Query 019811
Match_columns 335
No_of_seqs 245 out of 2816
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 4.9E-46 1.7E-50 319.4 28.2 232 55-335 21-258 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 6.7E-45 2.3E-49 313.5 24.9 238 52-335 37-285 (292)
3 3md3_A Nuclear and cytoplasmic 100.0 2E-34 6.7E-39 227.3 20.7 162 57-219 1-165 (166)
4 4f02_A Polyadenylate-binding p 100.0 1E-34 3.5E-39 237.9 19.2 166 53-221 12-181 (213)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.2E-33 4.3E-38 223.2 20.6 161 55-218 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 1.8E-33 6.2E-38 231.5 20.6 169 54-222 26-206 (216)
7 1fxl_A Paraneoplastic encephal 100.0 2.7E-33 9.3E-38 221.0 19.6 160 56-218 2-167 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 3.1E-33 1.1E-37 226.6 20.3 171 52-224 9-186 (196)
9 2g4b_A Splicing factor U2AF 65 100.0 1.6E-32 5.6E-37 217.6 19.3 159 55-219 3-172 (172)
10 3nmr_A Cugbp ELAV-like family 100.0 1.8E-32 6.3E-37 217.9 18.7 162 55-219 2-175 (175)
11 4f02_A Polyadenylate-binding p 100.0 1.1E-32 3.8E-37 225.8 16.7 159 139-335 13-175 (213)
12 2yh0_A Splicing factor U2AF 65 100.0 5E-32 1.7E-36 219.8 19.7 165 55-222 3-195 (198)
13 3tyt_A Heterogeneous nuclear r 100.0 3.9E-32 1.3E-36 220.1 18.3 160 55-217 3-203 (205)
14 2cjk_A Nuclear polyadenylated 100.0 1E-32 3.5E-37 217.6 13.2 161 55-221 2-166 (167)
15 2adc_A Polypyrimidine tract-bi 100.0 1.8E-31 6.2E-36 221.1 20.5 164 52-221 30-228 (229)
16 1b7f_A Protein (SXL-lethal pro 100.0 2.9E-31 1E-35 209.5 19.2 156 140-335 2-165 (168)
17 3smz_A Protein raver-1, ribonu 100.0 5.1E-31 1.7E-35 225.9 21.6 168 55-223 94-266 (284)
18 1fxl_A Paraneoplastic encephal 100.0 7.1E-31 2.4E-35 207.1 20.2 154 141-334 2-161 (167)
19 1fje_B Nucleolin RBD12, protei 100.0 1.4E-31 4.9E-36 212.7 16.0 163 52-221 9-174 (175)
20 3pgw_A U1-A; protein-RNA compl 100.0 1.4E-30 4.7E-35 223.0 21.7 162 53-219 6-281 (282)
21 1qm9_A Polypyrimidine tract-bi 100.0 3.9E-31 1.3E-35 214.5 16.7 160 56-221 3-197 (198)
22 3md3_A Nuclear and cytoplasmic 100.0 9.5E-31 3.2E-35 206.1 17.9 155 142-335 1-161 (166)
23 2adc_A Polypyrimidine tract-bi 100.0 2.1E-30 7.1E-35 214.7 20.8 190 137-335 30-222 (229)
24 3sde_A Paraspeckle component 1 100.0 2.5E-30 8.5E-35 218.4 21.1 160 50-221 16-179 (261)
25 1qm9_A Polypyrimidine tract-bi 100.0 2.4E-30 8.2E-35 209.8 19.0 186 141-335 3-191 (198)
26 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-30 4.4E-35 224.3 18.1 167 54-221 115-291 (292)
27 1l3k_A Heterogeneous nuclear r 100.0 3.2E-30 1.1E-34 208.8 18.5 163 137-335 9-177 (196)
28 3tyt_A Heterogeneous nuclear r 100.0 3.9E-30 1.3E-34 208.4 18.5 185 140-332 3-194 (205)
29 3nmr_A Cugbp ELAV-like family 100.0 4.9E-30 1.7E-34 203.8 18.5 157 140-335 2-171 (175)
30 2qfj_A FBP-interacting repress 100.0 3.3E-30 1.1E-34 212.0 16.7 166 141-335 28-199 (216)
31 3pgw_A U1-A; protein-RNA compl 100.0 2.1E-29 7.3E-34 215.6 19.8 190 138-335 6-277 (282)
32 2cjk_A Nuclear polyadenylated 100.0 4.1E-30 1.4E-34 202.7 9.9 153 140-335 2-160 (167)
33 1fje_B Nucleolin RBD12, protei 100.0 6.6E-30 2.3E-34 203.1 9.4 159 137-335 9-168 (175)
34 2g4b_A Splicing factor U2AF 65 100.0 1.3E-28 4.5E-33 195.0 15.9 149 140-335 3-168 (172)
35 2yh0_A Splicing factor U2AF 65 100.0 4.6E-28 1.6E-32 196.4 17.7 168 141-335 4-188 (198)
36 3sde_A Paraspeckle component 1 100.0 1.9E-27 6.5E-32 200.7 18.5 148 137-335 18-173 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 1.8E-22 6.2E-27 157.1 13.9 139 85-223 2-152 (158)
38 4f25_A Polyadenylate-binding p 99.9 8.2E-23 2.8E-27 149.8 10.3 103 55-157 4-113 (115)
39 4f25_A Polyadenylate-binding p 99.9 9.7E-22 3.3E-26 144.1 10.6 110 140-278 4-113 (115)
40 2i2y_A Fusion protein consists 99.9 1.6E-21 5.4E-26 150.3 10.6 125 92-222 11-149 (150)
41 2i2y_A Fusion protein consists 99.8 1.1E-20 3.7E-25 145.5 10.2 131 180-335 10-142 (150)
42 4fxv_A ELAV-like protein 1; RN 99.8 3.3E-20 1.1E-24 131.8 11.2 80 141-220 19-98 (99)
43 3lqv_A PRE-mRNA branch site pr 99.8 3.4E-20 1.1E-24 136.2 9.4 104 53-167 5-109 (115)
44 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4.1E-24 128.9 10.7 77 55-131 18-98 (99)
45 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-19 7.7E-24 139.5 12.2 137 170-335 2-144 (158)
46 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-19 6E-24 127.6 10.2 81 53-135 13-95 (105)
47 2hvz_A Splicing factor, argini 99.8 9.2E-20 3.1E-24 130.5 8.8 93 57-150 1-100 (101)
48 2lea_A Serine/arginine-rich sp 99.8 9.8E-20 3.4E-24 137.1 8.1 124 96-223 6-129 (135)
49 2lxi_A RNA-binding protein 10; 99.8 1E-19 3.6E-24 127.2 7.5 84 141-224 1-86 (91)
50 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.4E-18 4.7E-23 124.8 13.4 86 51-136 10-97 (103)
51 3s8s_A Histone-lysine N-methyl 99.8 9E-19 3.1E-23 126.7 11.7 83 139-221 4-86 (110)
52 3r27_A HnRNP L, heterogeneous 99.8 6.6E-19 2.3E-23 123.3 10.5 79 53-133 18-98 (100)
53 2cq3_A RNA-binding protein 9; 99.8 2.3E-18 7.8E-23 123.7 13.7 86 50-135 9-96 (103)
54 1x4d_A Matrin 3; structural ge 99.8 5.3E-19 1.8E-23 125.2 10.0 80 52-133 11-93 (102)
55 2lxi_A RNA-binding protein 10; 99.8 2.1E-19 7.3E-24 125.6 7.6 79 56-134 1-85 (91)
56 1x4a_A Splicing factor, argini 99.8 3.7E-18 1.3E-22 123.9 14.2 84 52-135 18-102 (109)
57 2wbr_A GW182, gawky, LD47780P; 99.8 9.3E-19 3.2E-23 117.9 9.8 72 56-129 7-78 (89)
58 2cq1_A PTB-like protein L; RRM 99.8 2.3E-18 7.9E-23 122.1 12.4 81 53-135 12-94 (101)
59 2cpz_A CUG triplet repeat RNA- 99.8 3.7E-18 1.3E-22 125.2 14.0 85 52-136 21-109 (115)
60 1x5s_A Cold-inducible RNA-bind 99.8 2.2E-18 7.5E-23 123.5 12.5 85 52-136 8-96 (102)
61 2d9p_A Polyadenylate-binding p 99.8 1.6E-18 5.6E-23 124.4 11.8 86 51-136 10-97 (103)
62 2e5j_A Methenyltetrahydrofolat 99.8 2.3E-18 7.9E-23 122.1 12.1 83 50-133 13-95 (97)
63 2err_A Ataxin-2-binding protei 99.8 9.8E-19 3.3E-23 126.7 10.3 83 50-132 23-107 (109)
64 1x5u_A Splicing factor 3B subu 99.8 2.5E-18 8.7E-23 123.9 12.4 85 51-135 10-98 (105)
65 2lkz_A RNA-binding protein 5; 99.8 5.3E-19 1.8E-23 124.0 8.3 81 140-220 8-94 (95)
66 1whw_A Hypothetical protein ri 99.8 2.7E-18 9.4E-23 122.3 12.2 83 53-135 5-91 (99)
67 2kxn_B Transformer-2 protein h 99.8 1.5E-18 5E-23 129.5 10.9 84 50-133 40-127 (129)
68 1wex_A Hypothetical protein (r 99.8 2.9E-18 1E-22 122.3 11.8 80 53-134 12-93 (104)
69 2dgs_A DAZ-associated protein 99.8 4.8E-18 1.6E-22 121.0 12.9 83 52-135 6-92 (99)
70 2dnz_A Probable RNA-binding pr 99.8 3.9E-18 1.3E-22 120.6 12.2 83 54-136 3-89 (95)
71 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.9E-23 123.4 11.1 85 52-136 8-96 (102)
72 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-18 3.6E-23 125.9 9.2 81 53-133 25-106 (111)
73 2dgo_A Cytotoxic granule-assoc 99.8 4.5E-18 1.5E-22 124.7 12.8 86 50-135 9-98 (115)
74 3s8s_A Histone-lysine N-methyl 99.8 1.8E-18 6.3E-23 125.1 10.4 79 54-132 4-86 (110)
75 2e5h_A Zinc finger CCHC-type a 99.8 3.2E-18 1.1E-22 120.7 11.5 79 52-130 12-94 (94)
76 2ad9_A Polypyrimidine tract-bi 99.8 1.8E-18 6.3E-23 125.5 10.4 83 52-136 27-111 (119)
77 3md1_A Nuclear and cytoplasmic 99.8 3.7E-18 1.3E-22 117.5 11.5 80 142-221 2-81 (83)
78 2cq0_A Eukaryotic translation 99.8 3.8E-18 1.3E-22 122.5 11.7 87 49-135 8-98 (103)
79 1x4f_A Matrin 3; structural ge 99.8 5.5E-18 1.9E-22 121.6 12.4 81 52-134 21-104 (112)
80 2cph_A RNA binding motif prote 99.8 6.1E-18 2.1E-22 122.4 12.8 84 52-135 11-100 (107)
81 2khc_A Testis-specific RNP-typ 99.8 3.5E-18 1.2E-22 125.9 11.7 79 51-129 35-117 (118)
82 2dnm_A SRP46 splicing factor; 99.8 3.7E-18 1.3E-22 122.6 11.4 84 52-135 9-96 (103)
83 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-18 6.1E-23 120.2 9.5 79 54-132 4-86 (87)
84 4a8x_A RNA-binding protein wit 99.8 2.9E-18 1E-22 119.4 10.5 79 55-133 3-86 (88)
85 2dnq_A RNA-binding protein 4B; 99.8 5.9E-18 2E-22 118.3 12.1 79 53-135 5-83 (90)
86 2dnh_A Bruno-like 5, RNA bindi 99.8 6.7E-18 2.3E-22 121.7 12.7 83 53-135 12-100 (105)
87 2cq0_A Eukaryotic translation 99.8 6.6E-18 2.3E-22 121.2 12.6 88 136-223 10-97 (103)
88 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.3E-18 1.1E-22 118.9 10.7 83 139-221 4-86 (87)
89 2do4_A Squamous cell carcinoma 99.8 5.2E-18 1.8E-22 121.1 11.9 81 53-133 14-97 (100)
90 2dgo_A Cytotoxic granule-assoc 99.8 9.2E-18 3.1E-22 123.1 13.5 90 135-224 9-98 (115)
91 1x4h_A RNA-binding protein 28; 99.8 7E-18 2.4E-22 122.9 12.8 84 52-135 11-104 (111)
92 2dgx_A KIAA0430 protein; RRM d 99.8 4.7E-18 1.6E-22 120.2 11.5 81 53-133 6-91 (96)
93 1sjr_A Polypyrimidine tract-bi 99.8 4.5E-18 1.5E-22 129.7 12.0 81 53-133 43-125 (164)
94 2cpf_A RNA binding motif prote 99.8 3.1E-18 1.1E-22 121.8 10.5 83 54-136 3-92 (98)
95 2cqc_A Arginine/serine-rich sp 99.8 5.7E-18 2E-22 119.7 11.7 83 49-131 8-94 (95)
96 2la4_A Nuclear and cytoplasmic 99.8 6E-19 2E-23 126.2 6.6 77 53-131 24-100 (101)
97 2cqc_A Arginine/serine-rich sp 99.8 6E-18 2E-22 119.6 11.6 86 135-220 9-94 (95)
98 1x4c_A Splicing factor, argini 99.8 1E-17 3.4E-22 121.2 13.0 80 53-135 12-96 (108)
99 1x5t_A Splicing factor 3B subu 99.8 4.2E-18 1.5E-22 120.6 10.7 83 54-136 3-90 (96)
100 1whw_A Hypothetical protein ri 99.8 7.3E-18 2.5E-22 120.1 12.0 86 138-223 5-90 (99)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.7E-18 1.6E-22 117.5 10.6 78 53-130 4-85 (85)
102 2cpj_A Non-POU domain-containi 99.8 6.3E-18 2.1E-22 120.4 11.6 80 52-133 11-90 (99)
103 1why_A Hypothetical protein ri 99.8 1.1E-17 3.7E-22 118.7 12.7 79 53-133 14-94 (97)
104 2dgp_A Bruno-like 4, RNA bindi 99.8 7.3E-18 2.5E-22 121.7 12.1 84 52-135 9-99 (106)
105 1p27_B RNA-binding protein 8A; 99.8 4.3E-18 1.5E-22 122.9 10.8 81 53-133 20-104 (106)
106 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.7E-18 1.3E-22 133.4 11.1 125 99-223 11-154 (165)
107 2dnz_A Probable RNA-binding pr 99.8 9.6E-18 3.3E-22 118.5 12.1 85 139-223 3-87 (95)
108 1x5t_A Splicing factor 3B subu 99.8 6.6E-18 2.3E-22 119.6 11.2 86 139-224 3-89 (96)
109 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.5E-18 1.5E-22 117.6 10.0 82 138-219 4-85 (85)
110 2cqd_A RNA-binding region cont 99.8 1.1E-17 3.8E-22 122.8 12.5 87 50-137 11-101 (116)
111 2x1f_A MRNA 3'-END-processing 99.8 5.9E-18 2E-22 119.8 10.7 82 141-222 2-83 (96)
112 2x1f_A MRNA 3'-END-processing 99.8 5.5E-18 1.9E-22 120.0 10.4 80 55-134 1-84 (96)
113 2xnq_A Nuclear polyadenylated 99.8 7.8E-18 2.7E-22 119.2 11.2 76 53-132 19-95 (97)
114 2do4_A Squamous cell carcinoma 99.8 1.5E-17 5.2E-22 118.7 12.7 85 137-222 13-97 (100)
115 2la6_A RNA-binding protein FUS 99.8 8.1E-18 2.8E-22 119.8 11.2 77 53-129 10-98 (99)
116 3md1_A Nuclear and cytoplasmic 99.8 5.5E-18 1.9E-22 116.6 10.0 77 56-132 1-81 (83)
117 2dgs_A DAZ-associated protein 99.8 1.4E-17 4.9E-22 118.6 12.5 85 138-223 7-91 (99)
118 1wi8_A EIF-4B, eukaryotic tran 99.8 1E-17 3.4E-22 120.5 11.8 82 52-135 11-97 (104)
119 1u6f_A Tcubp1, RNA-binding pro 99.8 1.9E-17 6.4E-22 125.7 13.8 84 52-135 38-125 (139)
120 1x4g_A Nucleolysin TIAR; struc 99.8 9.2E-18 3.1E-22 121.7 11.5 83 52-136 21-103 (109)
121 2jrs_A RNA-binding protein 39; 99.8 9.4E-18 3.2E-22 121.2 11.5 81 53-133 23-107 (108)
122 2ytc_A PRE-mRNA-splicing facto 99.8 7.5E-18 2.6E-22 116.4 10.5 76 53-130 9-85 (85)
123 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-17 3.7E-22 119.9 11.6 87 138-224 9-95 (102)
124 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-17 4.3E-22 122.3 12.2 87 137-223 21-107 (115)
125 2ywk_A Putative RNA-binding pr 99.8 5.1E-18 1.7E-22 120.0 9.7 80 52-131 12-94 (95)
126 2la6_A RNA-binding protein FUS 99.8 1.2E-17 4.3E-22 118.8 11.8 84 136-219 8-99 (99)
127 2jvo_A Nucleolar protein 3; nu 99.8 5.6E-18 1.9E-22 122.3 10.0 78 53-134 28-105 (108)
128 2fy1_A RNA-binding motif prote 99.7 1.2E-17 4.1E-22 122.3 11.8 81 53-133 4-87 (116)
129 1x5u_A Splicing factor 3B subu 99.7 1.3E-17 4.5E-22 120.2 11.8 88 136-223 10-97 (105)
130 2jrs_A RNA-binding protein 39; 99.7 1E-17 3.5E-22 121.0 11.2 86 136-221 21-106 (108)
131 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4E-22 117.8 11.2 83 137-219 12-94 (94)
132 2lkz_A RNA-binding protein 5; 99.7 3.8E-18 1.3E-22 119.6 8.4 79 53-131 6-94 (95)
133 2dng_A Eukaryotic translation 99.7 1.6E-17 5.5E-22 119.2 11.8 82 52-135 11-96 (103)
134 2dgv_A HnRNP M, heterogeneous 99.7 9E-18 3.1E-22 117.9 10.2 82 53-134 5-88 (92)
135 1p27_B RNA-binding protein 8A; 99.7 1.1E-17 3.9E-22 120.7 11.0 86 137-222 19-104 (106)
136 3lqv_A PRE-mRNA branch site pr 99.7 4E-18 1.4E-22 125.0 8.7 104 138-287 5-108 (115)
137 2dgt_A RNA-binding protein 30; 99.7 2.2E-17 7.5E-22 115.9 12.1 79 53-135 7-85 (92)
138 3p5t_L Cleavage and polyadenyl 99.7 1.9E-18 6.5E-23 120.7 6.5 81 142-222 2-84 (90)
139 2a3j_A U1 small nuclear ribonu 99.7 1.1E-17 3.9E-22 123.7 11.0 81 54-134 27-112 (127)
140 2dnm_A SRP46 splicing factor; 99.7 9.2E-18 3.1E-22 120.5 10.3 87 137-223 9-95 (103)
141 2dnh_A Bruno-like 5, RNA bindi 99.7 2.8E-17 9.5E-22 118.4 12.7 86 138-224 12-100 (105)
142 2dnp_A RNA-binding protein 14; 99.7 1.9E-17 6.7E-22 115.6 11.5 78 53-134 6-83 (90)
143 2cpe_A RNA-binding protein EWS 99.7 1.9E-17 6.4E-22 121.0 11.9 84 52-135 11-106 (113)
144 2dgu_A Heterogeneous nuclear r 99.7 2.5E-17 8.4E-22 118.2 12.3 79 53-135 8-86 (103)
145 2kt5_A RNA and export factor-b 99.7 7.8E-17 2.7E-21 119.7 15.4 85 50-134 29-116 (124)
146 1x4h_A RNA-binding protein 28; 99.7 2.2E-17 7.6E-22 120.2 12.2 88 136-223 10-103 (111)
147 2fy1_A RNA-binding motif prote 99.7 2.3E-17 7.9E-22 120.8 12.2 85 138-223 4-88 (116)
148 2d9p_A Polyadenylate-binding p 99.7 2.9E-17 9.8E-22 117.9 12.5 87 136-224 10-96 (103)
149 2e44_A Insulin-like growth fac 99.7 1.4E-17 4.9E-22 117.9 10.8 80 53-132 12-92 (96)
150 3ns6_A Eukaryotic translation 99.7 3.7E-18 1.2E-22 121.6 7.7 81 140-220 5-92 (100)
151 2do0_A HnRNP M, heterogeneous 99.7 3E-17 1E-21 120.1 12.9 82 52-133 11-95 (114)
152 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-17 4.7E-22 119.4 10.6 86 138-223 9-94 (102)
153 2cph_A RNA binding motif prote 99.7 2.6E-17 8.7E-22 119.1 12.1 88 136-223 10-99 (107)
154 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-17 4.8E-22 121.0 10.7 82 53-134 23-108 (110)
155 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.2E-18 1.1E-22 122.1 7.1 78 53-132 16-98 (100)
156 2cpx_A Hypothetical protein FL 99.7 3.7E-17 1.3E-21 119.8 12.8 84 53-136 22-109 (115)
157 1sjq_A Polypyrimidine tract-bi 99.7 1.1E-17 3.8E-22 118.3 9.5 71 260-335 14-86 (105)
158 2cq4_A RNA binding motif prote 99.7 9.2E-18 3.2E-22 122.8 9.4 81 52-133 21-105 (114)
159 2m2b_A RNA-binding protein 10; 99.7 1.2E-17 4.1E-22 125.2 10.2 81 53-134 20-110 (131)
160 2cpf_A RNA binding motif prote 99.7 1.7E-17 5.9E-22 117.9 10.5 85 139-223 3-90 (98)
161 2fc9_A NCL protein; structure 99.7 1.3E-17 4.3E-22 119.3 9.9 81 52-135 11-94 (101)
162 2div_A TRNA selenocysteine ass 99.7 1.9E-17 6.7E-22 117.9 10.8 85 138-222 6-95 (99)
163 2kxn_B Transformer-2 protein h 99.7 1.1E-17 3.7E-22 124.7 9.7 87 136-222 41-127 (129)
164 2khc_A Testis-specific RNP-typ 99.7 1.2E-17 4.2E-22 123.0 9.8 84 136-219 35-118 (118)
165 1oo0_B CG8781-PA, drosophila Y 99.7 2E-17 6.9E-22 120.2 10.7 86 137-222 22-107 (110)
166 3p5t_L Cleavage and polyadenyl 99.7 3.1E-18 1E-22 119.7 6.1 78 57-134 2-85 (90)
167 2cpd_A Apobec-1 stimulating pr 99.7 6.2E-17 2.1E-21 115.2 13.0 78 53-134 12-91 (99)
168 2dng_A Eukaryotic translation 99.7 6E-17 2E-21 116.2 12.8 85 137-223 11-95 (103)
169 3r27_A HnRNP L, heterogeneous 99.7 1.1E-17 3.7E-22 117.2 8.5 76 257-335 16-91 (100)
170 3n9u_C Cleavage and polyadenyl 99.7 1.4E-17 4.6E-22 128.3 9.9 78 54-131 53-136 (156)
171 1s79_A Lupus LA protein; RRM, 99.7 1.4E-17 4.8E-22 118.8 9.3 78 53-131 8-88 (103)
172 2cpe_A RNA-binding protein EWS 99.7 4.4E-17 1.5E-21 119.0 12.1 87 137-223 11-105 (113)
173 2div_A TRNA selenocysteine ass 99.7 2.3E-17 7.8E-22 117.5 10.4 81 53-133 6-95 (99)
174 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-17 8.6E-22 118.9 10.7 88 136-223 8-98 (106)
175 2cpi_A CCR4-NOT transcription 99.7 1.1E-17 3.9E-22 121.5 8.8 82 52-133 11-102 (111)
176 2cqp_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 116.5 10.9 84 138-221 12-95 (98)
177 4a8x_A RNA-binding protein wit 99.7 2.1E-17 7.3E-22 115.0 9.8 83 140-222 3-86 (88)
178 2kvi_A Nuclear polyadenylated 99.7 2.2E-17 7.4E-22 116.8 9.9 79 53-135 7-86 (96)
179 1u6f_A Tcubp1, RNA-binding pro 99.7 4.3E-17 1.5E-21 123.7 12.1 88 137-224 38-125 (139)
180 2jwn_A Embryonic polyadenylate 99.7 2.7E-18 9.2E-23 127.7 5.1 82 140-222 35-116 (124)
181 2ywk_A Putative RNA-binding pr 99.7 2.9E-17 1E-21 116.0 10.2 83 137-220 12-94 (95)
182 3ns6_A Eukaryotic translation 99.7 9.4E-18 3.2E-22 119.5 7.7 79 54-132 4-93 (100)
183 2cqp_A RNA-binding protein 12; 99.7 2.6E-17 8.9E-22 117.0 9.9 80 53-132 12-95 (98)
184 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.2E-17 1.4E-21 124.0 11.7 81 49-129 56-140 (140)
185 2cqh_A IGF-II mRNA-binding pro 99.7 2.4E-17 8.2E-22 115.9 9.5 80 53-135 5-86 (93)
186 1wi8_A EIF-4B, eukaryotic tran 99.7 6.3E-17 2.2E-21 116.3 11.8 85 137-223 11-96 (104)
187 3ulh_A THO complex subunit 4; 99.7 3E-17 1E-21 118.6 10.2 78 53-130 26-106 (107)
188 2cq3_A RNA-binding protein 9; 99.7 1.4E-16 4.7E-21 114.3 13.5 87 136-224 10-96 (103)
189 3ulh_A THO complex subunit 4; 99.7 5.4E-17 1.8E-21 117.3 11.4 82 137-219 25-106 (107)
190 3s7r_A Heterogeneous nuclear r 99.7 3E-17 1E-21 113.9 9.6 77 52-129 7-87 (87)
191 2dhg_A TRNA selenocysteine ass 99.7 3.4E-17 1.2E-21 117.7 10.2 86 137-223 5-92 (104)
192 2hvz_A Splicing factor, argini 99.7 1.6E-17 5.6E-22 118.7 8.4 76 142-222 1-76 (101)
193 2rs2_A Musashi-1, RNA-binding 99.7 3.3E-17 1.1E-21 118.5 10.0 82 52-134 21-106 (109)
194 2dh8_A DAZ-associated protein 99.7 3.5E-17 1.2E-21 117.8 10.1 84 52-136 12-99 (105)
195 2do0_A HnRNP M, heterogeneous 99.7 1.7E-16 5.7E-21 116.1 13.7 86 137-223 11-96 (114)
196 2e5i_A Heterogeneous nuclear r 99.7 3.2E-16 1.1E-20 114.7 15.1 79 53-133 22-103 (124)
197 3ucg_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 113.4 10.3 80 141-221 6-85 (89)
198 1x5p_A Negative elongation fac 99.7 1.4E-16 4.9E-21 112.8 12.8 80 52-135 11-90 (97)
199 3s7r_A Heterogeneous nuclear r 99.7 5.9E-17 2E-21 112.4 10.6 81 137-218 7-87 (87)
200 2dhg_A TRNA selenocysteine ass 99.7 7.2E-17 2.5E-21 116.0 11.4 83 53-135 6-93 (104)
201 2cqd_A RNA-binding region cont 99.7 9E-17 3.1E-21 117.9 12.1 85 137-222 13-97 (116)
202 1wf1_A RNA-binding protein RAL 99.7 1.2E-16 4.3E-21 115.9 12.7 77 53-133 24-101 (110)
203 2wbr_A GW182, gawky, LD47780P; 99.7 2.7E-17 9.3E-22 110.7 8.3 69 262-335 7-75 (89)
204 1whx_A Hypothetical protein ri 99.7 3.8E-17 1.3E-21 118.6 9.8 78 54-133 8-85 (111)
205 1s79_A Lupus LA protein; RRM, 99.7 2.6E-17 8.9E-22 117.4 8.7 81 138-220 8-88 (103)
206 3ex7_B RNA-binding protein 8A; 99.7 5.7E-17 2E-21 120.8 10.9 82 53-134 19-104 (126)
207 3n9u_C Cleavage and polyadenyl 99.7 4.5E-17 1.5E-21 125.4 10.5 81 140-220 54-136 (156)
208 1x4e_A RNA binding motif, sing 99.7 8.3E-18 2.8E-22 116.2 5.8 78 53-130 2-83 (85)
209 2ek1_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 115.8 9.0 82 139-220 13-94 (95)
210 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-16 4E-21 114.7 12.1 85 137-223 11-95 (103)
211 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-16 5.1E-21 114.1 12.6 82 52-135 11-96 (103)
212 1p1t_A Cleavage stimulation fa 99.7 3.8E-17 1.3E-21 117.5 9.2 83 140-222 7-89 (104)
213 2cpy_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 119.3 9.4 80 52-132 11-94 (114)
214 1wex_A Hypothetical protein (r 99.7 4.8E-17 1.7E-21 116.0 9.6 75 258-335 11-85 (104)
215 3ucg_A Polyadenylate-binding p 99.7 4.6E-17 1.6E-21 113.5 9.4 77 55-132 5-85 (89)
216 2dgw_A Probable RNA-binding pr 99.7 1.6E-16 5.6E-21 111.1 12.2 82 138-222 7-88 (91)
217 2ek1_A RNA-binding protein 12; 99.7 2.1E-17 7.3E-22 116.7 7.7 77 54-130 13-93 (95)
218 1nu4_A U1A RNA binding domain; 99.7 3E-17 1E-21 116.5 8.4 81 53-133 5-90 (97)
219 3pgw_S U1-70K; protein-RNA com 99.7 8E-18 2.7E-22 150.9 6.6 85 138-222 99-183 (437)
220 2nlw_A Eukaryotic translation 99.7 4.5E-17 1.5E-21 117.1 9.3 80 53-132 12-100 (105)
221 2rs2_A Musashi-1, RNA-binding 99.7 7E-17 2.4E-21 116.8 10.3 85 137-222 21-105 (109)
222 2lea_A Serine/arginine-rich sp 99.7 3.4E-17 1.2E-21 123.2 8.9 84 52-135 43-130 (135)
223 1x4e_A RNA binding motif, sing 99.7 9.3E-18 3.2E-22 116.0 5.3 81 139-219 3-83 (85)
224 2dgx_A KIAA0430 protein; RRM d 99.7 8.7E-17 3E-21 113.6 10.4 81 139-222 7-91 (96)
225 2diu_A KIAA0430 protein; struc 99.7 1.5E-16 5.1E-21 108.1 11.0 74 56-135 8-87 (96)
226 3ex7_B RNA-binding protein 8A; 99.7 6.7E-17 2.3E-21 120.5 10.3 88 137-224 18-105 (126)
227 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-16 3.7E-21 112.4 10.8 83 138-222 5-87 (92)
228 2dgw_A Probable RNA-binding pr 99.7 1.3E-16 4.4E-21 111.7 11.1 79 53-133 7-88 (91)
229 3zzy_A Polypyrimidine tract-bi 99.7 1.2E-16 4E-21 117.4 11.3 80 53-133 25-107 (130)
230 2dh8_A DAZ-associated protein 99.7 5.7E-17 1.9E-21 116.7 9.5 86 137-223 12-97 (105)
231 2mss_A Protein (musashi1); RNA 99.7 2.6E-17 8.8E-22 110.8 7.1 75 143-218 1-75 (75)
232 1x4b_A Heterogeneous nuclear r 99.7 9.3E-17 3.2E-21 117.8 10.5 83 53-136 24-110 (116)
233 1x4d_A Matrin 3; structural ge 99.7 6.7E-17 2.3E-21 114.4 9.3 80 137-222 11-93 (102)
234 2cqg_A TDP-43, TAR DNA-binding 99.7 2.9E-16 9.9E-21 112.6 12.8 86 136-223 10-95 (103)
235 2m2b_A RNA-binding protein 10; 99.7 3E-17 1E-21 123.1 7.9 85 137-222 19-109 (131)
236 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.5E-17 8.5E-22 117.4 7.0 83 137-221 15-98 (100)
237 1p1t_A Cleavage stimulation fa 99.7 4.8E-17 1.7E-21 116.9 8.6 80 54-133 6-89 (104)
238 2cq2_A Hypothetical protein LO 99.7 7.5E-17 2.6E-21 115.7 9.4 78 54-133 23-107 (114)
239 2kt5_A RNA and export factor-b 99.7 1.8E-16 6.1E-21 117.7 11.9 85 137-222 31-115 (124)
240 1wg5_A Heterogeneous nuclear r 99.7 1.7E-16 5.9E-21 113.8 11.3 81 52-133 11-95 (104)
241 1x5o_A RNA binding motif, sing 99.7 2.7E-16 9.1E-21 115.0 12.6 81 52-132 21-112 (114)
242 1wez_A HnRNP H', FTP-3, hetero 99.7 9.4E-17 3.2E-21 114.5 9.8 81 51-133 10-93 (102)
243 2cq1_A PTB-like protein L; RRM 99.7 3.1E-16 1.1E-20 111.1 12.2 82 136-223 10-93 (101)
244 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-16 6.9E-21 122.4 12.3 86 138-223 36-121 (156)
245 2dis_A Unnamed protein product 99.7 1.2E-16 4.1E-21 115.9 10.2 81 54-134 6-94 (109)
246 2krb_A Eukaryotic translation 99.7 3.1E-17 1.1E-21 112.1 6.7 72 56-127 1-81 (81)
247 1wf1_A RNA-binding protein RAL 99.7 1.4E-16 4.9E-21 115.6 10.4 96 120-223 6-102 (110)
248 2mss_A Protein (musashi1); RNA 99.7 4.5E-17 1.5E-21 109.6 7.2 71 58-129 1-75 (75)
249 2db1_A Heterogeneous nuclear r 99.7 8.8E-17 3E-21 118.0 9.3 78 53-131 14-97 (118)
250 2err_A Ataxin-2-binding protei 99.7 1.4E-16 4.8E-21 115.3 10.1 84 136-221 24-107 (109)
251 1wg1_A KIAA1579 protein, homol 99.7 7.9E-17 2.7E-21 111.9 8.3 77 54-133 3-79 (88)
252 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.7E-17 1.3E-21 110.7 6.5 76 142-218 1-76 (77)
253 1fjc_A Nucleolin RBD2, protein 99.7 6.6E-17 2.3E-21 114.4 8.0 81 53-134 13-93 (96)
254 2fc8_A NCL protein; structure 99.7 1.1E-16 3.9E-21 114.5 9.3 82 51-135 10-95 (102)
255 1x4a_A Splicing factor, argini 99.7 3.4E-16 1.2E-20 113.4 11.9 84 137-223 18-101 (109)
256 2ad9_A Polypyrimidine tract-bi 99.7 2E-16 6.9E-21 114.8 10.6 81 138-224 28-110 (119)
257 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.9E-17 1.7E-21 110.1 6.9 72 57-129 1-76 (77)
258 2ytc_A PRE-mRNA-splicing facto 99.7 1.7E-16 5.8E-21 109.6 9.6 72 259-335 9-81 (85)
259 2cpi_A CCR4-NOT transcription 99.7 1.4E-16 4.9E-21 115.7 9.6 85 138-222 12-102 (111)
260 2ki2_A SS-DNA binding protein 99.7 2E-17 7E-22 115.6 4.9 77 57-134 2-82 (90)
261 2dis_A Unnamed protein product 99.7 1.7E-16 5.9E-21 115.0 9.9 85 139-223 6-94 (109)
262 1x4f_A Matrin 3; structural ge 99.7 8.4E-17 2.9E-21 115.5 7.9 74 259-335 22-96 (112)
263 1x4b_A Heterogeneous nuclear r 99.7 2.6E-16 9E-21 115.4 10.6 83 140-223 26-108 (116)
264 2e5g_A U6 snRNA-specific termi 99.7 3.5E-16 1.2E-20 110.1 10.8 79 53-134 5-84 (94)
265 1wel_A RNA-binding protein 12; 99.7 1.2E-16 4.1E-21 118.6 8.8 79 52-131 21-103 (124)
266 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.2E-16 1.4E-20 120.6 12.2 82 53-134 36-121 (156)
267 1x5o_A RNA binding motif, sing 99.7 4E-16 1.4E-20 114.1 11.4 83 138-221 22-112 (114)
268 2ki2_A SS-DNA binding protein 99.7 2E-17 6.9E-22 115.6 4.3 80 142-222 2-81 (90)
269 1fj7_A Nucleolin RBD1, protein 99.7 1E-16 3.4E-21 114.6 8.0 80 53-134 14-97 (101)
270 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.1E-16 7.2E-21 120.1 10.2 82 137-218 59-140 (140)
271 2dnn_A RNA-binding protein 12; 99.7 2E-16 6.8E-21 113.7 9.3 77 53-131 13-92 (109)
272 2cpy_A RNA-binding protein 12; 99.7 1.9E-16 6.5E-21 115.6 9.2 83 137-221 11-94 (114)
273 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.2E-16 7.5E-21 123.3 10.2 83 53-135 69-155 (165)
274 2cq4_A RNA binding motif prote 99.7 1.3E-16 4.5E-21 116.6 8.3 80 141-221 25-104 (114)
275 2fc9_A NCL protein; structure 99.7 6.7E-16 2.3E-20 110.2 11.6 83 137-223 11-93 (101)
276 2nlw_A Eukaryotic translation 99.7 2.4E-16 8.2E-21 113.3 9.2 83 138-222 12-101 (105)
277 2hgl_A HNRPF protein, heteroge 99.7 1.5E-16 5E-21 119.0 8.3 78 52-130 40-123 (136)
278 1wez_A HnRNP H', FTP-3, hetero 99.7 3.9E-16 1.3E-20 111.3 10.1 82 138-222 12-93 (102)
279 2hgl_A HNRPF protein, heteroge 99.7 2.3E-16 7.7E-21 118.0 9.2 81 138-220 41-124 (136)
280 2fc8_A NCL protein; structure 99.7 1E-15 3.5E-20 109.5 12.3 85 136-223 10-94 (102)
281 1wg5_A Heterogeneous nuclear r 99.7 5.3E-16 1.8E-20 111.3 10.8 83 138-222 12-95 (104)
282 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-16 3.9E-21 115.4 7.3 79 52-131 7-91 (107)
283 2db1_A Heterogeneous nuclear r 99.7 3.8E-16 1.3E-20 114.6 10.1 81 138-220 14-97 (118)
284 2cpj_A Non-POU domain-containi 99.7 2.2E-16 7.7E-21 112.3 8.7 72 259-335 12-83 (99)
285 2a3j_A U1 small nuclear ribonu 99.7 2.7E-16 9.4E-21 116.2 9.3 82 138-222 26-111 (127)
286 3beg_B Splicing factor, argini 99.7 2.9E-16 1E-20 114.7 9.3 76 54-132 14-94 (115)
287 2dnq_A RNA-binding protein 4B; 99.7 9.3E-16 3.2E-20 107.0 11.2 78 138-223 5-82 (90)
288 1why_A Hypothetical protein ri 99.7 7E-16 2.4E-20 109.2 10.6 71 260-335 15-87 (97)
289 1wel_A RNA-binding protein 12; 99.7 1.9E-16 6.6E-21 117.5 8.0 82 138-220 22-103 (124)
290 2jwn_A Embryonic polyadenylate 99.7 4.5E-16 1.5E-20 115.6 9.9 79 55-134 35-117 (124)
291 2hzc_A Splicing factor U2AF 65 99.7 3.5E-16 1.2E-20 108.5 8.7 73 53-128 3-86 (87)
292 3d2w_A TAR DNA-binding protein 99.7 4.4E-16 1.5E-20 108.1 9.1 76 53-133 8-85 (89)
293 2jvr_A Nucleolar protein 3; RN 99.7 2.9E-16 1E-20 113.1 8.3 79 139-221 26-105 (111)
294 2bz2_A Negative elongation fac 99.7 7.1E-16 2.4E-20 113.5 10.4 79 52-134 35-113 (121)
295 2hgn_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 121.0 5.1 123 95-222 2-124 (139)
296 2cpx_A Hypothetical protein FL 99.7 2E-16 6.8E-21 115.9 7.3 87 138-224 22-108 (115)
297 1x4c_A Splicing factor, argini 99.7 1.6E-15 5.4E-20 109.6 11.8 80 138-224 12-96 (108)
298 2krb_A Eukaryotic translation 99.6 1.3E-16 4.5E-21 109.0 5.7 72 142-215 2-80 (81)
299 2la4_A Nuclear and cytoplasmic 99.6 4.8E-16 1.7E-20 111.0 8.8 70 261-335 26-95 (101)
300 2dgt_A RNA-binding protein 30; 99.6 2.1E-15 7.1E-20 105.7 11.9 79 137-223 6-84 (92)
301 2e5j_A Methenyltetrahydrofolat 99.6 1E-15 3.4E-20 108.4 10.3 80 138-222 16-95 (97)
302 2f3j_A RNA and export factor b 99.6 8.9E-16 3E-20 120.8 10.9 82 52-133 84-168 (177)
303 1iqt_A AUF1, heterogeneous nuc 99.6 1.7E-16 5.9E-21 106.7 5.7 71 58-129 1-75 (75)
304 1iqt_A AUF1, heterogeneous nuc 99.6 1.1E-16 3.9E-21 107.6 4.8 75 143-218 1-75 (75)
305 1fj7_A Nucleolin RBD1, protein 99.6 8.7E-17 3E-21 114.9 4.4 83 138-222 14-96 (101)
306 2jvo_A Nucleolar protein 3; nu 99.6 1.2E-15 4E-20 110.1 10.3 78 137-222 27-104 (108)
307 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-15 3.8E-20 110.6 10.1 80 138-223 22-101 (109)
308 2dnn_A RNA-binding protein 12; 99.6 8.7E-16 3E-20 110.4 9.3 78 140-220 15-92 (109)
309 1wf0_A TDP-43, TAR DNA-binding 99.6 3.5E-16 1.2E-20 108.7 6.8 79 54-135 3-81 (88)
310 2lmi_A GRSF-1, G-rich sequence 99.6 3.2E-16 1.1E-20 113.0 6.8 81 138-220 8-91 (107)
311 1whx_A Hypothetical protein ri 99.6 5.3E-16 1.8E-20 112.5 8.0 69 262-335 10-78 (111)
312 2xnq_A Nuclear polyadenylated 99.6 1.9E-15 6.4E-20 106.8 10.6 77 137-221 18-95 (97)
313 1nu4_A U1A RNA binding domain; 99.6 4.1E-16 1.4E-20 110.5 7.1 82 138-222 5-90 (97)
314 3q2s_C Cleavage and polyadenyl 99.6 5.2E-16 1.8E-20 127.3 8.4 81 140-220 67-149 (229)
315 3egn_A RNA-binding protein 40; 99.6 8.6E-16 2.9E-20 117.0 9.0 81 54-134 43-132 (143)
316 2dnp_A RNA-binding protein 14; 99.6 2.1E-15 7.1E-20 105.2 10.3 78 137-222 5-82 (90)
317 2j8a_A Histone-lysine N-methyl 99.6 8.7E-16 3E-20 110.4 8.1 80 142-221 3-96 (136)
318 2dgu_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 106.9 11.0 80 138-225 8-87 (103)
319 1fjc_A Nucleolin RBD2, protein 99.6 1.2E-15 4E-20 107.9 8.3 81 137-222 12-92 (96)
320 2hgn_A Heterogeneous nuclear r 99.6 3E-16 1E-20 117.7 5.1 80 52-133 42-124 (139)
321 2lcw_A RNA-binding protein FUS 99.4 3.9E-17 1.3E-21 119.8 0.0 83 53-135 4-98 (116)
322 2f3j_A RNA and export factor b 99.6 2.2E-15 7.6E-20 118.5 10.0 83 138-221 85-167 (177)
323 2kvi_A Nuclear polyadenylated 99.6 2E-15 6.9E-20 106.6 8.8 78 138-223 7-85 (96)
324 2cpd_A Apobec-1 stimulating pr 99.6 8.7E-15 3E-19 104.0 12.1 78 138-223 12-91 (99)
325 2cqh_A IGF-II mRNA-binding pro 99.6 2.8E-15 9.7E-20 105.2 9.5 79 138-223 5-85 (93)
326 2xs2_A Deleted in azoospermia- 99.6 6.6E-16 2.3E-20 110.5 6.2 81 139-222 7-87 (102)
327 2lcw_A RNA-binding protein FUS 99.4 4.4E-17 1.5E-21 119.5 0.0 85 139-223 5-97 (116)
328 2hgm_A HNRPF protein, heteroge 99.6 1.3E-15 4.6E-20 112.0 7.7 78 52-131 38-120 (126)
329 2dit_A HIV TAT specific factor 99.6 9.4E-15 3.2E-19 106.2 12.2 82 52-133 11-103 (112)
330 1sjr_A Polypyrimidine tract-bi 99.6 8E-15 2.7E-19 111.8 12.0 80 139-222 44-125 (164)
331 1x5p_A Negative elongation fac 99.6 1.4E-14 4.8E-19 102.4 12.6 79 137-223 11-89 (97)
332 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-15 3.8E-20 112.2 6.9 77 53-130 20-103 (123)
333 2hzc_A Splicing factor U2AF 65 99.6 2E-15 6.8E-20 104.7 7.8 71 261-335 5-84 (87)
334 2cq2_A Hypothetical protein LO 99.6 3.6E-15 1.2E-19 107.0 9.2 78 138-221 22-106 (114)
335 3q2s_C Cleavage and polyadenyl 99.6 1.7E-15 5.8E-20 124.2 8.4 77 55-131 67-149 (229)
336 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-15 6.4E-20 111.0 7.7 80 139-220 21-104 (123)
337 2pe8_A Splicing factor 45; RRM 99.6 5.4E-15 1.9E-19 105.5 9.8 79 53-131 5-93 (105)
338 1wg1_A KIAA1579 protein, homol 99.6 5.5E-15 1.9E-19 102.5 9.4 76 140-222 4-79 (88)
339 2xs2_A Deleted in azoospermia- 99.6 1.7E-15 5.8E-20 108.3 6.9 79 53-133 6-87 (102)
340 3beg_B Splicing factor, argini 99.6 3.2E-15 1.1E-19 109.2 8.3 68 261-334 15-82 (115)
341 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.1E-20 115.7 6.7 85 138-222 42-131 (143)
342 2diu_A KIAA0430 protein; struc 99.6 9.3E-15 3.2E-19 99.3 9.8 75 143-227 11-90 (96)
343 2e44_A Insulin-like growth fac 99.6 3.9E-15 1.3E-19 105.2 8.3 79 139-221 13-92 (96)
344 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 106.8 11.1 79 140-223 27-108 (130)
345 2e5g_A U6 snRNA-specific termi 99.6 8.5E-15 2.9E-19 102.9 9.9 78 139-222 6-83 (94)
346 3pgw_S U1-70K; protein-RNA com 99.6 2.1E-14 7.2E-19 128.7 14.9 80 54-133 100-183 (437)
347 2hgm_A HNRPF protein, heteroge 99.6 2.3E-15 7.7E-20 110.7 6.8 80 138-220 39-120 (126)
348 2voo_A Lupus LA protein; RNA-b 99.6 1.4E-14 4.9E-19 115.6 11.9 117 103-221 63-187 (193)
349 2pe8_A Splicing factor 45; RRM 99.6 1.7E-14 5.9E-19 102.9 10.8 82 139-220 6-93 (105)
350 3u1l_A PRE-mRNA-splicing facto 99.6 5.3E-15 1.8E-19 120.5 8.9 79 53-133 131-230 (240)
351 2dnl_A Cytoplasmic polyadenyla 99.6 8E-15 2.7E-19 106.9 8.6 73 54-129 6-85 (114)
352 2e5i_A Heterogeneous nuclear r 99.6 2.6E-14 8.8E-19 104.6 10.8 76 142-223 26-104 (124)
353 3d2w_A TAR DNA-binding protein 99.5 2.3E-14 7.9E-19 99.4 8.7 76 138-222 8-85 (89)
354 2dnl_A Cytoplasmic polyadenyla 99.5 3.9E-14 1.3E-18 103.2 10.1 77 139-218 6-85 (114)
355 2bz2_A Negative elongation fac 99.5 4.7E-14 1.6E-18 103.7 10.2 78 137-222 35-112 (121)
356 2j8a_A Histone-lysine N-methyl 99.5 2.2E-14 7.5E-19 103.2 7.7 74 57-130 3-94 (136)
357 1wf0_A TDP-43, TAR DNA-binding 99.5 3.2E-14 1.1E-18 98.7 7.1 77 140-223 4-80 (88)
358 3v4m_A Splicing factor U2AF 65 99.5 8.8E-14 3E-18 99.3 8.9 78 54-131 3-96 (105)
359 2voo_A Lupus LA protein; RNA-b 99.5 9.9E-14 3.4E-18 110.7 9.7 77 55-132 108-187 (193)
360 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5E-18 100.0 8.8 77 55-131 19-108 (118)
361 3s6e_A RNA-binding protein 39; 99.5 2.8E-13 9.4E-18 97.8 10.1 78 53-130 4-91 (114)
362 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.6E-18 112.9 8.5 71 260-335 132-223 (240)
363 3v4m_A Splicing factor U2AF 65 99.5 2.4E-13 8.3E-18 97.0 8.9 81 140-220 4-96 (105)
364 2dit_A HIV TAT specific factor 99.5 1.2E-12 4.2E-17 94.9 12.5 82 137-222 11-103 (112)
365 3ue2_A Poly(U)-binding-splicin 99.4 4.4E-13 1.5E-17 97.4 9.7 81 140-220 19-108 (118)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.5E-12 5.2E-17 91.5 12.1 76 56-134 10-92 (100)
367 1jmt_A Splicing factor U2AF 35 99.4 1.8E-13 6.1E-18 97.6 5.6 72 146-218 20-103 (104)
368 1jmt_A Splicing factor U2AF 35 99.4 9.5E-14 3.2E-18 99.0 3.4 69 61-129 20-103 (104)
369 3tht_A Alkylated DNA repair pr 99.4 9E-13 3.1E-17 113.3 9.3 76 53-130 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.3 9.2E-12 3.2E-16 89.8 9.6 78 139-220 5-92 (114)
371 3tht_A Alkylated DNA repair pr 99.3 5E-12 1.7E-16 108.6 8.4 62 260-323 16-79 (345)
372 2d9o_A DNAJ (HSP40) homolog, s 99.2 5.3E-11 1.8E-15 83.6 9.5 65 151-222 27-91 (100)
373 1owx_A Lupus LA protein, SS-B, 99.2 1.2E-10 4.2E-15 83.8 9.0 74 54-129 16-93 (121)
374 1owx_A Lupus LA protein, SS-B, 99.1 1.7E-10 5.7E-15 83.2 8.7 72 258-334 14-89 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 1.9E-10 6.6E-15 77.4 8.2 71 56-131 7-85 (91)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 5.4E-10 1.8E-14 75.2 6.5 69 259-335 4-80 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 1.5E-09 5.1E-14 73.4 5.8 71 55-130 14-93 (95)
378 2l9w_A U4/U6 snRNA-associated- 98.9 2.6E-09 8.8E-14 73.5 6.8 68 263-335 22-94 (117)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 8.5E-10 2.9E-14 74.6 4.4 70 258-335 11-89 (95)
380 3dxb_A Thioredoxin N-terminall 98.9 7.1E-09 2.4E-13 84.7 8.5 68 153-220 141-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.7 2.3E-08 7.7E-13 81.7 7.7 75 56-130 124-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.7 2E-07 6.8E-12 64.2 9.1 73 55-129 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.5 2E-06 6.7E-11 58.9 10.8 89 54-154 6-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.2 1.5E-05 5.3E-10 54.5 8.8 67 263-335 9-78 (104)
385 1wey_A Calcipressin 1; structu 98.1 8.8E-06 3E-10 56.0 6.4 74 56-131 5-83 (104)
386 1wey_A Calcipressin 1; structu 98.1 6.4E-06 2.2E-10 56.7 5.7 68 263-335 6-78 (104)
387 1whv_A Poly(A)-specific ribonu 98.0 3.3E-05 1.1E-09 52.1 8.2 59 52-115 12-70 (100)
388 1uw4_A UPF3X; nonsense mediate 97.8 6.6E-05 2.3E-09 50.8 7.2 65 57-121 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 97.8 0.00021 7E-09 48.3 9.3 54 263-321 17-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.6 0.00027 9.1E-09 47.8 6.8 64 263-331 2-73 (91)
391 1wwh_A Nucleoporin 35, nucleop 97.5 0.00096 3.3E-08 47.3 9.1 74 53-130 21-95 (119)
392 3ctr_A Poly(A)-specific ribonu 97.4 0.00017 5.7E-09 48.9 4.1 53 58-115 8-60 (101)
393 3ctr_A Poly(A)-specific ribonu 97.3 0.00035 1.2E-08 47.3 4.9 54 263-321 7-60 (101)
394 1wwh_A Nucleoporin 35, nucleop 97.2 0.0018 6.1E-08 45.9 8.1 62 263-331 25-86 (119)
395 2l08_A Regulator of nonsense t 97.2 0.00042 1.4E-08 47.1 4.2 66 56-121 9-80 (97)
396 3p3d_A Nucleoporin 53; structu 96.9 0.0014 4.9E-08 47.0 5.0 72 57-130 8-97 (132)
397 4b8c_D Glucose-repressible alc 96.8 0.00043 1.5E-08 66.4 2.0 10 68-77 132-141 (727)
398 2l08_A Regulator of nonsense t 96.6 0.0026 8.7E-08 43.3 4.6 68 141-208 9-78 (97)
399 3pq1_A Poly(A) RNA polymerase; 96.6 0.0014 4.7E-08 58.4 4.1 55 56-112 53-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 95.6 0.0067 2.3E-07 54.1 3.2 54 263-319 54-108 (464)
401 3p3d_A Nucleoporin 53; structu 95.1 0.02 6.8E-07 41.1 3.9 63 263-331 8-89 (132)
402 3d45_A Poly(A)-specific ribonu 93.7 0.24 8.1E-06 45.1 8.5 57 54-115 438-494 (507)
403 3d45_A Poly(A)-specific ribonu 89.2 1.6 5.5E-05 39.6 8.8 57 262-323 440-496 (507)
404 3ipq_A Oxysterols receptor LXR 70.2 0.94 3.2E-05 37.7 0.1 14 3-16 3-16 (283)
405 4eyt_A Telomerase associated p 67.9 23 0.00077 23.2 8.1 59 261-323 11-69 (129)
406 4e8u_A Putative uncharacterize 59.2 21 0.00071 26.9 5.6 50 263-312 13-74 (172)
407 4e8u_A Putative uncharacterize 51.0 29 0.00099 26.1 5.2 50 58-108 14-76 (172)
408 2g0c_A ATP-dependent RNA helic 49.8 43 0.0015 20.9 5.4 57 273-335 12-71 (76)
409 4eyt_A Telomerase associated p 39.6 77 0.0026 20.6 8.7 56 55-114 11-66 (129)
410 3j21_T 50S ribosomal protein L 39.4 60 0.002 21.2 4.7 54 266-320 26-83 (86)
411 3h7h_B Transcription elongatio 31.4 63 0.0021 22.1 4.0 33 82-115 40-72 (106)
412 3lpe_A Putative transcription 25.2 1.5E+02 0.0051 19.4 6.0 45 278-323 28-73 (92)
413 1vq8_S 50S ribosomal protein L 23.6 83 0.0028 20.5 3.3 50 267-317 26-79 (85)
414 3fut_A Dimethyladenosine trans 23.4 70 0.0024 26.1 3.7 27 57-84 111-137 (271)
415 2exu_A Transcription initiatio 21.2 1.8E+02 0.0063 22.4 5.4 34 83-117 139-172 (200)
416 3fry_A Probable copper-exporti 21.0 1.4E+02 0.005 17.8 6.4 57 263-323 7-63 (73)
417 2e5p_A Protein PHF1, PHD finge 20.2 93 0.0032 19.1 2.8 16 295-310 32-47 (68)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.9e-46 Score=319.38 Aligned_cols=232 Identities=21% Similarity=0.335 Sum_probs=209.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCC
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (335)
++++|||+|||.++|+++|+++|+.|| |.++++ .+++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 457899999999999999999999999 888887 5667899999999999999999999999999999999864
Q ss_pred ccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
..++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|++..++|+.|.
T Consensus 94 -----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 94 -----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp -----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred -----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 336899999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCccc-CHHHHHHHhhhcCCeeeEE
Q 019811 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEE 293 (335)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~f~~~G~~~i~~ 293 (335)
|.++..+... ......++|||+|||.++ ++++|+++|+.|| .|..
T Consensus 169 v~~a~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~ 214 (284)
T 3smz_A 169 VHWTDAGQLT--------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTF 214 (284)
T ss_dssp EEECCGGGCC--------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSE
T ss_pred EEECCCCCCC--------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCC--CeEE
Confidence 9998653211 111344889999999995 9999999999999 4777
Q ss_pred EEEecc-----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 294 v~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+.+.++ +|+|||+|.+.++|.+|+..|+|. .|+|++|+|
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v 258 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL---SLGGSHLRV 258 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEE
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC---ccCCeEEEE
Confidence 777664 789999999999999999999999 999999875
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.7e-45 Score=313.53 Aligned_cols=238 Identities=15% Similarity=0.216 Sum_probs=201.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.+...++|||+|||.++|+++|+++|+.||.|.+|++..+. ++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 45678899999999999999999999999999999998864 36899999999999999994 9999999999999986
Q ss_pred ccCCCccCCCCcceEEECCCCccccHHHHHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 130 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
..++|||+|||..+++++|.++|+.|| .|..+.+++++. +.++|||||+|.+.++|.+|+..|++..+
T Consensus 116 ----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 184 (292)
T 2ghp_A 116 ----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI 184 (292)
T ss_dssp ----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 346899999999999999999999999 999999998854 77899999999999999999999999999
Q ss_pred CCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcc-cCHHHHHHHhhhcC
Q 019811 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLG 287 (335)
Q Consensus 209 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G 287 (335)
.|+.|.|.++.+....... .......++|||+|||.. +++++|+++|+.||
T Consensus 185 ~g~~l~v~~a~~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp TTEECEEEECCCC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred CCcEEEEEECCCCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 9999999998764321110 112334589999999999 99999999999999
Q ss_pred CeeeEEEEEecc-------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 288 AGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 288 ~~~i~~v~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.|..+.+.++ +|+|||+|.+.++|.+|+ .|||. .|+|++|+|
T Consensus 237 --~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~---~~~g~~i~V 285 (292)
T 2ghp_A 237 --SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS---LLGNREISV 285 (292)
T ss_dssp --CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE---EETTEEEEE
T ss_pred --CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC---EECCcEEEE
Confidence 5888888543 689999999999999999 99999 999999975
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=227.30 Aligned_cols=162 Identities=41% Similarity=0.796 Sum_probs=151.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
++|||+|||.++|+++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|+..++|..+.|+.|+|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 589999999999999999999999999999998765 35899999999999999999999999999999999987655
Q ss_pred CccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 019811 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (335)
Q Consensus 134 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (335)
. ......++|||+|||..+++++|+++|+.||.|..+.+.+++.++.++|+|||+|.+.++|.+|+..|++..++|+.|
T Consensus 81 ~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 81 Q-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp C-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred C-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 4 334556799999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEcc
Q 019811 214 RCNWAT 219 (335)
Q Consensus 214 ~v~~~~ 219 (335)
+|.|++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1e-34 Score=237.90 Aligned_cols=166 Identities=28% Similarity=0.528 Sum_probs=147.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+.++|||+|||.++|+++|+++|++||.|.+|++++++. +|||||+|.+.++|.+|++.+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44568899999999999999999999999999999998653 58999999999999999999999999999999998
Q ss_pred eccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
+....... .....+|||+|||.++++++|+++|+.||.|..+.++++. +.++|||||+|.+.++|.+|++.|+|..+
T Consensus 92 ~~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 92 SQRDPSLR-KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCCCTHHH-HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cccccccc-ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 86544322 2234689999999999999999999999999999999884 45799999999999999999999999999
Q ss_pred CCeeeEEEEccCC
Q 019811 209 GSRQIRCNWATKG 221 (335)
Q Consensus 209 ~g~~l~v~~~~~~ 221 (335)
+|+.|.|.++.++
T Consensus 169 ~g~~i~V~~a~~~ 181 (213)
T 4f02_A 169 NDRKVFVGRFKSR 181 (213)
T ss_dssp TTEECEEEECCCH
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998764
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.2e-33 Score=223.17 Aligned_cols=161 Identities=27% Similarity=0.483 Sum_probs=149.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
++++|||+|||.++++++|+++|+.||.|.++++..++. +|||||+|.+.++|.+|++.|+|..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468899999999999999999999999999999988753 5899999999999999999999999999999999987
Q ss_pred cCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
+... ....++|+|+|||..+++++|+++|+.||.|..+.+.++..++.++|+|||+|.+.++|.+|+..|++..+.|
T Consensus 82 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSS---TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 6543 3456799999999999999999999999999999999998889999999999999999999999999999977
Q ss_pred --eeeEEEEc
Q 019811 211 --RQIRCNWA 218 (335)
Q Consensus 211 --~~l~v~~~ 218 (335)
+.|+|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999985
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.8e-33 Score=231.48 Aligned_cols=169 Identities=23% Similarity=0.439 Sum_probs=152.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
...++|||+|||.++|+++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346789999999999999999999999999999998764 5799999999999999999999999999999999987
Q ss_pred ccCCCcc--------CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 019811 130 YASGQRE--------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (335)
Q Consensus 130 ~~~~~~~--------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 201 (335)
....... .....++|||+|||.++++++|+++|+.||.|..+.+.+++.++.++|+|||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6554221 22455799999999999999999999999999999999998889999999999999999999999
Q ss_pred HhCCceeCCeeeEEEEccCCC
Q 019811 202 DLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 202 ~l~~~~~~g~~l~v~~~~~~~ 222 (335)
.|++..++|+.|.|.|+..+.
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999998754
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.7e-33 Score=220.97 Aligned_cols=160 Identities=33% Similarity=0.541 Sum_probs=147.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
+++|||+|||.++++++|+++|+.||.|.++++..++. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999988762 48999999999999999999999999999999999876
Q ss_pred CCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019811 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (335)
Q Consensus 132 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (335)
... ....++|+|+|||..+++++|+++|+.||.|..+.+.++..+|.++|+|||+|.+.++|.+|+..|+|..+.|+
T Consensus 82 ~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 82 SSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred Ccc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 543 23457899999999999999999999999999999999988899999999999999999999999999999996
Q ss_pred e--eEEEEc
Q 019811 212 Q--IRCNWA 218 (335)
Q Consensus 212 ~--l~v~~~ 218 (335)
. |+|.|+
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888875
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.1e-33 Score=226.58 Aligned_cols=171 Identities=19% Similarity=0.369 Sum_probs=147.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+...++|||+|||.++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 456788999999999999999999999999999999998753 57999999999999999975 8999999999999
Q ss_pred eeccCCCcc---CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019811 128 WAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (335)
Q Consensus 128 ~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 204 (335)
++....... .....++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 986654322 223457999999999999999999999999999999999988899999999999999999999986 7
Q ss_pred CceeCCeeeEEEEccCCCCC
Q 019811 205 GKWLGSRQIRCNWATKGAGN 224 (335)
Q Consensus 205 ~~~~~g~~l~v~~~~~~~~~ 224 (335)
+..+.|+.|.|.++.++...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 99999999999999876543
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.6e-32 Score=217.60 Aligned_cols=159 Identities=23% Similarity=0.449 Sum_probs=144.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc----C-------CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCce
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~ 123 (335)
++++|||+|||.++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .++|..+.|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 56899999999999999999999999 6 666666644 4689999999999999999 89999999999
Q ss_pred eEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019811 124 IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (335)
Q Consensus 124 l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (335)
|+|.++..... ....++|||+|||..+++++|+++|+.||.|..+.+.+++.+|.++|+|||+|.+.++|.+|+..|
T Consensus 80 i~v~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 80 LKIRRPHDYQP---LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp CEEECCSSCCC---CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eeecCCcccCC---CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99998765432 344679999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCceeCCeeeEEEEcc
Q 019811 204 TGKWLGSRQIRCNWAT 219 (335)
Q Consensus 204 ~~~~~~g~~l~v~~~~ 219 (335)
++..++|+.|.|.|+.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999999973
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.8e-32 Score=217.90 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=144.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC------CCCeEEEEEcCHHHHHHHHHHhCCcccc---CceeE
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLF---GQPIK 125 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~g~afv~f~~~~~A~~a~~~l~~~~~~---g~~l~ 125 (335)
++++|||+|||.++|+++|+++|++||.|.++++.+++ ++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999874 3579999999999999999999998776 57777
Q ss_pred EeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019811 126 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 126 v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (335)
+.++..... .....++|||+|||.++++++|+++|+.||.|.++.+.++. +|.++|+|||+|.+.++|.+|+..|+|
T Consensus 82 ~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN--NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC--SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc--ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777654432 34456799999999999999999999999999999999885 588999999999999999999999999
Q ss_pred ceeC---CeeeEEEEcc
Q 019811 206 KWLG---SRQIRCNWAT 219 (335)
Q Consensus 206 ~~~~---g~~l~v~~~~ 219 (335)
..+. ++.|.|.|++
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8765 4999999974
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.1e-32 Score=225.82 Aligned_cols=159 Identities=28% Similarity=0.470 Sum_probs=141.5
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
.+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|+..+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEec
Q 019811 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~ 298 (335)
....... .....+|||+|||..+++++|+++|+.|| .|..+++.+
T Consensus 93 ~~~~~~~---------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~ 137 (213)
T 4f02_A 93 QRDPSLR---------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVC 137 (213)
T ss_dssp CCCTHHH---------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEE
T ss_pred ccccccc---------------------------------ccccccceECCcccccHHHHHHHHHhhcC--CeEEEEeec
Confidence 6432100 01126799999999999999999999999 588888765
Q ss_pred c----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 299 D----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 299 ~----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+ +|+|||+|.+.++|.+|+..|||. .|+|++|+|
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai~~lng~---~~~g~~i~V 175 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAIEKMNGM---LLNDRKVFV 175 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEE
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhCCC---EECCEEEEE
Confidence 4 689999999999999999999999 999999976
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=5e-32 Score=219.79 Aligned_cols=165 Identities=22% Similarity=0.426 Sum_probs=146.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc----C-------CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCce
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~ 123 (335)
.+++|||+|||.++|+++|+++|+.| | .|.++++ .+++|||||+|.+.++|.+|+ .|+|..+.|+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 46899999999999999999999999 5 5555555 345789999999999999999 89999999999
Q ss_pred eEEeeeccCCCc-----------------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEE
Q 019811 124 IKVNWAYASGQR-----------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 186 (335)
Q Consensus 124 l~v~~~~~~~~~-----------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~a 186 (335)
|+|.++...... ......++|||+|||..+++++|+++|+.||.|..+.+.+++.++.++|||
T Consensus 80 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a 159 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 159 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEE
T ss_pred EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEE
Confidence 999998654221 112456899999999999999999999999999999999998889999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCC
Q 019811 187 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 187 fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
||+|.+.++|.+|+..|++..++|+.|.|.|+.++.
T Consensus 160 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 160 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999997754
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3.9e-32 Score=220.12 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=138.4
Q ss_pred CcceEEEeCCC-CCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 55 TCRSVYVGNIH-TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 55 ~~~~v~v~nlp-~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
++++|||+||| ..+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 46789999999 899999999999999999999998764 6899999999999999999999999999999999985322
Q ss_pred Ccc----------------------------------CCCCcceEEECCCCccccHHHHHHHhccCCCc--eeeEEeecC
Q 019811 134 QRE----------------------------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSC--SDARVMWDQ 177 (335)
Q Consensus 134 ~~~----------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v--~~~~~~~~~ 177 (335)
... ...++++|||+|||+++++++|+++|+.||.| .++.+..+.
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 100 01234689999999999999999999999999 888888664
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe----eeEEEE
Q 019811 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR----QIRCNW 217 (335)
Q Consensus 178 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~----~l~v~~ 217 (335)
+..+|+|||+|.+.++|.+|+..||+..+.|+ ++.|.+
T Consensus 162 --~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 162 --SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp --SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 45679999999999999999999999999876 455554
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1e-32 Score=217.65 Aligned_cols=161 Identities=25% Similarity=0.405 Sum_probs=145.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
++++|||+|||.++|+++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 56899999999999999999999999999999998764 468999999999999999974 678999999999875
Q ss_pred cCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
+... ....++|||+|||.++++++|+++|+.||.|..+.+.+++.+|.++|+|||+|.+.++|.+|++ +++..++|
T Consensus 80 ~~~~---~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 80 PRDE---QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CHHH---HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred chhh---ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 4332 2334689999999999999999999999999999999998889999999999999999999998 89999999
Q ss_pred eeeEEEEccCC
Q 019811 211 RQIRCNWATKG 221 (335)
Q Consensus 211 ~~l~v~~~~~~ 221 (335)
+.|.|.|+.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999998764
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.8e-31 Score=221.07 Aligned_cols=164 Identities=20% Similarity=0.334 Sum_probs=145.4
Q ss_pred CCCCcceEEEeCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 52 DPSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
...++++|||+|||. ++++++|+++|+.||.|.+|++..++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345678999999999 99999999999999999999999877 6899999999999999999999999999999999986
Q ss_pred cCCCc--------------------------------cCCCCcceEEECCCCccccHHHHHHHhccCC-CceeeEEeecC
Q 019811 131 ASGQR--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQ 177 (335)
Q Consensus 131 ~~~~~--------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~ 177 (335)
..... ....++++|||+|||..+++++|+++|+.|| .|..+.++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 54210 0012357899999999999999999999999 9999988642
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEEccCC
Q 019811 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (335)
Q Consensus 178 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 221 (335)
.+|+|||+|.+.++|.+|+..|++..+. |+.|+|.|++++
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3689999999999999999999999999 999999998753
No 16
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=2.9e-31 Score=209.50 Aligned_cols=156 Identities=33% Similarity=0.505 Sum_probs=141.2
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
++++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.+++..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~ 299 (335)
.... ....++|+|+|||..+++++|+++|+.|| .+..+.+.++
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~ 124 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRD 124 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS--CEEEEEEEEC
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC--cEEEEEEEEc
Confidence 5431 12237899999999999999999999999 5888887755
Q ss_pred ------cceEEEEeCCHHHHHHHHHhhcCCCcccccC--ccccC
Q 019811 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKV 335 (335)
Q Consensus 300 ------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g--~~l~v 335 (335)
+|+|||+|.+.++|.+|+..|+|. .++| ++|+|
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~l~V 165 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNV---IPEGGSQPLSV 165 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEE
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCC---EecCCCeEEEE
Confidence 489999999999999999999999 9987 88765
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=5.1e-31 Score=225.90 Aligned_cols=168 Identities=24% Similarity=0.373 Sum_probs=155.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..++|||+|||.++++++|+++|+.||.|.++++..++. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 346899999999999999999999999999999987653 5899999999999999999999999999999999998
Q ss_pred cCCCccCCCCcceEEECCCCccc-cHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 019811 131 ASGQREDTSGHFNIFVGDLSPEV-TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (335)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (335)
+..........++|||+|||.++ ++++|+++|+.||.|..+.+.++. +|.++|+|||+|.+.++|.+|+..|+|..++
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 87766666778899999999995 999999999999999999999885 7889999999999999999999999999999
Q ss_pred CeeeEEEEccCCCC
Q 019811 210 SRQIRCNWATKGAG 223 (335)
Q Consensus 210 g~~l~v~~~~~~~~ 223 (335)
|+.|.|.|+.++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999977553
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=7.1e-31 Score=207.06 Aligned_cols=154 Identities=29% Similarity=0.456 Sum_probs=139.1
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
+++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46899999999999999999999999999999999988899999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc-
Q 019811 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~- 299 (335)
.... ...++|+|+|||..+++++|+++|+.|| .+..+.+..+
T Consensus 82 ~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SSAS-----------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQ 124 (167)
T ss_dssp CCGG-----------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT
T ss_pred Cccc-----------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC--CEeEEEEEecC
Confidence 3210 1237899999999999999999999999 5777877654
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 300 -----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
+|+|||+|.+.++|.+|+..|||. .++|+.+.
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~ 161 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGATEP 161 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCC---ccCCCccc
Confidence 689999999999999999999999 99998743
No 19
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.4e-31 Score=212.73 Aligned_cols=163 Identities=16% Similarity=0.326 Sum_probs=142.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEE---eecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~---~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.+.+.++|||+|||.++|+++|+++|+.||.+..+.+ ...+++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4567889999999999999999999999987655222 22456799999999999999999 5999999999999999
Q ss_pred eccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
+...... .....++|||+|||.++++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..|++..+
T Consensus 88 ~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 88 PKGRDSK-KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CCCSSCS-TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred CCCcccc-ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 8765432 33456799999999999999999999999988766 35788999999999999999999999999999
Q ss_pred CCeeeEEEEccCC
Q 019811 209 GSRQIRCNWATKG 221 (335)
Q Consensus 209 ~g~~l~v~~~~~~ 221 (335)
+|+.|.|.|+.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999999764
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.4e-30 Score=223.00 Aligned_cols=162 Identities=19% Similarity=0.402 Sum_probs=143.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HHHhccCCceeEEEeec-CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~~~~~-~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
..++++|||+|||.++++++|+ ++|+.||.|.+|++.++ +++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4567899999999999999966 89999999999998864 357999999999999999999999999999999999
Q ss_pred eeccCCCc------------------------------------------------------------------------
Q 019811 128 WAYASGQR------------------------------------------------------------------------ 135 (335)
Q Consensus 128 ~~~~~~~~------------------------------------------------------------------------ 135 (335)
|+......
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 98654310
Q ss_pred ------------------------------------cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCC
Q 019811 136 ------------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT 179 (335)
Q Consensus 136 ------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~ 179 (335)
.....+++|||+|||..+++++|+++|+.||.|.++.++.++
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-- 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-- 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--
Confidence 112245789999999999999999999999999999998542
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEEcc
Q 019811 180 GRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (335)
Q Consensus 180 ~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 219 (335)
+|+|||+|.+.++|.+|+..|++..+. |+.|+|.|++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999985
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.9e-31 Score=214.49 Aligned_cols=160 Identities=20% Similarity=0.347 Sum_probs=143.1
Q ss_pred cceEEEeCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCC
Q 019811 56 CRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (335)
Q Consensus 56 ~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (335)
+++|||+|||. ++++++|+++|+.||.|.+|++..++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 57899999999 99999999999999999999998876 68999999999999999999999999999999999864421
Q ss_pred c--------------------------------cCCCCcceEEECCCCccccHHHHHHHhccCC-CceeeEEeecCCCCC
Q 019811 135 R--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGR 181 (335)
Q Consensus 135 ~--------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~ 181 (335)
. ....++++|||+|||..+++++|+++|+.|| .|..+.+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----- 156 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----- 156 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----
Confidence 0 0013367899999999999999999999999 9999988643
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEEccCC
Q 019811 182 SRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (335)
Q Consensus 182 ~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 221 (335)
.+|+|||+|.+.++|.+|+..|++..++ |+.|+|.|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3689999999999999999999999999 999999998753
No 22
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.5e-31 Score=206.13 Aligned_cols=155 Identities=23% Similarity=0.463 Sum_probs=138.1
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++|||+|||.++++++|+++|+.||.|.++.+++++ ++.++|+|||+|.+.++|.+|+..+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999885 4678999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc--
Q 019811 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~-- 299 (335)
... ...+.++|||+|||.++++++|+++|+.|| .+..+.+..+
T Consensus 80 ~~~---------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS---------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQ 124 (166)
T ss_dssp CCC---------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEECTT
T ss_pred CCC---------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEecCC
Confidence 321 112347899999999999999999999999 4778877644
Q ss_pred ----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 ----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|+|||+|.+.++|.+|+..|||. .++|++|+|
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v 161 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRI 161 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCC---ccCCcEEEE
Confidence 689999999999999999999999 999999975
No 23
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.1e-30 Score=214.67 Aligned_cols=190 Identities=22% Similarity=0.347 Sum_probs=147.4
Q ss_pred CCCCcceEEECCCCc-cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 137 DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
...++++|||+|||. ++++++|+++|+.||.|..+.+.+++ +|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998763 789999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEE
Q 019811 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 295 (335)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~ 295 (335)
.++...............................+.........++.++|||+|||..+++++|+++|+.|| ..|..++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS-CCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC-CCeeEEE
Confidence 999765433222111111111111111111111111111223345679999999999999999999999998 2488888
Q ss_pred E-ecccceEEEEeCCHHHHHHHHHhhcCCCccccc-CccccC
Q 019811 296 V-QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKV 335 (335)
Q Consensus 296 ~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~-g~~l~v 335 (335)
+ .+++|+|||+|.+.++|.+|+..|+|. .++ |++|+|
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~~g~~l~v 222 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRV 222 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTC---BSSSSCBCEE
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCC---ccCCCCeEEE
Confidence 8 457999999999999999999999999 999 999875
No 24
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.5e-30 Score=218.41 Aligned_cols=160 Identities=27% Similarity=0.394 Sum_probs=145.5
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.......++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..++|..+.|+.|+|.++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 334566789999999999999999999999999999998654 589999999999999999999999999999999998
Q ss_pred ccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-Ccee
Q 019811 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWL 208 (335)
Q Consensus 130 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~~ 208 (335)
.+ +.+|||+|||..+++++|+++|+.||.|..+.++++ .+|.++|+|||+|.+.++|.+|+..|+ +..+
T Consensus 94 ~~---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 94 TH---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp CC---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cc---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 64 358999999999999999999999999999999999 588999999999999999999999994 5555
Q ss_pred C---CeeeEEEEccCC
Q 019811 209 G---SRQIRCNWATKG 221 (335)
Q Consensus 209 ~---g~~l~v~~~~~~ 221 (335)
. ++.|.|.++...
T Consensus 164 ~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSSSCCBCEEEECCCE
T ss_pred ecCCCceEEEeecccc
Confidence 4 999999998764
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.4e-30 Score=209.82 Aligned_cols=186 Identities=22% Similarity=0.334 Sum_probs=145.2
Q ss_pred cceEEECCCCc-cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 141 HFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 141 ~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
+++|||+|||. ++++++|+++|+.||.|..+.+++++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999998663 6899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEe-c
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ-R 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~-~ 298 (335)
..............................+.........+++++|||+|||..+++++|+++|+.|| ..+..+++. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT-SCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC-CCceEEEEEeC
Confidence 76433222211111111111111111111112222223345679999999999999999999999999 248888884 4
Q ss_pred ccceEEEEeCCHHHHHHHHHhhcCCCccccc-CccccC
Q 019811 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKV 335 (335)
Q Consensus 299 ~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~-g~~l~v 335 (335)
++|+|||+|.+.++|.+|+..|+|. .++ |++|+|
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v 191 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRV 191 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSS---CCSSCCSCCE
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCC---ccCCCCeEEE
Confidence 6899999999999999999999999 899 999875
No 26
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.3e-30 Score=224.28 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=146.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccC-CceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
...++|||+|||.++++++|+++|+.|| .|.+|++..++ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578899999999999999999999999 99999998765 5799999999999999999999999999999999998
Q ss_pred ccCCCcc----CCCCcceEEECCCCcc-ccHHHHHHHhccCCCceeeEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHh
Q 019811 130 YASGQRE----DTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDL 203 (335)
Q Consensus 130 ~~~~~~~----~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l 203 (335)
.+..... .....++|||+|||.. +++++|+++|+.||.|..+.++++.. +|.++|+|||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 7655432 3355689999999999 99999999999999999999998865 4889999999999999999999 99
Q ss_pred CCceeCCeeeEEEEccCC
Q 019811 204 TGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 204 ~~~~~~g~~l~v~~~~~~ 221 (335)
+|..++|+.|.|.|+.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999999764
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3.2e-30 Score=208.77 Aligned_cols=163 Identities=26% Similarity=0.462 Sum_probs=139.1
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445668999999999999999999999999999999999988899999999999999999999975 8999999999999
Q ss_pred EccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE
Q 019811 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~ 296 (335)
++........ +......++|||+|||.++++++|+++|+.|| .|..+.+
T Consensus 88 ~~~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i 136 (196)
T 1l3k_A 88 RAVSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEI 136 (196)
T ss_dssp ECCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS--CEEEEEE
T ss_pred cccCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEE
Confidence 9865432110 11123348999999999999999999999999 5888877
Q ss_pred ecc------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 297 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 297 ~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..+ +|+|||+|.+.++|.+|+.. +|. .|+|+.|+|
T Consensus 137 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~---~~~G~~i~v 177 (196)
T 1l3k_A 137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH---TVNGHNCEV 177 (196)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC---EETTEECEE
T ss_pred eecCCCCCccceEEEEECCHHHHHHHHHh-CCc---EECCEEEEE
Confidence 654 68999999999999999976 788 999999875
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=3.9e-30 Score=208.35 Aligned_cols=185 Identities=13% Similarity=0.159 Sum_probs=137.0
Q ss_pred CcceEEECCCC-ccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 140 GHFNIFVGDLS-PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 140 ~~~~l~v~nlp-~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
++++|||+||| ..+++++|+++|+.||.|.+++++++ .+|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999999999999854 3689999999999999999999999999999999998
Q ss_pred cCCCCCCCCC-CCccccc-chhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE
Q 019811 219 TKGAGNNEDK-QSSDAKS-VVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (335)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~ 296 (335)
+......... ....... ........................+++++|||+|||+++++++|+++|+.||.+.+..+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 7644211100 0000000 0000000000000000000112235668999999999999999999999999532377887
Q ss_pred ecc----cceEEEEeCCHHHHHHHHHhhcCCCcccccCcc
Q 019811 297 QRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (335)
Q Consensus 297 ~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~ 332 (335)
..+ +|+|||+|.+.++|.+|+..|||. .++|+.
T Consensus 158 ~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~---~~~g~~ 194 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDSKSDALETLGFLNHY---QMKNPN 194 (205)
T ss_dssp CSCCSSSSEEEEEECSSHHHHHHHHHHHTTC---EECCSS
T ss_pred EcCCCCCceEEEEEeCCHHHHHHHHHHhCCC---CccCCC
Confidence 654 489999999999999999999999 898874
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=4.9e-30 Score=203.83 Aligned_cols=157 Identities=26% Similarity=0.397 Sum_probs=136.5
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---CeeeE
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIR 214 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 214 (335)
..++|||+|||.++++++|+++|+.||.|.++.+++++.++ .++|||||+|.+.++|.+|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998776 78999999999999999999999998765 67788
Q ss_pred EEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEE
Q 019811 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (335)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v 294 (335)
+.++...... ....++|||+|||.++++++|+++|+.|| .|..+
T Consensus 82 ~~~~~~~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v 125 (175)
T 3nmr_A 82 MKPADSEKNN----------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEEC 125 (175)
T ss_dssp EEECGGGCCS----------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEE
T ss_pred Eccccccccc----------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEE
Confidence 8776543221 11237899999999999999999999999 58888
Q ss_pred EEecc-----cceEEEEeCCHHHHHHHHHhhcCCCccccc---CccccC
Q 019811 295 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKV 335 (335)
Q Consensus 295 ~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~---g~~l~v 335 (335)
.+.++ +|+|||+|.+.++|.+|+..|||. .+. |++|+|
T Consensus 126 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~~~l~V 171 (175)
T 3nmr_A 126 RILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA---QTMEGCSSPMVV 171 (175)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS---CCCTTCSSCCEE
T ss_pred EEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC---cccCCCCCCeEE
Confidence 88765 789999999999999999999998 555 488875
No 30
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.3e-30 Score=212.00 Aligned_cols=166 Identities=23% Similarity=0.463 Sum_probs=139.4
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46899999999999999999999999999999999988899999999999999999999999999999999999988754
Q ss_pred CCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc-
Q 019811 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~- 299 (335)
...... . .... .......++|||+|||.++++++|+++|+.|| .|..+.+.++
T Consensus 108 ~~~~~~-------~-~~~~----------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~ 161 (216)
T 2qfj_A 108 IGQAQP-------I-IDQL----------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFG--KIKSATLARDP 161 (216)
T ss_dssp CGGGHH-------H-HHHH----------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS--CEEEEEEEECT
T ss_pred ccccch-------h-hhhh----------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccC--CeeEEEEEecC
Confidence 321100 0 0000 00112347899999999999999999999999 5888888765
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 -----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|+|||+|.+.++|.+|+..|||. .|+|+.|+|
T Consensus 162 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~---~~~g~~i~V 199 (216)
T 2qfj_A 162 TTGKHKGYGFIEYEKAQSSQDAVSSMNLF---DLGGQYLRV 199 (216)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC---BCSSSBCEE
T ss_pred CCCCcCceEEEEecCHHHHHHHHHHccCC---EeCCcEEEE
Confidence 689999999999999999999999 999999975
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.1e-29 Score=215.59 Aligned_cols=190 Identities=20% Similarity=0.304 Sum_probs=143.9
Q ss_pred CCCcceEEECCCCccccHHHHH----HHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 019811 138 TSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (335)
..++++|||+|||.++++++|+ ++|+.||.|.++.+.+ ++.++|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999966 8999999999998884 57889999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCcccccc-----------------hhc-----------cCCC----------------------
Q 019811 214 RCNWATKGAGNNEDKQSSDAKSV-----------------VEL-----------TNGS---------------------- 243 (335)
Q Consensus 214 ~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~-----------~~~~---------------------- 243 (335)
+|.|+.................. ... ....
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99998665421110000000000 000 0000
Q ss_pred --------CcCCc------------------CCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEe
Q 019811 244 --------SEDGK------------------ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (335)
Q Consensus 244 --------~~~~~------------------~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~ 297 (335)
...+. ............++++|||+|||.++++++|+++|+.|| .|.++++.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~i~~v~~~ 240 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP--GFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--CeEEEEEe
Confidence 00000 000000112344568999999999999999999999999 58899988
Q ss_pred ccc-ceEEEEeCCHHHHHHHHHhhcCCCccccc-CccccC
Q 019811 298 RDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKV 335 (335)
Q Consensus 298 ~~~-g~afV~f~~~~~a~~A~~~l~g~~~~~~~-g~~l~v 335 (335)
.++ |+|||+|.+.++|.+|+..|||. .|+ |+.|+|
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v 277 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGF---KITQNNAMKI 277 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCc---EeCCCCEEEE
Confidence 876 99999999999999999999999 998 999876
No 32
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=4.1e-30 Score=202.70 Aligned_cols=153 Identities=26% Similarity=0.506 Sum_probs=135.2
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
++++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35799999999999999999999999999999999998889999999999999999999998 4678999999998875
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~ 299 (335)
.... ....++|||+|||.++++++|+++|+.|| .|..+.+..+
T Consensus 80 ~~~~-----------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~ 122 (167)
T 2cjk_A 80 PRDE-----------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWG--TIIDAQLMLD 122 (167)
T ss_dssp CHHH-----------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTS--CCSEEECCCS
T ss_pred chhh-----------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCc--cEEEEEEEEc
Confidence 4210 01136899999999999999999999999 5778877654
Q ss_pred ------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 300 ------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+|+|||+|.+.++|.+|++ ++|. .++|++|+|
T Consensus 123 ~~~g~~~g~afV~f~~~~~a~~A~~-~~~~---~~~g~~i~V 160 (167)
T 2cjk_A 123 KDTGQSRGFGFVTYDSADAVDRVCQ-NKFI---DFKDRKIEI 160 (167)
T ss_dssp SSSSTTSEEEEEEESSHHHHHHHHH-CSEE---CSSSSCEEE
T ss_pred CCCCccceEEEEEECCHHHHHHHHh-CCCE---EeCCeEEEE
Confidence 5899999999999999997 8999 999999975
No 33
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=6.6e-30 Score=203.10 Aligned_cols=159 Identities=23% Similarity=0.384 Sum_probs=134.5
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|..||.+..+ ++++..++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 44567899999999999999999999999987663 34444667899999999999999999995 99999999999999
Q ss_pred EccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEE-E
Q 019811 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV-R 295 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v-~ 295 (335)
++...... .....++|||+|||.++++++|+++|+.|| .+..+ .
T Consensus 87 ~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g--~v~~~~~ 131 (175)
T 1fje_B 87 KPKGRDSK---------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLVSQ 131 (175)
T ss_dssp CCCCSSCS---------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCS--EEEEECS
T ss_pred cCCCcccc---------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcC--eEEEecC
Confidence 98764321 112347999999999999999999999999 45555 1
Q ss_pred EecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 296 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 296 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..+.+|+|||+|.+.++|.+|+..|+|. .|+|+.|+|
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v 168 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGA---EIDGRSVSL 168 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEE---EETTEEEEE
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCC---EECCeEEEE
Confidence 1234799999999999999999999999 999999875
No 34
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.3e-28 Score=195.02 Aligned_cols=149 Identities=17% Similarity=0.344 Sum_probs=129.7
Q ss_pred CcceEEECCCCccccHHHHHHHhccC----C-------CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVY----P-------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
+.++|||+|||.++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35799999999999999999999999 5 55555544 55899999999999999999 8999999
Q ss_pred CCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCC
Q 019811 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288 (335)
Q Consensus 209 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 288 (335)
.|+.|.|.++...... ...++|||+|||..+++++|+++|++||
T Consensus 76 ~g~~i~v~~~~~~~~~-----------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G- 119 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-----------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFG- 119 (172)
T ss_dssp TTEECEEECCSSCCCC-----------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTS-
T ss_pred cCceeeecCCcccCCC-----------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcC-
Confidence 9999999986543211 1147899999999999999999999999
Q ss_pred eeeEEEEEecc------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 289 GVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 289 ~~i~~v~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.+..+.+.++ +|+|||+|.+.++|.+|+..|||. .++|++|+|
T Consensus 120 -~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V 168 (172)
T 2g4b_A 120 -PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLV 168 (172)
T ss_dssp -CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC---EETTEECEE
T ss_pred -CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC---EECCeEEEE
Confidence 5788888655 689999999999999999999999 999999975
No 35
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=4.6e-28 Score=196.38 Aligned_cols=168 Identities=15% Similarity=0.273 Sum_probs=133.4
Q ss_pred cceEEECCCCccccHHHHHHHhccCC-----------CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYP-----------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g-----------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (335)
.++|||+|||.++++++|+++|+.|| .|..+.+ +.++|||||+|.+.++|.+|+ .|++..+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 47999999999999999999999995 3444433 466899999999999999999 89999999
Q ss_pred CeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCe
Q 019811 210 SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289 (335)
Q Consensus 210 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~ 289 (335)
|+.|.|.++.............. ...............++|||+|||.++++++|+++|+.||
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-- 139 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPS---------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG-- 139 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSS---------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS--
T ss_pred CceEEEeCCCCCCCCCCCcCCCc---------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--
Confidence 99999999876543221110000 0000001112234568999999999999999999999999
Q ss_pred eeEEEEEecc------cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 290 VIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 290 ~i~~v~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.+..+.+..+ +|+|||+|.+.++|.+|+..|+|. .|+|+.|+|
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v 188 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLV 188 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC---EETTEECEE
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEE
Confidence 5788888755 689999999999999999999999 999999875
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.9e-27 Score=200.74 Aligned_cols=148 Identities=29% Similarity=0.477 Sum_probs=130.0
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++|+++|+++|+.||.|..+.+. .++|||||+|.+.++|.+|+..+++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 34556799999999999999999999999999999886 347899999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEE
Q 019811 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~ 296 (335)
++.. ..+|||+|||..+++++|+++|+.|| .|..+.+
T Consensus 92 ~a~~-----------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i 128 (261)
T 3sde_A 92 FATH-----------------------------------------GAALTVKNLSPVVSNELLEQAFSQFG--PVEKAVV 128 (261)
T ss_dssp ECCC-----------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEE
T ss_pred eccc-----------------------------------------CCcccccCCCCCCCHHHHHHHHHhcC--CeEEEEe
Confidence 9853 26899999999999999999999999 5888877
Q ss_pred ecc-----cceEEEEeCCHHHHHHHHHhhcCCCccccc---CccccC
Q 019811 297 QRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKV 335 (335)
Q Consensus 297 ~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~~~~---g~~l~v 335 (335)
..+ +|+|||+|.+.++|.+|+..|++.. .+. |++|.|
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~--~~~~~~~r~i~v 173 (261)
T 3sde_A 129 VVDDRGRATGKGFVEFAAKPPARKALERCGDGA--FLLTTTPRPVIV 173 (261)
T ss_dssp EEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC--EESSSSCCBCEE
T ss_pred eeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe--EEecCCCceEEE
Confidence 654 7899999999999999999995431 443 777754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.8e-22 Score=157.13 Aligned_cols=139 Identities=24% Similarity=0.297 Sum_probs=111.2
Q ss_pred eEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCcee-------EEeeeccC---CCccCCCCcceEEECCCCcc
Q 019811 85 GCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI-------KVNWAYAS---GQREDTSGHFNIFVGDLSPE 152 (335)
Q Consensus 85 ~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l-------~v~~~~~~---~~~~~~~~~~~l~v~nlp~~ 152 (335)
.++++.++ .+|||||+|.+.++|++|+..+++....+..+ ........ .........++|||+|||.+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 35555554 46999999999999999998876533322222 22221111 11223345689999999999
Q ss_pred ccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCC
Q 019811 153 VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (335)
Q Consensus 153 ~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 223 (335)
+++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++..+..
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999987543
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=8.2e-23 Score=149.81 Aligned_cols=103 Identities=23% Similarity=0.470 Sum_probs=73.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC--CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~--~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
.+.+|||+|||.++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 356799999999999999999999999999999998764 689999999999999999999999999999999998765
Q ss_pred CCcc-----CCCCcceEEECCCCccccHHH
Q 019811 133 GQRE-----DTSGHFNIFVGDLSPEVTDAT 157 (335)
Q Consensus 133 ~~~~-----~~~~~~~l~v~nlp~~~t~~~ 157 (335)
..+. .....++|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 4432 223345799999999998763
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=9.7e-22 Score=144.09 Aligned_cols=110 Identities=26% Similarity=0.515 Sum_probs=74.7
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|||+|||+++++++|+++|+.||.|.++.++++. +.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999885 3579999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHH
Q 019811 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~ 278 (335)
.+....... ........+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-------------------------------------------------------
T ss_pred Ccccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 643221111 01112235799999999998863
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.6e-21 Score=150.28 Aligned_cols=125 Identities=20% Similarity=0.282 Sum_probs=110.4
Q ss_pred CCCCeEEEEEcCHHHHHHHHHHh-CCccccCceeEEeeeccC-------------CCccCCCCcceEEECCCCccccHHH
Q 019811 92 DKSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAYAS-------------GQREDTSGHFNIFVGDLSPEVTDAT 157 (335)
Q Consensus 92 ~~~g~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~~~-------------~~~~~~~~~~~l~v~nlp~~~t~~~ 157 (335)
+-+|+++|+|.+.++|++|+..+ ||..+.| .+.+.++... .........++|||+|||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 34689999999999999999999 9999999 9999887542 1123345568999999999999999
Q ss_pred HHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCC
Q 019811 158 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 158 l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
|+++|+.||.|.++.++++ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.|+..+.
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999865 57899999999999999999999999999999999987653
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.1e-20 Score=145.54 Aligned_cols=131 Identities=23% Similarity=0.297 Sum_probs=105.9
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCC
Q 019811 180 GRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPEN 258 (335)
Q Consensus 180 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
...+|+++|+|.+.++|.+|+..+ ++..++| .+.+.++.......... ...........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-------------------HHHHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-------------------SSCCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-------------------ccccccccccC
Confidence 467899999999999999999999 9999999 99998775432110000 00001111223
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc-cceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 259 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..+.++|||+|||+++++++|+++|+.|| .|.++++.++ +|+|||+|.+.++|.+|+..|||. .++|++|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v 142 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYG--PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR---TLCGCRVRV 142 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHS--CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS---CSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEE
Confidence 34558999999999999999999999999 5899999887 999999999999999999999999 999999976
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=131.76 Aligned_cols=80 Identities=33% Similarity=0.517 Sum_probs=77.1
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
+++|||+|||.++|+++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+.+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
No 43
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=3.4e-20 Score=136.15 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=93.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
+..+++|||+|||.++++++|+++|+.||.|.+|.+..+. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4456889999999999999999999999999999998765 479999999999999999999999999999999999875
Q ss_pred CCCccCCCCcceEEECCCCccccHHHHHHHhccCCC
Q 019811 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 167 (335)
Q Consensus 132 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~ 167 (335)
.... .+++...++++|.++|++||.
T Consensus 85 ~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 4422 578888999999999999984
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=128.86 Aligned_cols=77 Identities=36% Similarity=0.551 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..++|||+|||.++|+++|+++|++||.|.+|++.+++. +|||||+|.+.++|.+|++.|||..+.|++|+|.|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 356799999999999999999999999999999998653 5899999999999999999999999999999999986
Q ss_pred c
Q 019811 131 A 131 (335)
Q Consensus 131 ~ 131 (335)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 45
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.3e-19 Score=139.53 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=97.9
Q ss_pred eeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCCCCCCCCCcccccchhccCCCCcCCcC
Q 019811 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKE 249 (335)
Q Consensus 170 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (335)
.+.+..+.. .++|||||+|.+.++|++|+..+++....+..+.+.......... ..
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 57 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT----------------------EG 57 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE----------------------CC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc----------------------cc
Confidence 345666633 689999999999999999998877543322222222111000000 00
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc------cceEEEEeCCHHHHHHHHHhhcCC
Q 019811 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 250 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~------~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
.............++|||+|||+++++++|+++|+.|| .|..+.+..+ +|+|||+|.+.++|.+|+..|||.
T Consensus 58 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 58 SHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 00011112223458999999999999999999999999 5888888754 689999999999999999999999
Q ss_pred CcccccCccccC
Q 019811 324 QSSYLFGKQMKV 335 (335)
Q Consensus 324 ~~~~~~g~~l~v 335 (335)
.|+|++|+|
T Consensus 136 ---~~~g~~l~v 144 (158)
T 2kn4_A 136 ---VLDGRELRV 144 (158)
T ss_dssp ---ESSSSEEEE
T ss_pred ---EECCeEEEE
Confidence 999999975
No 46
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=127.59 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=73.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC--CccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~~~ 130 (335)
+.+.++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|+ +..+.|++|+|.++.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 456788999999999999999999999999999999876 5899999999999999999886 478999999999997
Q ss_pred cCCCc
Q 019811 131 ASGQR 135 (335)
Q Consensus 131 ~~~~~ 135 (335)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76544
No 47
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=130.51 Aligned_cols=93 Identities=27% Similarity=0.436 Sum_probs=82.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCcc
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (335)
++|||+|||.++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 47999999999999999999999999999999888 77999999999999999999999999999999999997655322
Q ss_pred -------CCCCcceEEECCCC
Q 019811 137 -------DTSGHFNIFVGDLS 150 (335)
Q Consensus 137 -------~~~~~~~l~v~nlp 150 (335)
.......+||+||+
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 12235689999986
No 48
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=9.8e-20 Score=137.07 Aligned_cols=124 Identities=25% Similarity=0.384 Sum_probs=82.7
Q ss_pred eEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEee
Q 019811 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 175 (335)
Q Consensus 96 ~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~ 175 (335)
++|.+|.+...|..|+..++|....|+. .+.+.. ........++|||+|||.++++++|+++|+.||.|..+.+++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR---PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSCC---SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC---CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 6788888999999999988887766654 222222 223344567999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCC
Q 019811 176 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (335)
Q Consensus 176 ~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 223 (335)
++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.|+.....
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 988899999999999999999999999999999999999999987554
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=127.18 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=77.0
Q ss_pred cceEEECCCCccccHHHHHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceeCCeeeEEEEc
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWLGSRQIRCNWA 218 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~ 218 (335)
+++|||+|||+++|+++|+++|+.|| .|.++.+++++.++.++|||||+|.+.++|.+|++.++ +..++|+.|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999998774 56799999999999
Q ss_pred cCCCCC
Q 019811 219 TKGAGN 224 (335)
Q Consensus 219 ~~~~~~ 224 (335)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-18 Score=124.83 Aligned_cols=86 Identities=37% Similarity=0.789 Sum_probs=77.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
......++|||+|||.++++++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345667899999999999999999999999999999998865 468999999999999999999999999999999999
Q ss_pred eccCCCcc
Q 019811 129 AYASGQRE 136 (335)
Q Consensus 129 ~~~~~~~~ 136 (335)
+.+.....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 98765443
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=126.72 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=78.7
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
.+.++|||+|||+++++++|+++|++||.|.++.+++|+.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 019811 219 TKG 221 (335)
Q Consensus 219 ~~~ 221 (335)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 52
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=123.31 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=71.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCcc--ccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~ 130 (335)
..++++|||+|||.++|+++|+++|++||.|.+|++++ .+|+|||+|.+.++|.+|++.|++.. +.|++|+|.++.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 45678899999999999999999999999999999875 45899999999999999999998875 789999999997
Q ss_pred cCC
Q 019811 131 ASG 133 (335)
Q Consensus 131 ~~~ 133 (335)
.+.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 543
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-18 Score=123.68 Aligned_cols=86 Identities=26% Similarity=0.350 Sum_probs=77.7
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.....+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445677899999999999999999999999999999998865 37899999999999999999999999999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99876543
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=125.19 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=72.0
Q ss_pred CCCCcceEEEeCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCc--cccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 128 (335)
...++++|||+|||. ++|+++|+++|++||.|.+|++++++ |||||+|.+.++|..|++.|++. .+.|++|+|.+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 455788999999999 99999999999999999999998764 79999999999999999988864 59999999999
Q ss_pred eccCC
Q 019811 129 AYASG 133 (335)
Q Consensus 129 ~~~~~ 133 (335)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 97544
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=125.58 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=70.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccC-CceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHh-CCccccCceeEEeee
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWA 129 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~ 129 (335)
+++|||+|||.++|+++|+++|+.|| .|.+|++++++ ++|||||+|.+.++|.+|++.+ ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999998764 4699999999999999999877 456799999999999
Q ss_pred ccCCC
Q 019811 130 YASGQ 134 (335)
Q Consensus 130 ~~~~~ 134 (335)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-18 Score=123.88 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC-CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..+.. +|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 455678999999999999999999999999999999977653 7899999999999999999999999999999999997
Q ss_pred cCCCc
Q 019811 131 ASGQR 135 (335)
Q Consensus 131 ~~~~~ 135 (335)
+....
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 57
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=9.3e-19 Score=117.89 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=68.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 45699999999999999999999999999999866 6799999999999999999999999999999999877
No 58
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=122.07 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHh--CCccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~ 130 (335)
..++++|||+|||.++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.| ++..+.|++|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 456788999999999999999999999999999988776 689999999999999999976 5678999999999997
Q ss_pred cCCCc
Q 019811 131 ASGQR 135 (335)
Q Consensus 131 ~~~~~ 135 (335)
.+...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 66543
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=3.7e-18 Score=125.15 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=76.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345668899999999999999999999999999999988763 4799999999999999999999999999999999
Q ss_pred eeccCCCcc
Q 019811 128 WAYASGQRE 136 (335)
Q Consensus 128 ~~~~~~~~~ 136 (335)
++.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998765543
No 60
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=123.54 Aligned_cols=85 Identities=24% Similarity=0.443 Sum_probs=76.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35567899999999999999999999999999999998864 46899999999999999999999999999999999
Q ss_pred eeccCCCcc
Q 019811 128 WAYASGQRE 136 (335)
Q Consensus 128 ~~~~~~~~~ 136 (335)
++.+.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 998766443
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=124.43 Aligned_cols=86 Identities=22% Similarity=0.439 Sum_probs=77.7
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec--CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+.+.++|||+|||.++++++|+++|+.||.|.+|++..+ ..+|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567889999999999999999999999999999999987 4468999999999999999999999999999999999
Q ss_pred eccCCCcc
Q 019811 129 AYASGQRE 136 (335)
Q Consensus 129 ~~~~~~~~ 136 (335)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98766543
No 62
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=122.12 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=75.3
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
...+...++|||+|||.++++++|+++|+.||.|. +.++.++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 33455678999999999999999999999999996 77778888899999999999999999999999999999999998
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=126.72 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=75.5
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.......++|||+|||.++++++|+++|++||.|.+|++..++ .+|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3345677899999999999999999999999999999998764 47999999999999999999999999999999999
Q ss_pred eeccC
Q 019811 128 WAYAS 132 (335)
Q Consensus 128 ~~~~~ 132 (335)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 64
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-18 Score=123.90 Aligned_cols=85 Identities=33% Similarity=0.608 Sum_probs=76.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
..+...++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345667899999999999999999999999999999998865 3689999999999999999999999999999999
Q ss_pred eeeccCCCc
Q 019811 127 NWAYASGQR 135 (335)
Q Consensus 127 ~~~~~~~~~ 135 (335)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999776543
No 65
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=123.98 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=75.0
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCC--ceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCeee
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPS--CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGSRQI 213 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~~l 213 (335)
.-++|||+|||+++|+++|+++|++||. +.++++++|+.+|.++|||||+|.+.++|.+|++.|++. .++|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 679999999999999999999999999999999999986 5899999
Q ss_pred EEEEccC
Q 019811 214 RCNWATK 220 (335)
Q Consensus 214 ~v~~~~~ 220 (335)
.|+|++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=122.32 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=76.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998765 468999999999999999999999999999999999
Q ss_pred eccCCCc
Q 019811 129 AYASGQR 135 (335)
Q Consensus 129 ~~~~~~~ 135 (335)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876654
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=1.5e-18 Score=129.45 Aligned_cols=84 Identities=24% Similarity=0.345 Sum_probs=76.2
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
...+.+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|+|..|.|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345677899999999999999999999999999999998763 468999999999999999999999999999999
Q ss_pred EeeeccCC
Q 019811 126 VNWAYASG 133 (335)
Q Consensus 126 v~~~~~~~ 133 (335)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997654
No 68
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=122.34 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCC--ccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (335)
..++++|||+|||.++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.|++ ..+.|++|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 345688999999999999999999999999999998765 58999999999999999998865 45999999999997
Q ss_pred cCCC
Q 019811 131 ASGQ 134 (335)
Q Consensus 131 ~~~~ 134 (335)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6554
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-18 Score=121.04 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=75.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|++ |++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999998764 46899999999999999998 99999999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876544
No 70
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=120.55 Aligned_cols=83 Identities=30% Similarity=0.558 Sum_probs=75.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.++++|||+|||.++++++|+++|++||.|.+|++..++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456889999999999999999999999999999998864 3689999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 019811 130 YASGQRE 136 (335)
Q Consensus 130 ~~~~~~~ 136 (335)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8766543
No 71
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=123.44 Aligned_cols=85 Identities=27% Similarity=0.431 Sum_probs=76.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567889999999999999999999999999999998763 46899999999999999999999999999999999
Q ss_pred eeccCCCcc
Q 019811 128 WAYASGQRE 136 (335)
Q Consensus 128 ~~~~~~~~~ 136 (335)
++.+.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765543
No 72
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1.1e-18 Score=125.88 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccC-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
+...++|||+|||+++++++|+++|+.|| .|..+++..+.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34567899999999999999999999999 89999987667789999999999999999999999999999999999865
Q ss_pred CC
Q 019811 132 SG 133 (335)
Q Consensus 132 ~~ 133 (335)
..
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 43
No 73
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=4.5e-18 Score=124.71 Aligned_cols=86 Identities=26% Similarity=0.534 Sum_probs=77.7
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
.....+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456788999999999999999999999999999999998753 58999999999999999999999999999999
Q ss_pred EeeeccCCCc
Q 019811 126 VNWAYASGQR 135 (335)
Q Consensus 126 v~~~~~~~~~ 135 (335)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876544
No 74
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=125.07 Aligned_cols=79 Identities=15% Similarity=0.263 Sum_probs=72.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.+.++|||+|||.++++++|+++|++||.|.+|+++.++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567899999999999999999999999999999998754 589999999999999999999999999999999998
Q ss_pred ccC
Q 019811 130 YAS 132 (335)
Q Consensus 130 ~~~ 132 (335)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 75
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=120.73 Aligned_cols=79 Identities=28% Similarity=0.443 Sum_probs=72.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567889999999999999999999999999999998864 36899999999999999999999999999999999
Q ss_pred eec
Q 019811 128 WAY 130 (335)
Q Consensus 128 ~~~ 130 (335)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 76
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=125.53 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=74.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC--CccccCceeEEeee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIKVNWA 129 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~~ 129 (335)
...++++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 3456789999999999999999999999999999999886 5899999999999999999887 46899999999999
Q ss_pred ccCCCcc
Q 019811 130 YASGQRE 136 (335)
Q Consensus 130 ~~~~~~~ 136 (335)
..+....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 7765443
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=3.7e-18 Score=117.46 Aligned_cols=80 Identities=51% Similarity=0.890 Sum_probs=77.1
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|+..|++..++|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999765
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=122.49 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=78.1
Q ss_pred CCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCcee
Q 019811 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (335)
Q Consensus 49 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (335)
+.....+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 344566789999999999999999999999999999999988753 5799999999999999999999999999999
Q ss_pred EEeeeccCCCc
Q 019811 125 KVNWAYASGQR 135 (335)
Q Consensus 125 ~v~~~~~~~~~ 135 (335)
+|.++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 79
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-18 Score=121.64 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC--CccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~ 128 (335)
...++++|||+|||.+ +++++|+++|++||.|.+|++.+ .+|||||+|.+.++|..|++.|+ +..+.|++|+|.+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3556889999999998 99999999999999999999975 46899999999999999999875 4669999999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+..+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 976543
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.1e-18 Score=122.38 Aligned_cols=84 Identities=25% Similarity=0.492 Sum_probs=75.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-----CCCeEEEEEcCHHHHHHHHHHh-CCccccCceeE
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIK 125 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~ 125 (335)
.....++|||+|||..+++++|+++|+.||.|.+|++..+. .+|||||+|.+.++|.+|+..| |+..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34567889999999999999999999999999999998772 3689999999999999999999 99999999999
Q ss_pred EeeeccCCCc
Q 019811 126 VNWAYASGQR 135 (335)
Q Consensus 126 v~~~~~~~~~ 135 (335)
|.++.+....
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999876543
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=3.5e-18 Score=125.93 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=72.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
....+.++|||+|||.++++++|+++|++||.|.+|++..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345667899999999999999999999999999999998764 3689999999999999999999999999999999
Q ss_pred eee
Q 019811 127 NWA 129 (335)
Q Consensus 127 ~~~ 129 (335)
.++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=122.59 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=76.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.++|||+|||.++++++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999998764 36899999999999999999999999999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99866543
No 83
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=120.20 Aligned_cols=79 Identities=25% Similarity=0.596 Sum_probs=71.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.+.++|||+|||.++++++|+++|+.||.|.++++..++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456789999999999999999999999999999998875 3589999999999999999999999999999999998
Q ss_pred ccC
Q 019811 130 YAS 132 (335)
Q Consensus 130 ~~~ 132 (335)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 84
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=119.40 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=73.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
..++|||+|||.++++++|+++|+.||.|.++.+..+. .+|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999998865 5789999999999999999999999999999999998
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 85
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.9e-18 Score=118.27 Aligned_cols=79 Identities=29% Similarity=0.498 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
+.+.++|||+|||.++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.||+..+.|+.|+|.++.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 4567899999999999999999999999999999987 579999999999999999999999999999999999876
Q ss_pred CCc
Q 019811 133 GQR 135 (335)
Q Consensus 133 ~~~ 135 (335)
...
T Consensus 81 ~~~ 83 (90)
T 2dnq_A 81 SKA 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=6.7e-18 Score=121.68 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=75.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccC---ceeEE
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFG---QPIKV 126 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g---~~l~v 126 (335)
....++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34578899999999999999999999999999999998753 5899999999999999999999999998 99999
Q ss_pred eeeccCCCc
Q 019811 127 NWAYASGQR 135 (335)
Q Consensus 127 ~~~~~~~~~ 135 (335)
.++.+...+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876654
No 87
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.6e-18 Score=121.23 Aligned_cols=88 Identities=27% Similarity=0.440 Sum_probs=82.1
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.|+..+..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 88
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=118.85 Aligned_cols=83 Identities=55% Similarity=0.976 Sum_probs=76.6
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
.+.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|++..++|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cCC
Q 019811 219 TKG 221 (335)
Q Consensus 219 ~~~ 221 (335)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 89
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.2e-18 Score=121.07 Aligned_cols=81 Identities=16% Similarity=0.332 Sum_probs=74.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4556889999999999999999999999999999999876 2489999999999999999999999999999999999
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 90
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=9.2e-18 Score=123.05 Aligned_cols=90 Identities=53% Similarity=0.928 Sum_probs=83.0
Q ss_pred ccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
.......++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 019811 215 CNWATKGAGN 224 (335)
Q Consensus 215 v~~~~~~~~~ 224 (335)
|.|+..+...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 91
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=7e-18 Score=122.91 Aligned_cols=84 Identities=19% Similarity=0.362 Sum_probs=76.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhC------CccccC
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLN------GRHLFG 121 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~------~~~~~g 121 (335)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45567889999999999999999999999999999998764 46899999999999999999999 999999
Q ss_pred ceeEEeeeccCCCc
Q 019811 122 QPIKVNWAYASGQR 135 (335)
Q Consensus 122 ~~l~v~~~~~~~~~ 135 (335)
+.|+|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876544
No 92
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-18 Score=120.20 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=74.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HHHhccCCceeEEEeecCC-CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~-~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
..+.++|||+|||.++++++|+ ++|++||.|.+|++..++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999 9999999999999987653 6899999999999999999999999999999999
Q ss_pred eeccCC
Q 019811 128 WAYASG 133 (335)
Q Consensus 128 ~~~~~~ 133 (335)
++.+..
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997654
No 93
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=4.5e-18 Score=129.69 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=74.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccC--ceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 130 (335)
++...+|||+||++.+|+++|+++|++||.|.+|++..+..+|||||+|.+.++|.+|++.|||..|.| ++|+|.|+.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 556678999999999999999999999999999999877677899999999999999999999999965 999999998
Q ss_pred cCC
Q 019811 131 ASG 133 (335)
Q Consensus 131 ~~~ 133 (335)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=121.77 Aligned_cols=83 Identities=24% Similarity=0.481 Sum_probs=75.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC-------CCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-------~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
.+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567899999999999999999999999999999987543 589999999999999999999999999999999
Q ss_pred eeeccCCCcc
Q 019811 127 NWAYASGQRE 136 (335)
Q Consensus 127 ~~~~~~~~~~ 136 (335)
.++.+.....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9997765543
No 95
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=119.71 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=75.1
Q ss_pred CCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCcee
Q 019811 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (335)
Q Consensus 49 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (335)
....+.+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 334566788999999999999999999999999999999988653 5899999999999999999999999999999
Q ss_pred EEeeecc
Q 019811 125 KVNWAYA 131 (335)
Q Consensus 125 ~v~~~~~ 131 (335)
+|.++..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999853
No 96
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=6e-19 Score=126.24 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
+...++|||+|||.++++++|+++|+.||.|.++++. +++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456889999999999999999999999999999987 4568999999999999999999999999999999999864
No 97
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=119.62 Aligned_cols=86 Identities=34% Similarity=0.454 Sum_probs=80.5
Q ss_pred ccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
.....+.++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccC
Q 019811 215 CNWATK 220 (335)
Q Consensus 215 v~~~~~ 220 (335)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 98
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=121.24 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccC-----ceeEEe
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-----QPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g-----~~l~v~ 127 (335)
+...++|||+|||.++++++|+++|+.||.|.+|++..+ |||||+|.+.++|.+|++.||+..+.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 345788999999999999999999999999999999887 899999999999999999999999999 999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99876543
No 99
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=120.62 Aligned_cols=83 Identities=28% Similarity=0.570 Sum_probs=75.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeE-EEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v-~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.++++|||+|||.++++++|+++|+.||.|.++ ++..++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456889999999999999999999999999999 998763 368999999999999999999999999999999999
Q ss_pred eccCCCcc
Q 019811 129 AYASGQRE 136 (335)
Q Consensus 129 ~~~~~~~~ 136 (335)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98766443
No 100
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-18 Score=120.11 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=80.7
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+.++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019811 218 ATKGAG 223 (335)
Q Consensus 218 ~~~~~~ 223 (335)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=4.7e-18 Score=117.52 Aligned_cols=78 Identities=28% Similarity=0.473 Sum_probs=71.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+.+.++|||+|||.++++++|+++|++||.|.++++..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998763 368999999999999999999999999999999998
Q ss_pred ec
Q 019811 129 AY 130 (335)
Q Consensus 129 ~~ 130 (335)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=120.39 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=73.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
...+.++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 4556789999999999999999999999999999998765 58999999999999999999999999999999999976
Q ss_pred CC
Q 019811 132 SG 133 (335)
Q Consensus 132 ~~ 133 (335)
+.
T Consensus 89 ~~ 90 (99)
T 2cpj_A 89 SA 90 (99)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 103
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=118.69 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=72.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCcccc--CceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~ 130 (335)
+.++++|||+|||.++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.||+..+. |+.|+|.++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 445688999999999999999999999999999999776 679999999999999999999999999 9999999997
Q ss_pred cCC
Q 019811 131 ASG 133 (335)
Q Consensus 131 ~~~ 133 (335)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 104
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=7.3e-18 Score=121.69 Aligned_cols=84 Identities=20% Similarity=0.369 Sum_probs=75.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccc---cCcee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHL---FGQPI 124 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~---~g~~l 124 (335)
.+.+.++|||+|||.++++++|+++|++||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45567889999999999999999999999999999998864 468999999999999999999999887 89999
Q ss_pred EEeeeccCCCc
Q 019811 125 KVNWAYASGQR 135 (335)
Q Consensus 125 ~v~~~~~~~~~ 135 (335)
+|.++.+....
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999776543
No 105
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=122.91 Aligned_cols=81 Identities=27% Similarity=0.560 Sum_probs=74.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..++++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45568899999999999999999999999999999988754 58999999999999999999999999999999999
Q ss_pred eccCC
Q 019811 129 AYASG 133 (335)
Q Consensus 129 ~~~~~ 133 (335)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87654
No 106
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=3.7e-18 Score=133.35 Aligned_cols=125 Identities=16% Similarity=0.286 Sum_probs=80.1
Q ss_pred EEEcCHHHHHHHHHHhCCcccc--CceeEEeeecc-----------------CCCccCCCCcceEEECCCCccccHHHHH
Q 019811 99 IHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAYA-----------------SGQREDTSGHFNIFVGDLSPEVTDATLF 159 (335)
Q Consensus 99 v~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~-----------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 159 (335)
.+|.+.++|..|+..+++.... |+.....+... .........+++|||+|||..+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999888887665 55555544211 0112223446789999999999999999
Q ss_pred HHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCCC
Q 019811 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (335)
Q Consensus 160 ~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 223 (335)
++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999988999999999999999999999999999999999999999977554
No 107
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.6e-18 Score=118.54 Aligned_cols=85 Identities=31% Similarity=0.539 Sum_probs=80.0
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
.++++|||+|||.++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019811 219 TKGAG 223 (335)
Q Consensus 219 ~~~~~ 223 (335)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 108
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=119.62 Aligned_cols=86 Identities=31% Similarity=0.654 Sum_probs=80.3
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceee-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
.++++|||+|||.++++++|+++|+.||.|..+ .+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 9999988899999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019811 218 ATKGAGN 224 (335)
Q Consensus 218 ~~~~~~~ 224 (335)
+..+...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 109
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=4.5e-18 Score=117.60 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=77.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+.++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cc
Q 019811 218 AT 219 (335)
Q Consensus 218 ~~ 219 (335)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 110
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=122.77 Aligned_cols=87 Identities=25% Similarity=0.403 Sum_probs=76.8
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
.....+.++|||+|||.++++++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|++.+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3446677899999999999999999999999999999998864 468999999999999999999998 89999999
Q ss_pred EeeeccCCCccC
Q 019811 126 VNWAYASGQRED 137 (335)
Q Consensus 126 v~~~~~~~~~~~ 137 (335)
|.++........
T Consensus 90 V~~a~~~~~~~~ 101 (116)
T 2cqd_A 90 VNLAYLGAKPRS 101 (116)
T ss_dssp EEESTTTCCCCC
T ss_pred EEEcccCCCccc
Confidence 999976554433
No 111
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=5.9e-18 Score=119.80 Aligned_cols=82 Identities=27% Similarity=0.603 Sum_probs=78.3
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
+++|||+|||..+++++|+++|+.||.|..+.+.+++.+|.++|||||+|.+.++|.+|++.|++..++|+.|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47899999999999999999999999999999999988899999999999999999999999999999999999999977
Q ss_pred CC
Q 019811 221 GA 222 (335)
Q Consensus 221 ~~ 222 (335)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 112
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=5.5e-18 Score=119.97 Aligned_cols=80 Identities=31% Similarity=0.458 Sum_probs=73.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
++++|||+|||.++++++|+++|+.||.|.++++..++ ++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999998774 36899999999999999999999999999999999997
Q ss_pred cCCC
Q 019811 131 ASGQ 134 (335)
Q Consensus 131 ~~~~ 134 (335)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 6653
No 113
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=7.8e-18 Score=119.16 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=70.3
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
..++++|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 44578899999998 99999999999999999999883 68999999999999999999999999999999999865
Q ss_pred C
Q 019811 132 S 132 (335)
Q Consensus 132 ~ 132 (335)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=118.65 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=79.3
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+.+++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998754
No 115
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=119.81 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCcee--------EEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCcccc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLF 120 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~ 120 (335)
+...++|||+|||.++++++|+++|++||.|.+ +++..++. +|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 455688999999999999999999999999999 99988753 589999999999999999999999999
Q ss_pred CceeEEeee
Q 019811 121 GQPIKVNWA 129 (335)
Q Consensus 121 g~~l~v~~~ 129 (335)
|+.|+|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999987
No 116
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=5.5e-18 Score=116.59 Aligned_cols=77 Identities=23% Similarity=0.513 Sum_probs=71.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
+.+|||+|||.++++++|+++|+.||.|.++++..++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35799999999999999999999999999999987743 58999999999999999999999999999999999976
Q ss_pred C
Q 019811 132 S 132 (335)
Q Consensus 132 ~ 132 (335)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=118.55 Aligned_cols=85 Identities=22% Similarity=0.448 Sum_probs=79.6
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4556899999999999999999999999999999999998889999999999999999999998 999999999999999
Q ss_pred ccCCCC
Q 019811 218 ATKGAG 223 (335)
Q Consensus 218 ~~~~~~ 223 (335)
+..+..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987654
No 118
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=120.48 Aligned_cols=82 Identities=26% Similarity=0.383 Sum_probs=74.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
...+.++|||+|||.++++++|+++|+.|| |.+|++..++ .+|||||+|.+.++|.+|+ .|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345668999999999999999999999999 9999998764 3689999999999999999 99999999999999
Q ss_pred eeeccCCCc
Q 019811 127 NWAYASGQR 135 (335)
Q Consensus 127 ~~~~~~~~~ 135 (335)
.++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876544
No 119
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-17 Score=125.73 Aligned_cols=84 Identities=33% Similarity=0.564 Sum_probs=76.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+...++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999998754 5899999999999999999999999999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.+...+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.2e-18 Score=121.74 Aligned_cols=83 Identities=28% Similarity=0.519 Sum_probs=75.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
.+...++|||+|||.++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 3456789999999999999999999999999999999877 68999999999999999999999999999999999987
Q ss_pred CCCcc
Q 019811 132 SGQRE 136 (335)
Q Consensus 132 ~~~~~ 136 (335)
.....
T Consensus 99 ~~~~~ 103 (109)
T 1x4g_A 99 SPDMT 103 (109)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 66443
No 121
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=121.18 Aligned_cols=81 Identities=32% Similarity=0.571 Sum_probs=74.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+..+++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568899999999999999999999999999999988753 58999999999999999999999999999999999
Q ss_pred eccCC
Q 019811 129 AYASG 133 (335)
Q Consensus 129 ~~~~~ 133 (335)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 87653
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.5e-18 Score=116.45 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=70.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHh-CCccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~ 130 (335)
+...++|||+|||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|+..| +|..+.|++|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456688999999999999999999999999999999875 579999999999999999988 9999999999999873
No 123
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=119.93 Aligned_cols=87 Identities=32% Similarity=0.463 Sum_probs=81.1
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45668999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019811 218 ATKGAGN 224 (335)
Q Consensus 218 ~~~~~~~ 224 (335)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 124
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.3e-17 Score=122.27 Aligned_cols=87 Identities=28% Similarity=0.466 Sum_probs=81.0
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
|+..+..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 125
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=119.96 Aligned_cols=80 Identities=33% Similarity=0.616 Sum_probs=73.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.+...++|||+|||..+++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 355678999999999999999999999999999999988753 58999999999999999999999999999999998
Q ss_pred ecc
Q 019811 129 AYA 131 (335)
Q Consensus 129 ~~~ 131 (335)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 126
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=118.83 Aligned_cols=84 Identities=27% Similarity=0.361 Sum_probs=78.7
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCcee--------eEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (335)
......++|||+|||.++++++|+++|+.||.|.. +.+++++.+|.++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 9999998889999999999999999999999999999
Q ss_pred eCCeeeEEEEcc
Q 019811 208 LGSRQIRCNWAT 219 (335)
Q Consensus 208 ~~g~~l~v~~~~ 219 (335)
+.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=5.6e-18 Score=122.32 Aligned_cols=78 Identities=24% Similarity=0.487 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
....++|||+|||.++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4566889999999999999999999999999999997 689999999999999999999999999999999999765
Q ss_pred CC
Q 019811 133 GQ 134 (335)
Q Consensus 133 ~~ 134 (335)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 128
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=122.25 Aligned_cols=81 Identities=26% Similarity=0.508 Sum_probs=74.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
....++|||+|||.++++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567889999999999999999999999999999998865 4689999999999999999999999999999999999
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
.+..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 129
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=120.15 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=81.9
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||.++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 130
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=120.99 Aligned_cols=86 Identities=28% Similarity=0.567 Sum_probs=80.6
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
....+.++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..++|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCC
Q 019811 216 NWATKG 221 (335)
Q Consensus 216 ~~~~~~ 221 (335)
.++..+
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998765
No 131
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=117.84 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=78.0
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||..+++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Ecc
Q 019811 217 WAT 219 (335)
Q Consensus 217 ~~~ 219 (335)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 132
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=119.62 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCC--ceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCc----cccCc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP--VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGR----HLFGQ 122 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~--v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~----~~~g~ 122 (335)
...-.||||+|||+++|+++|+++|++||. +.+|++.+++ ++|||||+|.+.++|.+|++.|||. .+.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344578999999999999999999999995 6789988864 4689999999999999999999996 48899
Q ss_pred eeEEeeecc
Q 019811 123 PIKVNWAYA 131 (335)
Q Consensus 123 ~l~v~~~~~ 131 (335)
+|.|.|+.+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 133
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.6e-17 Score=119.15 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=74.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+.+.++|||+|||.++++++|+++|+.|| |.+|++..++. +|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 355678999999999999999999999997 99999998763 589999999999999999 899999999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 134
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=9e-18 Score=117.93 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..+.++|||+|||.++++++|+++|+.||.|.++++..+. .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3456889999999999999999999999999999998753 35899999999999999999999999999999999997
Q ss_pred cCCC
Q 019811 131 ASGQ 134 (335)
Q Consensus 131 ~~~~ 134 (335)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 135
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=120.67 Aligned_cols=86 Identities=22% Similarity=0.438 Sum_probs=80.3
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
....+++|||+|||..+++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
|+..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987653
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=4e-18 Score=125.00 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=92.4
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
+..+++|||+|||..+++++|+++|+.||.|..+.++++ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999865 45689999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcccccchhccCCCCcCCcCCCCCCCCCCCCCCCeEEEcCCCcccCHHHHHHHhhhcC
Q 019811 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 287 (335)
+...... .+++...++++|.++|++||
T Consensus 82 a~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 82 YNANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp CCHHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHC
T ss_pred ecCChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhC
Confidence 8653210 46778889999999999999
No 137
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=115.86 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=72.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
+...++|||+|||.++++++|+++|+.||.|.++++.+ +||||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 55678999999999999999999999999999999874 49999999999999999999999999999999999776
Q ss_pred CCc
Q 019811 133 GQR 135 (335)
Q Consensus 133 ~~~ 135 (335)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 138
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.9e-18 Score=120.71 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=72.6
Q ss_pred ceEEECCCCccccHHHHHHHhccCC--CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
.+|||+|||.++++++|+++|+.|| .|.++.+++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 019811 220 KGA 222 (335)
Q Consensus 220 ~~~ 222 (335)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=123.65 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHHhccCCceeEEEeec-CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~~~~~-~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.++++|||+|||..+++++|+ ++|++||.|.+|.+..+ +++|||||+|.+.++|..|+..|||..+.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346789999999999999876 79999999999988664 4679999999999999999999999999999999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+..+..
T Consensus 107 a~~~~~ 112 (127)
T 2a3j_A 107 SETPQS 112 (127)
T ss_dssp CCCCCH
T ss_pred ccCcch
Confidence 976553
No 140
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.2e-18 Score=120.48 Aligned_cols=87 Identities=29% Similarity=0.453 Sum_probs=81.1
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987553
No 141
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=2.8e-17 Score=118.41 Aligned_cols=86 Identities=22% Similarity=0.398 Sum_probs=79.3
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---eeeE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS---RQIR 214 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~l~ 214 (335)
....++|||+|||.++++++|+++|+.||.|..+.+.+++ ++.++|||||+|.+.++|.+|+..|++..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4557899999999999999999999999999999999986 78999999999999999999999999999988 9999
Q ss_pred EEEccCCCCC
Q 019811 215 CNWATKGAGN 224 (335)
Q Consensus 215 v~~~~~~~~~ 224 (335)
|.|+......
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 142
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=115.61 Aligned_cols=78 Identities=27% Similarity=0.528 Sum_probs=71.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
+.+.++|||+|||.++++++|+++|+.||.|.++++.+ +||||+|.+.++|.+|+..|||..+.|+.|+|.++.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 45678899999999999999999999999999999874 49999999999999999999999999999999999776
Q ss_pred CC
Q 019811 133 GQ 134 (335)
Q Consensus 133 ~~ 134 (335)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 143
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=120.98 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=75.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCce--------eEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--------GCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHL 119 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~ 119 (335)
.....++|||+|||.++++++|+++|+.||.|. .|++..++ .+|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 355678999999999999999999999999998 69998874 368999999999999999999999999
Q ss_pred cCceeEEeeeccCCCc
Q 019811 120 FGQPIKVNWAYASGQR 135 (335)
Q Consensus 120 ~g~~l~v~~~~~~~~~ 135 (335)
.|+.|+|.++..+...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876544
No 144
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=2.5e-17 Score=118.16 Aligned_cols=79 Identities=32% Similarity=0.565 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
..+.++|||+|||.++|+++|+++|+.||.|.+|++. ++||||+|.+.++|.+|++.||+..+.|+.|+|.++.+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 3456889999999999999999999999999999986 459999999999999999999999999999999999766
Q ss_pred CCc
Q 019811 133 GQR 135 (335)
Q Consensus 133 ~~~ 135 (335)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 145
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=7.8e-17 Score=119.67 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=77.1
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
+.....+++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 29 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3356778899999999999999999999999999999998865 4689999999999999999999999999999999
Q ss_pred eeeccCCC
Q 019811 127 NWAYASGQ 134 (335)
Q Consensus 127 ~~~~~~~~ 134 (335)
.++.....
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99976543
No 146
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=120.24 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=81.6
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeC
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT------GKWLG 209 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~ 209 (335)
......++|||+|||.++++++|+++|..||.|..+.+++++.++.++|||||+|.+.++|.+|+..++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999998889999999999999999999999999 99999
Q ss_pred CeeeEEEEccCCCC
Q 019811 210 SRQIRCNWATKGAG 223 (335)
Q Consensus 210 g~~l~v~~~~~~~~ 223 (335)
|+.|+|.|+..+..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987654
No 147
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=120.76 Aligned_cols=85 Identities=32% Similarity=0.485 Sum_probs=79.1
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999987 889999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019811 218 ATKGAG 223 (335)
Q Consensus 218 ~~~~~~ 223 (335)
+..+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987553
No 148
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=117.87 Aligned_cols=87 Identities=26% Similarity=0.527 Sum_probs=80.0
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||.++++++|+++|+.||.|..+.+.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999999999988 7889999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 019811 216 NWATKGAGN 224 (335)
Q Consensus 216 ~~~~~~~~~ 224 (335)
.|+..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999876543
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=117.86 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeE-EEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v-~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
....++|||+|||.++++++|+++|+.||.|.++ .+..++.++.|||+|.+.++|.+|+..|||..+.|++|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3456889999999999999999999999999999 588888777899999999999999999999999999999999976
Q ss_pred C
Q 019811 132 S 132 (335)
Q Consensus 132 ~ 132 (335)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 150
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=3.7e-18 Score=121.64 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred CcceEEECCCCc------cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-ee
Q 019811 140 GHFNIFVGDLSP------EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS-RQ 212 (335)
Q Consensus 140 ~~~~l~v~nlp~------~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~ 212 (335)
.+++|||+|||. ++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+..|++..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999889999999999999999999999999999999 99
Q ss_pred eEEEEccC
Q 019811 213 IRCNWATK 220 (335)
Q Consensus 213 l~v~~~~~ 220 (335)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999865
No 151
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=120.08 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=74.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.....++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 345578899999999999999999999999999999988754 57999999999999999999999999999999999
Q ss_pred eccCC
Q 019811 129 AYASG 133 (335)
Q Consensus 129 ~~~~~ 133 (335)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 86543
No 152
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=119.38 Aligned_cols=86 Identities=41% Similarity=0.596 Sum_probs=80.6
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45668999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019811 218 ATKGAG 223 (335)
Q Consensus 218 ~~~~~~ 223 (335)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 153
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=119.06 Aligned_cols=88 Identities=27% Similarity=0.430 Sum_probs=81.2
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeee
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD-QKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQI 213 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l 213 (335)
......++|||+|||..+++++|+++|+.||.|..+.++++ +.++.++|||||+|.+.++|.+|+..| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456689999999999999999999999999999999988 678899999999999999999999999 9999999999
Q ss_pred EEEEccCCCC
Q 019811 214 RCNWATKGAG 223 (335)
Q Consensus 214 ~v~~~~~~~~ 223 (335)
.|.|+.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 154
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=1.4e-17 Score=121.02 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=74.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4566889999999999999999999999999999998764 368999999999999999999999999999999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 976553
No 155
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=122.06 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=69.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC-----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
....++|||+|||.++++++|+++|+.|| |.+|++..++ ++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 9999998765 3699999999999999999 899999999999999
Q ss_pred eeccC
Q 019811 128 WAYAS 132 (335)
Q Consensus 128 ~~~~~ 132 (335)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98754
No 156
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-17 Score=119.84 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=74.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCc----eeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..++++|||+|||.++|+++|+++|+.||.| ..+.+...+++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999998 566666667789999999999999999999999999999999999
Q ss_pred eccCCCcc
Q 019811 129 AYASGQRE 136 (335)
Q Consensus 129 ~~~~~~~~ 136 (335)
+.+.....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98765443
No 157
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=118.30 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcC--CCcccccCccccC
Q 019811 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKV 335 (335)
Q Consensus 260 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~~~~g~~l~v 335 (335)
.+.++|||+|||+++++++|+++|++|| .|.++++.+++|+|||+|.+.++|.+|+..|++ . .|+|++|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG--~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~---~l~Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHC--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCC---EETTEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCc---eECCEEEEE
Confidence 3458999999999999999999999999 699999999999999999999999999998864 6 899999986
No 158
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.2e-18 Score=122.81 Aligned_cols=81 Identities=23% Similarity=0.481 Sum_probs=73.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.....++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 34567899999999999999999999999999999998765 3689999999999999999 999999999999999
Q ss_pred eeccCC
Q 019811 128 WAYASG 133 (335)
Q Consensus 128 ~~~~~~ 133 (335)
++.++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 986543
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=125.23 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCcee--EEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCc----cccCc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGR----HLFGQ 122 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~----~~~g~ 122 (335)
....++|||+|||+++|+++|+++|++||.|.. |+++.++ ++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356688999999999999999999999999976 9998876 469999999999 999999999999 99999
Q ss_pred eeEEeeeccCCC
Q 019811 123 PIKVNWAYASGQ 134 (335)
Q Consensus 123 ~l~v~~~~~~~~ 134 (335)
.|+|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999977644
No 160
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=117.90 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=78.1
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
.+.++|||+|||.++++++|+++|+.||.|..+.+.+++. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3557999999999999999999999999999999998865 5588999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99977543
No 161
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=119.28 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec---CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.+.+.++|||+|||.++++++|+++|+.||.| ++..+ +.+|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 45667899999999999999999999999987 33333 4579999999999999999999999999999999999
Q ss_pred eccCCCc
Q 019811 129 AYASGQR 135 (335)
Q Consensus 129 ~~~~~~~ 135 (335)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 162
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=117.87 Aligned_cols=85 Identities=21% Similarity=0.421 Sum_probs=79.6
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCce-eeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCee----
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ---- 212 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~---- 212 (335)
....++|||+|||.++++++|+++|+.||.|. .+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred eEEEEccCCC
Q 019811 213 IRCNWATKGA 222 (335)
Q Consensus 213 l~v~~~~~~~ 222 (335)
|+|.|+....
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987653
No 163
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.1e-17 Score=124.73 Aligned_cols=87 Identities=32% Similarity=0.453 Sum_probs=81.3
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
....+.++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 019811 216 NWATKGA 222 (335)
Q Consensus 216 ~~~~~~~ 222 (335)
.|+..+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997754
No 164
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.2e-17 Score=122.99 Aligned_cols=84 Identities=31% Similarity=0.498 Sum_probs=78.2
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..++|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456689999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcc
Q 019811 216 NWAT 219 (335)
Q Consensus 216 ~~~~ 219 (335)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 165
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=2e-17 Score=120.20 Aligned_cols=86 Identities=20% Similarity=0.400 Sum_probs=80.3
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
....+++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..++|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
|+..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987654
No 166
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=3.1e-18 Score=119.67 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=66.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccC--CceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
.+|||+|||.++|+++|+++|+.|| .|.++++..++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999998875 35899999999999999999999999999999999987
Q ss_pred cCCC
Q 019811 131 ASGQ 134 (335)
Q Consensus 131 ~~~~ 134 (335)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 167
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-17 Score=115.19 Aligned_cols=78 Identities=33% Similarity=0.571 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcc--CCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST--GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~--G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..+.++|||+|||.++++++|+++|+.| |.|.++++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4567899999999999999999999999 889988764 5799999999999999999999999999999999998
Q ss_pred cCCC
Q 019811 131 ASGQ 134 (335)
Q Consensus 131 ~~~~ 134 (335)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 168
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=6e-17 Score=116.17 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=78.7
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
...+.++|||+|||.++++++|+++|+.|| |..+.+++++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345568999999999999999999999996 999999999888999999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987553
No 169
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=117.15 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=67.7
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 257 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
...+++++|||+|||+++++++|+++|++|| .|.++.+.++||+|||+|.+.++|.+|++.|+|.+. .++|++|.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG--~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~-~i~Gr~i~V 91 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFG--PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQI-YIAGHPAFV 91 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCE-EETTEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCc-eeCCcEEEE
Confidence 3445679999999999999999999999999 599999999999999999999999999999998822 388999875
No 170
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=128.27 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccC--CceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...++|||+|||.++|+++|+++|+.|| .|.+|+++.++. +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568899999999999999999999999 899999988753 5899999999999999999999999999999999
Q ss_pred eecc
Q 019811 128 WAYA 131 (335)
Q Consensus 128 ~~~~ 131 (335)
++.+
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9854
No 171
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=118.80 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
....++|||+|||.++|+++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456889999999999999999999999999999998864 57999999999999999998 8999999999999987
Q ss_pred cc
Q 019811 130 YA 131 (335)
Q Consensus 130 ~~ 131 (335)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 172
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-17 Score=118.98 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=80.8
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCce--------eeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
.....++|||+|||.++++++|+++|+.||.|. .+.+++++.++.++|||||+|.+.++|.+|+..|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999999 699999988899999999999999999999999999999
Q ss_pred CCeeeEEEEccCCCC
Q 019811 209 GSRQIRCNWATKGAG 223 (335)
Q Consensus 209 ~g~~l~v~~~~~~~~ 223 (335)
.|+.|+|.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 173
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=117.50 Aligned_cols=81 Identities=26% Similarity=0.518 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCce-eEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCce----
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE-GCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQP---- 123 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~-~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~---- 123 (335)
..++++|||+|||.++++++|+++|++||.|. ++++..++. +|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 999998753 489999999999999999999999999999
Q ss_pred eEEeeeccCC
Q 019811 124 IKVNWAYASG 133 (335)
Q Consensus 124 l~v~~~~~~~ 133 (335)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987554
No 174
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=2.5e-17 Score=118.86 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=81.1
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCee
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSRQ 212 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~ 212 (335)
......++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445668999999999999999999999999999999999988899999999999999999999999999987 8999
Q ss_pred eEEEEccCCCC
Q 019811 213 IRCNWATKGAG 223 (335)
Q Consensus 213 l~v~~~~~~~~ 223 (335)
|.|.++..+..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987553
No 175
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=121.53 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHH---HHHhccCCceeEEEeecCC-------CCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQ---EVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~---~~f~~~G~v~~v~~~~~~~-------~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
.....++|||+|||.++++++|+ ++|++||.|.+|++..++. +|||||+|.+.++|.+|++.|||..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456789999999999999999 9999999999999987642 4799999999999999999999999999
Q ss_pred ceeEEeeeccCC
Q 019811 122 QPIKVNWAYASG 133 (335)
Q Consensus 122 ~~l~v~~~~~~~ 133 (335)
+.|+|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999997665
No 176
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=116.52 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=78.3
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34557899999999999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred ccCC
Q 019811 218 ATKG 221 (335)
Q Consensus 218 ~~~~ 221 (335)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 177
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=114.97 Aligned_cols=83 Identities=19% Similarity=0.360 Sum_probs=76.5
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR-SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
..++|||+|||.++++++|+++|+.||.|..+.+++++.++. ++|+|||+|.+.++|.+|+..|++..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 346899999999999999999999999999999998876555 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 019811 219 TKGA 222 (335)
Q Consensus 219 ~~~~ 222 (335)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 178
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.2e-17 Score=116.80 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
..+.++|||+|||. .+++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 45678899999998 99999999999999999999984 68999999999999999999999999999999999976
Q ss_pred CCCc
Q 019811 132 SGQR 135 (335)
Q Consensus 132 ~~~~ 135 (335)
....
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 5543
No 179
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=123.69 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=81.7
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 019811 217 WATKGAGN 224 (335)
Q Consensus 217 ~~~~~~~~ 224 (335)
++..+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 180
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2.7e-18 Score=127.71 Aligned_cols=82 Identities=18% Similarity=0.356 Sum_probs=77.3
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+ .|++..++|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999888999999999999999999999 799999999999999987
Q ss_pred CCC
Q 019811 220 KGA 222 (335)
Q Consensus 220 ~~~ 222 (335)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 181
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=116.01 Aligned_cols=83 Identities=25% Similarity=0.449 Sum_probs=77.2
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||..+++++|+++|+.||.|..+.+.+++. +.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345568999999999999999999999999999999999865 8899999999999999999999999999999999999
Q ss_pred EccC
Q 019811 217 WATK 220 (335)
Q Consensus 217 ~~~~ 220 (335)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 182
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=9.4e-18 Score=119.51 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=72.8
Q ss_pred CCcceEEEeCCCC------CCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccC-c
Q 019811 54 STCRSVYVGNIHT------QVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFG-Q 122 (335)
Q Consensus 54 ~~~~~v~v~nlp~------~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g-~ 122 (335)
...++|||+|||. ++++++|+++|++||.|.+|++..++. +|||||+|.+.++|.+|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4568899999999 999999999999999999999988763 6999999999999999999999999999 9
Q ss_pred eeEEeeeccC
Q 019811 123 PIKVNWAYAS 132 (335)
Q Consensus 123 ~l~v~~~~~~ 132 (335)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998653
No 183
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=116.98 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
....++|||+|||.++++++|+++|+.||.|.++.++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456789999999999999999999999999887777654 358999999999999999999999999999999999
Q ss_pred eccC
Q 019811 129 AYAS 132 (335)
Q Consensus 129 ~~~~ 132 (335)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8644
No 184
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=124.02 Aligned_cols=81 Identities=28% Similarity=0.473 Sum_probs=73.1
Q ss_pred CCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCcee
Q 019811 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (335)
Q Consensus 49 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (335)
.+....+.++|||+|||.++++++|+++|++||.|.++++..++ .+|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678899999999999999999999999999999998763 46999999999999999999999999999999
Q ss_pred EEeee
Q 019811 125 KVNWA 129 (335)
Q Consensus 125 ~v~~~ 129 (335)
+|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 185
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=115.94 Aligned_cols=80 Identities=31% Similarity=0.521 Sum_probs=70.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCC-ceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCC-ccccCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG-RHLFGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~ 130 (335)
+...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..+.|+.|+|.++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 345678999999999999999999999999 6666653 358999999999999999999999 99999999999998
Q ss_pred cCCCc
Q 019811 131 ASGQR 135 (335)
Q Consensus 131 ~~~~~ 135 (335)
++..+
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 186
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.3e-17 Score=116.25 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=78.5
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
...+.++|||+|||.++++++|+++|+.|| |..+.+++++.+ +.++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345568999999999999999999999999 999999999877 899999999999999999999 89999999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 187
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3e-17 Score=118.64 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
..+.++|||+|||..+++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4567889999999999999999999999999999999875 3589999999999999999999999999999999987
Q ss_pred c
Q 019811 130 Y 130 (335)
Q Consensus 130 ~ 130 (335)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 188
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-16 Score=114.31 Aligned_cols=87 Identities=29% Similarity=0.455 Sum_probs=78.5
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||.++++++|+++|+.||.|..+.+++++. .++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445668999999999999999999999999999999998853 38999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 019811 216 NWATKGAGN 224 (335)
Q Consensus 216 ~~~~~~~~~ 224 (335)
.++..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999876543
No 189
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=5.4e-17 Score=117.33 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=77.5
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
...+.++|||+|||..+++++|+++|+.||.|..+.+++++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred Ecc
Q 019811 217 WAT 219 (335)
Q Consensus 217 ~~~ 219 (335)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 190
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3e-17 Score=113.91 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=69.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+.+.++|||+|||.++++++|+++|++||.|.++++..++. +|||||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 356678999999999999999999999999999999988753 5899999999999999995 58889999999998
Q ss_pred ee
Q 019811 128 WA 129 (335)
Q Consensus 128 ~~ 129 (335)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 191
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=117.71 Aligned_cols=86 Identities=38% Similarity=0.771 Sum_probs=79.7
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhcc-CCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCeeeE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIR 214 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~ 214 (335)
.....++|||+|||.++++++|+++|+. ||.|..+.+++++ ++.++|||||+|.+.++|.+|+..|++.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456689999999999999999999999 9999999999997 88999999999999999999999999999 9999999
Q ss_pred EEEccCCCC
Q 019811 215 CNWATKGAG 223 (335)
Q Consensus 215 v~~~~~~~~ 223 (335)
|.++..+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976553
No 192
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=118.71 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=71.3
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++|||+|||.++++++|+++|+.||.|..+.+.++ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999865 6889999999999999999999999999999999999876
Q ss_pred C
Q 019811 222 A 222 (335)
Q Consensus 222 ~ 222 (335)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 193
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=3.3e-17 Score=118.53 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=70.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|+..+ +..+.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 45567889999999999999999999999999999998864 3689999999999999999876 599999999999
Q ss_pred eeccCCC
Q 019811 128 WAYASGQ 134 (335)
Q Consensus 128 ~~~~~~~ 134 (335)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976543
No 194
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=117.85 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=75.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+.. ++..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456778999999999999999999999999999999998753 48999999999999999988 9999999999999
Q ss_pred eeccCCCcc
Q 019811 128 WAYASGQRE 136 (335)
Q Consensus 128 ~~~~~~~~~ 136 (335)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998765443
No 195
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-16 Score=116.13 Aligned_cols=86 Identities=26% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|..||.|..+.+++++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34556899999999999999999999999999999999986 58899999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9876443
No 196
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.2e-16 Score=114.70 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCe-EEEEEcCHHHHHHHHHHhCCccccC--ceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~-afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (335)
++....|||+|||+.+++++|+++|++||.|.+|++... .|| |||+|.+.++|..|++.|||..|.| ++|+|.++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 455566889999999999999999999999999999763 486 9999999999999999999999987 68999999
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
.++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 197
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=4.9e-17 Score=113.36 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=76.2
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.++|||+|||.++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|+ .+++..+.|+.|+|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999888999999999999999999999 8999999999999999876
Q ss_pred C
Q 019811 221 G 221 (335)
Q Consensus 221 ~ 221 (335)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 198
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=112.81 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=71.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
.+.+.++|||+|| ++++++|+++|++||.|.+|++. +.+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3456789999996 89999999999999999999884 5668999999999999999999999999999999999977
Q ss_pred CCCc
Q 019811 132 SGQR 135 (335)
Q Consensus 132 ~~~~ 135 (335)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 199
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=5.9e-17 Score=112.42 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=75.1
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999996 58889999999998
Q ss_pred Ec
Q 019811 217 WA 218 (335)
Q Consensus 217 ~~ 218 (335)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 200
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=116.02 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=75.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhc-cCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCcc-ccCceeEEe
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSS-TGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRH-LFGQPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~-~~g~~l~v~ 127 (335)
+.+.++|||+|||.++++++|+++|+. ||.|.+|++..++ ++|||||+|.+.++|.+|++.|++.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456688999999999999999999999 9999999998875 35899999999999999999999999 999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99766543
No 201
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9e-17 Score=117.89 Aligned_cols=85 Identities=34% Similarity=0.517 Sum_probs=79.1
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..+++ .+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 445668999999999999999999999999999999999988899999999999999999999999998 8999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997654
No 202
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=1.2e-16 Score=115.91 Aligned_cols=77 Identities=35% Similarity=0.621 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
....++|||+|||.+ +++++|+++|++||.|.+|++ .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 345689999999999 999999999999999999998 568999999999999999999999999999999999975
Q ss_pred CC
Q 019811 132 SG 133 (335)
Q Consensus 132 ~~ 133 (335)
..
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 203
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.7e-17 Score=110.73 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 262 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
+.-|+|+||++.+++++|+++|.+|| .|.++++..++|+|||+|.+.++|.+|++.|||. .++||+|+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G--~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~---~l~gr~I~V 75 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG--PLVSFHPYLNQGIALCKYTTREEANKAQMALNNC---VLANTTIFA 75 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTE---EETTEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC--CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCC---EECCcEEEE
Confidence 46799999999999999999999999 5999999999999999999999999999999999 999999975
No 204
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=118.58 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
...++|||+|||.++++++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|+..|||..+.|+.|+|.|+....
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 3467899999999999999999999999999998864 55799999999999999999999999999999999997543
No 205
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=117.42 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=75.3
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++|+++|.++|+.||.|.++.+++++. +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34557999999999999999999999999999999999976 8999999999999999999998 899999999999998
Q ss_pred ccC
Q 019811 218 ATK 220 (335)
Q Consensus 218 ~~~ 220 (335)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 206
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=5.7e-17 Score=120.82 Aligned_cols=82 Identities=27% Similarity=0.533 Sum_probs=74.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+.++|||+|||.++|+++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4557889999999999999999999999999999998764 368999999999999999999999999999999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+.+...
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 976654
No 207
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=125.37 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=76.6
Q ss_pred CcceEEECCCCccccHHHHHHHhccCC--CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..++|||+|||.++++++|+++|+.|| .|..+.+++|+.+|.++|||||+|.+.++|.+|+..|++..++|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 019811 218 ATK 220 (335)
Q Consensus 218 ~~~ 220 (335)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 208
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.3e-18 Score=116.22 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=71.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+.+.++|||+|||.++++++|+++|+.||.|.++++..++ ++|||||+|.+.++|.+|++.|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3457889999999999999999999999999999998764 368999999999999999999999999999999887
Q ss_pred ec
Q 019811 129 AY 130 (335)
Q Consensus 129 ~~ 130 (335)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 209
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=3.2e-17 Score=115.84 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=75.7
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
...++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34579999999999999999999999999999999998888999999999999999999999999999999999999987
Q ss_pred cC
Q 019811 219 TK 220 (335)
Q Consensus 219 ~~ 220 (335)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 54
No 210
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=114.66 Aligned_cols=85 Identities=25% Similarity=0.548 Sum_probs=77.4
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||..+++++|+++|+.||.|..+.+++++. .++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345668999999999999999999999999999999998853 368999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
|+..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987654
No 211
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=114.11 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=72.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+. ++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 345668899999999999999999999999999999988753 5899999999999999997 4789999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876543
No 212
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=117.52 Aligned_cols=83 Identities=29% Similarity=0.553 Sum_probs=78.5
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|||+|||..+++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34789999999999999999999999999999999998889999999999999999999999999999999999999997
Q ss_pred CCC
Q 019811 220 KGA 222 (335)
Q Consensus 220 ~~~ 222 (335)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 213
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=119.34 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=72.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCc-eeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV-EGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v-~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+.+.++|||+|||.++|+++|+++|+.||.| .+|+++.++ .+|||||+|.+.++|.+|+.. |+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 45667899999999999999999999999999 889998765 468999999999999999976 9999999999999
Q ss_pred eeccC
Q 019811 128 WAYAS 132 (335)
Q Consensus 128 ~~~~~ 132 (335)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 214
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=116.00 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 258 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..+++++|||+|||+++++++|+++|++|| .|..+.+.+++|+|||+|.+.++|.+|+..|++... .++|++|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~i~Gr~l~V 85 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG--TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPV-YIAGQQAFF 85 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCC-BSSSSBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCc-eECCEEEEE
Confidence 345668999999999999999999999999 589999999999999999999999999999876511 599999875
No 215
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=4.6e-17 Score=113.51 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..++|||+|||.++++++|+++|+.||.|.++++..++ ++|||||+|.+.++|.+|+ .+||..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35789999999999999999999999999999998764 3689999999999999999 999999999999999986
Q ss_pred cC
Q 019811 131 AS 132 (335)
Q Consensus 131 ~~ 132 (335)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 216
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-16 Score=111.12 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=76.6
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++++++|+++|+.| .|..+.++++ .+|.++|+|||+|.+.++|.+|+. +++..++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4456799999999999999999999999 9999999999 788999999999999999999999 999999999999999
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97754
No 217
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=2.1e-17 Score=116.74 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=69.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
...++|||+|||.++++++|+++|++||.|.+++++.++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 345889999999999999999999999999888887754 3589999999999999999999999999999999987
Q ss_pred c
Q 019811 130 Y 130 (335)
Q Consensus 130 ~ 130 (335)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 218
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=3e-17 Score=116.47 Aligned_cols=81 Identities=19% Similarity=0.421 Sum_probs=72.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HHHhccCCceeEEEeec-CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~~~~~-~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
..++++|||+|||.++++++|+ ++|++||.|.+|++... +++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456889999999999999999 99999999999988743 346899999999999999999999999999999999
Q ss_pred eeccCC
Q 019811 128 WAYASG 133 (335)
Q Consensus 128 ~~~~~~ 133 (335)
++.+..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997654
No 219
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=8e-18 Score=150.88 Aligned_cols=85 Identities=20% Similarity=0.456 Sum_probs=79.7
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+.++|||+|||..+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34557999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+....
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97654
No 220
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=117.11 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCC------CHHHHHHHHhccCCceeEEEeec--CCCCeEEEEEcCHHHHHHHHHHhCCccccCc-e
Q 019811 53 PSTCRSVYVGNIHTQV------TEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ-P 123 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~-~ 123 (335)
...+++|||+|||..+ ++++|+++|++||.|.+|++.+. +++|||||+|.+.++|.+|+..|||..+.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4456889999999999 78999999999999999998743 3479999999999999999999999999998 9
Q ss_pred eEEeeeccC
Q 019811 124 IKVNWAYAS 132 (335)
Q Consensus 124 l~v~~~~~~ 132 (335)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998644
No 221
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=7e-17 Score=116.83 Aligned_cols=85 Identities=31% Similarity=0.393 Sum_probs=75.6
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3455689999999999999999999999999999999999888999999999999999999999976 589999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
++..+.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 997654
No 222
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=3.4e-17 Score=123.15 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=75.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567889999999999999999999999999999998764 46899999999999999999999999999999999
Q ss_pred eeccCCCc
Q 019811 128 WAYASGQR 135 (335)
Q Consensus 128 ~~~~~~~~ 135 (335)
++.+...+
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99766543
No 223
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.3e-18 Score=115.96 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=75.8
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
.++++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999987765
Q ss_pred c
Q 019811 219 T 219 (335)
Q Consensus 219 ~ 219 (335)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 224
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-17 Score=113.63 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=74.6
Q ss_pred CCcceEEECCCCccccHHHHH----HHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 139 SGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
...++|||+|||.++++++|+ ++|+.||.|.++.+++++.+ +|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 455799999999999999999 99999999999999988654 88999999999999999999999999999999
Q ss_pred EEEccCCC
Q 019811 215 CNWATKGA 222 (335)
Q Consensus 215 v~~~~~~~ 222 (335)
|.++....
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997643
No 225
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=108.07 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=65.7
Q ss_pred cce-EEEeCCCCCCCHHH----HHHHHhccC-CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 56 CRS-VYVGNIHTQVTEPL----LQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 56 ~~~-v~v~nlp~~~t~~~----l~~~f~~~G-~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
+.| |||+|||..+++++ |+++|++|| .|.+| ..|+|||.|.+.++|.+|++.|+|..+.|++|+|.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 445 99999999999988 558999995 99888 2389999999999999999999999999999999999
Q ss_pred ccCCCc
Q 019811 130 YASGQR 135 (335)
Q Consensus 130 ~~~~~~ 135 (335)
..++..
T Consensus 82 ~~~sd~ 87 (96)
T 2diu_A 82 PKNREL 87 (96)
T ss_dssp CCSCCC
T ss_pred CCCcce
Confidence 876643
No 226
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=6.7e-17 Score=120.46 Aligned_cols=88 Identities=22% Similarity=0.418 Sum_probs=81.3
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||..+++++|.++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 019811 217 WATKGAGN 224 (335)
Q Consensus 217 ~~~~~~~~ 224 (335)
|+......
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99776543
No 227
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=1.1e-16 Score=112.37 Aligned_cols=83 Identities=27% Similarity=0.351 Sum_probs=76.8
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+.++|||+|||.++++++|+++|+.||.|..+.+.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999999874 678999999999999999999999999999999999999
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97754
No 228
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=111.68 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
+...++|||+|||.++++++|+++|+.| .|.+|++..+.. +|||||+|.+.++|.+|+. +||..+.|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567889999999999999999999999 899999988732 5899999999999999999 9999999999999998
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7654
No 229
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1.2e-16 Score=117.42 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCe-EEEEEcCHHHHHHHHHHhCCccccC--ceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~-afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (335)
++....|||+||++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.| ++|+|.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 4566778999999999999999999999999999887754 566 9999999999999999999999998 89999999
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7654
No 230
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=116.74 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=80.0
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345668999999999999999999999999999999999988899999999999999999999998 9999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
++..+..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9877653
No 231
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.6e-17 Score=110.83 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=71.6
Q ss_pred eEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
+|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998889999999999999999999998 9999999999999875
No 232
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.3e-17 Score=117.82 Aligned_cols=83 Identities=17% Similarity=0.383 Sum_probs=74.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+...++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+.. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 4456899999999999999999999999999999998864 368999999999999999987 99999999999999
Q ss_pred eccCCCcc
Q 019811 129 AYASGQRE 136 (335)
Q Consensus 129 ~~~~~~~~ 136 (335)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98766543
No 233
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=114.36 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCCcceEEECCCCc-cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeee
Q 019811 137 DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG--KWLGSRQI 213 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l 213 (335)
...++++|||+|||. ++++++|+++|++||.|.++.++++ +|+|||+|.+.++|..|++.|++ ..+.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445678999999999 9999999999999999999999854 47999999999999999998885 45999999
Q ss_pred EEEEccCCC
Q 019811 214 RCNWATKGA 222 (335)
Q Consensus 214 ~v~~~~~~~ 222 (335)
+|.|+....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998654
No 234
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-16 Score=112.59 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=78.6
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344566899999999999999999999999999999999998889999999999999999999998 577999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987654
No 235
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=123.08 Aligned_cols=85 Identities=21% Similarity=0.387 Sum_probs=78.9
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCcee--eEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGS 210 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g 210 (335)
....+++|||+|||+++++++|+++|+.||.|.. +++++|+.+|.++|||||+|.+. +|.+|+..|++. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456689999999999999999999999999977 99999988999999999999999 999999999999 9999
Q ss_pred eeeEEEEccCCC
Q 019811 211 RQIRCNWATKGA 222 (335)
Q Consensus 211 ~~l~v~~~~~~~ 222 (335)
+.|.|.++....
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999997754
No 236
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=117.40 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=74.3
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
.....++|||+|||.++++++|+++|+.|| |.++.+++++ .+|.++|||||+|.+.++|.+|+ .|++..++|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345568999999999999999999999999 9999999987 58899999999999999999999 89999999999999
Q ss_pred EEccCC
Q 019811 216 NWATKG 221 (335)
Q Consensus 216 ~~~~~~ 221 (335)
.++..+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 237
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=116.94 Aligned_cols=80 Identities=38% Similarity=0.642 Sum_probs=73.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
...++|||+|||.++++++|+++|+.||.|.++++..++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3467899999999999999999999999999999988753 589999999999999999999999999999999998
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 238
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-17 Score=115.74 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCcceEEE--eCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccc-----cCceeEE
Q 019811 54 STCRSVYV--GNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL-----FGQPIKV 126 (335)
Q Consensus 54 ~~~~~v~v--~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~-----~g~~l~v 126 (335)
.++++||| +||+.++++++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|++.|||..+ .|++|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34678999 77999999999999999999999998865 368999999999999999999999988 6889999
Q ss_pred eeeccCC
Q 019811 127 NWAYASG 133 (335)
Q Consensus 127 ~~~~~~~ 133 (335)
.++...+
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9886443
No 239
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.8e-16 Score=117.72 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=79.3
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
....+++|||+|||..+++++|+++|+.||.|..+.+.+++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997754
No 240
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=113.83 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=71.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCcee-EEEeec---CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-v~~~~~---~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.....++|||+|||+++|+++|+++|+.||.|.+ |.+..+ +.+|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456788999999999999999999999999987 877765 3469999999999999999987 9999999999999
Q ss_pred eeccCC
Q 019811 128 WAYASG 133 (335)
Q Consensus 128 ~~~~~~ 133 (335)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 241
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-16 Score=114.99 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=72.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccc--------c
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHL--------F 120 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~--------~ 120 (335)
...+.++|||+|||.++++++|+++|+.||.|.++++..++. +|||||+|.+.++|.+|++.|||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 345668899999999999999999999999999999988753 58999999999999999999999999 5
Q ss_pred CceeEEeeeccC
Q 019811 121 GQPIKVNWAYAS 132 (335)
Q Consensus 121 g~~l~v~~~~~~ 132 (335)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778899888643
No 242
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.4e-17 Score=114.50 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=71.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
..+...++|||+|||+++|+++|+++|+.||.+ +|+++.++. +|||||+|.+.++|.+|+ .+|+..+.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 345667899999999999999999999999965 999988753 589999999999999999 579999999999999
Q ss_pred eeccCC
Q 019811 128 WAYASG 133 (335)
Q Consensus 128 ~~~~~~ 133 (335)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 886544
No 243
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=111.07 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=72.5
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCeee
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL--TGKWLGSRQI 213 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~l 213 (335)
....++++|||+|||..+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.+ ++..+.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456689999999999999999999999999999988743 789999999999999999976 5678999999
Q ss_pred EEEEccCCCC
Q 019811 214 RCNWATKGAG 223 (335)
Q Consensus 214 ~v~~~~~~~~ 223 (335)
.|.|+..+..
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9999987554
No 244
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=2e-16 Score=122.42 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=80.7
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||..+++++|.++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019811 218 ATKGAG 223 (335)
Q Consensus 218 ~~~~~~ 223 (335)
+.....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987554
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=115.89 Aligned_cols=81 Identities=23% Similarity=0.348 Sum_probs=72.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCC-ceeEEEe-ec----CCCCeEEEEEcCHHHHHHHHHHhC--CccccCceeE
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLI-RK----DKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIK 125 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~-~~----~~~g~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~ 125 (335)
.+.++|||+|||.++++++|+++|+.||. |.++.+. .+ +++|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45688999999999999999999999998 9999987 44 356899999999999999999996 5899999999
Q ss_pred EeeeccCCC
Q 019811 126 VNWAYASGQ 134 (335)
Q Consensus 126 v~~~~~~~~ 134 (335)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 246
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=112.10 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=65.0
Q ss_pred cceEEEeCCCCCC------CHHHHHHHHhccCCceeEEEeec--CCCCeEEEEEcCHHHHHHHHHHhCCccccCc-eeEE
Q 019811 56 CRSVYVGNIHTQV------TEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ-PIKV 126 (335)
Q Consensus 56 ~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~-~l~v 126 (335)
+++|||+|||..+ ++++|+++|++||.|.++++.+. +++|||||+|.+.++|.+|++.|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 78999999999999999998743 3479999999999999999999999999999 8876
Q ss_pred e
Q 019811 127 N 127 (335)
Q Consensus 127 ~ 127 (335)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 247
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.4e-16 Score=115.58 Aligned_cols=96 Identities=22% Similarity=0.408 Sum_probs=83.4
Q ss_pred cCceeEEeeeccCCCccCCCCcceEEECCCCcc-ccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHH
Q 019811 120 FGQPIKVNWAYASGQREDTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198 (335)
Q Consensus 120 ~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 198 (335)
.|..+.+..+............++|||+|||.. +++++|+++|+.||.|..+.+ ++|||||+|.+.++|.+
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~ 77 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARA 77 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHH
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHH
Confidence 466777777766555555566689999999999 999999999999999999988 46899999999999999
Q ss_pred HHHHhCCceeCCeeeEEEEccCCCC
Q 019811 199 AINDLTGKWLGSRQIRCNWATKGAG 223 (335)
Q Consensus 199 a~~~l~~~~~~g~~l~v~~~~~~~~ 223 (335)
|+..|++..+.|+.|+|.++.....
T Consensus 78 A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 78 AVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHcCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999976443
No 248
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=4.5e-17 Score=109.63 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=65.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
+|||+|||.++++++|+++|++||.|.++++..++ ++|||||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999998765 36899999999999999997 9999999999999875
No 249
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=8.8e-17 Score=118.01 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=71.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCC---ceeEEEeecCC---CCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~---~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
+...++|||+|||+++|+++|+++|+.||. |.+|++..++. +|||||+|.+.++|.+|++ +|+..+.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456788999999999999999999999998 89999987653 5899999999999999998 9999999999999
Q ss_pred eeecc
Q 019811 127 NWAYA 131 (335)
Q Consensus 127 ~~~~~ 131 (335)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98743
No 250
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=115.27 Aligned_cols=84 Identities=30% Similarity=0.476 Sum_probs=76.7
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||.++++++|+++|+.||.|..+.+.+++ +.++|||||+|.+.++|.+|+..|++..++|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344566899999999999999999999999999999999884 348999999999999999999999999999999999
Q ss_pred EEccCC
Q 019811 216 NWATKG 221 (335)
Q Consensus 216 ~~~~~~ 221 (335)
.++..+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998764
No 251
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=7.9e-17 Score=111.91 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=70.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
...++|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 356789999999999999999999999 99999884 667899999999999999999999999999999999986543
No 252
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=110.67 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=72.6
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|+|||+|.+.++|.+|+..++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999998889999999999999999999999988 9999999999986
No 253
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=114.41 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
..+.++|||+|||.++++++|+++|+.||.|..+ .....++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4567899999999999999999999999998777 233345789999999999999999999999999999999999765
Q ss_pred CC
Q 019811 133 GQ 134 (335)
Q Consensus 133 ~~ 134 (335)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 254
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=114.51 Aligned_cols=82 Identities=17% Similarity=0.432 Sum_probs=70.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 51 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
..+.+.++|||+|||.++++++|+++|+.|+ .++++.++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456678899999999999999999999874 55666654 3589999999999999999999999999999999
Q ss_pred eeeccCCCc
Q 019811 127 NWAYASGQR 135 (335)
Q Consensus 127 ~~~~~~~~~ 135 (335)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999876654
No 255
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-16 Score=113.43 Aligned_cols=84 Identities=23% Similarity=0.425 Sum_probs=75.7
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3455689999999999999999999999999999998644 4678999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
|+.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9977543
No 256
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=114.79 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=72.4
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeeeEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG--KWLGSRQIRC 215 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v 215 (335)
..++++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|++.++|.+|++.+++ ..+.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 445689999999999999999999999999999999854 68999999999999999998874 6899999999
Q ss_pred EEccCCCCC
Q 019811 216 NWATKGAGN 224 (335)
Q Consensus 216 ~~~~~~~~~ 224 (335)
.|+..+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999775543
No 257
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.9e-17 Score=110.08 Aligned_cols=72 Identities=22% Similarity=0.446 Sum_probs=67.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
++|||+|||.++++++|+++|++||.|.++.+..++ ++|||||+|.+.++|.+|++.++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999998765 36899999999999999999998 9999999999886
No 258
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=109.57 Aligned_cols=72 Identities=29% Similarity=0.552 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhh-cCCCcccccCccccC
Q 019811 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG-NTTQSSYLFGKQMKV 335 (335)
Q Consensus 259 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~~~~g~~l~v 335 (335)
....++|||+|||.++++++|+++|+.|| .+..+.+.+++|+|||+|.+.++|.+|+..| +|. .++|++|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~---~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFG--EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL---IVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTC---EETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCC--CEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCe---eECCCEEEE
Confidence 34558999999999999999999999999 5999999999999999999999999999998 999 999999975
No 259
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=115.68 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=77.0
Q ss_pred CCCcceEEECCCCccccHHHHH---HHhccCCCceeeEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019811 138 TSGHFNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQKTG---RSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~---~~f~~~g~v~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (335)
....++|||+|||.++++++|+ ++|+.||.|..+.+.++..++ .++|||||+|.+.++|.+|+..|++..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3455799999999999999999 999999999999999886643 5669999999999999999999999999999
Q ss_pred eeEEEEccCCC
Q 019811 212 QIRCNWATKGA 222 (335)
Q Consensus 212 ~l~v~~~~~~~ 222 (335)
.|+|.|+..+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 260
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=2e-17 Score=115.56 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=68.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccC
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (335)
++|||+|||.++++++|+++|+.||.|.++++..++ ++|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999998764 3689999999999 99999999999999999999998765
Q ss_pred CC
Q 019811 133 GQ 134 (335)
Q Consensus 133 ~~ 134 (335)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 261
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=115.03 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=77.8
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCC-ceeeEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeeeE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIR 214 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 214 (335)
.+.++|||+|||.++++++|+++|..||. |..+.++ .++.++.++|||||+|.+.++|.+|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999998 787788999999999999999999999996 5899999999
Q ss_pred EEEccCCCC
Q 019811 215 CNWATKGAG 223 (335)
Q Consensus 215 v~~~~~~~~ 223 (335)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987553
No 262
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=115.45 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCcc-cCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 259 NPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 259 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..++++|||+|||++ +++++|+++|+.|| .|.++.+.+++|+|||+|.+.++|.+|+..|++... .|+||+|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG--KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKAL-WFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCC-CSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCc-eECCEEEEE
Confidence 345689999999998 99999999999999 588999999999999999999999999998865411 699999975
No 263
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=115.40 Aligned_cols=83 Identities=28% Similarity=0.443 Sum_probs=78.0
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|||+|||.++++++|+++|..||.|..+.+++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347999999999999999999999999999999999988899999999999999999999987 9999999999999998
Q ss_pred CCCC
Q 019811 220 KGAG 223 (335)
Q Consensus 220 ~~~~ 223 (335)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 264
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=110.11 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=68.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCC-CeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~-g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
....++|||+|||.++++++|+++|+.||.|.+| +.++.+ .||||+|.+.++|.+|+. |+|..+.|+.|+|.++.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3456789999999999999999999999999987 333322 299999999999999999 999999999999998865
Q ss_pred CCC
Q 019811 132 SGQ 134 (335)
Q Consensus 132 ~~~ 134 (335)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 265
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=118.57 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+. .+|||||+|.+.++|.+|+. +|+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999874444432 35899999999999999998 99999999999999
Q ss_pred eecc
Q 019811 128 WAYA 131 (335)
Q Consensus 128 ~~~~ 131 (335)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8854
No 266
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=4.2e-16 Score=120.59 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=75.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+.++|||+|||.++|+++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999988753 47999999999999999999999999999999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 267
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4e-16 Score=114.08 Aligned_cols=83 Identities=18% Similarity=0.483 Sum_probs=76.7
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL--------G 209 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--------~ 209 (335)
....++|||+|||.++++++|+++|+.||.|..+.+++++ ++.++|||||+|.+.++|.+|+..|++..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999997 889999999999999999999999999998 5
Q ss_pred CeeeEEEEccCC
Q 019811 210 SRQIRCNWATKG 221 (335)
Q Consensus 210 g~~l~v~~~~~~ 221 (335)
++.|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 268
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=2e-17 Score=115.57 Aligned_cols=80 Identities=28% Similarity=0.464 Sum_probs=73.7
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.+ |.+|+..|++..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999888999999999999999 99999999999999999999998775
Q ss_pred C
Q 019811 222 A 222 (335)
Q Consensus 222 ~ 222 (335)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 269
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=114.58 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=69.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEee----cCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~----~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+...++|||+|||.++++++|+++|+.||.|.+ .++. .+++|||||+|.+.++|.+|++ |||..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345688999999999999999999999998877 3333 3457999999999999999998 999999999999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976543
No 270
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=120.10 Aligned_cols=82 Identities=34% Similarity=0.527 Sum_probs=76.8
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred Ec
Q 019811 217 WA 218 (335)
Q Consensus 217 ~~ 218 (335)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 271
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=113.75 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
....++|||+|||+++|+++|+++|+.| .|.+|+|..++ ++|||||+|.+.++|.+|+ .+|+..+.|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3456789999999999999999999999 88899998764 4799999999999999999 69999999999999877
Q ss_pred cc
Q 019811 130 YA 131 (335)
Q Consensus 130 ~~ 131 (335)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 272
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=115.61 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCc-eeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
.....++|||+|||.++++++|+++|+.||.| ..+.+++++ ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34556899999999999999999999999999 899999997 889999999999999999999986 999999999999
Q ss_pred EEccCC
Q 019811 216 NWATKG 221 (335)
Q Consensus 216 ~~~~~~ 221 (335)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 273
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=2.2e-16 Score=123.26 Aligned_cols=83 Identities=27% Similarity=0.523 Sum_probs=74.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..+.++|||+|||..+++++|+++|+.||.|..|.+..++. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567899999999999999999999999999999998753 58999999999999999999999999999999999
Q ss_pred eccCCCc
Q 019811 129 AYASGQR 135 (335)
Q Consensus 129 ~~~~~~~ 135 (335)
+......
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9776543
No 274
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=116.60 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=76.2
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
.++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 478999999999999999999999999999999999888999999999999999999999 8999999999999999865
Q ss_pred C
Q 019811 221 G 221 (335)
Q Consensus 221 ~ 221 (335)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 275
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-16 Score=110.23 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=74.1
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.| .++++ .++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567899999999999999999999999977 45555 578899999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
|+..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 276
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=113.27 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=75.1
Q ss_pred CCCcceEEECCCCccc------cHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019811 138 TSGHFNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (335)
...+++|||+|||..+ ++++|+++|+.||.|..+.++ +.+|.++|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446799999999999 889999999999999999888 35789999999999999999999999999999998
Q ss_pred -eeEEEEccCCC
Q 019811 212 -QIRCNWATKGA 222 (335)
Q Consensus 212 -~l~v~~~~~~~ 222 (335)
.|+|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987543
No 277
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=1.5e-16 Score=119.05 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=71.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCC---ceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
.+...++|||+|||+++|+++|+++|+.||. |.+|++..++ ++|||||+|.+.++|.+|++ +|+..+.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3556788999999999999999999999999 8899998865 35899999999999999998 999999999999
Q ss_pred Eeeec
Q 019811 126 VNWAY 130 (335)
Q Consensus 126 v~~~~ 130 (335)
|.++.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98874
No 278
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=111.27 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=74.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||+++++++|+++|+.||. ..+.+++++ ++.++|||||+|.+.++|.+|+. +++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 445679999999999999999999999995 499999997 89999999999999999999995 799999999999999
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 279
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=2.3e-16 Score=118.04 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCC---ceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
....++|||+|||+++|+++|+++|+.||. |..+.+++++. |.++|||||+|.+.++|.+|+. +++..++|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 445679999999999999999999999999 89999999976 8999999999999999999999 999999999999
Q ss_pred EEEccC
Q 019811 215 CNWATK 220 (335)
Q Consensus 215 v~~~~~ 220 (335)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999754
No 280
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1e-15 Score=109.53 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=76.3
Q ss_pred cCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
......++|||+|||.++++++|+++|+.| ..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345567899999999999999999999977 36778888788899999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.|+..+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987653
No 281
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.3e-16 Score=111.25 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCcee-eEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
....++|||+|||.++++++|+++|..||.|.. +.++++ .++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 888888 7889999999999999999999997 9999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987643
No 282
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=115.41 Aligned_cols=79 Identities=9% Similarity=0.010 Sum_probs=71.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCC---ceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
.....++|||+|||+++|+++|+++|+.||. |.+|++..++ ++|||||+|.+.++|.+|+. +++..+.|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456788999999999999999999999998 8999998764 46899999999999999998 999999999999
Q ss_pred Eeeecc
Q 019811 126 VNWAYA 131 (335)
Q Consensus 126 v~~~~~ 131 (335)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998754
No 283
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=3.8e-16 Score=114.64 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCC---ceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
....++|||+|||+++++++|+++|+.||. |..+.+++++. |.++|||||+|.+.++|.+|+. +++..++|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345678999999999999999999999998 89999999876 8999999999999999999999 999999999999
Q ss_pred EEEccC
Q 019811 215 CNWATK 220 (335)
Q Consensus 215 v~~~~~ 220 (335)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999854
No 284
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=112.27 Aligned_cols=72 Identities=36% Similarity=0.604 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 259 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..+.++|||+|||.++++++|+++|+.|| .|..+.+.+++|+|||+|.+.++|.+|+..|+|. .|+|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM---PLRGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC--CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC---CBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---EeCCceEEE
Confidence 34568999999999999999999999999 5889999999999999999999999999999999 999999875
No 285
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=116.21 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=73.3
Q ss_pred CCCcceEEECCCCccccHHHHH----HHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 019811 138 TSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (335)
..++++|||+|||+.+++++|+ ++|+.||.|.++.+. .++.++|||||+|.+.++|..|+..|+|..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456799999999999999876 699999999998775 357889999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 019811 214 RCNWATKGA 222 (335)
Q Consensus 214 ~v~~~~~~~ 222 (335)
+|.|+..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997654
No 286
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=2.9e-16 Score=114.71 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCce-----eEEee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP-----IKVNW 128 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~-----l~v~~ 128 (335)
...++|||+|||.++++++|+++|+.||.|.+|.+..+ |||||+|.+.++|.+|++.|||..|.|+. ++|..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 34678999999999999999999999999999999877 89999999999999999999999999998 66666
Q ss_pred eccC
Q 019811 129 AYAS 132 (335)
Q Consensus 129 ~~~~ 132 (335)
..+.
T Consensus 91 ~~~~ 94 (115)
T 3beg_B 91 DGPR 94 (115)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5443
No 287
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.3e-16 Score=106.99 Aligned_cols=78 Identities=23% Similarity=0.452 Sum_probs=72.1
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..+.++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4566899999999999999999999999999999887 57999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019811 218 ATKGAG 223 (335)
Q Consensus 218 ~~~~~~ 223 (335)
+..+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 288
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7e-16 Score=109.24 Aligned_cols=71 Identities=23% Similarity=0.400 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCccccc--CccccC
Q 019811 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF--GKQMKV 335 (335)
Q Consensus 260 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~--g~~l~v 335 (335)
.+.++|||+|||.++++++|+++|+.|| .|..+.+..++|+|||+|.+.++|.+|+..|||. .++ |++|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFG--SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF---PLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTS--CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTC---BCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCC---EeCCCCcEEEE
Confidence 4458999999999999999999999999 5999999999999999999999999999999999 899 999875
No 289
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=117.46 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=75.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+|+. +++..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455899999999999999999999999999987677777789999999999999999999999 999999999999999
Q ss_pred ccC
Q 019811 218 ATK 220 (335)
Q Consensus 218 ~~~ 220 (335)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 865
No 290
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=4.5e-16 Score=115.60 Aligned_cols=79 Identities=28% Similarity=0.416 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..++|||+|||.++++++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999998764 3689999999999999999 899999999999999987
Q ss_pred cCCC
Q 019811 131 ASGQ 134 (335)
Q Consensus 131 ~~~~ 134 (335)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 291
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=3.5e-16 Score=108.51 Aligned_cols=73 Identities=25% Similarity=0.521 Sum_probs=67.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcc----C-------CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
..+.++|||+|||.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 3467899999999999999999999999 8 8999988765 689999999999999999 999999999
Q ss_pred ceeEEee
Q 019811 122 QPIKVNW 128 (335)
Q Consensus 122 ~~l~v~~ 128 (335)
+.|+|..
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 292
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=4.4e-16 Score=108.09 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=62.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccc--cCceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~ 130 (335)
+.+..+|||+|||.++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+ +++..+ .|+.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 445678999999999999999999999999999999875 67999999999999973 455544 58999999887
Q ss_pred cCC
Q 019811 131 ASG 133 (335)
Q Consensus 131 ~~~ 133 (335)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 554
No 293
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.9e-16 Score=113.08 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=71.2
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
...++|||+|||+++++++|+++|+.|| .|..+.+..+ .++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999999999 8999887532 5789999999999999999999999999999999999
Q ss_pred ccCC
Q 019811 218 ATKG 221 (335)
Q Consensus 218 ~~~~ 221 (335)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8653
No 294
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=7.1e-16 Score=113.45 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=71.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
.+.+.++|||+|+ ++++++|+++|+.||.|.+|.+. +++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3456789999996 79999999999999999999985 5668999999999999999999999999999999999977
Q ss_pred CCC
Q 019811 132 SGQ 134 (335)
Q Consensus 132 ~~~ 134 (335)
...
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 295
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=7.4e-17 Score=121.03 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=73.9
Q ss_pred CeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCCCccCCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEe
Q 019811 95 SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (335)
Q Consensus 95 g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~ 174 (335)
++||.+|..++.+..++..+... +.|...--.... ..........++|||+|||+++|+++|+++|+.|| +..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~-~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD-SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCC-cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 46788888888777666554332 233222111111 11122334557999999999999999999999999 7799999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCC
Q 019811 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 175 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
+++. +.++|||||+|.+.++|.+|+ .+++..++|+.|.|.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9965 899999999999999999999 789999999999999987654
No 296
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=115.91 Aligned_cols=87 Identities=22% Similarity=0.360 Sum_probs=75.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..++++|||+|||.++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999986554443334788999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019811 218 ATKGAGN 224 (335)
Q Consensus 218 ~~~~~~~ 224 (335)
+..+...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 297
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-15 Score=109.61 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-----ee
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS-----RQ 212 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-----~~ 212 (335)
....++|||+|||.++++++|+++|..||.|..+.++.+ |||||+|.+.++|.+|++.|++..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345689999999999999999999999999999999854 799999999999999999999999999 99
Q ss_pred eEEEEccCCCCC
Q 019811 213 IRCNWATKGAGN 224 (335)
Q Consensus 213 l~v~~~~~~~~~ 224 (335)
|+|.++..+...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 298
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=108.98 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=66.9
Q ss_pred ceEEECCCCccc------cHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-eeE
Q 019811 142 FNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIR 214 (335)
Q Consensus 142 ~~l~v~nlp~~~------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~ 214 (335)
++|||+|||..+ ++++|+++|+.||.|.++.+. +.+|.++|||||+|.+.++|.+|+..|+|..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999887 35788999999999999999999999999999999 887
Q ss_pred E
Q 019811 215 C 215 (335)
Q Consensus 215 v 215 (335)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 299
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.8e-16 Score=110.99 Aligned_cols=70 Identities=30% Similarity=0.510 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 261 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
..++|||+|||.++++++|+++|+.|| .|.++++.+++|+|||+|.+.++|.+|+..|+|. .++|++|+|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V 95 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF---PFQGRNLRT 95 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---EETTEECCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEE
Confidence 358999999999999999999999999 5889999999999999999999999999999999 999999986
No 300
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-15 Score=105.66 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=72.0
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345668999999999999999999999999999998873 399999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
++..+..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9977543
No 301
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=108.41 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=71.9
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||..+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44567999999999999999999999999997 666644 6789999999999999999999999999999999999
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+..+.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97754
No 302
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=8.9e-16 Score=120.76 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=74.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.+..+++|||+|||.++++++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45667899999999999999999999999999999998864 468999999999999999999999999999999999
Q ss_pred eccCC
Q 019811 129 AYASG 133 (335)
Q Consensus 129 ~~~~~ 133 (335)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 86543
No 303
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.7e-16 Score=106.74 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=65.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
+|||+|||.++++++|+++|++||.|.++.+..++ ++|||||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999998754 46899999999999999997 4899999999999864
No 304
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.1e-16 Score=107.62 Aligned_cols=75 Identities=24% Similarity=0.474 Sum_probs=70.9
Q ss_pred eEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
+|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999984 889999999999875
No 305
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=8.7e-17 Score=114.89 Aligned_cols=83 Identities=29% Similarity=0.466 Sum_probs=75.2
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999888 566676778899999999999999999998 999999999999999
Q ss_pred ccCCC
Q 019811 218 ATKGA 222 (335)
Q Consensus 218 ~~~~~ 222 (335)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97654
No 306
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=1.2e-15 Score=110.07 Aligned_cols=78 Identities=21% Similarity=0.446 Sum_probs=71.8
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999887 6799999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
|+....
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 987754
No 307
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=110.64 Aligned_cols=80 Identities=21% Similarity=0.528 Sum_probs=73.4
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||..+++++|+++|+.||.|..+.+.++ +|||||+|.+.++|.+|+..|++..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345679999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019811 218 ATKGAG 223 (335)
Q Consensus 218 ~~~~~~ 223 (335)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987653
No 308
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.7e-16 Score=110.39 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=72.0
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|||+|||+++++++|+++|+.| .|..+.+++++. |.++|+|||+|.+.++|.+|+ .+++..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34789999999999999999999999 899999999865 899999999999999999999 689999999999998875
Q ss_pred C
Q 019811 220 K 220 (335)
Q Consensus 220 ~ 220 (335)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 309
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=108.65 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=66.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeeccCC
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (335)
..+++|||+|||.++++++|+++|+.||.|.+|++..+ ++|||||+|.+.++|++|.. ....+.|+.|.|.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 45688999999999999999999999999999998876 67999999999999976432 1344589999999987665
Q ss_pred Cc
Q 019811 134 QR 135 (335)
Q Consensus 134 ~~ 135 (335)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 310
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=113.02 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=75.1
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCC---ceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
....++|||+|||.++++++|+++|+.||. |..+.+++++. |.++|||||+|.+.++|.+|+. +++..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 455679999999999999999999999887 89999999976 8999999999999999999999 999999999999
Q ss_pred EEEccC
Q 019811 215 CNWATK 220 (335)
Q Consensus 215 v~~~~~ 220 (335)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999865
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=112.51 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=65.6
Q ss_pred CCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 262 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.++|||+|||.++++++|+++|++|| .|..|.+.+++|+|||+|.+.++|.+|+..|||. .|+|++|+|
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V 78 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFG--SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS---KFHHVPLYL 78 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC---BSSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC---EECCeEEEE
Confidence 37899999999999999999999999 5899999999999999999999999999999999 999999875
No 312
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.9e-15 Score=106.81 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=70.4
Q ss_pred CCCCcceEEECCCCc-cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 137 DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
....+++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..++|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345668999999998 99999999999999999999873 689999999999999999999999999999999
Q ss_pred EEccCC
Q 019811 216 NWATKG 221 (335)
Q Consensus 216 ~~~~~~ 221 (335)
.++..+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998764
No 313
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=4.1e-16 Score=110.53 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=74.2
Q ss_pred CCCcceEEECCCCccccHHHHH----HHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 019811 138 TSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (335)
..++++|||+|||.++++++|+ ++|+.||.|..+.+.+ ++.++|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999998873 46778999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 019811 214 RCNWATKGA 222 (335)
Q Consensus 214 ~v~~~~~~~ 222 (335)
+|.|+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999997754
No 314
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=5.2e-16 Score=127.33 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=76.3
Q ss_pred CcceEEECCCCccccHHHHHHHhccCC--CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
..++|||+|||.++++++|+++|+.|| .|..+.|++++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 019811 218 ATK 220 (335)
Q Consensus 218 ~~~ 220 (335)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 315
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=8.6e-16 Score=117.03 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=70.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCcee--------EEEee-cCCCCeEEEEEcCHHHHHHHHHHhCCccccCcee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIR-KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~-~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (335)
.++++|||+|||.++|+++|+++|+.||.|.+ +.+.. .+++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45688999999999999999999999999876 33333 4567999999999999999999999999999999
Q ss_pred EEeeeccCCC
Q 019811 125 KVNWAYASGQ 134 (335)
Q Consensus 125 ~v~~~~~~~~ 134 (335)
+|.++.....
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976544
No 316
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=105.19 Aligned_cols=78 Identities=28% Similarity=0.478 Sum_probs=71.5
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345668999999999999999999999999999998873 389999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997754
No 317
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.7e-16 Score=110.44 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=72.1
Q ss_pred ceEEECCC----CccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 019811 142 FNIFVGDL----SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN----QQD----AQSAIN--DLTGKW 207 (335)
Q Consensus 142 ~~l~v~nl----p~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 207 (335)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+.+|.++|||||+|.+ .++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 322 788888 789999
Q ss_pred eCCeeeEEEEccCC
Q 019811 208 LGSRQIRCNWATKG 221 (335)
Q Consensus 208 ~~g~~l~v~~~~~~ 221 (335)
++|+.|+|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987653
No 318
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=3.4e-15 Score=106.89 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=72.2
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
....++|||+|||.++++++|+++|+.||.|..+.++ ++||||+|.+.++|.+|+..|++..+.|+.|.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456799999999999999999999999999999886 34899999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019811 218 ATKGAGNN 225 (335)
Q Consensus 218 ~~~~~~~~ 225 (335)
+.......
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 98765433
No 319
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=107.93 Aligned_cols=81 Identities=16% Similarity=0.338 Sum_probs=72.6
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999988766 2467889999999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
++..+.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 320
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=3e-16 Score=117.72 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=69.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.+...++|||+|||+++|+++|+++|+.|| |.+|+|+.++ ++|||||+|.+.++|.+|+ .+|+..+.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678899999999999999999999999 6699998764 4689999999999999999 7899999999999998
Q ss_pred eccCC
Q 019811 129 AYASG 133 (335)
Q Consensus 129 ~~~~~ 133 (335)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 86544
No 321
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=3.9e-17 Score=119.83 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=74.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCcee--------EEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCcccc
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~ 120 (335)
..+.++|||+|||.++++++|+++|+.||.|.+ |++..++ .+|||||+|.+.++|.+|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345688999999999999999999999999988 8887763 3689999999999999999999999999
Q ss_pred CceeEEeeeccCCCc
Q 019811 121 GQPIKVNWAYASGQR 135 (335)
Q Consensus 121 g~~l~v~~~~~~~~~ 135 (335)
|+.|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999776543
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=2.2e-15 Score=118.46 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=77.9
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
...+++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999999987 889999999999999999999999999999999999999
Q ss_pred ccCC
Q 019811 218 ATKG 221 (335)
Q Consensus 218 ~~~~ 221 (335)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8763
No 323
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2e-15 Score=106.58 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=70.5
Q ss_pred CCCcceEEECCCCc-cccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 138 TSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 138 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
..++++|||+|||. .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999998 99999999999999999999884 6799999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9977543
No 324
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.7e-15 Score=103.97 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=70.5
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccC--CCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
....++|||+|||.++++++|+++|+.| |.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 888888664 569999999999999999999999999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.|+..+..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987543
No 325
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=105.23 Aligned_cols=79 Identities=25% Similarity=0.408 Sum_probs=69.7
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCC-ceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCeeeEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQIRC 215 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~l~v 215 (335)
....++|||+|||.++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|+..|++ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345679999999999999999999999999 6655552 468999999999999999999999 9999999999
Q ss_pred EEccCCCC
Q 019811 216 NWATKGAG 223 (335)
Q Consensus 216 ~~~~~~~~ 223 (335)
.|+..+..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987543
No 326
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=6.6e-16 Score=110.48 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=75.5
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
...++|||+|||.++++++|+++|+.||.|..+.+++++ ++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345799999999999999999999999999999999997 88999999999999999999998 999999999999998
Q ss_pred cCCC
Q 019811 219 TKGA 222 (335)
Q Consensus 219 ~~~~ 222 (335)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-17 Score=119.54 Aligned_cols=85 Identities=28% Similarity=0.370 Sum_probs=79.0
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCcee--------eEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
.+.++|||+|||.++++++|+++|+.||.|.. +.+++++.++.++|||||+|.+.++|.+|+..|++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 8899888888999999999999999999999999999999
Q ss_pred eeeEEEEccCCCC
Q 019811 211 RQIRCNWATKGAG 223 (335)
Q Consensus 211 ~~l~v~~~~~~~~ 223 (335)
+.|+|.++..+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987643
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=1.3e-15 Score=111.97 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCce--eEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
.+...++|||+|||+++|+++|+++|+.| .|. +|++..++ ++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 44567889999999999999999999999 566 88888764 47999999999999999997 4789999999999
Q ss_pred eeecc
Q 019811 127 NWAYA 131 (335)
Q Consensus 127 ~~~~~ 131 (335)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 329
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-15 Score=106.16 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCCcceEEEeCCCCCCC-----------HHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCcccc
Q 019811 52 DPSTCRSVYVGNIHTQVT-----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t-----------~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~ 120 (335)
.+.++++|+|+||..... +++|+++|++||.|.+|.+.....+|||||+|.+.++|.+|+..|||..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 466789999999944332 689999999999999997744446899999999999999999999999999
Q ss_pred CceeEEeeeccCC
Q 019811 121 GQPIKVNWAYASG 133 (335)
Q Consensus 121 g~~l~v~~~~~~~ 133 (335)
|++|+|.++.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999987654
No 330
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=8e-15 Score=111.79 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eeeEEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS--RQIRCN 216 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 216 (335)
.....|||+||++.+++++|+++|++||.|.++.+..+ .++|+|||+|.+.++|.+|++.|+|..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34467899999999999999999999999999998643 357899999999999999999999999965 999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998764
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-14 Score=102.43 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=71.2
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|+ ++++++|+++|+.||.|..+.+. .++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456689999996 89999999999999999999885 567899999999999999999999999999999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
|+..+..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9977654
No 332
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=112.19 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=67.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCc----eeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v----~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
....++|||+|||+++|+++|+++|+.||.| .+|++..+. ++|||||+|.+.++|.+|++. |+..+.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3456789999999999999999999999975 689988764 358999999999999999985 99999999999
Q ss_pred Eeeec
Q 019811 126 VNWAY 130 (335)
Q Consensus 126 v~~~~ 130 (335)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2e-15 Score=104.65 Aligned_cols=71 Identities=23% Similarity=0.439 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCcccCHHHHHHHhhhc----CCe-----eeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCc
Q 019811 261 QYTTVYVGNLAPEVTQLDLHRHFHSL----GAG-----VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (335)
Q Consensus 261 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~~-----~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~ 331 (335)
+.++|||+|||.++++++|+++|+.| |.. .+.++.+.+++|+|||+|.+.++|.+|+ .|||. .++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~---~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI---IFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC---EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC---EECCe
Confidence 34899999999999999999999999 711 4889999999999999999999999999 99999 99999
Q ss_pred cccC
Q 019811 332 QMKV 335 (335)
Q Consensus 332 ~l~v 335 (335)
+|+|
T Consensus 81 ~l~V 84 (87)
T 2hzc_A 81 SLKI 84 (87)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 9975
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=107.00 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCcceEEE--CCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 019811 138 TSGHFNIFV--GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-----GS 210 (335)
Q Consensus 138 ~~~~~~l~v--~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-----~g 210 (335)
..++++||| +||+.++++++|+++|++||.|..+.++. .+|||||+|.+.++|.+|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 77999999999999999999999987762 378999999999999999999999988 78
Q ss_pred eeeEEEEccCC
Q 019811 211 RQIRCNWATKG 221 (335)
Q Consensus 211 ~~l~v~~~~~~ 221 (335)
+.|.|.|+..-
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 99999998753
No 335
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=1.7e-15 Score=124.24 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=70.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccC--CceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.++ ++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999875 358999999999999999999999999999999998
Q ss_pred ecc
Q 019811 129 AYA 131 (335)
Q Consensus 129 ~~~ 131 (335)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 853
No 336
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=110.98 Aligned_cols=80 Identities=23% Similarity=0.214 Sum_probs=72.4
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCc----eeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSC----SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (335)
...++|||+|||+++|+++|+++|+.||.| ..+.++++ .+|+++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345799999999999999999999999875 68999988 5889999999999999999999985 99999999999
Q ss_pred EEEccC
Q 019811 215 CNWATK 220 (335)
Q Consensus 215 v~~~~~ 220 (335)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 337
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=5.4e-15 Score=105.53 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCcceEEEeCCCC-----CCCHHHHHHHHhccCCceeEEEeecC-----CCCeEEEEEcCHHHHHHHHHHhCCccccCc
Q 019811 53 PSTCRSVYVGNIHT-----QVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (335)
Q Consensus 53 ~~~~~~v~v~nlp~-----~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~ 122 (335)
+.++++|+|+|+.. +-++++|++.|++||.|.+|++..++ ++|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678899999963 23789999999999999999998753 469999999999999999999999999999
Q ss_pred eeEEeeecc
Q 019811 123 PIKVNWAYA 131 (335)
Q Consensus 123 ~l~v~~~~~ 131 (335)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=5.5e-15 Score=102.50 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=70.0
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
..++|||+|||.++++++|+++|+.| .|..+.+. .++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 568999999999999999999999999999999999986
Q ss_pred CCC
Q 019811 220 KGA 222 (335)
Q Consensus 220 ~~~ 222 (335)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 339
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=1.7e-15 Score=108.34 Aligned_cols=79 Identities=20% Similarity=0.420 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
....++|||+|||.++++++|+++|+.||.|.++++..++ .+|||||+|.+.++|.+|+. ++..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 3456889999999999999999999999999999999875 35899999999999999997 899999999999998
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7554
No 340
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=3.2e-15 Score=109.16 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCcccc
Q 019811 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (335)
Q Consensus 261 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~ 334 (335)
..++|||+|||+++++++|+++|+.|| .|..+.+..+ |+|||+|.+.++|.+|++.|||. .|+|++|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS--CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTC---BCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCC---EECCcEee
Confidence 348899999999999999999999999 5999999887 99999999999999999999999 99999854
No 341
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=115.70 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=73.2
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEE-----eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV-----MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~-----~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (335)
..++++|||+|||.++++++|+++|+.||.|..+.+ ++...++.++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345679999999999999999999999999877411 111246789999999999999999999999999999999
Q ss_pred eEEEEccCCC
Q 019811 213 IRCNWATKGA 222 (335)
Q Consensus 213 l~v~~~~~~~ 222 (335)
|.|.|+....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 342
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.3e-15 Score=99.30 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=66.4
Q ss_pred eEEECCCCccccHHH----HHHHhccCC-CceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 143 NIFVGDLSPEVTDAT----LFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 143 ~l~v~nlp~~~t~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
.|||+|||..+++++ |+++|++|| .|.+| ++ |+|||+|.+.++|.+|++.|+|..+.|+.|+|.|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 499999999999988 558999994 99888 23 8999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 019811 218 ATKGAGNNED 227 (335)
Q Consensus 218 ~~~~~~~~~~ 227 (335)
++........
T Consensus 81 A~~~sd~~~~ 90 (96)
T 2diu_A 81 TPKNRELCET 90 (96)
T ss_dssp SCCSCCCCCC
T ss_pred cCCCcceeEe
Confidence 9887655443
No 343
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=105.21 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=71.1
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceee-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (335)
...++|||+|||.++++++|+++|+.||.|..+ .++.++.+ +.|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446799999999999999999999999999999 47766443 3499999999999999999999999999999999
Q ss_pred ccCC
Q 019811 218 ATKG 221 (335)
Q Consensus 218 ~~~~ 221 (335)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9875
No 344
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=1.2e-14 Score=106.76 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=70.3
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--eeeEEE
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF-GFVSFRNQQDAQSAINDLTGKWLGS--RQIRCN 216 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 216 (335)
.-..|||+||++.+|+++|+++|++||.|.++.+..+ .+|+ |||+|.+.++|.+|++.|+|..+.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3356889999999999999999999999999988753 2566 9999999999999999999999987 999999
Q ss_pred EccCCCC
Q 019811 217 WATKGAG 223 (335)
Q Consensus 217 ~~~~~~~ 223 (335)
|++....
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9987653
No 345
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=8.5e-15 Score=102.94 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=68.6
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEc
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 218 (335)
...++|||+|||.++++++|+++|+.||.|..+ +.++.++. ||||+|.+.++|.+|+. |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 44544544 99999999999999999 9999999999999987
Q ss_pred cCCC
Q 019811 219 TKGA 222 (335)
Q Consensus 219 ~~~~ 222 (335)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 346
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=2.1e-14 Score=128.74 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=73.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
.+.++|||+|||..+|+++|.++|+.||.|..|+|+.++ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999998764 4689999999999999999999999999999999999
Q ss_pred ccCC
Q 019811 130 YASG 133 (335)
Q Consensus 130 ~~~~ 133 (335)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 347
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=2.3e-15 Score=110.74 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCce--eeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
....++|||+|||+++|+++|+++|+.| .|. .+.+++++. |.++|||||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3455789999999999999999999999 677 899999876 89999999999999999999984 779999999999
Q ss_pred EEccC
Q 019811 216 NWATK 220 (335)
Q Consensus 216 ~~~~~ 220 (335)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=1.4e-14 Score=115.59 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHh--CCccccCceeEEeeeccCCCcc------CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEe
Q 019811 103 DRRSAAMAILSL--NGRHLFGQPIKVNWAYASGQRE------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (335)
Q Consensus 103 ~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~~~~~------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~ 174 (335)
+.+.+..|+... ....+.+...+|......+.+. .....++|||+|||.++++++|.++|+.||.|..+.++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567777787766 4555566656665553222111 11235789999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCC
Q 019811 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (335)
Q Consensus 175 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 221 (335)
++. ++.++|+|||+|.+.++|.+|+..+ +..+.|+.|.|.+...-
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 885 5889999999999999999999865 45999999999987653
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1.7e-14 Score=102.92 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCcceEEECCCCc-----cccHHHHHHHhccCCCceeeEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 019811 139 SGHFNIFVGDLSP-----EVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (335)
Q Consensus 139 ~~~~~l~v~nlp~-----~~t~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (335)
.++++|+|.|+.. +-++++|+++|++||.|.++.+++++.+ +.++|+|||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 2378999999999999999999988653 578999999999999999999999999999999
Q ss_pred eEEEEccC
Q 019811 213 IRCNWATK 220 (335)
Q Consensus 213 l~v~~~~~ 220 (335)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=5.3e-15 Score=120.54 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=71.1
Q ss_pred CCCcceEEEeCCCCCC---------CHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccc----
Q 019811 53 PSTCRSVYVGNIHTQV---------TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL---- 119 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~---------t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~---- 119 (335)
....++|||+|||..+ ++++|+++|++||.|.+|+++.+ +|||||.|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4567899999999998 79999999999999999999865 58999999999999999999999999
Q ss_pred --------cCceeEEeeeccCC
Q 019811 120 --------FGQPIKVNWAYASG 133 (335)
Q Consensus 120 --------~g~~l~v~~~~~~~ 133 (335)
.|+.|.|.|+...+
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=106.94 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=60.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeec-------CCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEE
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-------DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~-------~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (335)
...++|||+|||.++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568899999999999999999999999998 767654 347999999999999999999883 255666665
Q ss_pred eee
Q 019811 127 NWA 129 (335)
Q Consensus 127 ~~~ 129 (335)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=2.6e-14 Score=104.57 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=67.5
Q ss_pred ceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--eeeEEEEc
Q 019811 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF-GFVSFRNQQDAQSAINDLTGKWLGS--RQIRCNWA 218 (335)
Q Consensus 142 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 218 (335)
..|||+||+..+++++|+++|++||.|.++.+... .|+ |||+|.+.++|..|+..|+|..|.| +.|+|.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35689999999999999999999999999988642 275 9999999999999999999999977 68999999
Q ss_pred cCCCC
Q 019811 219 TKGAG 223 (335)
Q Consensus 219 ~~~~~ 223 (335)
+.+..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87653
No 353
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=2.3e-14 Score=99.36 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=62.1
Q ss_pred CCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCeeeEE
Q 019811 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW--LGSRQIRC 215 (335)
Q Consensus 138 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v 215 (335)
....++|||+|||.++++++|+++|++||.|.++.++++ ++|||||+|.+.++|.+ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345679999999999999999999999999999998853 68999999999999983 45544 56999999
Q ss_pred EEccCCC
Q 019811 216 NWATKGA 222 (335)
Q Consensus 216 ~~~~~~~ 222 (335)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987654
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-14 Score=103.22 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=66.6
Q ss_pred CCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 019811 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (335)
Q Consensus 139 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (335)
...++|||+|||.++++++|+++|+.||.|. +.++.+..+ |.++|||||+|.+.++|.+|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4567899999999999999999999999999 778877666 6899999999999999999999883 367777766
Q ss_pred EEc
Q 019811 216 NWA 218 (335)
Q Consensus 216 ~~~ 218 (335)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 644
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=4.7e-14 Score=103.68 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=70.6
Q ss_pred CCCCcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 019811 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (335)
.....++|||+|+ ++++++|+++|+.||.|..+.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456689999996 69999999999999999999886 567899999999999999999999999999999999
Q ss_pred EccCCC
Q 019811 217 WATKGA 222 (335)
Q Consensus 217 ~~~~~~ 222 (335)
|+....
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998754
No 356
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.2e-14 Score=103.20 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=65.4
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHhccCCceeEEEeecCC----CCeEEEEEcC----HHH----HHHHHH--HhCCcc
Q 019811 57 RSVYVGNI----HTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFD----RRS----AAMAIL--SLNGRH 118 (335)
Q Consensus 57 ~~v~v~nl----p~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afv~f~~----~~~----A~~a~~--~l~~~~ 118 (335)
..|||+|| |+.+++.+|+++|+.||.|.++.++.|+. +|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 56999999 99999999999999999999999999875 4899999996 444 788888 789999
Q ss_pred ccCceeEEeeec
Q 019811 119 LFGQPIKVNWAY 130 (335)
Q Consensus 119 ~~g~~l~v~~~~ 130 (335)
|.|++|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998764
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=98.65 Aligned_cols=77 Identities=26% Similarity=0.322 Sum_probs=65.3
Q ss_pred CcceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEcc
Q 019811 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (335)
Q Consensus 140 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 219 (335)
.+++|||+|||.++++++|+++|+.||.|..+.++++ ++|||||+|.+.++|.++.. ....+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4579999999999999999999999999999998743 68899999999999976432 2345689999999987
Q ss_pred CCCC
Q 019811 220 KGAG 223 (335)
Q Consensus 220 ~~~~ 223 (335)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=8.8e-14 Score=99.28 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCcceEEEeCC--CCCCC--------HHHHHHHHhccCCceeEEEeecC------CCCeEEEEEcCHHHHHHHHHHhCCc
Q 019811 54 STCRSVYVGNI--HTQVT--------EPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGR 117 (335)
Q Consensus 54 ~~~~~v~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~~~~~~------~~g~afv~f~~~~~A~~a~~~l~~~ 117 (335)
.+++.|.|.|+ |.++. +++|++.|++||.|.+|+|.+++ ++|+|||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 44443 47899999999999999998764 4699999999999999999999999
Q ss_pred cccCceeEEeeecc
Q 019811 118 HLFGQPIKVNWAYA 131 (335)
Q Consensus 118 ~~~g~~l~v~~~~~ 131 (335)
.+.|+.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=9.9e-14 Score=110.69 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=68.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeecc
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (335)
..++|||+|||.++|+++|+++|+.||.|.+|++.++. .+|||||+|.+.++|.+|+..+ +..+.|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 35889999999999999999999999999999998754 3589999999999999999765 4589999999998765
Q ss_pred C
Q 019811 132 S 132 (335)
Q Consensus 132 ~ 132 (335)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1.5e-13 Score=99.99 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=66.9
Q ss_pred CcceEEEeCCC--CCC---CHHHHHHHHhccCCceeEEEeecCC--------CCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 55 TCRSVYVGNIH--TQV---TEPLLQEVFSSTGPVEGCKLIRKDK--------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 55 ~~~~v~v~nlp--~~~---t~~~l~~~f~~~G~v~~v~~~~~~~--------~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
++++|+|+|+- .++ -+++|++.|++||.|.+|+|..++. +|++||+|.+.++|.+|+..|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46789999984 333 3799999999999999999988642 3899999999999999999999999999
Q ss_pred ceeEEeeecc
Q 019811 122 QPIKVNWAYA 131 (335)
Q Consensus 122 ~~l~v~~~~~ 131 (335)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 361
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.48 E-value=2.8e-13 Score=97.80 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCcceEEEeCCCCCCC----------HHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCc
Q 019811 53 PSTCRSVYVGNIHTQVT----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t----------~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~ 122 (335)
+.+++.|.|.|+=..-. +++|++.|++||.|.+|.+.++..+|++||+|.+.++|.+|++.|||..|.|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45678899999743221 46889999999999999998877789999999999999999999999999999
Q ss_pred eeEEeeec
Q 019811 123 PIKVNWAY 130 (335)
Q Consensus 123 ~l~v~~~~ 130 (335)
.|+|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999874
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=1.1e-13 Score=112.89 Aligned_cols=71 Identities=27% Similarity=0.429 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCccc---------CHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccc--
Q 019811 260 PQYTTVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL-- 328 (335)
Q Consensus 260 ~~~~~l~v~nlp~~~---------t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~-- 328 (335)
..+++|||+||+..+ ++++|+++|+.|| .|.+|++..++|+|||+|.+.++|..|+..|+|. .|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~---~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--DIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ---TLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC---CCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccC--CEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC---EEec
Confidence 355899999999998 7999999999999 6999999999999999999999999999999999 88
Q ss_pred ----------cCccccC
Q 019811 329 ----------FGKQMKV 335 (335)
Q Consensus 329 ----------~g~~l~v 335 (335)
+|+.|+|
T Consensus 207 ~~~~e~~~~~~gr~L~V 223 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLV 223 (240)
T ss_dssp TTSTTGGGGGGSCCCEE
T ss_pred cccccccccCCCCEEEE
Confidence 8998875
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=2.4e-13 Score=96.99 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=69.9
Q ss_pred CcceEEECCC--Cccc--------cHHHHHHHhccCCCceeeEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCce
Q 019811 140 GHFNIFVGDL--SPEV--------TDATLFACFSVYPSCSDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (335)
Q Consensus 140 ~~~~l~v~nl--p~~~--------t~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (335)
++++|.|.|+ |..+ .+++|++.|++||.|.++.+++++.+ +.++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678899998 3332 35799999999999999999988654 3578999999999999999999999999
Q ss_pred eCCeeeEEEEccC
Q 019811 208 LGSRQIRCNWATK 220 (335)
Q Consensus 208 ~~g~~l~v~~~~~ 220 (335)
++||.|.|.|...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-12 Score=94.91 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=69.9
Q ss_pred CCCCcceEEECCCCccc-----------cHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019811 137 DTSGHFNIFVGDLSPEV-----------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (335)
Q Consensus 137 ~~~~~~~l~v~nlp~~~-----------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (335)
.+.++++|+|.||.... ++++|+++|++||.|..+.+ .++ .++|+|||+|.+.++|.+|+..|+|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 44567899999994332 26899999999999999965 443 4799999999999999999999999
Q ss_pred ceeCCeeeEEEEccCCC
Q 019811 206 KWLGSRQIRCNWATKGA 222 (335)
Q Consensus 206 ~~~~g~~l~v~~~~~~~ 222 (335)
..+.|+.|.|.++....
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999987654
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=4.4e-13 Score=97.43 Aligned_cols=81 Identities=11% Similarity=0.249 Sum_probs=70.0
Q ss_pred CcceEEECCCCc--cc---cHHHHHHHhccCCCceeeEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019811 140 GHFNIFVGDLSP--EV---TDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (335)
Q Consensus 140 ~~~~l~v~nlp~--~~---t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (335)
++++|+|.|+-. ++ .+++|++.|++||.|.++.|++++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999842 22 3789999999999999999998864 34577999999999999999999999999999
Q ss_pred eeeEEEEccC
Q 019811 211 RQIRCNWATK 220 (335)
Q Consensus 211 ~~l~v~~~~~ 220 (335)
|.|.|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999754
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-12 Score=91.53 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=64.5
Q ss_pred cceEEEeCCC-------CCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 56 CRSVYVGNIH-------TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 56 ~~~v~v~nlp-------~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
.++|.|.-.+ .++++++|+++|++||.|.+|.+. .+++|||||+|.+.++|..|++.+++ +.|++|+|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEE
Confidence 5568887665 458999999999999999999987 46679999999999999999987544 6799999999
Q ss_pred eccCCC
Q 019811 129 AYASGQ 134 (335)
Q Consensus 129 ~~~~~~ 134 (335)
+.+...
T Consensus 87 a~~~~~ 92 (100)
T 2d9o_A 87 LEGQPQ 92 (100)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 876653
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=1.8e-13 Score=97.57 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=63.2
Q ss_pred ECCCCccccHHHHHHHh------------ccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 019811 146 VGDLSPEVTDATLFACF------------SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (335)
Q Consensus 146 v~nlp~~~t~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (335)
+.||+..+++++|.+.| ++||.|.++.+.++.. +.++|+|||+|.+.++|.+|+..|+|..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55777777777766665 9999999999998754 7889999999999999999999999999999999
Q ss_pred EEEEc
Q 019811 214 RCNWA 218 (335)
Q Consensus 214 ~v~~~ 218 (335)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=9.5e-14 Score=98.99 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=59.8
Q ss_pred EeCCCCCCCHHHHHHHH------------hccCCceeEEEeecC---CCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 61 VGNIHTQVTEPLLQEVF------------SSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 61 v~nlp~~~t~~~l~~~f------------~~~G~v~~v~~~~~~---~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
+.|||..+++++|++.| ++||.|.+|++.++. ++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666777777776666 999999999998865 469999999999999999999999999999999
Q ss_pred Eeee
Q 019811 126 VNWA 129 (335)
Q Consensus 126 v~~~ 129 (335)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=9e-13 Score=113.27 Aligned_cols=76 Identities=24% Similarity=0.394 Sum_probs=65.4
Q ss_pred CCCcceEEEeC--CCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCcccc---Cc--eeE
Q 019811 53 PSTCRSVYVGN--IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF---GQ--PIK 125 (335)
Q Consensus 53 ~~~~~~v~v~n--lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~---g~--~l~ 125 (335)
..++++|||+| |+.++|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 45678899999 578999999999999999999987754 5689999999999999999999999884 44 577
Q ss_pred Eeeec
Q 019811 126 VNWAY 130 (335)
Q Consensus 126 v~~~~ 130 (335)
+.++.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 77763
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=9.2e-12 Score=89.78 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCcceEEECCCCcc----------ccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 139 SGHFNIFVGDLSPE----------VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 139 ~~~~~l~v~nlp~~----------~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
.++++|.|.|+-.. -.+++|++.|++||.|.++.+.++ ..+|++||+|.+.++|.+|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45678888888332 235789999999999999988755 2589999999999999999999999999
Q ss_pred CCeeeEEEEccC
Q 019811 209 GSRQIRCNWATK 220 (335)
Q Consensus 209 ~g~~l~v~~~~~ 220 (335)
+|+.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999854
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=5e-12 Score=108.63 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=57.6
Q ss_pred CCCCeEEEcC--CCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 260 PQYTTVYVGN--LAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 260 ~~~~~l~v~n--lp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
.++++|||+| |+..+|+++|+++|++|| .|.+|.+..+||||||+|.+.++|.+|++.|||.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G--~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTS--CEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 4558999999 578999999999999999 5888999889999999999999999999999999
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.3e-11 Score=83.63 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=57.5
Q ss_pred ccccHHHHHHHhccCCCceeeEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccCCC
Q 019811 151 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (335)
Q Consensus 151 ~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 222 (335)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|..|+..++ .+.|+.|+|.|+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCC
Confidence 578999999999999999999887 3678999999999999999999744 4689999999987654
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.2e-10 Score=83.84 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=65.6
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcC-HHHHHHHHHHh--CCccccCceeEEeee
Q 019811 54 STCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFD-RRSAAMAILSL--NGRHLFGQPIKVNWA 129 (335)
Q Consensus 54 ~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~-~~~A~~a~~~l--~~~~~~g~~l~v~~~ 129 (335)
...+.|+|+||+.+ +++++|+++|+.||.|..|.+..+.. .|||.|.+ ..+|..|+..+ ++..|.|..+++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 34578999999999 99999999999999999999988776 69999999 89999999998 478888888877654
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.7e-10 Score=83.19 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCCCCCeEEEcCCCcc-cCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCC-HHHHHHHHHhhc--CCCcccccCccc
Q 019811 258 NNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST-HAEAALAIQMGN--TTQSSYLFGKQM 333 (335)
Q Consensus 258 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~-~~~a~~A~~~l~--g~~~~~~~g~~l 333 (335)
..++++.|+|+||+.+ ++.++|+++|+.|| .|.+|.+.++...|||+|.+ ..+|..|+..|+ |. .|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G--~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~---~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHG--EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL---QLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSC--CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCB---CTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCc---EEeCcEE
Confidence 4456689999999999 99999999999999 69999999999999999999 899999999995 55 7877665
Q ss_pred c
Q 019811 334 K 334 (335)
Q Consensus 334 ~ 334 (335)
+
T Consensus 89 ~ 89 (121)
T 1owx_A 89 T 89 (121)
T ss_dssp E
T ss_pred E
Confidence 4
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.9e-10 Score=77.39 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=60.8
Q ss_pred cceEEEeCCCC----CCCH----HHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEe
Q 019811 56 CRSVYVGNIHT----QVTE----PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (335)
Q Consensus 56 ~~~v~v~nlp~----~~t~----~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (335)
..||+|.-.+. .+-. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 45688887762 3333 6789999999999999998876 9999999999999997 99999999999999
Q ss_pred eecc
Q 019811 128 WAYA 131 (335)
Q Consensus 128 ~~~~ 131 (335)
..++
T Consensus 82 lkt~ 85 (91)
T 2dnr_A 82 LKSP 85 (91)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8864
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=5.4e-10 Score=75.23 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=57.5
Q ss_pred CCCCCeEEEcCCCc----ccCH----HHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccC
Q 019811 259 NPQYTTVYVGNLAP----EVTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (335)
Q Consensus 259 ~~~~~~l~v~nlp~----~~t~----~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g 330 (335)
.|+..||+|.-.+. +..+ .+|.+.|+.|| .+..+++..++ +||+|.+.++|.+|++ |+|. .++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~---~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG--EVILIRFVEDK--MWVTFLEGSSALNVLS-LNGK---ELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC--CEEEEEECSSS--EEEEESSHHHHHHGGG-GTTC---EETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC--CeEEEEEecCC--EEEEECChHHHHHHHh-cCCe---EeCC
Confidence 34557888887662 3333 57899999999 69999999875 8999999999999998 9999 9999
Q ss_pred ccccC
Q 019811 331 KQMKV 335 (335)
Q Consensus 331 ~~l~v 335 (335)
|.|+|
T Consensus 76 r~LkV 80 (91)
T 2dnr_A 76 RTITI 80 (91)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99986
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.5e-09 Score=73.38 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=60.6
Q ss_pred CcceEEEeCCCCC-----CCH----HHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeE
Q 019811 55 TCRSVYVGNIHTQ-----VTE----PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (335)
Q Consensus 55 ~~~~v~v~nlp~~-----~t~----~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (335)
+..||+|.-++.+ +-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |||..+.|+.|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 3457999988742 322 5688999999999999998887 9999999999999998 999999999999
Q ss_pred Eeeec
Q 019811 126 VNWAY 130 (335)
Q Consensus 126 v~~~~ 130 (335)
|.+..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98753
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=2.6e-09 Score=73.53 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=65.2
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhc-----CCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~-----G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
++|-+-|||+.+++..|+.+.+++ | .+..+.+..+.+.|+|+|.|...|.+|.-.|+|. .|.||+|+|
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g--~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~---ef~gr~Lr~ 94 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEK--DIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGS---QFQGKVIRS 94 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTT--TCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSE---EETTEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCcc--ceeEEEEecCCCceEEEEccchhhHHHHhhcCCe---eecCeEEEe
Confidence 789999999999999999999999 8 5999999999999999999999999999999999 999999985
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=8.5e-10 Score=74.59 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=58.4
Q ss_pred CCCCCCeEEEcCCCcc-----cCH----HHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccc
Q 019811 258 NNPQYTTVYVGNLAPE-----VTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (335)
Q Consensus 258 ~~~~~~~l~v~nlp~~-----~t~----~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 328 (335)
..|+..||+|.-++.. ..+ .+|.+.|+.|| .+..+++..++ +||+|.+.++|.+|++ |+|. .+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~---~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG--TIVLVRINQGQ--MLVTFADSHSALSVLD-VDGM---KV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS--CCSEEEEETTE--EEEECSCSHHHHHHHH-GGGS---EE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC--CEEEEEEecCc--EEEEEcChHHHHHHHh-cCCe---ee
Confidence 4456688999888642 223 46889999999 58888998875 9999999999999998 9999 99
Q ss_pred cCccccC
Q 019811 329 FGKQMKV 335 (335)
Q Consensus 329 ~g~~l~v 335 (335)
+||.|+|
T Consensus 83 ~Gr~L~V 89 (95)
T 1ufw_A 83 KGRAVKI 89 (95)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 9999986
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=7.1e-09 Score=84.68 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=60.9
Q ss_pred ccHHHHHHHhccCCCceeeEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEEccC
Q 019811 153 VTDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (335)
Q Consensus 153 ~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 220 (335)
-.+++|.+.|++||.|.++.+.++.. ++.++|++||+|.+.++|.+|+..|+|+.+.||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35789999999999999999986643 347899999999999999999999999999999999999754
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=2.3e-08 Score=81.66 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=61.6
Q ss_pred cceEEEeCCC-----CCCCHHHHHHHHhccCCceeEEEeecC--------CCCeEEEEEcCHHHHHHHHHHhCCccccCc
Q 019811 56 CRSVYVGNIH-----TQVTEPLLQEVFSSTGPVEGCKLIRKD--------KSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (335)
Q Consensus 56 ~~~v~v~nlp-----~~~t~~~l~~~f~~~G~v~~v~~~~~~--------~~g~afv~f~~~~~A~~a~~~l~~~~~~g~ 122 (335)
+..+.+.|+- .+-.+++|++.|++||.|.++++.++. .+|++||+|.+.++|.+|+..|||..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3445555542 123468999999999999999997542 348999999999999999999999999999
Q ss_pred eeEEeeec
Q 019811 123 PIKVNWAY 130 (335)
Q Consensus 123 ~l~v~~~~ 130 (335)
.|.+.++.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999874
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=2e-07 Score=64.23 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=66.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc-----CCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeee
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSST-----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~-----G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (335)
..++|-+-|||..++...|+.+.++| |.+..|.+..+-. =|+|+|.+...|.+|...|+|..|.|++|++.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 46789999999999999999999999 9999998877764 5999999999999999999999999999998643
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2e-06 Score=58.91 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc---c--CCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEee
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSS---T--GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~---~--G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (335)
+..++|.|.|||.++.++.|.-+|+. . |+|.+++... +-|+|.|.+.+.|++.+.. ....+.+.+|.|..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 34578999999999999999999987 2 4888888755 4699999999999999853 36788889999987
Q ss_pred eccCCCccCCCCcceEEECCCCcccc
Q 019811 129 AYASGQREDTSGHFNIFVGDLSPEVT 154 (335)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~t 154 (335)
..+.. ..++++.+|++.++
T Consensus 81 ~~~~~-------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 APPRA-------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCCCC-------CCCCCCCSCCCCCC
T ss_pred CCCCC-------cceEeeecCCCCCC
Confidence 65443 35788999988754
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.5e-05 Score=54.50 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=55.7
Q ss_pred CeEEEcCCCcccCHHHHHHHhhh---cCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHS---LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~---~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.+|.|.|||++++++.|.-+|++ -|...+..+.... +.|+|+|.+...|.+.++.- .+ .|+|..|.|
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~-~H---~L~~~~LsV 78 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQA-DH---ELHGAQLSL 78 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCS-CC---BSSSSBCEE
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCC-cc---eecCeEEEE
Confidence 78999999999999999999997 4667899998887 79999999999999998652 23 466666543
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.08 E-value=8.8e-06 Score=55.99 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=63.2
Q ss_pred cceEEEeCCCCCC-C----HHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccCceeEEeeec
Q 019811 56 CRSVYVGNIHTQV-T----EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (335)
Q Consensus 56 ~~~v~v~nlp~~~-t----~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (335)
..+|+|.||+.++ . .+.++++|..|+++......+.-. -..|.|.++++|.+|...|++..+.|+.+++.++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 3569999999876 3 257789999999998877776654 48999999999999999999999999999999886
Q ss_pred c
Q 019811 131 A 131 (335)
Q Consensus 131 ~ 131 (335)
+
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.08 E-value=6.4e-06 Score=56.69 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=58.9
Q ss_pred CeEEEcCCCccc-CH----HHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 263 TTVYVGNLAPEV-TQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 263 ~~l~v~nlp~~~-t~----~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
++|+|.||+.++ .. +.++++|..|+ ........++=....|.|.+.++|.+|...||+. .|+|++|+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~--~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~---~f~g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD--KDTTFQYFKSFKRVRINFSNPLSAADARLRLHKT---EFLGKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC--SSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTS---EETTEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC--cCcceeecCcceEEEEEeCChHHHHHHHHHhccc---eecCceeEE
Confidence 789999998876 22 56789999998 4677788888778899999999999999999999 999999875
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.02 E-value=3.3e-05 Score=52.13 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC
Q 019811 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (335)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 115 (335)
.+.....++| +.|..+...||.++|+.||.| .|+-+.+. .|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3445566677 999999999999999999976 45555555 59999999999999998753
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.84 E-value=6.6e-05 Score=50.82 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=54.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCC------CCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~------~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
..|-|++||+.+|++++.+.+..+..+........+. ..-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4689999999999999999999988776555554432 2579999999999999999999988864
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.83 E-value=0.00021 Score=48.32 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~ 321 (335)
..++| ++|..+...||..+|+.||.+.|..|. .-.|||.|.+.+.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999965555543 5689999999999999998774
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.55 E-value=0.00027 Score=47.83 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=52.3
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecc--------cceEEEEeCCHHHHHHHHHhhcCCCcccccCc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~ 331 (335)
..|.|++||+++|++++.+.+.... .+....+..+ ...|||.|.+.+++..-.+.++|+ .|-+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~---~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY---VFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC---EEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc---EEEcC
Confidence 4699999999999999999999887 3545544332 257999999999999999999999 66543
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00096 Score=47.28 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=59.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCccccC-ceeEEeeec
Q 019811 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-QPIKVNWAY 130 (335)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~~~ 130 (335)
....+.|.|-+.|... .+.|...|++||.|.+... ....++..|.|.+..+|++||. .||..+.| -.|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3446779999999985 7889999999999988765 3345799999999999999995 69998874 556666543
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.39 E-value=0.00017 Score=48.93 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=44.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC
Q 019811 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (335)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 115 (335)
.++| +.|..+...||.++|+.||.| .|+-+.+. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3555 999999999999999999955 45555555 59999999999999998764
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00035 Score=47.34 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=44.5
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~ 321 (335)
..++| ++|..+...||..+|+.||+ ..|+... ...|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg---v~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN---IQISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE---EEEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC---EEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999985 3444433 5689999999999999998774
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.0018 Score=45.90 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=52.1
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCc
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~ 331 (335)
+.|.|-++|+.. .+.|...|++|| .|.+........+..|+|.+..+|.+|+. .||. .|+|.
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G--~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~---ii~g~ 86 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYG--NILKHVMSNTGNWMHIRYQSKLQARKALS-KDGR---IFGES 86 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTS--CEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTC---EETTT
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhC--cEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCe---EecCC
Confidence 678888999885 667889999999 58887776677899999999999999995 4888 77654
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.17 E-value=0.00042 Score=47.15 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=49.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecC------CCCeEEEEEcCHHHHHHHHHHhCCccccC
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~g~afv~f~~~~~A~~a~~~l~~~~~~g 121 (335)
+..|-||.||+.+|++++.+.++.+-.+........+ .-.-|||.|.+.++.....+..+|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4569999999999999988888765443222211111 11469999999999999999999988864
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.88 E-value=0.0014 Score=47.02 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=54.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCcee-EEEee------------c-----CCCCeEEEEEcCHHHHHHHHHHhCCcc
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIR------------K-----DKSSYGFIHYFDRRSAAMAILSLNGRH 118 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-v~~~~------------~-----~~~g~afv~f~~~~~A~~a~~~l~~~~ 118 (335)
..|.|-+.|.+. ...+.+.|++||.|.+ +...+ . ...++..|.|.+..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 348899997776 6788899999999866 21111 0 023588999999999999995 69999
Q ss_pred ccCceeEEeeec
Q 019811 119 LFGQPIKVNWAY 130 (335)
Q Consensus 119 ~~g~~l~v~~~~ 130 (335)
|.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877777664
No 397
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.75 E-value=0.00043 Score=66.37 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=4.8
Q ss_pred CCHHHHHHHH
Q 019811 68 VTEPLLQEVF 77 (335)
Q Consensus 68 ~t~~~l~~~f 77 (335)
.+...+.+++
T Consensus 132 ~~~~~l~~~~ 141 (727)
T 4b8c_D 132 CTKQALMEMA 141 (727)
T ss_dssp CCCHHHHHHH
T ss_pred cchhhhhhhh
Confidence 3444455554
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.64 E-value=0.0026 Score=43.28 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=49.8
Q ss_pred cceEEECCCCccccHHHHHHHhccCCCceeeEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCcee
Q 019811 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (335)
Q Consensus 141 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (335)
+-+|.|+.||+.+||+++.+.++..-.+.....+....+. .....|||.|.+.++...-.+.++|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 3579999999999999999888776444333332211111 1234589999999999999999999876
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.62 E-value=0.0014 Score=58.42 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=41.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHH
Q 019811 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112 (335)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~ 112 (335)
.|+|+|. .|..+++.+|.++|++||+|.++.+..++. -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 4789998 799999999999999999999987765443 599999999999987653
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.59 E-value=0.0067 Score=54.05 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=41.6
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccc-eEEEEeCCHHHHHHHHHh
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQM 319 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g-~afV~f~~~~~a~~A~~~ 319 (335)
++|+|. .|...++.+|.++|+.|| .|.++.+.+++| +|.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g--~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFG--PINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGS--CCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcC--CcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 789997 799999999999999999 588888888876 899999999998877643
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.14 E-value=0.02 Score=41.14 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=45.3
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEe-------------------cccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ-------------------RDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~-------------------~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
..|.|-+.|+..+ ..|.+.|++||. .++++... ....+..|+|++..+|.+|+ .-||.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~-IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGT-ILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSC-BCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhce-EeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 4577778866554 457789999994 22322211 13568899999999999999 55888
Q ss_pred CcccccCc
Q 019811 324 QSSYLFGK 331 (335)
Q Consensus 324 ~~~~~~g~ 331 (335)
.|+|.
T Consensus 85 ---ii~G~ 89 (132)
T 3p3d_A 85 ---VFNGV 89 (132)
T ss_dssp ---EETTE
T ss_pred ---EeCcE
Confidence 88886
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.66 E-value=0.24 Score=45.06 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC
Q 019811 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (335)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 115 (335)
.....++|+ +|..+...+|.+.|+.||.+ +|+.+.+. .|||.|.+.+.|..++..++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHH
Confidence 344566776 99999999999999999966 55444443 69999999999999998875
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.20 E-value=1.6 Score=39.61 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=45.2
Q ss_pred CCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 262 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
...++|+ +|..+...+|.+.|+.||. .+|+.. +...|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWI-DDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEEC-SSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEE-cCCeEEEEECCHHHHHHHHHHHHhC
Confidence 3556665 9999999999999999994 344443 3568999999999999999988544
No 404
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=70.24 E-value=0.94 Score=37.69 Aligned_cols=14 Identities=50% Similarity=0.612 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH
Q 019811 3 HQRLKQQQQQQQQA 16 (335)
Q Consensus 3 ~q~~~qqqqqqq~~ 16 (335)
||+|+|.|+|.|++
T Consensus 3 ~~~~~~~~~~~~~~ 16 (283)
T 3ipq_A 3 HQHQHQHQHQHQQP 16 (283)
T ss_dssp --------------
T ss_pred chhHHHHHHhhhcc
Confidence 44444444444443
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.88 E-value=23 Score=23.18 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=45.1
Q ss_pred CCCeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 261 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
.++-|.|-|+|..+-..++.-.....|. -..+... .|.|.+.|.+.++-..|+..|-+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgy--efycdyi--dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGY--EFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCC--CEEEEEC--SSCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCe--eEeeeee--cCeeEEEecCChHHHHHHHHHHhc
Confidence 3477899999999888887777777773 3334433 578999999999999999877443
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=59.22 E-value=21 Score=26.91 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=33.8
Q ss_pred CeEEEcCCCc-c--------cCHHHHHHHh--hhcCCeeeEEEEEecc-cceEEEEeCCHHH
Q 019811 263 TTVYVGNLAP-E--------VTQLDLHRHF--HSLGAGVIEEVRVQRD-KGFGFVRYSTHAE 312 (335)
Q Consensus 263 ~~l~v~nlp~-~--------~t~~~l~~~f--~~~G~~~i~~v~~~~~-~g~afV~f~~~~~ 312 (335)
.++.|.|+|. . .+..+|++.| +.|.++.+..+--... .|+|.|.|.+.-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 4678888887 2 3457899988 8898644444433333 5789999976533
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.01 E-value=29 Score=26.11 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=36.5
Q ss_pred eEEEeCCCC-C--------CCHHHHHHHH--hccCCceeEEEeecC--CCCeEEEEEcCHHHHH
Q 019811 58 SVYVGNIHT-Q--------VTEPLLQEVF--SSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAA 108 (335)
Q Consensus 58 ~v~v~nlp~-~--------~t~~~l~~~f--~~~G~v~~v~~~~~~--~~g~afv~f~~~~~A~ 108 (335)
.+.|-|+|. . .+..+|.+.| ..|.++. |+.+.+. ++|++.|.|.+.-.--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf 76 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGL 76 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHH
Confidence 467888886 2 4457899977 9999884 5555544 4689999999876643
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=49.83 E-value=43 Score=20.92 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=34.9
Q ss_pred ccCHHHHHHHhhhcC---CeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCCCcccccCccccC
Q 019811 273 EVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKV 335 (335)
Q Consensus 273 ~~t~~~l~~~f~~~G---~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~g~~l~v 335 (335)
.++..+|..++..-+ ...|-.+.+..+ +.||+-. ...+..++..|++. .+.|++++|
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~-~~~~~~~~~~l~~~---~i~g~~~~v 71 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEIL-NGKGPHVLKVMKNT---TVKGKQLKV 71 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEEC-TTCHHHHHHHHTTC---CC---CCCE
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEEC-HHHHHHHHHHhccc---cCcCceEEE
Confidence 567777777777443 234556666544 8888874 45577788889888 889988764
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.57 E-value=77 Score=20.65 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=45.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceeEEEeecCCCCeEEEEEcCHHHHHHHHHHh
Q 019811 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (335)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l 114 (335)
..|-+.|-|+|..+-..++.-.....|---.+. .-.|.|.+.|.+.++-+.|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycd----yidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCD----YIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEE----ECSSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeee----eecCeeEEEecCChHHHHHHHHH
Confidence 457789999999999999988888887543443 33467999999999999999875
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.42 E-value=60 Score=21.24 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=39.8
Q ss_pred EEcCCCcccCHHHHHHHhhh-cCCeeeEEEEEec---ccceEEEEeCCHHHHHHHHHhh
Q 019811 266 YVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMG 320 (335)
Q Consensus 266 ~v~nlp~~~t~~~l~~~f~~-~G~~~i~~v~~~~---~~g~afV~f~~~~~a~~A~~~l 320 (335)
++-.++.+.+..+|+..++. || +.+..|.... +...|||++....+|......+
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~-VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFN-VKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTT-CCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEcCCCCHHHHHHHHHHHcC-CCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 33356778899999999986 55 6888887653 3457999998888877765443
No 411
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.42 E-value=63 Score=22.08 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=25.2
Q ss_pred CceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhC
Q 019811 82 PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (335)
Q Consensus 82 ~v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 115 (335)
.|.++- ..+.-+||-||+=.+..+...|++.+.
T Consensus 40 ~I~Si~-~~~~lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 40 QIKSVV-APEHVKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCCEEE-ECTTCCSEEEEEESSHHHHHHHHTTCG
T ss_pred ceEEEE-ecCCCceEEEEEeCCHHHHHHHHhccc
Confidence 365653 345568999999999999999987543
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.19 E-value=1.5e+02 Score=19.44 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=31.5
Q ss_pred HHHHHhhhcCCeeeEEEEEecc-cceEEEEeCCHHHHHHHHHhhcCC
Q 019811 278 DLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 278 ~l~~~f~~~G~~~i~~v~~~~~-~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
.|.......| ..+..+.++.. .|+.||+++..++...++....|.
T Consensus 28 ~L~~~~~~~~-l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 28 LMASRAEKEQ-LDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHTT-CCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHhcC-CcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 3444444445 24666666643 799999999999998888777665
No 413
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.61 E-value=83 Score=20.48 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=37.1
Q ss_pred EcCCCcccCHHHHHHHhhh-cCCeeeEEEEEec---ccceEEEEeCCHHHHHHHH
Q 019811 267 VGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAI 317 (335)
Q Consensus 267 v~nlp~~~t~~~l~~~f~~-~G~~~i~~v~~~~---~~g~afV~f~~~~~a~~A~ 317 (335)
+-.++.+.+.-+|+..++. || +.+..|.... +...|||++....+|....
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf~-VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQYD-VTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHC-CCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhC-CCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 3356788999999999985 66 6888887653 3457999998777665544
No 414
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.40 E-value=70 Score=26.08 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=22.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCce
Q 019811 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVE 84 (335)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~ 84 (335)
..+.|+|||+.++..-|..++.. +.+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCC
Confidence 45899999999999999999987 5553
No 415
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=21.17 E-value=1.8e+02 Score=22.41 Aligned_cols=34 Identities=6% Similarity=-0.043 Sum_probs=25.8
Q ss_pred ceeEEEeecCCCCeEEEEEcCHHHHHHHHHHhCCc
Q 019811 83 VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117 (335)
Q Consensus 83 v~~v~~~~~~~~g~afv~f~~~~~A~~a~~~l~~~ 117 (335)
|.++ +..+.-+||-||+=.+..+..+|++.+.+.
T Consensus 139 I~Si-~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSI-FQRDNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEE-ECCTTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEE-EecCCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 5554 334556899999999999999999876553
No 416
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.95 E-value=1.4e+02 Score=17.78 Aligned_cols=57 Identities=5% Similarity=-0.006 Sum_probs=42.8
Q ss_pred CeEEEcCCCcccCHHHHHHHhhhcCCeeeEEEEEecccceEEEEeCCHHHHHHHHHhhcCC
Q 019811 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (335)
Q Consensus 263 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~i~~v~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 323 (335)
.++.|.++.-..=...|...+.. .. +..+.+....+.+.|+|.+.+...+++..+ |+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~g--v~~~~v~~~~~~~~v~~~~~~~i~~~i~~~-Gy 63 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AG--AKVEKVDLNEAVVAGNKEDVDKYIKAVEAA-GY 63 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TT--CEEEEECSSEEEEEEEGGGHHHHHHHHHHT-TC
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CC--cEEEEEEccCCEEEEEECCHHHHHHHHHHc-CC
Confidence 56888899887777888888888 53 777777777788999998666666676553 54
No 417
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.22 E-value=93 Score=19.09 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=11.6
Q ss_pred EEecccceEEEEeCCH
Q 019811 295 RVQRDKGFGFVRYSTH 310 (335)
Q Consensus 295 ~~~~~~g~afV~f~~~ 310 (335)
++...+..|+|.|.|-
T Consensus 32 kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 32 KVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEETTTTEEEEEETTT
T ss_pred EEecCCcEEEEEEccC
Confidence 4445578999999774
Done!