
Q Consensus 131 ~~~~~-----------------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 163 (335)
.++.. ....++..+++.|||...+.+.+..+|.
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFE 168 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHh
Confidence 54210 0123457899999999999999999999
Q ss_pred cCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEEcc
Q 019811 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (335)
Q Consensus 164 ~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 219 (335)
.|.....++++.. ..+.|||+|.+...|..|...+.+..+. ...+.|.+++
T Consensus 169 qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 169 QFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999988843 3568999999999999999999998875 7888887764
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.82 E-value=1.2e-18 Score=135.89 Aligned_cols=185 Identities=19% Similarity=0.263 Sum_probs=140.0
Q ss_pred CcceEEECCCCccccHHHHHH----HhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 140 GHFNIFVGDLSPEVTDATLFA----CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
++.+|||.||+..+..++|++ +|+.||.|..|... .+.+.+|-|||.|++.+.|-.|+..|+|..+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 99999999999887 45688999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCcccccchh-------------ccCCCC---cCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHH
Q 019811 216 NWATKGAGNNEDKQSSDAKSVVE-------------LTNGSS---EDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279 (335)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l 279 (335)
.|++.+..........-...... ..++.. .....+.+. .....+++..+++.|||..++.+.+
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHHH
Confidence 99987664443321100000000 000000 000011111 1344677899999999999999999
Q ss_pred HHHhhhcCCeeeEEEEEecc-cceEEEEeCCHHHHHHHHHhhcCCCccccc-Cccc
Q 019811 280 HRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQM 333 (335)
Q Consensus 280 ~~~f~~~G~~~i~~v~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~~~~-g~~l 333 (335)
..+|+.|.+ ...+++... ++.|||+|.+...|..|...+.|. .+. ...|
T Consensus 164 ~~lf~qf~g--~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~---~it~~~~m 214 (221)
T KOG4206|consen 164 SDLFEQFPG--FKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGF---KITKKNTM 214 (221)
T ss_pred HHHHhhCcc--cceeEeccCCCceeEEecchhhhhHHHhhhhccc---eeccCceE
Confidence 999999984 888888875 689999999999999999999998 554 4443
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=3.4e-19 Score=149.79 Aligned_cols=170 Identities=22% Similarity=0.416 Sum_probs=148.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
+.+.|||++|+.+++++.|++.|.+||.|.++.++++. ++||+||.|.+++...+++. .....+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67889999999999999999999999999999999875 35899999999999988874 44678899999998887
Q ss_pred cCCCccCC---CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 019811 131 ASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (335)
Q Consensus 131 ~~~~~~~~---~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (335)
++...... .....+||++||.+++++++++.|.+||.|..+.++.|..+..+++|+||.|.+++++.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 66543332 245689999999999999999999999999999999999999999999999999999999986 57788
Q ss_pred eCCeeeEEEEccCCCCCCC
Q 019811 208 LGSRQIRCNWATKGAGNNE 226 (335)
Q Consensus 208 ~~g~~l~v~~~~~~~~~~~ 226 (335)
|.|+.+.|..+.++.....
T Consensus 163 ~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ecCceeeEeeccchhhccc
Confidence 9999999999988765443
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1e-17 Score=125.73 Aligned_cols=169 Identities=22% Similarity=0.341 Sum_probs=127.9
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
.++.|||+|||.++-+.+|.++|.+||.|..|.+... .....||||+|++..+|+.|+..-+|-.++|..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4578999999999999999999999999999987632 2456799999999999999999889999999999999987
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~ 299 (335)
...........-. .-... +......-.+..-.....|.|.+||+.-++.||++.+.+-| ++....+.++
T Consensus 82 ggr~s~~~~G~y~-----gggrg----Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD 150 (241)
T KOG0105|consen 82 GGRSSSDRRGSYS-----GGGRG----GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD 150 (241)
T ss_pred CCCcccccccccC-----CCCCC----CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc
Confidence 6542221111000 00000 11111111112222236799999999999999999999999 5776666664
Q ss_pred cceEEEEeCCHHHHHHHHHhhcCC
Q 019811 300 KGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 300 ~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
|.+.|+|...++.+.|+..|...
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccc
Confidence 69999999999999999999877
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.76 E-value=2.1e-18 Score=145.07 Aligned_cols=160 Identities=29% Similarity=0.507 Sum_probs=133.6
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
....+||++|+..++++.|++.|..||+|..+.+++|+.+++++||+||+|++.+...+++. .....++|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45789999999999999999999999999999999999999999999999999999888886 46678999999988887
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~ 299 (335)
+........ .......|||++||.++++++++++|++|| .+..+.++.+
T Consensus 84 ~r~~~~~~~-----------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d 132 (311)
T KOG4205|consen 84 SREDQTKVG-----------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD 132 (311)
T ss_pred Ccccccccc-----------------------------cccceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec
Confidence 755332221 111347899999999999999999999999 5666666533
Q ss_pred ------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 ------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
++++||+|.+.++..+++ ..+-+ .|+|+.+.|
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~---~~~gk~vev 170 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVT-LQKFH---DFNGKKVEV 170 (311)
T ss_pred ccccccccceeeEeccccccceec-cccee---eecCceeeE
Confidence 799999999999999987 44555 788887764
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=5.4e-17 Score=125.49 Aligned_cols=184 Identities=16% Similarity=0.261 Sum_probs=126.7
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CeeeEE
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW-DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIRC 215 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~v 215 (335)
.-++|||.+||.++...||..+|..|-..+...+.. ++.....+-+||+.|.+...|..|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 357999999999999999999999997777665543 2222345679999999999999999999999985 788999
Q ss_pred EEccCCCCCCCCCCCcccccchhc---------------------------cCCCCcCCcCCC-----------------
Q 019811 216 NWATKGAGNNEDKQSSDAKSVVEL---------------------------TNGSSEDGKETT----------------- 251 (335)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~----------------- 251 (335)
++++........+....+.....+ ............
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 987654433322222211110000 000000000000
Q ss_pred -------CCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 252 -------NTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 252 -------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
..+.......+.||||.||..+++|++|+.+|+.|.+-.+..++-......||++|++.+.|..||..|.|.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 000011122236899999999999999999999997534555555555678999999999999999999998
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=9.2e-17 Score=124.21 Aligned_cols=153 Identities=22% Similarity=0.369 Sum_probs=121.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEee-cCC----CCeEEEEEcCHHHHHHHHHHhCCcccc---Cce
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR-KDK----SSYGFIHYFDRRSAAMAILSLNGRHLF---GQP 123 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~-~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~---g~~ 123 (335)
.+...+||||.+||.++...||+.+|..|--.+...+.. ++. +..|||.|.+..+|..|+.+|||..|+ +.+
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 466689999999999999999999999986665554432 222 369999999999999999999999997 788
Q ss_pred eEEeeeccCCCcc-------------------------------------------------------------------
Q 019811 124 IKVNWAYASGQRE------------------------------------------------------------------- 136 (335)
Q Consensus 124 l~v~~~~~~~~~~------------------------------------------------------------------- 136 (335)
|+|++++......
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 9998875432100
Q ss_pred ----------------CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 019811 137 ----------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (335)
Q Consensus 137 ----------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 200 (335)
......+|||.||..+++|++|+.+|+.|.....++|.- ......||++|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHH
Confidence 001125799999999999999999999998877776652 233457999999999999999
Q ss_pred HHhCCcee
Q 019811 201 NDLTGKWL 208 (335)
Q Consensus 201 ~~l~~~~~ 208 (335)
..|.|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99998765
No 55
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=1.9e-16 Score=130.25 Aligned_cols=166 Identities=23% Similarity=0.354 Sum_probs=134.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCcee--------EEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCcccc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLF 120 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~ 120 (335)
.+..+..|||.|||.++|.+++.++|++||.|.+ |++.++.. +|-|++.|...+++..|+..|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3556677999999999999999999999998753 67777653 689999999999999999999999999
Q ss_pred CceeEEeeeccCC-----------------------------------CccCCCCcceEEECCCCcc----cc-------
Q 019811 121 GQPIKVNWAYASG-----------------------------------QREDTSGHFNIFVGDLSPE----VT------- 154 (335)
Q Consensus 121 g~~l~v~~~~~~~-----------------------------------~~~~~~~~~~l~v~nlp~~----~t------- 154 (335)
|+.|+|..+.-.. ........++|.+.|+-.. .+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999998662110 0112234578888888321 22
Q ss_pred HHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 155 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
.++|.+-+.+||.|.+|.+. + ..+.|.+-|.|.+.+.|..|++.|+|++|+||.|......-+
T Consensus 290 kedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 46777889999999999776 2 367889999999999999999999999999999998876543
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=1.2e-18 Score=151.56 Aligned_cols=168 Identities=27% Similarity=0.412 Sum_probs=136.3
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.+++|+.-++-..+.-+|.++|+.+|.|..|.++.|+.++.++|.|||+|.|.+....|+. |.|..+.|.+|.|..+..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH
Confidence 4677777788888899999999999999999999999999999999999999999999995 899999999999987654
Q ss_pred CCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc-
Q 019811 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~- 299 (335)
.+... ..... .........+...|||+||++++++++|+..|++||. |..|.+.++
T Consensus 258 eknr~--a~~s~-------------------a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~--Ie~v~l~~d~ 314 (549)
T KOG0147|consen 258 EKNRA--ANASP-------------------ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK--IENVQLTKDS 314 (549)
T ss_pred HHHHH--Hhccc-------------------cccccccccchhhhhhcccccCchHHHHhhhccCccc--ceeeeecccc
Confidence 33210 00000 0000111112234999999999999999999999994 666666544
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 -----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|++||+|.+.++|.+|+..|||. ++-|+.|+|
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngf---elAGr~ikV 352 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGF---ELAGRLIKV 352 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccc---eecCceEEE
Confidence 799999999999999999999999 999999986
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=4.7e-17 Score=123.64 Aligned_cols=85 Identities=40% Similarity=0.615 Sum_probs=79.6
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
...+++|||+|||.++++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|..|++.|++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87644
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=2.9e-16 Score=119.32 Aligned_cols=81 Identities=25% Similarity=0.451 Sum_probs=74.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
...+++|||+|||.++++++|+++|++||.|.++++..++ ++|||||+|.+.++|+.|++.||+..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4456789999999999999999999999999999998764 468999999999999999999999999999999999
Q ss_pred eccCC
Q 019811 129 AYASG 133 (335)
Q Consensus 129 ~~~~~ 133 (335)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 59
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.70 E-value=4.3e-16 Score=128.21 Aligned_cols=187 Identities=17% Similarity=0.230 Sum_probs=134.5
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCce--------eeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
.-++.|||+|||.++|.+++.++|++||.|. .|++.++ ..|..+|-|++.|-..+++..|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4456799999999999999999999999763 4788888 458999999999999999999999999999999
Q ss_pred eeeEEEEccCCCCCCCCCCCc---ccccchh---ccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcc----cC-----
Q 019811 211 RQIRCNWATKGAGNNEDKQSS---DAKSVVE---LTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE----VT----- 275 (335)
Q Consensus 211 ~~l~v~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~----~t----- 275 (335)
+.|+|..+.......-..... .+..... ............ ..+......++|.+.|+-.. .+
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR---DDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc---cccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 999999876533211111000 0000000 000000000000 11222334489999998321 22
Q ss_pred --HHHHHHHhhhcCCeeeEEEEEe--cccceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 276 --QLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 276 --~~~l~~~f~~~G~~~i~~v~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
.++|++-+++||. +..|.+. .+.|.+.|.|.+.++|..++..|+|+ .|+||+|+
T Consensus 288 dlkedl~eec~K~G~--v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR---~fdgRql~ 345 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQ--VRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR---WFDGRQLT 345 (382)
T ss_pred HHHHHHHHHHHHhCC--cceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe---eecceEEE
Confidence 4677888999994 7777665 55899999999999999999999999 99999985
No 60
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=131.61 Aligned_cols=270 Identities=16% Similarity=0.143 Sum_probs=174.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCce----eEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVE----GCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~----~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
....|..++||...+..+|..+|+...... -+.....+..|.+.|.|.+.+.-+.|++. +...++++.+.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 344578899999999999999998542221 11112233458999999999999999865 4566677777775443
Q ss_pred cCC-------------CccCCCCcceEEECCCCccccHHHHHHHhccC----CCceeeEEeecCCCCCcceEEEEEeCCH
Q 019811 131 ASG-------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVY----PSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (335)
Q Consensus 131 ~~~-------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----g~v~~~~~~~~~~~~~~~g~afv~f~~~ 193 (335)
... ...+...--.|.+++||+++++.++.++|..- |..+.+-+++. .+|+..|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCH
Confidence 221 11111223467889999999999999999632 35556655544 4688999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcc
Q 019811 194 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE 273 (335)
Q Consensus 194 ~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 273 (335)
++|..|+.. +...++-|.|.+-.+............... +.............+...-.......+|.+++||+.
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~----pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSE----PLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccc----cccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 999999975 666677777666555432210000000000 000000000000001111112222478999999999
Q ss_pred cCHHHHHHHhhhcCCeeeEE--EEEe-----cccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 274 VTQLDLHRHFHSLGAGVIEE--VRVQ-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 274 ~t~~~l~~~f~~~G~~~i~~--v~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.+.|||.++|..|- ..+.. |.+. +..|.|||+|.+.++|..|+...+++ .+.+|-|.|
T Consensus 292 AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~---~mk~RYiEv 356 (508)
T KOG1365|consen 292 ATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK---LMKSRYIEV 356 (508)
T ss_pred hhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh---hcccceEEE
Confidence 99999999999875 23333 3332 34689999999999999999998888 666776654
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.3e-16 Score=124.52 Aligned_cols=162 Identities=25% Similarity=0.417 Sum_probs=127.5
Q ss_pred eEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCC
Q 019811 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
.+||++||+.+.+.+|.++|..||.+..+.+. .||+||+|.+..+|..|+..+++..+.|..+.|.|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 58999999999999999999999999998765 3578999999999999999999999999888888887532
Q ss_pred CCCCCCCCcccccchhccCCCCcCCcCC-CCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccc
Q 019811 223 GNNEDKQSSDAKSVVELTNGSSEDGKET-TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 301 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g 301 (335)
..... +..+... ............+.+.|.+++..+.+.+|.+.|+++|. +..... .++
T Consensus 75 ~~~g~----------------~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~--~~~~~~--~~~ 134 (216)
T KOG0106|consen 75 RGRGR----------------PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE--VTYVDA--RRN 134 (216)
T ss_pred cccCC----------------CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC--Cchhhh--hcc
Confidence 21100 0000000 01111122334478999999999999999999999994 444333 567
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 302 ~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.+||+|.+..+|.+|++.|+|. .+.|++|++
T Consensus 135 ~~~v~Fs~~~da~ra~~~l~~~---~~~~~~l~~ 165 (216)
T KOG0106|consen 135 FAFVEFSEQEDAKRALEKLDGK---KLNGRRISV 165 (216)
T ss_pred ccceeehhhhhhhhcchhccch---hhcCceeee
Confidence 9999999999999999999999 999999875
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.7e-16 Score=128.47 Aligned_cols=82 Identities=27% Similarity=0.355 Sum_probs=75.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.....++|+|.|||+...+-||+.+|.+||.|.+|.|+.+. ++||+||.|++++||++|..+|||..+.||+|.|+.+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 44556789999999999999999999999999999999864 5899999999999999999999999999999999998
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
+.+.
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 7664
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.6e-16 Score=123.44 Aligned_cols=149 Identities=28% Similarity=0.470 Sum_probs=127.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC----
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS---- 132 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~---- 132 (335)
..|||++||+.+.+.+|..+|..||.+..+.+ ..||+||+|.+..+|..|+..||+..+.|..+.+.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 35999999999999999999999999988866 3368999999999999999999999999998999988742
Q ss_pred --CCc-----------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 019811 133 --GQR-----------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (335)
Q Consensus 133 --~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 199 (335)
+.. ......+.+.+.+++..+.+.+|.+.|..+|.+..... ..+++||+|...++|.+|
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhc
Confidence 111 11233567899999999999999999999999844433 245799999999999999
Q ss_pred HHHhCCceeCCeeeEEEE
Q 019811 200 INDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 200 ~~~l~~~~~~g~~l~v~~ 217 (335)
+..|++..+.++.|.+..
T Consensus 150 ~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEK 167 (216)
T ss_pred chhccchhhcCceeeecc
Confidence 999999999999999943
No 64
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=7.8e-16 Score=114.80 Aligned_cols=79 Identities=28% Similarity=0.510 Sum_probs=72.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCC
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (335)
-.+.|||+||+..+++.||...|..||++.+|||...+ .|||||+|+++.+|+.|+..|+|..|.|..|+|+++.....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 35779999999999999999999999999999998854 48999999999999999999999999999999999976554
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=2.8e-15 Score=101.66 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=75.7
Q ss_pred CCCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 48 PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 48 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
++..++...+-|||+|||+++|.+++.++|.+||.|..|++-..+ .+|.|||.|++..+|++|++.|+|..+.++.+.|
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 444456778889999999999999999999999999999997766 4699999999999999999999999999999999
Q ss_pred eeecc
Q 019811 127 NWAYA 131 (335)
Q Consensus 127 ~~~~~ 131 (335)
.+..+
T Consensus 90 lyyq~ 94 (124)
T KOG0114|consen 90 LYYQP 94 (124)
T ss_pred EecCH
Confidence 88754
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=2.2e-15 Score=100.74 Aligned_cols=67 Identities=34% Similarity=0.652 Sum_probs=62.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceeEEEeec---CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
|||+|||.++|+++|+++|+.||.|..+++..+ ..+++|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999885 2358999999999999999999999999999885
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.2e-15 Score=116.81 Aligned_cols=84 Identities=27% Similarity=0.477 Sum_probs=80.2
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+..+|.|.||+.+++|++|.++|.+||.|.++.+.+|+.+|.++|||||.|.+.++|.+|++.|+|.-+++-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 019811 218 ATKG 221 (335)
Q Consensus 218 ~~~~ 221 (335)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9874
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.60 E-value=3.1e-14 Score=122.78 Aligned_cols=164 Identities=19% Similarity=0.272 Sum_probs=119.7
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
.....|.+.+||.++|++||.++|+.+ .|..+.+.+ .+|++.|-|||+|.+++++.+|++ .+...+..+.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 344678899999999999999999988 466665554 478999999999999999999997 5888899999999877
Q ss_pred cCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEe-
Q 019811 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ- 297 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~- 297 (335)
.........+... +........|.+++||+.+|++||.++|+..-.+.. -+.+.
T Consensus 84 ~~~e~d~~~~~~g------------------------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~ 138 (510)
T KOG4211|consen 84 GGAEADWVMRPGG------------------------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPM 138 (510)
T ss_pred CCccccccccCCC------------------------CCCCCCCceEEecCCCccCcHHHHHHHhcCCccccc-ceeeec
Confidence 6544322111000 000022367999999999999999999996531111 22222
Q ss_pred ----cccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 298 ----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 298 ----~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+..|-|||.|++.+.|.+|+..- .. .|+-|-|.|
T Consensus 139 d~rgR~tGEAfVqF~sqe~ae~Al~rh-re---~iGhRYIEv 176 (510)
T KOG4211|consen 139 DQRGRPTGEAFVQFESQESAEIALGRH-RE---NIGHRYIEV 176 (510)
T ss_pred cCCCCcccceEEEecCHHHHHHHHHHH-HH---hhccceEEe
Confidence 23588999999999999999653 33 466665543
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.60 E-value=5.1e-14 Score=119.43 Aligned_cols=188 Identities=19% Similarity=0.293 Sum_probs=132.4
Q ss_pred cceEEECCCCccccHHHHHHHh-ccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 141 HFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f-~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
.+.+||+|||++..+.+|+++| ++.|+|..|.++.| .+|+++|.|.|+|++++.+++|++.|+...+.||+|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 4569999999999999999999 56799999999999 578999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCC-----------------------------Ccccc-cchhccCCCCcCCc--------------------C
Q 019811 220 KGAGNNEDKQ-----------------------------SSDAK-SVVELTNGSSEDGK--------------------E 249 (335)
Q Consensus 220 ~~~~~~~~~~-----------------------------~~~~~-~~~~~~~~~~~~~~--------------------~ 249 (335)
......-... ..... +..+....+..... .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 4211000000 00000 00000000000000 0
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE--ec---ccceEEEEeCCHHHHHHHHHhhcCCC
Q 019811 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV--QR---DKGFGFVRYSTHAEAALAIQMGNTTQ 324 (335)
Q Consensus 250 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~--~~---~~g~afV~f~~~~~a~~A~~~l~g~~ 324 (335)
...+......+....+||.||.+.+..+.|++.|.-.|. +..+.+ .+ ++|+|.++|+++-+|..|+..+++.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk--v~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~- 279 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK--VQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ- 279 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhcccee--eeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC-
Confidence 000001112334467999999999999999999999884 555544 33 3799999999999999999999976
Q ss_pred cccccCcccc
Q 019811 325 SSYLFGKQMK 334 (335)
Q Consensus 325 ~~~~~g~~l~ 334 (335)
.+.+++++
T Consensus 280 --g~~~~~~~ 287 (608)
T KOG4212|consen 280 --GLFDRRMT 287 (608)
T ss_pred --CCccccce
Confidence 55555543
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=7.5e-15 Score=98.16 Aligned_cols=70 Identities=37% Similarity=0.769 Sum_probs=66.8
Q ss_pred EEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 144 l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
|||+|||.++++++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788999999999999999999999999999999885
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=9.9e-15 Score=118.49 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=71.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..++ .+|||||+|.+.++|..|+. |+|..|.|+.|+|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 5789999999999999999999999999999999886 46999999999999999995 99999999999999986543
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=102.63 Aligned_cols=78 Identities=27% Similarity=0.489 Sum_probs=71.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
-..+++|||+||...++|+.|+++|+++|+|..|.+-.++. .|||||+|.+.++|..|++-++|..+..+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34678999999999999999999999999999988876654 39999999999999999999999999999999988
Q ss_pred ec
Q 019811 129 AY 130 (335)
Q Consensus 129 ~~ 130 (335)
-.
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.4e-14 Score=94.90 Aligned_cols=67 Identities=31% Similarity=0.600 Sum_probs=60.9
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
|||+|||.++++++|+++|+.||.|..+.+..++. +|+|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998763 68999999999999999999999999999874
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.3e-13 Score=108.62 Aligned_cols=81 Identities=28% Similarity=0.460 Sum_probs=75.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.++|.|.||+.+++|++|.++|.+||.|.+|.+.+++. +|||||.|.+.++|.+|+..|||.-+.+--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 345677899999999999999999999999999999999874 5899999999999999999999999999999999
Q ss_pred eeccC
Q 019811 128 WAYAS 132 (335)
Q Consensus 128 ~~~~~ 132 (335)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=1.1e-13 Score=92.40 Aligned_cols=70 Identities=33% Similarity=0.671 Sum_probs=64.3
Q ss_pred EEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 144 l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
|+|+|||+++++++|.++|+.||.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999998866 88999999999999999999999999999999874
No 76
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3e-13 Score=119.70 Aligned_cols=169 Identities=20% Similarity=0.337 Sum_probs=131.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+-....++|++||..++++.+.++...||++....++.+. ++||||.+|.++.....|+..|||..++++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3445679999999999999999999999999998888765 469999999999999999999999999999999987
Q ss_pred eccCCCccC---------------------CCCcceEEECCCCc--c-cc-------HHHHHHHhccCCCceeeEEeecC
Q 019811 129 AYASGQRED---------------------TSGHFNIFVGDLSP--E-VT-------DATLFACFSVYPSCSDARVMWDQ 177 (335)
Q Consensus 129 ~~~~~~~~~---------------------~~~~~~l~v~nlp~--~-~t-------~~~l~~~f~~~g~v~~~~~~~~~ 177 (335)
+........ ..++..|.+.|+=. + .. .++++..|.+||.|.+|.+.++-
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 654322111 11223333333311 1 11 14566677899999999998772
Q ss_pred C---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 178 K---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 178 ~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
. .....|-.||+|.+.+++.+|++.|+|..|.|+++...|....
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 1 1234567899999999999999999999999999999997653
No 77
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=6.8e-14 Score=98.85 Aligned_cols=81 Identities=26% Similarity=0.458 Sum_probs=76.2
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
.+++|||+||+..++|+.|.++|+.+|+|..|.+-.|+.+..+-|||||+|-+.++|..|+..+++..++.+.|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 34799999999999999999999999999999998898888899999999999999999999999999999999999874
Q ss_pred C
Q 019811 220 K 220 (335)
Q Consensus 220 ~ 220 (335)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 78
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5.7e-14 Score=110.14 Aligned_cols=80 Identities=38% Similarity=0.622 Sum_probs=74.1
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++|||+||+..+..++|++.|+.||+|.+..++.|+.+|+++||+||+|+|.++|.+|++. .+-.|+||+..|+.+...
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhhc
Confidence 5899999999999999999999999999999999999999999999999999999999974 456789999999998774
Q ss_pred C
Q 019811 222 A 222 (335)
Q Consensus 222 ~ 222 (335)
.
T Consensus 92 ~ 92 (247)
T KOG0149|consen 92 G 92 (247)
T ss_pred C
Confidence 3
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.8e-13 Score=112.21 Aligned_cols=103 Identities=29% Similarity=0.433 Sum_probs=86.9
Q ss_pred CCccccCceeEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHH
Q 019811 115 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 194 (335)
Q Consensus 115 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~ 194 (335)
++....|..+....+...+ .....+.|+|+|||+...+-||+.+|.+||.|.+|.|+.+. ..+|||+||+|++.+
T Consensus 73 ~~~~t~g~~~~~~~st~s~---s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~ 147 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSS---SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPA 147 (376)
T ss_pred CCCCCCCCccccCCCCcCC---CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChh
Confidence 4555666666665543332 34455789999999999999999999999999999999873 468999999999999
Q ss_pred HHHHHHHHhCCceeCCeeeEEEEccCCC
Q 019811 195 DAQSAINDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 195 ~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
+|++|.++|+|..+.||+|.|+.+..+-
T Consensus 148 dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 148 DADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred hHHHHHHHhhcceeeceEEEEeccchhh
Confidence 9999999999999999999999987763
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=3.3e-13 Score=91.70 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.+.-++.|||.|||+++|.+++.++|.+||.|..+++-.. ...+|.|||.|++..+|.+|++.|+|..+.++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3455679999999999999999999999999999998744 4568999999999999999999999999999999999
Q ss_pred EccCC
Q 019811 217 WATKG 221 (335)
Q Consensus 217 ~~~~~ 221 (335)
|....
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 87653
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=5e-15 Score=111.05 Aligned_cols=83 Identities=29% Similarity=0.550 Sum_probs=77.7
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
++.-|||+|||+.+||.+|.-.|+.||.+..|.++||+.+|+++||||+.|++..+...|+..|||..+.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCC
Q 019811 220 KGA 222 (335)
Q Consensus 220 ~~~ 222 (335)
...
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 443
No 82
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=103.38 Aligned_cols=79 Identities=30% Similarity=0.488 Sum_probs=72.2
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..+.|||+||+..+++.||..+|..||.+..|+|-+ .+.|||||+|++..+|+.|+..|+|..|+|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 357899999999999999999999999999998875 457899999999999999999999999999999999986
Q ss_pred CCCC
Q 019811 220 KGAG 223 (335)
Q Consensus 220 ~~~~ 223 (335)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6543
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.8e-13 Score=118.02 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCH--HHHHHHHHHhCCccccCceeEEeeecc
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDR--RSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~--~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
...+||||||++.+++++|...|..||.|.+|.|++...+|||||+|.+. .++.+|+..|||..|.|+.|+|..+.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34679999999999999999999999999999999887899999999987 789999999999999999999998754
No 84
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=8.4e-13 Score=113.68 Aligned_cols=121 Identities=28% Similarity=0.437 Sum_probs=102.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec-
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY- 130 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~- 130 (335)
.++|||+|||.++++++|+++|..||.|..+.+..++ .+|+|||.|.+.++|..|+..++|..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6889999999999999999999999999999998764 46999999999999999999999999999999999954
Q ss_pred ---cCCCcc-----------------CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeec
Q 019811 131 ---ASGQRE-----------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD 176 (335)
Q Consensus 131 ---~~~~~~-----------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~ 176 (335)
...... .......+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 211111 1223467899999999999999999999999966665543
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.4e-13 Score=108.56 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=78.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
.++-++|||+-|+.+++|++|++.|+.||.|+.|.+++|..+|+++|||||+|+++.+...|....+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q 019811 218 ATK 220 (335)
Q Consensus 218 ~~~ 220 (335)
...
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 644
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=1.3e-13 Score=105.74 Aligned_cols=87 Identities=30% Similarity=0.496 Sum_probs=80.4
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
.+..+-..|.|.||-+.++.++|..+|++||.|.+|.|++|+.++.++|||||.|.+..+|+.|+++|+|..++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 019811 216 NWATKGA 222 (335)
Q Consensus 216 ~~~~~~~ 222 (335)
.++.-..
T Consensus 88 q~arygr 94 (256)
T KOG4207|consen 88 QMARYGR 94 (256)
T ss_pred hhhhcCC
Confidence 8775543
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=2.1e-12 Score=113.39 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=108.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
.....++|+|-|||..+++++|+.+|+.||+|..|+....+ .|.+||+|.|..+|++|+++|++..+.|+.++-.....
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 45567889999999999999999999999999997665443 48999999999999999999999999999888211111
Q ss_pred CCC----------------ccCCC---CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCC
Q 019811 132 SGQ----------------REDTS---GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192 (335)
Q Consensus 132 ~~~----------------~~~~~---~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~ 192 (335)
... ..... ....+++ .|++..+..-++.++.-+|.+.. +- ++.-...-|+.|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~~ 222 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFAD 222 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhcc
Confidence 000 00001 1123333 38887777666666666666544 21 12222246777877
Q ss_pred HHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 193 QQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 193 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
..++..+.... |..+.+....+.++...
T Consensus 223 ~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 223 NRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred ccchhhcccCC-ceecCCCCceEEecCCC
Confidence 77775555432 55666666666665543
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=7.4e-13 Score=105.84 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC-CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
...+|||+||++.+|+++|+++|+.||.|.+|+|.+++. +++|||+|.++++|+.|+ .|+|..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 457899999999999999999999999999999998864 479999999999999998 6999999999999987654
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=7.2e-13 Score=88.72 Aligned_cols=70 Identities=36% Similarity=0.668 Sum_probs=64.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
+|+|+|||..++.++|+++|+.||.|..+.+..++ .+|+|||+|.+.++|.+|+..+++..+.|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888765 46899999999999999999999999999998763
No 90
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=6.8e-13 Score=107.87 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=70.7
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.++|||+|||+.+++++|+++|+.||.|.++.++++. .++|||||+|.+.++|..|+. |+|..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 4689999999999999999999999999999999874 357899999999999999995 999999999999999765
Q ss_pred C
Q 019811 221 G 221 (335)
Q Consensus 221 ~ 221 (335)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.42 E-value=4.1e-12 Score=109.37 Aligned_cols=144 Identities=28% Similarity=0.422 Sum_probs=110.3
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.++|||+|||..+++++|.++|..||.+..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999999754
Q ss_pred -CCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec
Q 019811 221 -GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (335)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~ 298 (335)
.......... ......................+++.+++..++..++...|..+|. +....+..
T Consensus 195 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 259 (306)
T COG0724 195 ASQPRSELSNN------------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGD--IVRASLPP 259 (306)
T ss_pred ccccccccccc------------cchhhhccccccccccccccceeeccccccccchhHHHHhcccccc--ceeeeccC
Confidence 1111110000 0000000001222233445578999999999999999999999994 54444443
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.9e-13 Score=105.80 Aligned_cols=85 Identities=33% Similarity=0.518 Sum_probs=80.5
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|||++|...+++.-|...|-+||+|..+.++.|-.+++++||+||+|...++|..|+..||+.++.||+|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 019811 220 KGAGN 224 (335)
Q Consensus 220 ~~~~~ 224 (335)
+.+..
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86643
No 93
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=1.7e-12 Score=82.33 Aligned_cols=56 Identities=36% Similarity=0.650 Sum_probs=51.5
Q ss_pred HHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 73 LQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 73 l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
|+++|++||.|.++.+..++ +++|||+|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997776 689999999999999999999999999999999986
No 94
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.38 E-value=1.9e-12 Score=114.10 Aligned_cols=83 Identities=30% Similarity=0.611 Sum_probs=79.8
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
+.+||+|+|+++++++|.++|+..|.|.+++++.|+.+|.++||+|++|.+.++|..|++.|+|.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCC
Q 019811 222 AGN 224 (335)
Q Consensus 222 ~~~ 224 (335)
+..
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 653
No 95
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.4e-12 Score=102.36 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=68.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+..-.+|||+||+..+..++|+++|++||+|.+..++.|+ ++||+||.|+|.++|.+|++.. .-.|+||+..++.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 4556789999999999999999999999999999999876 4699999999999999999764 5688999988887
Q ss_pred ecc
Q 019811 129 AYA 131 (335)
Q Consensus 129 ~~~ 131 (335)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 644
No 96
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=9e-13 Score=101.13 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
...+|.|-||.+-++.++|+.+|++||.|-+|.|.+++ .+|||||.|.+..+|+.|+++|+|..+.|+.|+|.++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 44679999999999999999999999999999998876 36999999999999999999999999999999998763
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5.6e-12 Score=84.79 Aligned_cols=71 Identities=35% Similarity=0.703 Sum_probs=65.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. +++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999988763 68999999999999999999999999999998864
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=5e-12 Score=84.56 Aligned_cols=72 Identities=39% Similarity=0.735 Sum_probs=66.4
Q ss_pred eEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
+|+|+|||..+++++|+++|..||.+..+.+.+++ +.++++|||+|.+.++|.+|+..+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888775 6788999999999999999999999999999988763
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.8e-12 Score=84.35 Aligned_cols=67 Identities=37% Similarity=0.681 Sum_probs=61.7
Q ss_pred EeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 61 VGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 61 v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
|+|||..+++++|+++|+.||.|..+++..++. +|+|||+|.+.++|.+|+..+++..+.|+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988654 6899999999999999999999999999998873
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=3.7e-12 Score=109.99 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=71.0
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCeeeEEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ--QDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....|||+||++.+++++|...|..||.|.++.|++. +| +|||||+|.+. .++.+|+..|+|..|.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34578999999999999999999999999999999944 55 99999999987 68999999999999999999999
Q ss_pred EccC
Q 019811 217 WATK 220 (335)
Q Consensus 217 ~~~~ 220 (335)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8755
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.9e-11 Score=105.46 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=113.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC------CCC---eEEEEEcCHHHHHHHHHHhCC----cc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSS---YGFIHYFDRRSAAMAILSLNG----RH 118 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~g---~afv~f~~~~~A~~a~~~l~~----~~ 118 (335)
.+.-++.||||+||.+++|+.|...|..||.+.-=+-.+.. .+| |+|+.|+++.++..-+.++.- ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 45567889999999999999999999999987433332211 235 999999999998776654321 11
Q ss_pred c-------cCceeEEeeecc-C-----CCccCCCCcceEEECCCCccccHHHHHHHhc-cCCCceeeEEeecCCCCCcce
Q 019811 119 L-------FGQPIKVNWAYA-S-----GQREDTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRG 184 (335)
Q Consensus 119 ~-------~g~~l~v~~~~~-~-----~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g 184 (335)
| ..+.+.|..-.. . .....-++.++|||++||..++.++|..+|+ -||.|..+.|-.|++-+-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 1 122233322110 0 1123345678999999999999999999997 799999999999988888999
Q ss_pred EEEEEeCCHHHHHHHHHH
Q 019811 185 FGFVSFRNQQDAQSAIND 202 (335)
Q Consensus 185 ~afv~f~~~~~a~~a~~~ 202 (335)
-|=|+|.+..+-.+||.+
T Consensus 415 aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceeeecccHHHHHHHhh
Confidence 999999999999999974
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2.9e-12 Score=91.47 Aligned_cols=87 Identities=23% Similarity=0.452 Sum_probs=80.2
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
..+.....|||+++...+++++|.+.|..||+|+.+.+-.|+.+|-.+|||+|+|++.+.|.+|+..+||..+.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 33445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 019811 216 NWATKGA 222 (335)
Q Consensus 216 ~~~~~~~ 222 (335)
.|.-.+.
T Consensus 147 Dw~Fv~g 153 (170)
T KOG0130|consen 147 DWCFVKG 153 (170)
T ss_pred EEEEecC
Confidence 9975543
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=6.6e-12 Score=83.66 Aligned_cols=71 Identities=38% Similarity=0.713 Sum_probs=66.0
Q ss_pred ECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 146 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 146 v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
|+|||..+++++|+++|..||.|..+.+..++.++.++++|||+|.+.++|..|+..+++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778899999999999999999999999999999988763
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=8.5e-12 Score=101.20 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=72.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+-+||||+-|+++++|..|+..|+.||+|+.|.|++++ ++|||||+|++..+...|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 45677999999999999999999999999999999999874 57999999999999999999999999999999987
Q ss_pred ee
Q 019811 128 WA 129 (335)
Q Consensus 128 ~~ 129 (335)
+-
T Consensus 177 vE 178 (335)
T KOG0113|consen 177 VE 178 (335)
T ss_pred ec
Confidence 54
No 105
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.8e-13 Score=102.75 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
..+.-|||+|||++.||.+|.-.|++||.|..|.+++++ ++||||+.|++..+...|+..|||..|.||+|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 455679999999999999999999999999999999986 4689999999999999999999999999999999876
Q ss_pred ccC
Q 019811 130 YAS 132 (335)
Q Consensus 130 ~~~ 132 (335)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 443
No 106
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=1.1e-11 Score=99.12 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=69.9
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|+|+||++.+|+++|+++|+.||.|.++.++++. ..+++|||+|++.+++..|+ .|+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 34799999999999999999999999999999999873 55689999999999999999 599999999999998765
Q ss_pred C
Q 019811 220 K 220 (335)
Q Consensus 220 ~ 220 (335)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.9e-12 Score=99.26 Aligned_cols=81 Identities=30% Similarity=0.527 Sum_probs=74.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec----CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
...++|||++|..++++.-|...|-+||.|..|.+..+ +++||+||+|...++|..|+..||+..+.|++|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999998765 46899999999999999999999999999999999999
Q ss_pred ccCCC
Q 019811 130 YASGQ 134 (335)
Q Consensus 130 ~~~~~ 134 (335)
.+...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 76553
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=8.3e-13 Score=121.11 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=122.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEe----ecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI----RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~----~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
...++||+||+..+.+.+|...|..+|.+..+.+. .++-+|+||+.|..+++|.+|+...++..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 34578999999999999999999999987666554 2334699999999999999999766665554
Q ss_pred cCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
...++|.|.|+..|.++++.+++.+|.+.+++++.. ..|+++|.++|.|.++.++.++....+...+..
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 236899999999999999999999999999987755 468999999999999999999998888777777
Q ss_pred eeeEEEEccC
Q 019811 211 RQIRCNWATK 220 (335)
Q Consensus 211 ~~l~v~~~~~ 220 (335)
+.+.+..+++
T Consensus 805 ~~~~v~vsnp 814 (881)
T KOG0128|consen 805 NNGEVQVSNP 814 (881)
T ss_pred cCccccccCC
Confidence 7777777655
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.29 E-value=8.5e-12 Score=104.46 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=117.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhc---c-CCceeEEEeec---CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSS---T-GPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~---~-G~v~~v~~~~~---~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
---|.+++||+++++.++.+||.. . |.++.|..++. +-+|-|||.|..+++|..|+.. |...++-|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 345788999999999999999963 2 23445555443 3479999999999999999965 33344333333221
Q ss_pred ecc----------------------------CCCccCCCCcceEEECCCCccccHHHHHHHhccCC-Ccee--eEEeecC
Q 019811 129 AYA----------------------------SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSD--ARVMWDQ 177 (335)
Q Consensus 129 ~~~----------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~--~~~~~~~ 177 (335)
++. ...........+|.+++||+..+.++|.++|..|. .|.. +.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 110 00011223356899999999999999999999885 3433 566656
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 178 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..|.+.|-|||+|.+.++|..|....++...++|.|.|-...
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 468899999999999999999999888888888988887653
No 110
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=87.50 Aligned_cols=82 Identities=26% Similarity=0.524 Sum_probs=73.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.-....|||.++-..++|++|.+.|..||+|+.+.+..++. +|||+|+|++.+.|..|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34556799999999999999999999999999999988765 58999999999999999999999999999999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+.-+.+
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 865443
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.27 E-value=5.5e-11 Score=79.86 Aligned_cols=74 Identities=39% Similarity=0.773 Sum_probs=67.7
Q ss_pred eEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
+|+|+|||..+++++|.++|..+|.+..+.+..++.+ .++++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999999877543 6789999999999999999999999999999998864
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.26 E-value=1.2e-10 Score=104.72 Aligned_cols=187 Identities=12% Similarity=0.040 Sum_probs=118.5
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
+.+-+.+++++.++.+++++|... .+.+..+..+...+...|.++|.|....++.+|+.. +...+-+|.+.+.-....
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcc
Confidence 446678899999999999999653 355555555555555578899999999999999874 444555565555433222
Q ss_pred CCCCCCCCCcccc-cchhcc---CCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEE-EEE
Q 019811 222 AGNNEDKQSSDAK-SVVELT---NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VRV 296 (335)
Q Consensus 222 ~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~-v~~ 296 (335)
.......-..... ...... +....++..+.....+.......+|||..||..++..++.++|...- .|++ |.+
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~--~Ved~I~l 467 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA--AVEDFIEL 467 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh--hhhheeEe
Confidence 1110000000000 000000 01111122222222334445568999999999999999999999654 2444 554
Q ss_pred ecc-----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 297 QRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 297 ~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
-+. ++.|||.|..+.++.+|...-+.. .++.|.|+|
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~---y~G~r~irv 508 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKF---YPGHRIIRV 508 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhccccc---ccCceEEEe
Confidence 332 689999999999999998777777 788887765
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=4.3e-11 Score=75.75 Aligned_cols=56 Identities=32% Similarity=0.657 Sum_probs=50.2
Q ss_pred HHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 158 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 158 l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|++.|++..+.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999887442 589999999999999999999999999999999986
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.2e-10 Score=99.10 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=106.1
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCC-C--CCcce---EEEEEeCCHHHHHHHHHHhCCceeCCee
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK-T--GRSRG---FGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~--~~~~g---~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (335)
.-++.|||++||.+++|+.|...|..||.+.. .+.+... . -.++| |+|+.|+++......+.++.- ....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 34578999999999999999999999997643 2332111 1 13566 999999999998877765543 3333
Q ss_pred eEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhh-hcCCeee
Q 019811 213 IRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH-SLGAGVI 291 (335)
Q Consensus 213 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~~~i 291 (335)
+.+..+.+.-.... ............-.. .......+.+||||++||-.++.++|..+|+ .||. |
T Consensus 333 ~yf~vss~~~k~k~---VQIrPW~laDs~fv~---------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg--V 398 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKE---VQIRPWVLADSDFVL---------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG--V 398 (520)
T ss_pred eEEEEecCcccccc---eeEEeeEeccchhhh---------ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc--e
Confidence 33333322211110 000000000000000 0122333459999999999999999999999 8996 5
Q ss_pred EEEEEecc------cceEEEEeCCHHHHHHHHHh
Q 019811 292 EEVRVQRD------KGFGFVRYSTHAEAALAIQM 319 (335)
Q Consensus 292 ~~v~~~~~------~g~afV~f~~~~~a~~A~~~ 319 (335)
..+-|+-| +|.|-|+|.+..+-.+|+++
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 55555443 79999999999999999965
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=5.4e-11 Score=78.96 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=54.1
Q ss_pred HHHHHHHhc----cCCCceeeE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 155 DATLFACFS----VYPSCSDAR-VMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 155 ~~~l~~~f~----~~g~v~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
+++|+++|+ .||.|.++. ++.++.+ +.++|+|||+|.+.++|.+|+..|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567778887 999999995 6666656 889999999999999999999999999999999876
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=2.7e-11 Score=106.96 Aligned_cols=77 Identities=35% Similarity=0.591 Sum_probs=72.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
+.|||||+|+++++++|.++|+..|.|.++++..|+. +||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999998764 689999999999999999999999999999999998654
Q ss_pred C
Q 019811 133 G 133 (335)
Q Consensus 133 ~ 133 (335)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.19 E-value=5.3e-10 Score=100.63 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=62.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCcee-EEEee---cCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIR---KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-v~~~~---~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
......|||..||..+++.++.++|...-.|++ |.+.. ++.++-|||.|..++.+..|...-+...++.+-|+|..
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 344567999999999999999999988766666 66654 34468999999999999999887777788888888865
Q ss_pred e
Q 019811 129 A 129 (335)
Q Consensus 129 ~ 129 (335)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 4
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2e-11 Score=94.70 Aligned_cols=146 Identities=24% Similarity=0.356 Sum_probs=120.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC--CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~--~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
+...+||||.|+-..++|+.|.++|-+-|+|..|.|..++. ..||||.|.++-+..-|++-+||..+.+..+.+.+-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34568899999999999999999999999999999877553 3599999999999999999999999999999887543
Q ss_pred cCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
.... .-|...++++.+.+.|+..|.+..+++..+. +|.++.++|+.+....+.-.++....+....-
T Consensus 86 G~sh------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GNSH------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CCCc------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 2211 1255678899999999999999999998774 47888899999988888888887766655443
Q ss_pred e
Q 019811 211 R 211 (335)
Q Consensus 211 ~ 211 (335)
+
T Consensus 153 ~ 153 (267)
T KOG4454|consen 153 K 153 (267)
T ss_pred C
Confidence 3
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=6.5e-12 Score=115.35 Aligned_cols=219 Identities=20% Similarity=0.224 Sum_probs=168.1
Q ss_pred cceEEEeCCCCCCCHH-HHHHHHhccCCceeEEEeecC---C-CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 56 CRSVYVGNIHTQVTEP-LLQEVFSSTGPVEGCKLIRKD---K-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~-~l~~~f~~~G~v~~v~~~~~~---~-~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
.+..++.++-+..... ..+..|+.+|.|+.|++-..+ . ..++++.+....+++.|. ...+..+.++...+..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCC
Confidence 3446677776665554 678899999999998876522 1 248899999999998886 467888888888888776
Q ss_pred cCCCccCC-------CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019811 131 ASGQREDT-------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (335)
Q Consensus 131 ~~~~~~~~-------~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (335)
++...... ....++|++||+..+.+++|...|..+|.+..+.+......+..+|+||+.|...+.+.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 55432211 12256899999999999999999999998877766644456788999999999999999999865
Q ss_pred CCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHh
Q 019811 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (335)
Q Consensus 204 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 283 (335)
+++.++. ..|+|.|.|+..|.++++.++
T Consensus 730 d~~~~gK----------------------------------------------------~~v~i~g~pf~gt~e~~k~l~ 757 (881)
T KOG0128|consen 730 DSCFFGK----------------------------------------------------ISVAISGPPFQGTKEELKSLA 757 (881)
T ss_pred hhhhhhh----------------------------------------------------hhhheeCCCCCCchHHHHhhc
Confidence 5544441 459999999999999999999
Q ss_pred hhcCCeeeEEEEEe-----cccceEEEEeCCHHHHHHHHHhhcCCCcccccCcc
Q 019811 284 HSLGAGVIEEVRVQ-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (335)
Q Consensus 284 ~~~G~~~i~~v~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~ 332 (335)
.++|. +.++++. +.+|.|+|.|.+..++.++...+++. .+..+.
T Consensus 758 ~~~gn--~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~---~~rE~~ 806 (881)
T KOG0128|consen 758 SKTGN--VTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA---GKRENN 806 (881)
T ss_pred cccCC--ccccchhhhhccccccceeccCCCcchhhhhcccchhh---hhhhcC
Confidence 99994 4444332 34799999999999999988777766 554433
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=6.1e-11 Score=98.42 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=79.2
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
-..+.+.|||..|.+-++.++|.-+|+.||.|.++.+++|+.+|.+.-||||+|++.+++++|.-.|++..|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccC
Q 019811 217 WATK 220 (335)
Q Consensus 217 ~~~~ 220 (335)
|+..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8744
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.10 E-value=2.2e-10 Score=104.34 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=84.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCc
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR 135 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 135 (335)
++|||||+|+..+++.+|.++|+.||.|.+|.++..+ |+|||.+....+|.+|+..|++..+.++.|+|.|+..+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 6899999999999999999999999999999887655 69999999999999999999999999999999999877765
Q ss_pred cCCCC--cceEEECCCCccccHHHHHHHhc
Q 019811 136 EDTSG--HFNIFVGDLSPEVTDATLFACFS 163 (335)
Q Consensus 136 ~~~~~--~~~l~v~nlp~~~t~~~l~~~f~ 163 (335)
.+-.. ...+=|+-||...-.+++..++.
T Consensus 499 se~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 499 SEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 52111 12233445566544444555554
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=5.1e-10 Score=74.23 Aligned_cols=57 Identities=28% Similarity=0.371 Sum_probs=49.3
Q ss_pred HHHHHHHHh----ccCCceeEE-Eeec------CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 70 EPLLQEVFS----STGPVEGCK-LIRK------DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 70 ~~~l~~~f~----~~G~v~~v~-~~~~------~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
+++|+++|+ +||.|.+|. +..+ .++|+|||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 577888888 999999985 4433 24799999999999999999999999999999876
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=1.5e-10 Score=107.08 Aligned_cols=160 Identities=19% Similarity=0.350 Sum_probs=137.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+...+++||++||+..+++.+|+..|..+|.|.+|.|-... ...|+||.|.+...+-.|...+.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 56678899999999999999999999999999998875442 235999999999999999999999999877777776
Q ss_pred eccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
... ....++.+++++|+..+....+...|..||.|..|.+- ....|++|.|.+...+..|+..+.|..+
T Consensus 448 G~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 448 GQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcC
Confidence 644 33456789999999999999999999999999988665 3345999999999999999999999999
Q ss_pred CC--eeeEEEEccCCC
Q 019811 209 GS--RQIRCNWATKGA 222 (335)
Q Consensus 209 ~g--~~l~v~~~~~~~ 222 (335)
+| +.++|.|+....
T Consensus 517 G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 517 GGPPRRLRVDLASPPG 532 (975)
T ss_pred CCCCcccccccccCCC
Confidence 75 678888886644
No 124
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.01 E-value=1.2e-09 Score=86.99 Aligned_cols=162 Identities=29% Similarity=0.443 Sum_probs=124.4
Q ss_pred EEEeCCCCCCCHHH-H--HHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 59 VYVGNIHTQVTEPL-L--QEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 59 v~v~nlp~~~t~~~-l--~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
.+++++-..+..+- | ...|+.|-.+...+++++. .++++|+.|.....-.++-..-++..++-..+++.-....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45555555544433 2 5666666666555555543 4589999998887777776666677776666776544322
Q ss_pred C---CccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 019811 133 G---QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (335)
Q Consensus 133 ~---~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (335)
. ..+-....+.||.+.|..+++.+-|...|.+|-.....++++|+.+|+++||+||.|.+..++..|+..++|..++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 2 2233456689999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred CeeeEEEEccC
Q 019811 210 SRQIRCNWATK 220 (335)
Q Consensus 210 g~~l~v~~~~~ 220 (335)
.+.|+++-+.-
T Consensus 259 srpiklRkS~w 269 (290)
T KOG0226|consen 259 SRPIKLRKSEW 269 (290)
T ss_pred cchhHhhhhhH
Confidence 99998875543
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=91.04 Aligned_cols=78 Identities=18% Similarity=0.465 Sum_probs=70.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHH-hCCccccCceeEEeeec
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS-LNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~-l~~~~~~g~~l~v~~~~ 130 (335)
.+....+|||+||-..+++.+|++.|-+||+|.++.+...+ ++|||+|.+.++|+.|.+. ++...|.|++|+|.|+.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 45677899999999999999999999999999999987765 4999999999999998865 57778899999999998
Q ss_pred c
Q 019811 131 A 131 (335)
Q Consensus 131 ~ 131 (335)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 126
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=97.09 Aligned_cols=79 Identities=27% Similarity=0.548 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC-------CCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-------~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
....++|||+||++.++++.|...|..||+|.+|+|+..++ +.++||.|-+..+|++|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45567799999999999999999999999999999998643 46999999999999999999999999999999
Q ss_pred Eeeecc
Q 019811 126 VNWAYA 131 (335)
Q Consensus 126 v~~~~~ 131 (335)
+.|+..
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999843
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.92 E-value=3.2e-09 Score=96.99 Aligned_cols=79 Identities=22% Similarity=0.430 Sum_probs=73.3
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
+++|||++|+.++++.+|..+|+.||+|.+|.++ .++++|||.+....+|.+|+.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 5899999999999999999999999999999887 6688999999999999999999999999999999999987
Q ss_pred CCCCC
Q 019811 221 GAGNN 225 (335)
Q Consensus 221 ~~~~~ 225 (335)
+....
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 66544
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=5.1e-09 Score=81.04 Aligned_cols=81 Identities=17% Similarity=0.384 Sum_probs=74.7
Q ss_pred cceEEECCCCccccHHHHHHHhccC-CCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
...+++..+|..+.+.++..+|..| |.+..+++-|++.+|.++|||||+|++.+.|.-|-+.||+-.+.++-|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3578999999999999999999998 677888888999999999999999999999999999999999999999999976
Q ss_pred CC
Q 019811 220 KG 221 (335)
Q Consensus 220 ~~ 221 (335)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 65
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.7e-09 Score=88.04 Aligned_cols=80 Identities=21% Similarity=0.423 Sum_probs=73.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCC----eEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g----~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+-..|||..|.+-+|.++|.-+|+.||.|.++.++++..+| ||||+|.+.+++++|.-.|++..|..++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34445679999999999999999999999999999999998764 99999999999999999999999999999999
Q ss_pred eecc
Q 019811 128 WAYA 131 (335)
Q Consensus 128 ~~~~ 131 (335)
++..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8754
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.81 E-value=1.6e-08 Score=78.27 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=68.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc-CCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~-G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
....++++.+|..+.+.++..+|.++ |.|..+++.+++ ++|||||+|++.+.|.-|.+.||+..+.|+.|.+.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34458999999999999999999998 788888887765 4689999999999999999999999999999998876
Q ss_pred ccC
Q 019811 130 YAS 132 (335)
Q Consensus 130 ~~~ 132 (335)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 543
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=84.97 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 259 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.....+|||++|-..+++.+|++.|.+|| .+.++++...+++|||+|.+..+|..|...+-+. + .|+|.+|+|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyG--eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~-l-vI~G~Rl~i 297 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYG--EIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNK-L-VINGFRLKI 297 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcC--CeeeEEeecccccceeeehhhHHHHHHHHhhcce-e-eecceEEEE
Confidence 33458999999999999999999999999 6999999999999999999999999998776553 1 789998875
No 132
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.79 E-value=8.1e-09 Score=87.27 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=131.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEee----cCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~----~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..++.|++++-..+.+.+...++..+|.+....... ..++|++++.|...+.+..|+.........++.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 567899999999999999999999999665554443 2356899999999999999996543335555444433222
Q ss_pred cCC-------CccCCCCcceEE-ECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019811 131 ASG-------QREDTSGHFNIF-VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (335)
Q Consensus 131 ~~~-------~~~~~~~~~~l~-v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (335)
... .+.......+++ +++++..+++++|...|..+|.|..+++..++.++..++++++.|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 211 122223334455 999999999999999999999999999999999999999999999999999999987
Q ss_pred hCCceeCCeeeEEEEccCCC
Q 019811 203 LTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 203 l~~~~~~g~~l~v~~~~~~~ 222 (335)
....+.++.+.+.+.....
T Consensus 247 -~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred -ccCcccCcccccccCCCCc
Confidence 7889999999999887654
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=2.5e-08 Score=88.18 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=75.5
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.++|||.+|...+-..+|+.+|++||.|.-.+++.+..+...+.|+||++.+..+|.+||..|+...+.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 47899999999999999999999999999999998877777889999999999999999999999999999999998765
Q ss_pred CC
Q 019811 221 GA 222 (335)
Q Consensus 221 ~~ 222 (335)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.1e-08 Score=90.44 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=103.7
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
...+..+|+|.|||..+++++|.++|+.||+|+.++.- ...+|.+||+|-|..+|++|++.|++..+.|+.|...
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 34566799999999999999999999999999996543 3557899999999999999999999999999998822
Q ss_pred EccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE
Q 019811 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~ 296 (335)
...... ...... ...+..... +.....+..... ..++.- |++..+..-++..+.-+|. +..-..
T Consensus 146 ~~~~~~----~~~~~~-~~~~~~~~~-------p~a~s~pgg~~~-~~~~g~-l~P~~s~~~~~~~~~~~~~--~~~~~~ 209 (549)
T KOG4660|consen 146 GGARRA----MGLQSG-TSFLNHFGS-------PLANSPPGGWPR-GQLFGM-LSPTRSSILLEHISSVDGS--SPGRET 209 (549)
T ss_pred Cccccc----chhccc-chhhhhccc-------hhhcCCCCCCcC-Ccceee-eccchhhhhhhcchhccCc--cccccc
Confidence 211111 111111 111111111 111111111111 223333 8888877666677777774 322222
Q ss_pred ecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 297 QRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 297 ~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
..-+..-+++|.+..++..+...+ |.
T Consensus 210 ~~~~hq~~~~~~~~~s~a~~~~~~-G~ 235 (549)
T KOG4660|consen 210 PLLNHQRFVEFADNRSYAFSEPRG-GF 235 (549)
T ss_pred cchhhhhhhhhccccchhhcccCC-ce
Confidence 222346778888888885555433 44
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.71 E-value=1.2e-07 Score=65.84 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=68.0
Q ss_pred ceEEECCCCccccHHHHHHHhccC--CCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CeeeEE
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG----SRQIRC 215 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v 215 (335)
++|+|.|+|...|.++|.+++... |...-+.++.|..++.+.|||||.|.+.+.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998653 67788889999888999999999999999999999999998774 455666
Q ss_pred EEccC
Q 019811 216 NWATK 220 (335)
Q Consensus 216 ~~~~~ 220 (335)
.|+..
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66654
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=4.1e-09 Score=82.07 Aligned_cols=137 Identities=21% Similarity=0.259 Sum_probs=101.3
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
...++|||.|+-..++|+-|.++|-..|+|..+.|..++ .++.+ ||||.|+++....-|++.+||..+.++.+.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345799999999999999999999999999999888664 45556 9999999999999999999999999988877654
Q ss_pred cCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec
Q 019811 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~ 298 (335)
.-.... -|...++++.+...|+.-|. +..+++..
T Consensus 85 ~G~sha--------------------------------------------pld~r~~~ei~~~v~s~a~p--~~~~R~~~ 118 (267)
T KOG4454|consen 85 CGNSHA--------------------------------------------PLDERVTEEILYEVFSQAGP--IEGVRIPT 118 (267)
T ss_pred cCCCcc--------------------------------------------hhhhhcchhhheeeecccCC--CCCccccc
Confidence 321100 13445677777777777763 55555543
Q ss_pred -----ccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 299 -----DKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 299 -----~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
++.+.|+++--.-+.-.++....+.
T Consensus 119 ~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 119 DNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred cccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 3567777765555555555555444
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=1.3e-08 Score=94.55 Aligned_cols=149 Identities=19% Similarity=0.304 Sum_probs=124.1
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
.+.+||++||+..+++.+|+..|..+|.+..|.|-+.+ .+...-|+||.|.+...+-.|+..+.+..|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 45789999999999999999999999999999886542 23445689999999999999999898888876655555543
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~ 299 (335)
.+ ....+.+++++|+.-+....|..+|..||+ +..|.+...
T Consensus 450 ~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hg 490 (975)
T KOG0112|consen 450 PK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHG 490 (975)
T ss_pred cc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccC
Confidence 21 112367999999999999999999999995 777777777
Q ss_pred cceEEEEeCCHHHHHHHHHhhcCCCcccccCc
Q 019811 300 KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (335)
Q Consensus 300 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~ 331 (335)
..+|||.|.+...|..|+..|.|. .|+|-
T Consensus 491 q~yayi~yes~~~aq~a~~~~rga---p~G~P 519 (975)
T KOG0112|consen 491 QPYAYIQYESPPAAQAATHDMRGA---PLGGP 519 (975)
T ss_pred CcceeeecccCccchhhHHHHhcC---cCCCC
Confidence 789999999999999999999999 78764
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.64 E-value=1.8e-07 Score=82.96 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=72.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..-+++|||.+|...+...+|+.+|++||.|...+++.+.. +-|+||.+.+.++|.+||+.|+-+.+.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44568899999999999999999999999999999988753 35999999999999999999999999999999998
Q ss_pred eccC
Q 019811 129 AYAS 132 (335)
Q Consensus 129 ~~~~ 132 (335)
+++.
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 7654
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.64 E-value=1.2e-07 Score=83.56 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=65.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec----CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
.......+|||+|||.++++++|.++|..||+|+...|... +...||||+|.+.+++..|+.+ +-..+++++|.|
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~V 361 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNV 361 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEE
Confidence 34445566999999999999999999999999988777542 3337999999999999999976 477888999999
Q ss_pred eeec
Q 019811 127 NWAY 130 (335)
Q Consensus 127 ~~~~ 130 (335)
+--.
T Consensus 362 eek~ 365 (419)
T KOG0116|consen 362 EEKR 365 (419)
T ss_pred Eecc
Confidence 7543
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.60 E-value=2.1e-07 Score=75.86 Aligned_cols=83 Identities=27% Similarity=0.376 Sum_probs=75.0
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
.....|+|.|||..++.++|+++|..||.+..+.+.++ ..|.+.|.|-|.|...++|.+|++.+++..++|+.+.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34468999999999999999999999999999988888 46889999999999999999999999999999999998876
Q ss_pred cCCC
Q 019811 219 TKGA 222 (335)
Q Consensus 219 ~~~~ 222 (335)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 5544
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=4e-07 Score=60.07 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=47.5
Q ss_pred eEEEeCCCCCCCHHHH----HHHHhccC-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 58 SVYVGNIHTQVTEPLL----QEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l----~~~f~~~G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
.|+|.|||.+.+...| +.++..+| .|.+| ..+.|.|.|.+.+.|.+|.+.|+|..+.|.+|.|.+....
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 5899999999887655 55666787 56665 2357999999999999999999999999999999988543
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.57 E-value=3.4e-07 Score=74.66 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.....+|+|.|||+.+++++|.++|..||.+..+-+..++. .|.|-|.|...++|.+|++.++|..+.|+.+++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34446799999999999999999999999988888877664 489999999999999999999999999999998876
Q ss_pred ccC
Q 019811 130 YAS 132 (335)
Q Consensus 130 ~~~ 132 (335)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 443
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.57 E-value=8.3e-08 Score=81.20 Aligned_cols=165 Identities=25% Similarity=0.303 Sum_probs=120.9
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
...++|++++...+.+.+...++..+|......+.........++++++.|...+.+..|+.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 34678999999998888888889999987777666655667889999999999999999998544445666655555444
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeE-EEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV-YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~ 298 (335)
......... ....... ...++ ++.++++++++++|+..|..+| .+..++++.
T Consensus 167 ~~~~~~~n~------------------------~~~~~~~-~s~~~~~~~~~~f~~~~d~~~~~~~~~~--~i~~~r~~~ 219 (285)
T KOG4210|consen 167 RRGLRPKNK------------------------LSRLSSG-PSDTIFFVGELDFSLTRDDLKEHFVSSG--EITSVRLPT 219 (285)
T ss_pred cccccccch------------------------hcccccC-ccccceeecccccccchHHHhhhccCcC--cceeeccCC
Confidence 333111100 0001111 22345 4999999999999999999998 577777764
Q ss_pred c------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 299 D------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 299 ~------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
. +|+|||.|.+...+..++.. .+. .++++.+.+
T Consensus 220 ~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~ 258 (285)
T KOG4210|consen 220 DEESGDSKGFAYVDFSAGNSKKLALND-QTR---SIGGRPLRL 258 (285)
T ss_pred CCCccchhhhhhhhhhhchhHHHHhhc-ccC---cccCccccc
Confidence 3 68999999999999999976 666 788877653
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.44 E-value=6e-07 Score=71.86 Aligned_cols=143 Identities=26% Similarity=0.362 Sum_probs=100.0
Q ss_pred HHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchh
Q 019811 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVE 238 (335)
Q Consensus 159 ~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 238 (335)
...|+.+-.+....++++. -+.-.+++|+.|+......++-..-+++.++...+++.-...-..
T Consensus 117 ~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswed--------------- 180 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWED--------------- 180 (290)
T ss_pred hhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCC---------------
Confidence 4456666666666666663 356678999999888777777665566666666544432211000
Q ss_pred ccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcC----CeeeEEEEEecccceEEEEeCCHHHHH
Q 019811 239 LTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAA 314 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G----~~~i~~v~~~~~~g~afV~f~~~~~a~ 314 (335)
....+-......||-+.|...++++-|-..|.+|- ...+.+-+..+.+|++||.|.+..++.
T Consensus 181 --------------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 181 --------------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred --------------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 00011112236799999999999999999999874 223444455566899999999999999
Q ss_pred HHHHhhcCCCcccccCcccc
Q 019811 315 LAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 315 ~A~~~l~g~~~~~~~g~~l~ 334 (335)
.|+..|+|. .++.|.|+
T Consensus 247 rAmrem~gk---yVgsrpik 263 (290)
T KOG0226|consen 247 RAMREMNGK---YVGSRPIK 263 (290)
T ss_pred HHHHhhccc---ccccchhH
Confidence 999999999 99999876
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.44 E-value=1.5e-07 Score=79.61 Aligned_cols=146 Identities=17% Similarity=0.131 Sum_probs=115.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-------CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-------KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-------~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
.|.|.||.+.+|.+.++.+|...|.|..+.++.+- ....|||.|.|...+..| ..|.+++|-++.|.|.++.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEecC
Confidence 69999999999999999999999999999998742 136899999999999877 4788999999988887663
Q ss_pred cCCCccC-----------------------------------------------------CCCcceEEECCCCccccHHH
Q 019811 131 ASGQRED-----------------------------------------------------TSGHFNIFVGDLSPEVTDAT 157 (335)
Q Consensus 131 ~~~~~~~-----------------------------------------------------~~~~~~l~v~nlp~~~t~~~ 157 (335)
....+.. ..-.+++++.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 3221000 00126688999999999999
Q ss_pred HHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 019811 158 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (335)
Q Consensus 158 l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (335)
+.+.|..+|+|....+- .+....+|.+.|........|+. .+|..+.
T Consensus 168 ~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999777654 44566789999988888888886 4666554
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.42 E-value=1.6e-06 Score=60.30 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=54.9
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec------ccceEEEEeCCHHHHHHHHHhhcCCCcccccCccc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l 333 (335)
+||.|+|+|...|.++|.+++..........+-++- +.|+|||.|.+++.|.+-.+.++|++|..+..+++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 689999999999999999988754333343343332 27999999999999999999999997644554443
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.41 E-value=3.5e-07 Score=77.47 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=111.4
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
..|.|.||.++++.+.+..+|...|.|..+.++.... -......|||.|.|...+..|.. |.+..+-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 3799999999999999999999999999998875321 22356789999999988887764 7777776777666544
Q ss_pred cCCCCCCCCCC----Ccccc-------cchhccCCCCcCCcCCCCCCC-CCC---------CCCCCeEEEcCCCcccCHH
Q 019811 219 TKGAGNNEDKQ----SSDAK-------SVVELTNGSSEDGKETTNTEA-PEN---------NPQYTTVYVGNLAPEVTQL 277 (335)
Q Consensus 219 ~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~l~v~nlp~~~t~~ 277 (335)
........... ..++. ............+..+...-. +.. ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 33222111000 00000 000000000011111100000 111 1112789999999999999
Q ss_pred HHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 278 DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 278 ~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
++.+.|..+|.+......-.....+|.++|........|+. ++|.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gr 211 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGR 211 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcch
Confidence 99999999995333333333445677799988888888874 4565
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.41 E-value=6.1e-07 Score=79.21 Aligned_cols=79 Identities=28% Similarity=0.476 Sum_probs=67.6
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
..|||.|||.+++.++|.++|..||.|+...|......+....||||+|.+.+.+..|+.+ +...++++++.|+-....
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988876543344449999999999999999985 578899999999876553
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.37 E-value=1.8e-06 Score=56.99 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=44.9
Q ss_pred CeEEEcCCCcccCHHH----HHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 263 TTVYVGNLAPEVTQLD----LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~----l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..|+|.|||.+..... |+.++..||+ .+..|. .+.|+|.|.+.+.|.+|.+.|+|. .+.|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v~----~~tAilrF~~~~~A~RA~KRmegE---dVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSVS----GGTAILRFPNQEFAERAQKRMEGE---DVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT-----SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEEe----CCEEEEEeCCHHHHHHHHHhhccc---ccccceEEE
Confidence 3589999999877655 5667779994 666662 579999999999999999999999 888888864
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.37 E-value=8.8e-07 Score=72.48 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=76.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+...+||+|+...++.+++...|+.||.+..+.++.|+..+.++||+||+|.+.+.+..++. |++..+.|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4455789999999999999999999999999999999998888899999999999999999998 999999999999998
Q ss_pred ccCC
Q 019811 218 ATKG 221 (335)
Q Consensus 218 ~~~~ 221 (335)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7654
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.30 E-value=2.8e-07 Score=78.87 Aligned_cols=154 Identities=24% Similarity=0.376 Sum_probs=119.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCc-cccCceeEEeeeccCCCcc
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR-HLFGQPIKVNWAYASGQRE 136 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~~~~~~~ 136 (335)
.+|++||.+.++.++|..+|...-.-.+-.++. ..||+||.+.+..-|.+|++.++|. .+.|+++.+.++-++..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr- 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR- 79 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH-
Confidence 489999999999999999997531100000111 2479999999999999999999985 567999999888665432
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
++.+-|.|+|+...++-+..++..||.+..+..+. +....-..-|+|...+.+..|+..+++..+.+..+.+.
T Consensus 80 ----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 80 ----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred ----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 24588999999999999999999999998886641 11222234567888999999999999999999999998
Q ss_pred EccCC
Q 019811 217 WATKG 221 (335)
Q Consensus 217 ~~~~~ 221 (335)
|-...
T Consensus 153 YiPde 157 (584)
T KOG2193|consen 153 YIPDE 157 (584)
T ss_pred cCchh
Confidence 86543
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.25 E-value=1.6e-07 Score=80.35 Aligned_cols=145 Identities=23% Similarity=0.340 Sum_probs=111.6
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCCeeeEEEEccC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWATK 220 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~~~g~~l~v~~~~~ 220 (335)
+.+|++||.+..+.+++..+|...-.-.+-.++ ...||+||.+.+...|.+|++.++++ .+.|..+.+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 368999999999999999999754211111222 23579999999999999999999986 68999999998876
Q ss_pred CCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE-ecc
Q 019811 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV-QRD 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~-~~~ 299 (335)
+.... +.+-|+|+|+..-++-|..+...||. +..|.. ..+
T Consensus 76 kkqrs-------------------------------------rk~Qirnippql~wevld~Ll~qyg~--ve~~eqvnt~ 116 (584)
T KOG2193|consen 76 KKQRS-------------------------------------RKIQIRNIPPQLQWEVLDSLLAQYGT--VENCEQVNTD 116 (584)
T ss_pred HHHHh-------------------------------------hhhhHhcCCHHHHHHHHHHHHhccCC--HhHhhhhccc
Confidence 54322 55889999999999999999999994 444432 222
Q ss_pred --cceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 300 --KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 300 --~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
.-..-|+|.+.+.+.-|+..|+|. .+.+..++
T Consensus 117 ~etavvnvty~~~~~~~~ai~kl~g~---Q~en~~~k 150 (584)
T KOG2193|consen 117 SETAVVNVTYSAQQQHRQAIHKLNGP---QLENQHLK 150 (584)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcch---Hhhhhhhh
Confidence 234457899999999999999998 67665554
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.23 E-value=4.2e-06 Score=76.39 Aligned_cols=72 Identities=32% Similarity=0.547 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec---------ccceEEEEeCCHHHHHHHHHhhcCCCccccc
Q 019811 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (335)
Q Consensus 259 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 329 (335)
.+..+.|||+||++.++++.|...|..||+ +..++++- ++.|+||-|.+..+|.+|++.|+|. .+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgP--lasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~---iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGP--LASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI---IVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCc--ccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce---eee
Confidence 344578999999999999999999999995 77777752 3679999999999999999999999 888
Q ss_pred CccccC
Q 019811 330 GKQMKV 335 (335)
Q Consensus 330 g~~l~v 335 (335)
+..|++
T Consensus 246 ~~e~K~ 251 (877)
T KOG0151|consen 246 EYEMKL 251 (877)
T ss_pred eeeeee
Confidence 887764
No 154
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.18 E-value=3.2e-06 Score=69.24 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.+.+||+|+.+.+|.+++...|+.||.|..+.+..++. +||+||+|.+.+.+..|+. |+|..+.|+.+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345567899999999999999999999999998888877653 5799999999999999998 99999999999998
Q ss_pred eeccC
Q 019811 128 WAYAS 132 (335)
Q Consensus 128 ~~~~~ 132 (335)
+..-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 76543
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=7.1e-06 Score=58.58 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=39.9
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~ 321 (335)
..|+|.+++..++.++|++.|+.|| .|.+|.+.+....|||.|.+.+.|.+|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG--EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC--CcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 5689999999999999999999999 69999999999999999999999999988764
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=1.3e-05 Score=57.20 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=38.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 115 (335)
+.|.|.|++.+++.++|++.|+.||.|..|.+..... .|||.|.++++|..|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHH
Confidence 4689999999999999999999999999888766543 79999999999999998764
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.92 E-value=1.1e-05 Score=67.25 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=62.8
Q ss_pred ceEEECCCCccccHHHH------HHHhccCCCceeeEEeecCCCC-CcceE--EEEEeCCHHHHHHHHHHhCCceeCCee
Q 019811 142 FNIFVGDLSPEVTDATL------FACFSVYPSCSDARVMWDQKTG-RSRGF--GFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l------~~~f~~~g~v~~~~~~~~~~~~-~~~g~--afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (335)
+-+||-+||+.+..++. .++|..||.|..+.+-+...+. ...+. .||+|.+.++|.+|++..+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 56899999988766652 3789999999998776543221 11222 499999999999999999999999999
Q ss_pred eEEEEccCC
Q 019811 213 IRCNWATKG 221 (335)
Q Consensus 213 l~v~~~~~~ 221 (335)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999998664
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.88 E-value=1.7e-05 Score=66.18 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=73.3
Q ss_pred eEEEeCCCCCCCHHHH------HHHHhccCCceeEEEeecCC-----CCe--EEEEEcCHHHHHHHHHHhCCccccCcee
Q 019811 58 SVYVGNIHTQVTEPLL------QEVFSSTGPVEGCKLIRKDK-----SSY--GFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l------~~~f~~~G~v~~v~~~~~~~-----~g~--afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (335)
-+||-+||+.+..+++ .++|.+||.|..|.+-+..+ .+. .||.|.+.++|.+|+...+|..++|+-|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4799999988877663 46899999999887765431 132 3999999999999999999999999999
Q ss_pred EEeeeccCC-----CccCCCCcceEEECCCCc---cccHHHHHHHh
Q 019811 125 KVNWAYASG-----QREDTSGHFNIFVGDLSP---EVTDATLFACF 162 (335)
Q Consensus 125 ~v~~~~~~~-----~~~~~~~~~~l~v~nlp~---~~t~~~l~~~f 162 (335)
+..|...+- +...-....+.|+.---+ ..+.++|...=
T Consensus 196 katYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 196 KATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred eeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 998875431 111112224566533222 35667766543
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.79 E-value=7.4e-05 Score=60.27 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCccccCceeEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcce
Q 019811 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRG 184 (335)
Q Consensus 105 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g 184 (335)
.-|..|...|++....|+.++|.|+.. ..|+|.||...++.+.+...|+.||++....+..| ..++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccc
Confidence 346677778999999999999999964 26999999999999999999999999988877766 4567888
Q ss_pred EEEEEeCCHHHHHHHHHHhCC
Q 019811 185 FGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 185 ~afv~f~~~~~a~~a~~~l~~ 205 (335)
-++|.|...-.|.+|...+..
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cchhhhhcchhHHHHHHHhcc
Confidence 899999999999999987743
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.74 E-value=8.9e-05 Score=45.65 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=42.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHH
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~ 111 (335)
+.|-|.|.|.+.. +++...|..||.|..+.+- ......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 5688999998775 5566688889999987774 33458999999999999985
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=0.00012 Score=45.14 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=43.9
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHH
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~ 317 (335)
+.|-|.+.+....+. +...|..|| .|..+.+......++|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fG--eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFG--EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcC--CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 568889999776654 556888999 6999999977889999999999999985
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.64 E-value=3.1e-05 Score=62.38 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=61.1
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCC--------CCc----ceEEEEEeCCHHHHHHHHHHhCCce
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT--------GRS----RGFGFVSFRNQQDAQSAINDLTGKW 207 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~--------~~~----~g~afv~f~~~~~a~~a~~~l~~~~ 207 (335)
....||+++||+.+....|+++|+.||.|-.|.+-....+ |.+ ..-|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999988654333 222 2247999999999999999999999
Q ss_pred eCCee
Q 019811 208 LGSRQ 212 (335)
Q Consensus 208 ~~g~~ 212 (335)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.63 E-value=3.4e-05 Score=62.10 Aligned_cols=69 Identities=28% Similarity=0.365 Sum_probs=59.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCC----------------CeEEEEEcCHHHHHHHHHHhCCcc
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----------------SYGFIHYFDRRSAAMAILSLNGRH 118 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----------------g~afv~f~~~~~A~~a~~~l~~~~ 118 (335)
..-.||+++||+.+...-|+++|+.||.|-.|.+-..... .-|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999888653211 257899999999999999999999
Q ss_pred ccCce
Q 019811 119 LFGQP 123 (335)
Q Consensus 119 ~~g~~ 123 (335)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.57 E-value=0.00016 Score=61.28 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCcee--------EEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHL 119 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~ 119 (335)
..+...+|||-+||..+++++|.++|.++|.|.. |++.+++ .++-|.|.|.+...|..|+..+++..|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 4566678999999999999999999999998743 4454544 358999999999999999999999999
Q ss_pred cCceeEEeeeccCC
Q 019811 120 FGQPIKVNWAYASG 133 (335)
Q Consensus 120 ~g~~l~v~~~~~~~ 133 (335)
.+.+|+|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998876544
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.54 E-value=9e-05 Score=62.82 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=75.7
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCce--------eeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
....++||-+||..+++.+|.+.|..+|.|. .+.+.++++++.+++-|.|.|.+...|..|+.-+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3446899999999999999999999998774 46777888999999999999999999999999999999999
Q ss_pred eeeEEEEccCCCC
Q 019811 211 RQIRCNWATKGAG 223 (335)
Q Consensus 211 ~~l~v~~~~~~~~ 223 (335)
.+|+|..+.....
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999988876653
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.51 E-value=0.00013 Score=63.18 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc-------------------cceEEEEeCCHHHHHHHHH
Q 019811 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------------------KGFGFVRYSTHAEAALAIQ 318 (335)
Q Consensus 258 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~-------------------~g~afV~f~~~~~a~~A~~ 318 (335)
...++++|.+.|||.+-.-+.|.++|..+| .|..|+|.+. +-+|+|+|++.+.|.+|.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G--~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVG--SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhccc--ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344669999999999999999999999999 6899998754 4589999999999999998
Q ss_pred hhcCC
Q 019811 319 MGNTT 323 (335)
Q Consensus 319 ~l~g~ 323 (335)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 88655
No 167
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.50 E-value=0.00049 Score=45.68 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=42.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~ 116 (335)
|+.....+|+ .|..+...||.++|+.||.| .|.-+.+. .|||...+.+.|..++..++.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 3344445666 99999999999999999999 44444554 599999999999999887753
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.45 E-value=0.00076 Score=47.41 Aligned_cols=72 Identities=21% Similarity=0.127 Sum_probs=51.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEE-Ee----------ecCCCCeEEEEEcCHHHHHHHHHHhCCccccCce-
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCK-LI----------RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP- 123 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~-~~----------~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~- 123 (335)
.+.|.|-|.|.. ....|.+.|++||.|.+.. +. .....+...|.|.++.+|.+||. .||..+.|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456999999998 5788999999999987764 10 11234699999999999999995 6999998754
Q ss_pred eEEeee
Q 019811 124 IKVNWA 129 (335)
Q Consensus 124 l~v~~~ 129 (335)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 445555
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.42 E-value=0.00047 Score=56.74 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=52.5
Q ss_pred HHHHHHHHhccCCceeEEEeecCCC-----CeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 70 EPLLQEVFSSTGPVEGCKLIRKDKS-----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 70 ~~~l~~~f~~~G~v~~v~~~~~~~~-----g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
++++.+-|++||.|..|.|+-..+. --.||+|...++|.+|+-.|||.+|+|+.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5778889999999999888765432 357999999999999999999999999999988763
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.36 E-value=0.0006 Score=56.14 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHHhccCCCceeeEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCC
Q 019811 155 DATLFACFSVYPSCSDARVMWDQKTGRS-RGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 155 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
++++.+.+.+||.|..|.|..++..... ..-.||+|...+.|.+|+-.|||+.|+|+.++..|.+..+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 6788899999999999988766433222 2347999999999999999999999999999998876543
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.00071 Score=54.76 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCccc
Q 019811 195 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 274 (335)
Q Consensus 195 ~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 274 (335)
-|..|...|++....|+.++|.|+.. ..|+|.||...+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchhh
Confidence 46677788999999999999999976 459999999999
Q ss_pred CHHHHHHHhhhcCCeeeEEEEEec---ccceEEEEeCCHHHHHHHHHhhc
Q 019811 275 TQLDLHRHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 275 t~~~l~~~f~~~G~~~i~~v~~~~---~~g~afV~f~~~~~a~~A~~~l~ 321 (335)
+-+.+...|+.||.++..-+.+.. ..+-++|+|.....|.+|+..++
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 999999999999963333333332 24678999999999999998773
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.35 E-value=0.00013 Score=59.06 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHHh-ccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 71 PLLQEVFS-STGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 71 ~~l~~~f~-~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
++|...|+ +||.|+++++..+.. .|-+||.|...++|++|+..||+.++.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 899999987766542 5789999999999999999999999999999988763
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.28 E-value=0.00034 Score=63.10 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=63.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHh-ccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCcccc---CceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFS-STGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF---GQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 127 (335)
....+..|+|.||-...|...|+.++. ..|.|.+.|| ++-+..|||.|.+.++|...+.+|||..|. ++.|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 455677899999999999999999998 5667888866 444457999999999999999999998875 4666666
Q ss_pred eec
Q 019811 128 WAY 130 (335)
Q Consensus 128 ~~~ 130 (335)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 653
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.001 Score=59.73 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=62.9
Q ss_pred CcceEEECCCCccc------cHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-CCee
Q 019811 140 GHFNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQ 212 (335)
Q Consensus 140 ~~~~l~v~nlp~~~------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~ 212 (335)
-...|+|.|+|.-- -..-|..+|+++|.+....++.+..+ ..+||.|++|.+..+|..|++.|||..+ .+++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34689999998631 23456688999999999999988655 4999999999999999999999999887 4677
Q ss_pred eEEEEc
Q 019811 213 IRCNWA 218 (335)
Q Consensus 213 l~v~~~ 218 (335)
..|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777643
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.24 E-value=0.0026 Score=40.13 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=44.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcc----CCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHh
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l 114 (335)
..|+|+|+. +++.++|..+|..| ++. .|.-+.+.+ |=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 359999985 48899999999999 544 676677765 999999999999999764
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.16 E-value=0.0022 Score=45.07 Aligned_cols=64 Identities=28% Similarity=0.327 Sum_probs=47.1
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEE-------------EecccceEEEEeCCHHHHHHHHHhhcCCCccccc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-------------VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~-------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 329 (335)
..|.|-+.|+. ....|.+.|+.|| .|.+.. ......+..|+|++..+|.+|+ .-||. .|+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G--~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~---i~~ 79 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFG--TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGT---IFS 79 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS---EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTE---EET
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcc--eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCe---EEc
Confidence 56888899988 5667889999999 465553 4555779999999999999999 45888 787
Q ss_pred Cccc
Q 019811 330 GKQM 333 (335)
Q Consensus 330 g~~l 333 (335)
|.-|
T Consensus 80 g~~m 83 (100)
T PF05172_consen 80 GSLM 83 (100)
T ss_dssp TCEE
T ss_pred CcEE
Confidence 7544
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.12 E-value=0.0024 Score=42.46 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=40.4
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (335)
...+++ +|..|...||.++|++||.| .|.++-|. .|||...+.+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 455564 99999999999999999987 44455331 499999999999999987753
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.02 E-value=0.0053 Score=53.51 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeec---CCC--CCc--------ceEEEEEeCCHHHHHHHHHHhC
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD---QKT--GRS--------RGFGFVSFRNQQDAQSAINDLT 204 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~---~~~--~~~--------~g~afv~f~~~~~a~~a~~~l~ 204 (335)
..+.++|.+.|||.+-.-+.|.++|..+|.|..|+|... +.+ +.. +-.|+|+|+..+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 356789999999999999999999999999999999855 222 112 3468999999999999999875
Q ss_pred Cc
Q 019811 205 GK 206 (335)
Q Consensus 205 ~~ 206 (335)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 54
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.00 E-value=0.0011 Score=55.90 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=66.7
Q ss_pred CcceEEECCCCccccHHHHHHHhccCC--CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
...++||+||-..+|.+||.+.+...| .+..+++..++.+|.++|||+|...+..+.++.++.|..+.+.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 346899999999999999999998876 5777888888889999999999999999999999999999998865554
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.97 E-value=0.00035 Score=56.62 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=45.7
Q ss_pred HHHHHHhh-hcCCeeeEEEEEecc-----cceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 277 LDLHRHFH-SLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 277 ~~l~~~f~-~~G~~~i~~v~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
|||...|+ +|| ++..+.+..+ .|.+||.|...++|.+|+..|||. +|.|++|.
T Consensus 83 Ed~f~E~~~kyg--Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR---w~~G~pi~ 141 (260)
T KOG2202|consen 83 EDVFTELEDKYG--EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR---WYNGRPIH 141 (260)
T ss_pred HHHHHHHHHHhh--hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc---cccCCcce
Confidence 56666666 899 6888877655 689999999999999999999999 99999985
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.85 E-value=0.0034 Score=46.90 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=48.5
Q ss_pred CCCCCeEEEcCCC-----cccCHH----HHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCccccc
Q 019811 259 NPQYTTVYVGNLA-----PEVTQL----DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (335)
Q Consensus 259 ~~~~~~l~v~nlp-----~~~t~~----~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 329 (335)
+|+..||.|.=+. .....+ +|.+.|..|| .+.-+++.. +..+|+|.+-..|.+|+ .++|. .++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~G--evvLvRfv~--~~mwVTF~dg~sALaal-s~dg~---~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYG--EVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGI---QVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS---ECEEEEET--TCEEEEESSCHHHHHHH-HGCCS---EET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCC--ceEEEEEeC--CeEEEEECccHHHHHHH-ccCCc---EEC
Confidence 3444677666554 112232 6777889999 466667765 49999999999999998 67999 999
Q ss_pred CccccC
Q 019811 330 GKQMKV 335 (335)
Q Consensus 330 g~~l~v 335 (335)
|+.|+|
T Consensus 96 g~~l~i 101 (146)
T PF08952_consen 96 GRTLKI 101 (146)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 999875
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.78 E-value=0.0061 Score=45.59 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=44.5
Q ss_pred HHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 71 PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 71 ~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
.+|.+.|..||.+.=|++..+ .-+|.|.+.++|.+|+ .++|..+.|+.|+|..-.+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 467888899998877766553 5999999999999998 5899999999999987643
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.63 E-value=0.015 Score=36.73 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=42.6
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhc----CCeeeEEEEEecccceEEEEeCCHHHHHHHHHhh
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSL----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~----G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l 320 (335)
..|+|+++. +++.+||+.+|..| + ...|....+ ..|-|-|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~---~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG---PFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC---CceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 579999985 58899999999999 5 455555543 46778899999999999765
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.62 E-value=0.0059 Score=54.96 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=54.9
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l 333 (335)
+.|.|+-||..+..|+|+.+|+.-....+++|.+.-+ ...||+|++..+|..|.+.|.... .+|.|+.|
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreev-k~fqgKpI 244 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEV-KTFQGKPI 244 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHH-HhhcCcch
Confidence 6789999999999999999999533236777777643 367999999999999998886652 26888776
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.60 E-value=0.002 Score=58.39 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccc
Q 019811 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (335)
Q Consensus 256 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l 333 (335)
+..+..++.|+|.||--.+|.-.|+.++..-|. .|.+.=|.+-+..|||.|.+.++|.....+|||..|=.-+++.|
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg-~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGG-NVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccC-chHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 445667789999999999999999999995542 56666444557899999999999999999999997633455544
No 186
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.019 Score=51.99 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=58.0
Q ss_pred CCcceEEEeCCCCCC--C----HHHHHHHHhccCCceeEEEeec---CCCCeEEEEEcCHHHHHHHHHHhCCcccc-Cce
Q 019811 54 STCRSVYVGNIHTQV--T----EPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLF-GQP 123 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~--t----~~~l~~~f~~~G~v~~v~~~~~---~~~g~afv~f~~~~~A~~a~~~l~~~~~~-g~~ 123 (335)
.-...|.|.|+|--- . ..-|..+|+++|.+..+.+..+ +.+||.|++|.+..+|..|+..|||..+. .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 444569999999432 2 2346678999999988877643 35699999999999999999999998886 567
Q ss_pred eEEee
Q 019811 124 IKVNW 128 (335)
Q Consensus 124 l~v~~ 128 (335)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 76653
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.15 E-value=0.019 Score=42.38 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=54.3
Q ss_pred CCCcceEEEeCCCCCCCH----HHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTE----PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~----~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+-.||.|+=|..++.. ..+...++.||+|.+|.+.-.. .|.|.|.|..+|-+|+.++.. ...|..+...|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 444567888877766643 3455566889999998764433 599999999999999998865 56677777766
Q ss_pred e
Q 019811 129 A 129 (335)
Q Consensus 129 ~ 129 (335)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 5
No 188
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.86 E-value=0.63 Score=39.09 Aligned_cols=158 Identities=14% Similarity=0.215 Sum_probs=103.9
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-----------CCCeEEEEEcCHHHHHHHHH---
Q 019811 47 LPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----------KSSYGFIHYFDRRSAAMAIL--- 112 (335)
Q Consensus 47 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----------~~g~afv~f~~~~~A~~a~~--- 112 (335)
.|.|.+.-.+|.|...|+..+++-..+...|-+||+|++|.++.+. ......+.|-+.+.+-....
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 4667778889999999999999999999999999999999998765 12478999999998866543
Q ss_pred -HhCC--ccccCceeEEeeecc---------CC--------------CccCCCCcceEEECCCCccccHHHHHH----Hh
Q 019811 113 -SLNG--RHLFGQPIKVNWAYA---------SG--------------QREDTSGHFNIFVGDLSPEVTDATLFA----CF 162 (335)
Q Consensus 113 -~l~~--~~~~g~~l~v~~~~~---------~~--------------~~~~~~~~~~l~v~nlp~~~t~~~l~~----~f 162 (335)
+|+. ..+....|.+.+..- .. .-.....++.|.|. +...+..+++.+ ++
T Consensus 86 QrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 86 QRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFL 164 (309)
T ss_pred HHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhh
Confidence 2222 234455666666531 00 00123445666663 223343333322 22
Q ss_pred ccCCC----ceeeEEeecC--CCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019811 163 SVYPS----CSDARVMWDQ--KTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 163 ~~~g~----v~~~~~~~~~--~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (335)
..-+. ++++.++... ...-+..||.+.|-+..-|.+.+..+..
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 22232 5666666322 2234678999999999999999887764
No 189
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.81 E-value=0.0066 Score=55.91 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=60.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+.-+|||+|+-..+..+-+......+|.|.+++... |+|..|.....+.+|+..++...+.|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 445699999999999999999999999998776544 999999999999999999999999888877754
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.63 E-value=0.019 Score=48.70 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=56.5
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec------ccceEEEEeCCHHHHHHHHHhhcCCCcccccCcc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~ 332 (335)
.++||+||-+-+|++||.+.+..-|--.+.++++.. ++|+|+|-..+..+.++.|+.|-.+ +|+|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k---~iHGQ~ 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK---TIHGQS 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc---eecCCC
Confidence 679999999999999999988877744566666654 3799999999999999999999888 888864
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.61 E-value=0.16 Score=36.45 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=47.0
Q ss_pred eEEECCCCccccHHHHHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 019811 143 NIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (335)
.+.+...|...+.++|..+...+- .|..++++++. ..++-.++++|.+..+|..-...+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444444455566665555553 57788888773 246778999999999999999999998874
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.58 E-value=0.013 Score=46.16 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=45.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc-cCCc---eeEEEeecC------CCCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSS-TGPV---EGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v---~~v~~~~~~------~~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
.....|-||+||+.+|++++++.++. ++.- ..+.-..+. ...-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34567999999999999999997776 5554 222211111 12479999999999999999999987764
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.39 E-value=0.024 Score=44.68 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=50.2
Q ss_pred CcceEEECCCCccccHHHHHHHhcc-CCCc---eeeEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCC---
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSV-YPSC---SDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLGS--- 210 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~-~g~v---~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--- 210 (335)
....|.|++||+++|++++.+.++. ++.. ..+.-...... ......|||.|.+.+++..-...++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999998887 6655 33321122111 1234569999999999999999999977632
Q ss_pred --eeeEEEEccC
Q 019811 211 --RQIRCNWATK 220 (335)
Q Consensus 211 --~~l~v~~~~~ 220 (335)
....|+++.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2344555544
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.36 E-value=0.043 Score=43.44 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=46.2
Q ss_pred CHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC--CccccCceeEEeeecc
Q 019811 69 TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIKVNWAYA 131 (335)
Q Consensus 69 t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~~~~ 131 (335)
..+.|+++|..|+.+..+..++.-. -..|.|.+.+.|.+|...|+ +..+.|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4588999999999988877766554 59999999999999999999 9999999999988843
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.06 E-value=0.01 Score=50.42 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=61.3
Q ss_pred ceEEECCCCccccHHHHH---HHhccCCCceeeEEeecCC--CC-CcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 142 FNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQK--TG-RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~---~~f~~~g~v~~~~~~~~~~--~~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
+-+|+-+|+.....+++. +.|..||.|..+.+.++.. .+ ...--++|+|...++|..|+...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888776555444 5678889999998877652 11 11223899999999999999999999999999888
Q ss_pred EEccCCC
Q 019811 216 NWATKGA 222 (335)
Q Consensus 216 ~~~~~~~ 222 (335)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8776544
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.97 E-value=0.3 Score=35.09 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=46.5
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc----cceEEEEeCCHHHHHHHHHhhcCCCccccc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 329 (335)
..+.+...|.-++.++|..+.+.+- ..+..+++.++ +-.+.++|.+...|.+-...+||+ .|+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk---~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGK---PFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCC---ccC
Confidence 3344444455566677776666665 36778888876 447899999999999999999999 554
No 197
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.96 E-value=0.018 Score=54.59 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=61.3
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCcccc--CceeEEeeecc
Q 019811 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAYA 131 (335)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~ 131 (335)
.++.|.+-..+...|..+|..||.|.+.|..++-+ .|.|+|...+.|..|+.+|+|.... |.+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45567777788899999999999999999988776 8999999999999999999997664 78888887754
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.75 E-value=0.11 Score=41.07 Aligned_cols=63 Identities=22% Similarity=0.194 Sum_probs=47.0
Q ss_pred cHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeeeEEEEccCCC
Q 019811 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 154 t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~~ 222 (335)
..+.|+++|..++.+.....+ ++.+-..|.|.+.++|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L------~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL------KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE------TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEc------CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 468899999999999888777 334559999999999999999999 899999999999985443
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.62 E-value=0.015 Score=49.35 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=60.1
Q ss_pred ceEEEeCCCCCCCHHHHH---HHHhccCCceeEEEeecCC-------CCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 57 RSVYVGNIHTQVTEPLLQ---EVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~---~~f~~~G~v~~v~~~~~~~-------~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
.-+||-+|+.....+.+. ++|.+||.|.+|.+.++.+ .--++|.|...++|..||...+|....|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 447888898776554443 4888999999998877552 125799999999999999999999999999888
Q ss_pred eeeccC
Q 019811 127 NWAYAS 132 (335)
Q Consensus 127 ~~~~~~ 132 (335)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776543
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.36 E-value=0.19 Score=44.52 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccC-CceeEEEeecCC--CCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~--~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
+.+++.|.|=.+|..++..||..|+..+- .|..+++++++. +-.+++.|.+.++|....+.+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33478899999999999999999998765 588999999764 3478999999999999999999988853
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=0.35 Score=40.63 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=53.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCce-eEEeeec
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP-IKVNWAY 130 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~~~ 130 (335)
..-|-|-+.|+.- -..|...|++||.|.+...- .+..+-+|.|.+..+|.+||. .||..|.|.. |-|....
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 3447788888765 56788899999999765443 445699999999999999995 6888887753 3454433
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.12 E-value=0.27 Score=43.61 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=58.4
Q ss_pred cceEEECCCCccccHHHHHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (335)
++.|.|-.+|..++-.||..++..+- .|.+++++||.. .++-.++++|.+..+|......+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999998764 688999998742 55677999999999999999999998874
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.01 E-value=0.16 Score=46.19 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=66.3
Q ss_pred HHHHHHHhCCccccCceeEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhcc--CCCceeeEEeecCCCCCcce
Q 019811 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV--YPSCSDARVMWDQKTGRSRG 184 (335)
Q Consensus 107 A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g 184 (335)
-..+++..-+..++.+-.+|... ...+.|.|+-||.+.-+|+++.+|+. +-.+.+|.+-.+.
T Consensus 150 I~Evlresp~VqvDekgekVrp~---------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------- 213 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRPN---------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------- 213 (684)
T ss_pred HHHHHhcCCCceeccCccccccC---------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------
Confidence 34455554555555555555433 23357888999999999999999964 6678888776441
Q ss_pred EEEEEeCCHHHHHHHHHHhCC--ceeCCeeeEEEE
Q 019811 185 FGFVSFRNQQDAQSAINDLTG--KWLGSRQIRCNW 217 (335)
Q Consensus 185 ~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~ 217 (335)
-=||+|++..||..|...|.. +.|.|+.|..++
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 169999999999999887754 457777766544
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.00 E-value=0.2 Score=37.22 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=51.0
Q ss_pred cceEEECCCCcc----ccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 141 HFNIFVGDLSPE----VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 141 ~~~l~v~nlp~~----~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
-.+|.|.=|..+ -+...+...++.||+|.++... | +-.|.|.|+|..+|-.|+.++.. ..-|..+.+.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 346666544444 3344556667889999999775 2 33599999999999999998776 5566777777
Q ss_pred Ecc
Q 019811 217 WAT 219 (335)
Q Consensus 217 ~~~ 219 (335)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.93 E-value=0.36 Score=31.03 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 66 TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 66 ~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
..++-++++..+..|+-. +|..++. | -||.|.+..+|+++....+|..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecCC-E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357889999999999855 3444544 3 479999999999999999999888777654
No 206
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.55 E-value=0.16 Score=42.07 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHH
Q 019811 48 PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSA 107 (335)
Q Consensus 48 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A 107 (335)
+++....-...|+++|||.++.-.||+..+.+.|.+ -..+.+....|-||+.|.+...|
T Consensus 322 ~~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 322 QSGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred CCcccCccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCccCC
Confidence 334344445669999999999999999999988865 45667777888999999876543
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.36 E-value=0.13 Score=35.08 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=46.1
Q ss_pred EEEEeCCHHHHHHHHHHhC-CceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCe
Q 019811 186 GFVSFRNQQDAQSAINDLT-GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264 (335)
Q Consensus 186 afv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (335)
|+|+|.+..-|.+.++.-. ...+++..+.|.-..-.......... ......++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv--------------------------~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQV--------------------------FSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEE--------------------------EEcccCCE
Confidence 6899999999999987322 23466777766654322111111000 01112278
Q ss_pred EEEcCCCcccCHHHHHHHhh
Q 019811 265 VYVGNLAPEVTQLDLHRHFH 284 (335)
Q Consensus 265 l~v~nlp~~~t~~~l~~~f~ 284 (335)
|.|.|||..+.+++|++.++
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999999987655
No 208
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.17 E-value=0.062 Score=47.73 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCcceEEEeCCCCCC-CHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 54 STCRSVYVGNIHTQV-TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~-t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
...+.|-+.-.|+.. +.++|...|.+||.|..|.+-.. .-.|.|.|.+..+|-+|. +.++..|.++.|+|.|..+.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 344556777777775 46899999999999999988555 236999999999998886 46899999999999998765
Q ss_pred C
Q 019811 133 G 133 (335)
Q Consensus 133 ~ 133 (335)
+
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.11 E-value=3.9 Score=34.52 Aligned_cols=175 Identities=9% Similarity=0.124 Sum_probs=100.0
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecC-------CCCCcceEEEEEeCCHHHHHHH----HHHhCC
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-------KTGRSRGFGFVSFRNQQDAQSA----INDLTG 205 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a----~~~l~~ 205 (335)
+.-.++.|.+.|+..+++--.+...|.+||+|+++.++.+. .......-+.+-|-+.+.+-.- ++.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34445788999999999999999999999999999998653 0112345688899988887553 333332
Q ss_pred --ceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHH-HHHH
Q 019811 206 --KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD-LHRH 282 (335)
Q Consensus 206 --~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~-l~~~ 282 (335)
..+....|.+.|..-............ ........... .-.-......+.|.|.-- ..+..++ +.+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~-~~~~~~~~~~L--------~~~i~~~gATRSl~IeF~-~~~~~~dl~~~k 160 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEE-ADFSDYLVASL--------QYNIINRGATRSLAIEFK-DPVDKDDLIEKK 160 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccc-cchhhHHhhhh--------hheeecCCcceEEEEEec-CccchhHHHHHh
Confidence 346778888888765433322211100 00000000000 000000111266766433 4443333 3332
Q ss_pred h---hhcC--CeeeEEEEEec--------ccceEEEEeCCHHHHHHHHHhhc
Q 019811 283 F---HSLG--AGVIEEVRVQR--------DKGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 283 f---~~~G--~~~i~~v~~~~--------~~g~afV~f~~~~~a~~A~~~l~ 321 (335)
+ ..-+ .-.+++|.+.. +..+|.++|-+..=|.+.+..+.
T Consensus 161 L~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 161 LPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred hhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2 2111 11456665543 25799999999999999887775
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=0.22 Score=41.79 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=49.4
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l 333 (335)
.=|.|-++|+... .-|...|+.|| .|.+....++..+.+|.|.+..+|.+|+.. +|+ .|+|..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG--~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~---ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCG--EVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGT---IIDGDVM 261 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhC--eeeeeecCCCCceEEEEecchhHHHHhhhh-cCe---eeccceE
Confidence 3455667776533 44778899999 688887777778999999999999999965 788 7877654
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.50 E-value=0.55 Score=30.20 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=43.0
Q ss_pred ccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccc
Q 019811 273 EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (335)
Q Consensus 273 ~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l 333 (335)
.++-++++..+.+|+ -..|... +-.-||.|.+..+|.+.....+|. .+.+.+|
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d--~tGfYIvF~~~~Ea~rC~~~~~~~---~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDD--RTGFYIVFNDSKEAERCFRAEDGT---LFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEec--CCEEEEEECChHHHHHHHHhcCCC---EEEEEEE
Confidence 578899999999997 5555544 446789999999999999999999 7766554
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.21 E-value=0.16 Score=47.27 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=57.6
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 258 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
..++..++||+|+...+..+-++.+...+|. |.+..... |+|+.|..+..+..|+..++-. .++|.++.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~--v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~---~~~~~kl~ 104 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGF--VPSWKRDK---FGFCEFLKHIGDLRASRLLTEL---NIDDQKLI 104 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCc--chhhhhhh---hcccchhhHHHHHHHHHHhccc---CCCcchhh
Confidence 3445588999999999999999999999995 44443333 9999999999999999999888 88888764
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.95 E-value=0.29 Score=33.44 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=43.6
Q ss_pred EEEEEcCHHHHHHHHHHh-CCccccCceeEEe--eeccCCC----ccCCCCcceEEECCCCccccHHHHHHHhc
Q 019811 97 GFIHYFDRRSAAMAILSL-NGRHLFGQPIKVN--WAYASGQ----REDTSGHFNIFVGDLSPEVTDATLFACFS 163 (335)
Q Consensus 97 afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~--~~~~~~~----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 163 (335)
|+|.|.+..-|.+.++.- +...+.+..+.|. +...... -......++|.++|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988642 1233445544443 3322211 12334557899999999999999986543
No 214
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.09 E-value=0.12 Score=46.12 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCccc-CHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 260 PQYTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 260 ~~~~~l~v~nlp~~~-t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
...+.|-+.-.|..+ +-++|...|.+|| .|..|.+..+--.|.|+|.+..+|.+|. ..++. .|+||.|+|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG--~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~a---vlnnr~iKl 440 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFG--EIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGA---VLNNRFIKL 440 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcC--ccccccccCchhhheeeeeccccccchh-ccccc---eecCceeEE
Confidence 344667777778766 5688999999999 6888888877778999999999998886 56788 899998875
No 215
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=91.08 E-value=1.1 Score=37.35 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=41.4
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCH
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 310 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~ 310 (335)
.-|+++||+.++.-.||+..+.+.| ....++.+.-..|.||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~-~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRE-CTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcC-CCceeEeeecCCcceeEecCCc
Confidence 5699999999999999999999988 3667788888899999999765
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.88 E-value=0.18 Score=48.23 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=51.0
Q ss_pred EEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCc
Q 019811 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQS 325 (335)
Q Consensus 265 l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 325 (335)
..+.|.+-..+-..|..+|..|| .+.+....++-..|.|+|.+.+.|..|+.+|+|+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYG--SVASAWTLRDLNMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhc--chhhheecccccchhhhhHHHHHHHHhhhhhcCCcc
Confidence 44445555667778999999999 699999999999999999999999999999999965
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.53 E-value=1.1 Score=29.70 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=34.6
Q ss_pred cccCHHHHHHHhhhcC---CeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 272 PEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 272 ~~~t~~~l~~~f~~~G---~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..++..+|..++...+ ...|-.|.+..+ ++||+-. .+.|..++..|++. .+.|++++|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~-~~~a~~v~~~l~~~---~~~gk~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVP-EEVAEKVLEALNGK---KIKGKKVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE--TT-HHHHHHHHTT-----SSS----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEEC-HHHHHHHHHHhcCC---CCCCeeEEE
Confidence 3578888888887653 234666777755 8888874 45888899999999 999999875
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.00 E-value=1.1 Score=29.56 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHhccCCc-----eeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 66 TQVTEPLLQEVFSSTGPV-----EGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 66 ~~~t~~~l~~~f~~~G~v-----~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
..++..+|..++...+.| -.|.+.. .|+||+-... .|..++..|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457788888888776544 3444422 3788887654 678999999999999999999753
No 219
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=84.64 E-value=1.8 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=10.3
Q ss_pred EEEcCCCcccCHHHHHHHhhhcC
Q 019811 265 VYVGNLAPEVTQLDLHRHFHSLG 287 (335)
Q Consensus 265 l~v~nlp~~~t~~~l~~~f~~~G 287 (335)
.-++|.....+...-...+..||
T Consensus 2065 ~~~~n~~s~~n~s~~qq~~~~~~ 2087 (2131)
T KOG4369|consen 2065 SSLGNASSTTNPSRTQQMYQQYG 2087 (2131)
T ss_pred chhcccCCCCCccHHHHHHHHhc
Confidence 34455544443333344444554
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.02 E-value=2 Score=32.94 Aligned_cols=114 Identities=9% Similarity=-0.016 Sum_probs=72.0
Q ss_pred EEEeCCC--CCCCHHHHHHHHhc-cCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCc
Q 019811 59 VYVGNIH--TQVTEPLLQEVFSS-TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR 135 (335)
Q Consensus 59 v~v~nlp--~~~t~~~l~~~f~~-~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 135 (335)
..|+.+. .+.+-..|...+.. ++....+.+..= ..++..+.|.+.+++.+++. .....+.|..+.+..-.+....
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~ 95 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNP 95 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccc
Confidence 4455442 34566666666644 343333333221 33689999999999999885 3456677777777655433222
Q ss_pred cCCC---CcceEEECCCCcc-ccHHHHHHHhccCCCceeeEEe
Q 019811 136 EDTS---GHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVM 174 (335)
Q Consensus 136 ~~~~---~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~~~~~ 174 (335)
.... ...=|.|.|||.. ++++-+..+.+.+|.+..+...
T Consensus 96 ~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 96 SEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 1111 1223667899987 7788889999999999887554
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.70 E-value=11 Score=35.15 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=73.5
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHHhcc----CCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+++|=|-|+..+ +...+|.-+|+.| |.|.+|.|.... |-.. .|.-..+.|-++.+-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe--------FGke--------RM~eEeV~GP~~el~ 234 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE--------FGKE--------RMKEEEVHGPPKELF 234 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh--------hhHH--------HhhhhcccCChhhhc
Confidence 456778999999976 7889999988765 478899886643 1111 122223333322221
Q ss_pred eeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 019811 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (335)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (335)
-....... . . .....-++-.+.-+..|+ +..+.. -||.|+|.+...|......|+|..
T Consensus 235 ~~~e~~~~-s-----~-----sD~ee~~~~~~~kLR~Yq-~~rLkY----------YyAVvecDsi~tA~~vYe~CDG~E 292 (650)
T KOG2318|consen 235 KPVEEYKE-S-----E-----SDDEEEEDVDREKLRQYQ-LNRLKY----------YYAVVECDSIETAKAVYEECDGIE 292 (650)
T ss_pred cccccCcc-c-----c-----cchhhhhhHHHHHHHHHH-hhhhee----------EEEEEEecCchHHHHHHHhcCcce
Confidence 11000000 0 0 001111112233444442 222222 279999999999999999999998
Q ss_pred eC--CeeeEEEEccC
Q 019811 208 LG--SRQIRCNWATK 220 (335)
Q Consensus 208 ~~--g~~l~v~~~~~ 220 (335)
+. +..+.++|...
T Consensus 293 fEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 293 FESSANKLDLRFIPD 307 (650)
T ss_pred eccccceeeeeecCC
Confidence 85 55666666543
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.99 E-value=1.4 Score=34.31 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=48.4
Q ss_pred CeEEEcCCCcccCH-----HHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCc
Q 019811 263 TTVYVGNLAPEVTQ-----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (335)
Q Consensus 263 ~~l~v~nlp~~~t~-----~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~ 331 (335)
.++.+.+++..+.. .....+|..|. +.....+.+..+...|.|.+...|..|...+++. .|.|+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n--~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~---~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQIN--EDATFQLLRSFRRVRINFSNPEAAADARIKLHST---SFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhC--cchHHHHHHhhceeEEeccChhHHHHHHHHhhhc---ccCCC
Confidence 45788888876532 23445666665 3455566677788899999999999999999999 88887
No 223
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=76.49 E-value=4.4 Score=35.76 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=5.7
Q ss_pred CHHHHHHHhhhcC
Q 019811 275 TQLDLHRHFHSLG 287 (335)
Q Consensus 275 t~~~l~~~f~~~G 287 (335)
..++|+.-..+.+
T Consensus 459 ~~d~I~~s~rk~~ 471 (505)
T COG5624 459 VDDIIHMSYRKQK 471 (505)
T ss_pred hHHHHHHHHHhcC
Confidence 3444554444443
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=75.43 E-value=8.5 Score=27.53 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCc--cccCceeEEeeeccCCC---ccCC
Q 019811 64 IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNWAYASGQ---REDT 138 (335)
Q Consensus 64 lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~~~~~~~---~~~~ 138 (335)
||+-+ +.|.++|+.-|.|.+|-....-.. ..|+..++|. .++|. |+|.-...... ...+
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypd-------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTP 74 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPD-------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTP 74 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCC-------------chhhheeeeehhhccCc-EEEccCCCcccEEEecCC
Confidence 66654 468899999999988755443221 1223233332 22233 44432221110 0111
Q ss_pred CCcceEEECCCCccccHHHHHHHhcc---CCCceeeEEeecCCCCCcceEEEEEeCCH
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSV---YPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~---~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 193 (335)
.+++.+| -|..+|..+++++|+. |-.|.+-.+.+|.--..+-..||.-|...
T Consensus 75 sgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 75 SGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 2222222 3677999999999975 55666666665533234556789888654
No 225
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=75.15 E-value=0.93 Score=38.71 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCc
Q 019811 70 EPLLQEVFSSTGPV 83 (335)
Q Consensus 70 ~~~l~~~f~~~G~v 83 (335)
..||+++++..|.+
T Consensus 152 S~dlkdilseagtm 165 (423)
T PF02166_consen 152 SADLKDILSEAGTM 165 (423)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 35556665555543
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.54 E-value=20 Score=33.48 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=56.3
Q ss_pred CCCCCCCCeEEEcCCCc-ccCHHHHHHHhhhc---CCeeeEEEEEecc--------------------------------
Q 019811 256 PENNPQYTTVYVGNLAP-EVTQLDLHRHFHSL---GAGVIEEVRVQRD-------------------------------- 299 (335)
Q Consensus 256 ~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~---G~~~i~~v~~~~~-------------------------------- 299 (335)
+......++|-|.||.+ .+..+||..+|+.| | +.|.+|.|..+
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~g-GsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD 246 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKG-GSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESD 246 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCC-CceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccc
Confidence 34455668999999998 58999999998854 4 36888887432
Q ss_pred ---------------------cceEEEEeCCHHHHHHHHHhhcCCCcccccCc
Q 019811 300 ---------------------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (335)
Q Consensus 300 ---------------------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~ 331 (335)
.=+|.|+|.+...|.+....++|. .|...
T Consensus 247 ~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~---EfEsS 296 (650)
T KOG2318|consen 247 DEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI---EFESS 296 (650)
T ss_pred hhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc---eeccc
Confidence 016889999999999999999999 77654
No 227
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=70.39 E-value=8 Score=33.68 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=6.6
Q ss_pred HHHHHHHHhcc
Q 019811 70 EPLLQEVFSST 80 (335)
Q Consensus 70 ~~~l~~~f~~~ 80 (335)
+..|.+++..+
T Consensus 98 ~rt~~~~laeh 108 (475)
T KOG3982|consen 98 FRTVVEFLAEH 108 (475)
T ss_pred HHHHHHHHHhC
Confidence 45567777554
No 228
>PRK10927 essential cell division protein FtsN; Provisional
Probab=68.65 E-value=29 Score=29.94 Aligned_cols=63 Identities=8% Similarity=0.012 Sum_probs=41.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEE---EEcCHHHHHHHHHHhCCccccC
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFI---HYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv---~f~~~~~A~~a~~~l~~~~~~g 121 (335)
....|-+|.+-..-.-+.|+.-+..-|--..|. . ..++--| =|.+.++|++++..|.+.-+.|
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~--~--~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ 311 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--T--NNGWNRVVIGPVKGKENADSTLNRLKMAGHTN 311 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEc--c--CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCc
Confidence 345677888877777888888888777544442 1 1122222 2789999999998887665544
No 229
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=68.59 E-value=3.1 Score=42.39 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=4.9
Q ss_pred ceEEEeCCCCCC
Q 019811 57 RSVYVGNIHTQV 68 (335)
Q Consensus 57 ~~v~v~nlp~~~ 68 (335)
.++|--+.++..
T Consensus 412 qa~Y~~~a~~~s 423 (1973)
T KOG4407|consen 412 QALYAVGAGPSS 423 (1973)
T ss_pred chhhhcccCCch
Confidence 334444444333
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.57 E-value=13 Score=32.89 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHh
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~ 319 (335)
..|-|.++|.....+||...|+.|+. .-.+|.+.. +..||--|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 67899999999999999999999983 344555553 56789999999999999854
No 231
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.54 E-value=3.8 Score=34.14 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=41.2
Q ss_pred CeEEEcCCCcc------------cCHHHHHHHhhhcCCeeeEEEEEecc--------------cce---------EEEEe
Q 019811 263 TTVYVGNLAPE------------VTQLDLHRHFHSLGAGVIEEVRVQRD--------------KGF---------GFVRY 307 (335)
Q Consensus 263 ~~l~v~nlp~~------------~t~~~l~~~f~~~G~~~i~~v~~~~~--------------~g~---------afV~f 307 (335)
.||++.+||-. .+++-|+..|+.||.+..++|-+..+ .|+ |||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57787777643 35677999999999533344433211 222 45777
Q ss_pred CCHHHHHHHHHhhcCCCc
Q 019811 308 STHAEAALAIQMGNTTQS 325 (335)
Q Consensus 308 ~~~~~a~~A~~~l~g~~~ 325 (335)
.....-..||..|.|.++
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 777777778888888743
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.48 E-value=8.8 Score=27.94 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=28.6
Q ss_pred eEEEeCCCCC---------CCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHH
Q 019811 58 SVYVGNIHTQ---------VTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAA 108 (335)
Q Consensus 58 ~v~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~ 108 (335)
++.|-|+|.. .+.++|.+.|+.|.++ +++...++ ++|++.|.|...-.--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChHHH
Confidence 4677777643 3568899999999988 46666655 3689999998876653
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=64.40 E-value=23 Score=24.06 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=41.9
Q ss_pred EEcCCCcccCHHHHHHHhhh-cCCeeeEEEEEec---ccceEEEEeCCHHHHHHHHHhh
Q 019811 266 YVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMG 320 (335)
Q Consensus 266 ~v~nlp~~~t~~~l~~~f~~-~G~~~i~~v~~~~---~~g~afV~f~~~~~a~~A~~~l 320 (335)
|.-.++.+.+..+|+..++. || +.+..|.... +...|||++.....|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~-VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFD-VKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 33356888999999999996 66 6888887654 3467999999999998876554
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.61 E-value=18 Score=26.36 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=25.3
Q ss_pred CeEEEcCCCccc---------CHHHHHHHhhhcCCeeeEEEEEecc-cceEEEEeCCHHH
Q 019811 263 TTVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAE 312 (335)
Q Consensus 263 ~~l~v~nlp~~~---------t~~~l~~~f~~~G~~~i~~v~~~~~-~g~afV~f~~~~~ 312 (335)
.++.|.|++... +-++|++.|+.|.+..+..+.-... .|++.|+|.+.-.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 457788886543 5578999999998644443322222 5899999976533
No 235
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=63.22 E-value=27 Score=23.29 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=42.1
Q ss_pred EEEcCCCcccCHHHHHHHhhh-cCCeeeEEEEEec---ccceEEEEeCCHHHHHHHHHhh
Q 019811 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMG 320 (335)
Q Consensus 265 l~v~nlp~~~t~~~l~~~f~~-~G~~~i~~v~~~~---~~g~afV~f~~~~~a~~A~~~l 320 (335)
-|+-.++.+.+..+|+..++. || +.+..|.... +...|||++..-..|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~-VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFD-VKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 344467889999999999996 66 6788877653 3467999999988888876554
No 236
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.85 E-value=36 Score=23.14 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=43.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-cC-CceeEEEeecCC-CCeEEEEEcCHHHHHHHHHHh
Q 019811 59 VYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (335)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~-~g~afv~f~~~~~A~~a~~~l 114 (335)
-|.--++...+..++++.++. || .|.+|.....+. ..-|||.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 566678999999999999987 67 577776665433 247999999999998876554
No 237
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.99 E-value=21 Score=31.72 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=43.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCc-eeEEEeecCCCCeEEEEEcCHHHHHHHHHH
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPV-EGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v-~~v~~~~~~~~g~afv~f~~~~~A~~a~~~ 113 (335)
...|-|.++|.....+||...|+.|+.- -+|+.+-+. .||..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 4568899999999899999999999853 244444454 599999999999999853
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=61.15 E-value=43 Score=22.32 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=43.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhc-cC-CceeEEEeecCC-CCeEEEEEcCHHHHHHHHHHh
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~-~g~afv~f~~~~~A~~a~~~l 114 (335)
.-|+-.++.+.+..++++.++. || .|.+|..+.-+. -.-|||.+...+.|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3677778999999999999977 66 466766655432 246999999999998876554
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=60.29 E-value=36 Score=28.61 Aligned_cols=137 Identities=20% Similarity=0.322 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHhccCCce-----eEEEeecCCCCeEEEEEcCHHH----HHHHHHHhCCcccc--C--ceeEEeeeccCC
Q 019811 67 QVTEPLLQEVFSSTGPVE-----GCKLIRKDKSSYGFIHYFDRRS----AAMAILSLNGRHLF--G--QPIKVNWAYASG 133 (335)
Q Consensus 67 ~~t~~~l~~~f~~~G~v~-----~v~~~~~~~~g~afv~f~~~~~----A~~a~~~l~~~~~~--g--~~l~v~~~~~~~ 133 (335)
+++.=+|.+-+. |.|. ++++.. +..-||.|.-.-. ..+.+..|+|..+. | ..|+|..+..+-
T Consensus 48 sisnwdlmerlk--~aid~~q~dsckire---snid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eaki 122 (445)
T KOG2891|consen 48 SISNWDLMERLK--GAIDNHQFDSCKIRE---SNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKI 122 (445)
T ss_pred ccchHHHHHHHH--hhcccccccceeecc---cccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcC
Confidence 455556655555 3332 344322 2467888865433 34555667776653 2 233332221110
Q ss_pred -------------------CccCCCCcceEEECCCCcc------------ccHHHHHHHhccCCCceeeEEee-----cC
Q 019811 134 -------------------QREDTSGHFNIFVGDLSPE------------VTDATLFACFSVYPSCSDARVMW-----DQ 177 (335)
Q Consensus 134 -------------------~~~~~~~~~~l~v~nlp~~------------~t~~~l~~~f~~~g~v~~~~~~~-----~~ 177 (335)
.........+|++.++|-. .+++-|+..|..||.|..|.|+. ..
T Consensus 123 dfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~ 202 (445)
T KOG2891|consen 123 DFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREE 202 (445)
T ss_pred CCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHH
Confidence 0111222357888888754 46788999999999998887752 22
Q ss_pred CCCCcc-----eEE---------EEEeCCHHHHHHHHHHhCCcee
Q 019811 178 KTGRSR-----GFG---------FVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 178 ~~~~~~-----g~a---------fv~f~~~~~a~~a~~~l~~~~~ 208 (335)
.+|+.. ||+ ||+|-.-.-...|+..|.|..+
T Consensus 203 mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 203 MNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred hcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 333332 222 3444444445556666766543
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.49 E-value=1.3 Score=40.51 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=52.5
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (335)
.+.+++.|++++++-++|..+|+.+..+..+.+..+..........+|+|+.--....|+-+|++..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 36789999999999999999999887666664432222233456789999887777778877887665433
No 241
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.47 E-value=1.1e+02 Score=26.67 Aligned_cols=116 Identities=10% Similarity=0.114 Sum_probs=63.9
Q ss_pred eEEEeCCCCCCCHHHHHH-----------HHhccC-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 58 SVYVGNIHTQVTEPLLQE-----------VFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~-----------~f~~~G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
.|.| ++.+.-|..||+- +.++|| ...+|.++.+... -.+.-.+..--.+|+..|-..--.|-.|.
T Consensus 66 AvLi-GINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~--s~~~~PT~~Nir~Al~wLV~~aq~gD~Lv 142 (362)
T KOG1546|consen 66 AVLI-GINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE--SPVRIPTGKNIRRALRWLVESAQPGDSLV 142 (362)
T ss_pred EEEE-eecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC--cccccCcHHHHHHHHHHHHhcCCCCCEEE
Confidence 3444 5777778777753 446788 5677888776542 22334455666677766644444567788
Q ss_pred EeeeccCCCccC----CCCcceEEECCCCcc-----ccHHHHHHHhccCCCceeeEEeec
Q 019811 126 VNWAYASGQRED----TSGHFNIFVGDLSPE-----VTDATLFACFSVYPSCSDARVMWD 176 (335)
Q Consensus 126 v~~~~~~~~~~~----~~~~~~l~v~nlp~~-----~t~~~l~~~f~~~g~v~~~~~~~~ 176 (335)
+.|+-......+ ...+.-=.|--++.+ ++.++.+.+.++.-.-..+.++.|
T Consensus 143 fHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~D 202 (362)
T KOG1546|consen 143 FHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISD 202 (362)
T ss_pred EEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEee
Confidence 888743332211 111111122233333 567777777776644444444444
No 242
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=56.73 E-value=22 Score=23.01 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=43.2
Q ss_pred HHHHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++|.+.|...| .|..+.-+..+.++.+...-||+.+...+... .++=..+++..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46777777777 57777666666566777788888876655333 23455678888888876543
No 243
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=55.40 E-value=5.7 Score=36.00 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=5.4
Q ss_pred EEECCCCccccH
Q 019811 144 IFVGDLSPEVTD 155 (335)
Q Consensus 144 l~v~nlp~~~t~ 155 (335)
+.|..|..+|.+
T Consensus 493 vKIHqlNK~Wrd 504 (775)
T KOG1151|consen 493 VKIHQLNKNWRD 504 (775)
T ss_pred Eeeehhccchhh
Confidence 334444454443
No 244
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.64 E-value=31 Score=21.82 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.7
Q ss_pred HHHHHHhhhcCCeeeEEEEEec
Q 019811 277 LDLHRHFHSLGAGVIEEVRVQR 298 (335)
Q Consensus 277 ~~l~~~f~~~G~~~i~~v~~~~ 298 (335)
.+|+++|+..|.+.+..+....
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999976666665543
No 245
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=52.19 E-value=74 Score=23.59 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=44.2
Q ss_pred CCCCeEEEcCCCcc---cCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 260 PQYTTVYVGNLAPE---VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 260 ~~~~~l~v~nlp~~---~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
.+...|.|+..... .+-..+...++.-| ..+.++... .+...|.|++.++-.+|.+.|...
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~g-I~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~ 96 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANG-IHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRT 96 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCC-CCcceEEee--CCEEEEEECCHHHHHHHHHHHHHH
Confidence 33456777776444 56678888999888 345555444 458999999999999988887654
No 246
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=50.14 E-value=73 Score=21.06 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=30.9
Q ss_pred HHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHh
Q 019811 71 PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (335)
Q Consensus 71 ~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l 114 (335)
.++.+.+..+| +...++.-....++.|+-+.+.+.+.++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 56777778888 44555544433568888888999998888765
No 247
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=50.10 E-value=22 Score=31.42 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=47.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCC-ceeEEEeecC------CCCeEEEEEcCHHHHHHHHHHhCCcccc
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~~~~------~~g~afv~f~~~~~A~~a~~~l~~~~~~ 120 (335)
...|-|++||+..++.+|.+-...+-. +......+.. ..+.|||.|...++........+|..|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 356899999999999999988877543 2222222111 1268999999999988888888886664
No 248
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.52 E-value=36 Score=26.77 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=51.1
Q ss_pred eEEECCCCccc-----cHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-eeEEE
Q 019811 143 NIFVGDLSPEV-----TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIRCN 216 (335)
Q Consensus 143 ~l~v~nlp~~~-----t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~ 216 (335)
.+.+.+++..+ ......++|..|.+.....++ ++.+..-|.|.+.+.|..|.-.++...+.|. .+..-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45555555442 233455667766666555555 3345577889999999999999999999887 77777
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
++.....
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 7655443
No 249
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.36 E-value=3.7 Score=37.82 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=51.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
..++|+++|+++.++-.+|..+|+.+--+..+.+...- -..+++|.|.-.-.-..|+.+||+.-+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 35779999999999999999999988766665543321 12578899988888788888888766643
No 250
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=48.00 E-value=11 Score=32.90 Aligned_cols=10 Identities=0% Similarity=0.298 Sum_probs=5.0
Q ss_pred HHHHHHHHhc
Q 019811 70 EPLLQEVFSS 79 (335)
Q Consensus 70 ~~~l~~~f~~ 79 (335)
.+.|..+++.
T Consensus 341 n~qi~qlykd 350 (503)
T PF03249_consen 341 NEQIIQLYKD 350 (503)
T ss_pred cHHHHHHHHH
Confidence 3455555553
No 251
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.77 E-value=1.4e+02 Score=26.05 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHhc-------------cCCceeEEEeecCCCCeEEEEEcCH
Q 019811 66 TQVTEPLLQEVFSS-------------TGPVEGCKLIRKDKSSYGFIHYFDR 104 (335)
Q Consensus 66 ~~~t~~~l~~~f~~-------------~G~v~~v~~~~~~~~g~afv~f~~~ 104 (335)
.-||..+|.+|=.. .|.+..|++....+..|-|-+|.+.
T Consensus 301 s~WtRpdI~~FK~~i~~d~~~gvItvGhGetVTVRVPThenGsclFWEFATD 352 (469)
T KOG3878|consen 301 SIWTRPDIEQFKTEISADDGDGVITVGHGETVTVRVPTHENGSCLFWEFATD 352 (469)
T ss_pred hhcCcccHHHHHHHhccCCCCCeEEecCCceEEEeccccCCCceEEEEeccc
Confidence 34566666655432 2344445555544555778888654
No 252
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.41 E-value=16 Score=34.30 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=5.7
Q ss_pred CCCcceEEEeCC
Q 019811 53 PSTCRSVYVGNI 64 (335)
Q Consensus 53 ~~~~~~v~v~nl 64 (335)
+.+...|++-..
T Consensus 230 ~vP~pvi~~pqm 241 (728)
T KOG4592|consen 230 RVPPPVIYLPQM 241 (728)
T ss_pred CCCCCccccccC
Confidence 344445665433
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=47.27 E-value=31 Score=22.34 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=41.7
Q ss_pred HHHHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++|.+.|...| .+..+.-+..+.++.+...-+|+.....+-.. -++-+.++|+.+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46777788887 56777666665556666777887765533222 34556678999888876543
No 254
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=43.65 E-value=29 Score=26.30 Aligned_cols=83 Identities=13% Similarity=-0.017 Sum_probs=52.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCC
Q 019811 183 RGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 262 (335)
Q Consensus 183 ~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (335)
.++..+.|.+.+++.+++. .....++|..+.+..-++........ .....
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~-----------------------------~~~~~ 104 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVK-----------------------------FEHIP 104 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccc-----------------------------eeccc
Confidence 3579999999999999886 34455677666665443211100000 00011
Q ss_pred CeEEEcCCCcc-cCHHHHHHHhhhcCCeeeEEEEEe
Q 019811 263 TTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQ 297 (335)
Q Consensus 263 ~~l~v~nlp~~-~t~~~l~~~f~~~G~~~i~~v~~~ 297 (335)
.=|.|.|||.. .+++-++.+.+.+| .+..+...
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG--~~i~vD~~ 138 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIG--EPIEVDEN 138 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcC--CeEEEEcC
Confidence 34778899986 57888899999999 35555443
No 255
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=43.17 E-value=1.4e+02 Score=22.21 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=44.3
Q ss_pred eEEEeCCCCC---CCHHHHHHHHhccC-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 58 SVYVGNIHTQ---VTEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 58 ~v~v~nlp~~---~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.|.|++...+ .+...+.+.++.-| .++++.... +...|.|.+.++-.+|.+.|....=.+..+.+..+
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~----~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN----DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC----CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3777766433 56788888888877 455654422 36899999999988888776544333334444433
No 256
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=42.77 E-value=59 Score=22.48 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCCcccCHHHHHHHhhhcCCeeeEEEEEecc--cceEEEEeCCHHHHHHHHHhhc
Q 019811 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 269 nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~--~g~afV~f~~~~~a~~A~~~l~ 321 (335)
.+-+.++...|..-|---|- .-.-..+.+| +..|.|+|.+.+.+..|...|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gk-k~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGK-KNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCc-ccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 55666777777777765552 3334445555 7899999999999999987764
No 257
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=42.02 E-value=20 Score=32.72 Aligned_cols=6 Identities=17% Similarity=-0.036 Sum_probs=2.2
Q ss_pred EeCCCC
Q 019811 61 VGNIHT 66 (335)
Q Consensus 61 v~nlp~ 66 (335)
|+..++
T Consensus 166 vr~~~P 171 (775)
T KOG1151|consen 166 VRLAKP 171 (775)
T ss_pred cccCCC
Confidence 333333
No 258
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=41.55 E-value=34 Score=34.23 Aligned_cols=7 Identities=43% Similarity=0.430 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019811 7 KQQQQQQ 13 (335)
Q Consensus 7 ~qqqqqq 13 (335)
+|++|+|
T Consensus 1167 qq~~q~q 1173 (1229)
T KOG2133|consen 1167 QQAHQLQ 1173 (1229)
T ss_pred HHHHHHH
Confidence 3333333
No 259
>PF14893 PNMA: PNMA
Probab=41.39 E-value=20 Score=31.52 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHh----ccCCc--eeEEEeecCCCCeEEEEEcCHHH
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFS----STGPV--EGCKLIRKDKSSYGFIHYFDRRS 106 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~----~~G~v--~~v~~~~~~~~g~afv~f~~~~~ 106 (335)
...+.|.|.+||.+++++++.+.+. ..|.. ..-...++.+..-|+|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 3456799999999999999888775 34432 11111222233467888765444
No 260
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.85 E-value=63 Score=28.23 Aligned_cols=56 Identities=29% Similarity=0.253 Sum_probs=37.3
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeE
Q 019811 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV 265 (335)
Q Consensus 186 afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (335)
|||+|++..+|..|.+.+.... ++.+++..+.+ ..-|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe-----------------------------------------P~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE-----------------------------------------PDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC-----------------------------------------cccc
Confidence 7999999999999998544332 23334433322 1458
Q ss_pred EEcCCCcccCHHHHHHHhh
Q 019811 266 YVGNLAPEVTQLDLHRHFH 284 (335)
Q Consensus 266 ~v~nlp~~~t~~~l~~~f~ 284 (335)
...||..+..+..++..+.
T Consensus 38 ~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 38 IWENLSISSKQRFLRRIIV 56 (325)
T ss_pred cccccCCChHHHHHHHHHH
Confidence 8899977777777766554
No 261
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.19 E-value=39 Score=22.06 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=22.6
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCCCcccccCc
Q 019811 301 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (335)
Q Consensus 301 g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~ 331 (335)
...+|+|.+..+|.+|-+.|... .+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~---gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKN---GIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHC---CCcEE
Confidence 36799999999999999988776 55444
No 262
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.15 E-value=54 Score=22.16 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=23.2
Q ss_pred CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCC
Q 019811 82 PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (335)
Q Consensus 82 ~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~ 116 (335)
.|.++ +..+.-+||-||+=.+..++..|++.+.+
T Consensus 33 ~I~Si-~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSI-FAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EE-EE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEE-EEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 34454 33455689999999999999999976543
No 263
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=38.83 E-value=88 Score=20.48 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccc
Q 019811 76 VFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (335)
Q Consensus 76 ~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~ 119 (335)
-+.+||.|.-+ ++...|+. -|.|.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~----Skk~kYvv-lYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYV----SKKMKYVV-LYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEE----ECCccEEE-EEECHHHHHHHHHHHhcCCC
Confidence 56779988644 33334554 48899999999988876544
No 264
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.65 E-value=40 Score=29.85 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=44.6
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc--------cceEEEEeCCHHHHHHHHHhhcCC
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
..+.|.+||+.++++++.+-..++-. .+....+... .+.|||.|.+..+...-...++|+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~-~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPE-HVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCcc-ccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 56899999999999998887776531 3333333211 478999999999988877888888
No 265
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=37.31 E-value=74 Score=21.50 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=25.0
Q ss_pred eeeEEEEEecc-cceEEEEeCCHHHHHHHHHhhcCC
Q 019811 289 GVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 289 ~~i~~v~~~~~-~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
..|.++....+ +|+.||+=.+..+..+|++.+.+.
T Consensus 32 l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 32 LNIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ----EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 35777766654 899999999999999999887765
No 266
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=37.01 E-value=76 Score=27.72 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=35.9
Q ss_pred EEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhc
Q 019811 97 GFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS 163 (335)
Q Consensus 97 afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 163 (335)
|||.|.+..+|..|++.+.... ++.+++..+.+.. .|.=.||..+..+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc---------cccccccCCChHHHHHHHHHH
Confidence 7999999999999998644333 3455666554322 344467766655665555544
No 267
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.79 E-value=1.2e+02 Score=19.89 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=32.5
Q ss_pred HHHHHHhhhcCCeeeEEEEEecc--cceEEEEeCCHHHHHHHHHhhc
Q 019811 277 LDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 277 ~~l~~~f~~~G~~~i~~v~~~~~--~g~afV~f~~~~~a~~A~~~l~ 321 (335)
.++++.+..+| +....+.-. .++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G---a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG---ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT---ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777788888 566666666 6788888889999998887764
No 268
>PRK02302 hypothetical protein; Provisional
Probab=35.19 E-value=1e+02 Score=21.24 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccc
Q 019811 76 VFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (335)
Q Consensus 76 ~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~ 119 (335)
-+.+||.|.-+ ++...|+ |-|.+.++|+..++.|....+
T Consensus 22 ~LrkfG~I~Y~----Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYH----SKRSRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEE----eccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 45779988644 3333455 458999999999988866544
No 269
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=34.95 E-value=96 Score=21.38 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=32.1
Q ss_pred EEcCCCcccCHHHHHHHhhh-cCCeeeEEEEEecc----------------cceEEEEeCCH
Q 019811 266 YVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD----------------KGFGFVRYSTH 310 (335)
Q Consensus 266 ~v~nlp~~~t~~~l~~~f~~-~G~~~i~~v~~~~~----------------~g~afV~f~~~ 310 (335)
+.-.++..++.-||+++++. || +.+.+|....- ...|+|++...
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~-V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYG-VKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHT-SEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred EEEEEeCCCCHHHHHHHHHhhcC-CCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 33456889999999999984 66 67888776521 14688988765
No 270
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=34.49 E-value=60 Score=31.03 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=49.8
Q ss_pred eEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
+|+..+--...+..-+...+...+.+....++.....+..-+-++++|.....+..|.. |.++.+....+.+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 56666665556666777777778888888777776666655678999998887765553 5666665555443
No 271
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.15 E-value=56 Score=25.69 Aligned_cols=53 Identities=19% Similarity=0.076 Sum_probs=34.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-----CCCeEEEEEcCHHHHHHHHHH
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILS 113 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afv~f~~~~~A~~a~~~ 113 (335)
+++|.. |.+..-++|..+-+ |.+..|.+.... -+|-.||.|.+.+.|...+..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456665 33333344444444 688888776533 258899999999999887754
No 272
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=33.76 E-value=21 Score=36.99 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.5
Q ss_pred EEEeCC
Q 019811 187 FVSFRN 192 (335)
Q Consensus 187 fv~f~~ 192 (335)
|+..++
T Consensus 634 t~sIk~ 639 (1973)
T KOG4407|consen 634 TSSIKT 639 (1973)
T ss_pred eeeeec
Confidence 444443
No 273
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=32.28 E-value=1.2e+02 Score=18.19 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=29.6
Q ss_pred HHHHHHHHhccC-CceeEEEeecC-CCCeEEEEEcCHHHHHHHH
Q 019811 70 EPLLQEVFSSTG-PVEGCKLIRKD-KSSYGFIHYFDRRSAAMAI 111 (335)
Q Consensus 70 ~~~l~~~f~~~G-~v~~v~~~~~~-~~g~afv~f~~~~~A~~a~ 111 (335)
-..+...+...| .|.++.+.... ..+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 466777787777 67777776654 4456677888888877765
No 274
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=32.16 E-value=24 Score=30.81 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=40.9
Q ss_pred HHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCc
Q 019811 70 EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117 (335)
Q Consensus 70 ~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~ 117 (335)
...+++++.++|.|..-.+.+.-+.|.+||-.-..+++.+++..|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 578899999999887766767677889999999999999999988764
No 275
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=31.75 E-value=1.9e+02 Score=20.43 Aligned_cols=60 Identities=8% Similarity=0.197 Sum_probs=41.8
Q ss_pred CCCeEEEcCCCccc---CHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 261 QYTTVYVGNLAPEV---TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 261 ~~~~l~v~nlp~~~---t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
+...|-|+...... +..++...++.-| ..+.++. ...+...|.|.+.++-.+|.+.|...
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~-I~~k~i~--~~~~~llirf~~~~~Ql~Ak~~L~~~ 92 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAG-IAVKSIE--QEGDSLLIRFDSTDQQLKAKDVLSKA 92 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCC-CCcceEE--eeCCEEEEEECCHHHHHHHHHHHHHH
Confidence 33557776653322 2358899999888 3444444 44568999999999999998888665
No 276
>PRK02886 hypothetical protein; Provisional
Probab=31.58 E-value=1.3e+02 Score=20.65 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccc
Q 019811 76 VFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (335)
Q Consensus 76 ~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~ 119 (335)
-+.+||.|.-+ ++...|+ |-|.|.++|+..++.|....|
T Consensus 20 ~LrkyG~I~Y~----Skr~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYV----SKRLKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEE----eccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 45679988644 3333455 458999999999988876544
No 277
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.49 E-value=19 Score=33.89 Aligned_cols=6 Identities=33% Similarity=1.010 Sum_probs=2.4
Q ss_pred ccccCc
Q 019811 117 RHLFGQ 122 (335)
Q Consensus 117 ~~~~g~ 122 (335)
..+.|+
T Consensus 336 ~r~~GR 341 (728)
T KOG4592|consen 336 DRIFGR 341 (728)
T ss_pred cccccc
Confidence 333443
No 278
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.23 E-value=1.8e+02 Score=20.02 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=34.6
Q ss_pred CHHHHHHHhhhcCCeeeEEEEEecc--cceEEEEeCCHHHHHHHHHhhc
Q 019811 275 TQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 275 t~~~l~~~f~~~G~~~i~~v~~~~~--~g~afV~f~~~~~a~~A~~~l~ 321 (335)
..+.++++++..| +.+.++.+... .....+++.|.+.|.++.-.+.
T Consensus 21 R~~a~~~~~e~~G-g~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 21 RAEAVRALIEALG-GKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHHcC-CEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 3567888999999 48887776655 3567889999998888765543
No 279
>PRK11901 hypothetical protein; Reviewed
Probab=30.91 E-value=2e+02 Score=25.21 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCC---eEE--EEEcCHHHHHHHHHHhCC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGF--IHYFDRRSAAMAILSLNG 116 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g---~af--v~f~~~~~A~~a~~~l~~ 116 (335)
+...-+|-|-.+ ..++.|..|.++++ +..+++......| |.. =.|.+.++|..|+..|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 344455555553 35888888888876 3556666544333 333 369999999999988743
No 280
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.64 E-value=47 Score=27.33 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCeEEEcCCCcccCHHHHHHHhhhcCC
Q 019811 262 YTTVYVGNLAPEVTQLDLHRHFHSLGA 288 (335)
Q Consensus 262 ~~~l~v~nlp~~~t~~~l~~~f~~~G~ 288 (335)
..+||+.|+|...+++-|..+.+.+|.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~ 66 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGH 66 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhh
Confidence 378999999999999999999999984
No 281
>PF14893 PNMA: PNMA
Probab=29.18 E-value=39 Score=29.71 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=30.6
Q ss_pred CeEEEcCCCcccCHHHHHHHhh----hcCCeeeEEEEEecc--cceEEEEeCCH
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFH----SLGAGVIEEVRVQRD--KGFGFVRYSTH 310 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~----~~G~~~i~~v~~~~~--~g~afV~f~~~ 310 (335)
+.|.|.+||.++++++|.+.+. ..|...+..-.+.+. ...|+|+|...
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 7799999999999999888765 444222222222222 34677777544
No 282
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.97 E-value=1.4e+02 Score=18.24 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=40.6
Q ss_pred eEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCH----HHHHHHHHh
Q 019811 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH----AEAALAIQM 319 (335)
Q Consensus 264 ~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~----~~a~~A~~~ 319 (335)
|+.|.||.-.--...|.+.+...- .+.++.+....+.+-|+|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~--GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP--GVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST--TEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCC--CCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 467778887777888888888774 388999988889999999755 444445543
No 283
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=28.82 E-value=3.2e+02 Score=24.11 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHH----------hccCCceeEEEeecCC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVF----------SSTGPVEGCKLIRKDK 93 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f----------~~~G~v~~v~~~~~~~ 93 (335)
..-+-+|.-.|||... |.+|+.+. ...|.|.+|.+.....
T Consensus 34 ~dfSLSlv~TnLp~E~-E~eLRsfiakrlskgal~~G~GnVasvel~~pe~ 83 (353)
T PF15053_consen 34 DDFSLSLVDTNLPSEA-EPELRSFIAKRLSKGALFEGMGNVASVELSIPES 83 (353)
T ss_pred CcceeeeeecCCCccc-cHHHHHHHHHHHhccccccCCCceeeEeecCCCc
Confidence 4456789999999887 66777654 4468999998866544
No 284
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=27.83 E-value=2.1e+02 Score=19.69 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=33.5
Q ss_pred HHHHHHHHhccC-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHh
Q 019811 70 EPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (335)
Q Consensus 70 ~~~l~~~f~~~G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l 114 (335)
.+.++++++..| .+.++......---...+++.|.+.|.++...+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 466788888887 688888877665557778899999887776443
No 285
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=27.59 E-value=24 Score=22.78 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=18.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHh
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFS 78 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~ 78 (335)
...++++|||+||..+-.+.=..++.
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHHH
Confidence 34578899999999886655444433
No 286
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=25.75 E-value=2e+02 Score=21.84 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=38.3
Q ss_pred EEcCCCcccCHHHHHHHhhh-cCCeeeEEEEEecc---cceEEEEeCCHHHHHHHHHh
Q 019811 266 YVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQM 319 (335)
Q Consensus 266 ~v~nlp~~~t~~~l~~~f~~-~G~~~i~~v~~~~~---~g~afV~f~~~~~a~~A~~~ 319 (335)
++-.++...+..+|+..++. |+ +.+..|....- ..-|||++....+|......
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~-VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYD-VKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhC-CeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 33356778899999999996 66 68888876532 35799999777776655443
No 287
>PHA01632 hypothetical protein
Probab=25.54 E-value=74 Score=19.45 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=17.1
Q ss_pred EEEcCCCcccCHHHHHHHhhh
Q 019811 265 VYVGNLAPEVTQLDLHRHFHS 285 (335)
Q Consensus 265 l~v~nlp~~~t~~~l~~~f~~ 285 (335)
|.|..+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 556688999999999987764
No 288
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=2.5e+02 Score=19.96 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHHHHhhhcCCeeeEEEEEec--ccceEEEEeCCHHHHHHHHH
Q 019811 277 LDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQ 318 (335)
Q Consensus 277 ~~l~~~f~~~G~~~i~~v~~~~--~~g~afV~f~~~~~a~~A~~ 318 (335)
.+|.++.+.+|. .--+|.+.. +.-||++++.|.++...++.
T Consensus 27 PE~~a~lk~agi-~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGI-RNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCC-ceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 478889999992 444556655 45799999997777666553
No 289
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.33 E-value=2.7e+02 Score=25.16 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=28.9
Q ss_pred CCCCCCCeEEEcCCCc-ccCHHHHHHHhh---hcCCeeeEEEEEe
Q 019811 257 ENNPQYTTVYVGNLAP-EVTQLDLHRHFH---SLGAGVIEEVRVQ 297 (335)
Q Consensus 257 ~~~~~~~~l~v~nlp~-~~t~~~l~~~f~---~~G~~~i~~v~~~ 297 (335)
+.+.+...|-|.||.+ .+...+|...|+ ++| +.+..|.|.
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~g-gkl~kV~iy 184 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYG-GKLSKVKIY 184 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCC-CccceeEec
Confidence 3355668899999998 478889988887 456 366666663
No 290
>PRK11901 hypothetical protein; Reviewed
Probab=25.02 E-value=2.4e+02 Score=24.68 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=36.3
Q ss_pred CCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEE----EeCCHHHHHHHHHhhcC
Q 019811 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV----RYSTHAEAALAIQMGNT 322 (335)
Q Consensus 261 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV----~f~~~~~a~~A~~~l~g 322 (335)
...+|-|..+ .+++.|..|.+.++-..+......++..-.|| .|.+.++|..|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQNLSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcCcCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3356666554 45788888888776212222223333333333 58999999999988754
No 291
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.02 E-value=77 Score=26.16 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=28.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeE
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC 86 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v 86 (335)
.....++|+-|+|...|++-|..+.+.+|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 4456779999999999999999999999966443
No 292
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.59 E-value=1.6e+02 Score=23.03 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=22.9
Q ss_pred cccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCC
Q 019811 272 PEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST 309 (335)
Q Consensus 272 ~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~ 309 (335)
..+|-++|.++|.+|+. .+.--.+..+.--..|.|.+
T Consensus 107 hgcT~e~I~~~F~~ys~-~~~~e~~~~~eFD~~i~Fed 143 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSD-NVHCEEMDNGEFDYLIYFED 143 (175)
T ss_pred CCcCHHHHHHHHHHhcC-CeEEEeecCCCCCEEEEecC
Confidence 47899999999999983 23322333322234566653
No 293
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=22.24 E-value=27 Score=31.67 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=8.4
Q ss_pred CHHHHHHHHhccCC
Q 019811 69 TEPLLQEVFSSTGP 82 (335)
Q Consensus 69 t~~~l~~~f~~~G~ 82 (335)
+..+|.+++..+|.
T Consensus 255 SsktlhdlyldcgS 268 (572)
T KOG4679|consen 255 SSKTLHDLYLDCGS 268 (572)
T ss_pred cchhHHHHHHhhcc
Confidence 45566666666653
No 294
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.07 E-value=2.2e+02 Score=19.49 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=25.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCCeEEEEE
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHY 101 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afv~f 101 (335)
-|||+|+...+-+.-...+.+..+.-.-+-+..+. ..||+|-..
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 39999999888665555555544333222222222 457888765
No 295
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=1.3e+02 Score=25.42 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=22.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCc
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPV 83 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v 83 (335)
....|+|||+.+|..-+..+++.--.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 347899999999999999999864444
No 296
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=21.62 E-value=2.5e+02 Score=18.57 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=38.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-------cCCceeEEEee--cCCCCeEEEEEcCHHHHHHHHHHhCCcc
Q 019811 59 VYVGNIHTQVTEPLLQEVFSS-------TGPVEGCKLIR--KDKSSYGFIHYFDRRSAAMAILSLNGRH 118 (335)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~-------~G~v~~v~~~~--~~~~g~afv~f~~~~~A~~a~~~l~~~~ 118 (335)
|-.+++|..+|.++|...-.. +..|.-++-.- +..+-||+..=.|.+...++.+. .|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCC
Confidence 456889999999998887654 32333333222 34555777777888887777654 3543
No 297
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.03 E-value=92 Score=17.26 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHhccCCce
Q 019811 67 QVTEPLLQEVFSSTGPVE 84 (335)
Q Consensus 67 ~~t~~~l~~~f~~~G~v~ 84 (335)
.++.++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 478899999999998653
No 298
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.00 E-value=2.2e+02 Score=17.70 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=30.2
Q ss_pred CHHHHHHHHhccC-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHH
Q 019811 69 TEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113 (335)
Q Consensus 69 t~~~l~~~f~~~G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~ 113 (335)
.-.++-++|.+.| .|.++.......++..-+.+.+.+.|.++++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 4578888888877 67787765554445555566666677766654
No 299
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.57 E-value=2.5e+02 Score=18.09 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=35.4
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCC
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST 309 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~ 309 (335)
.+++|.++.-.-=...+....+...+ +..+.+....+.+.|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~g--v~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDG--VASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCC--eeEEEEEcccCeEEEEEcC
Confidence 45777777766667778888887764 7888888888889999988
No 300
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=15 Score=32.99 Aligned_cols=78 Identities=8% Similarity=-0.179 Sum_probs=56.9
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
...++..+|...+++++.-+|..||.|..+...+....+.....+|+.-.. .++..+++.+.-..+.|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 345677888889999999999999998888766554555667778887654 355666666666667777777766544
Done!