Query 019814
Match_columns 335
No_of_seqs 228 out of 750
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 100.0 2.9E-35 9.8E-40 245.8 11.8 115 140-254 4-119 (119)
2 1n1j_B NF-YC; histone-like PAI 100.0 3.9E-29 1.3E-33 201.7 9.6 94 161-254 2-97 (97)
3 2byk_A Chrac-16; nucleosome sl 99.9 6.1E-27 2.1E-31 201.2 7.1 95 171-265 14-109 (140)
4 1jfi_A Transcription regulator 99.9 8.8E-27 3E-31 188.7 6.7 87 172-258 7-93 (98)
5 2byk_B Chrac-14; nucleosome sl 99.8 6.9E-20 2.4E-24 155.0 6.9 78 174-251 7-85 (128)
6 1n1j_A NF-YB; histone-like PAI 99.8 1.3E-19 4.6E-24 144.2 6.2 85 173-260 5-90 (93)
7 1b67_A Protein (histone HMFA); 99.6 8.1E-15 2.8E-19 110.1 7.5 65 176-241 2-66 (68)
8 3b0c_W CENP-W, centromere prot 99.5 1.5E-14 5.1E-19 111.8 7.7 66 175-241 3-69 (76)
9 1jfi_B DR1 protein, transcript 99.4 9.3E-14 3.2E-18 124.1 7.4 79 172-251 11-90 (179)
10 1id3_C Histone H2A.1; nucleoso 99.4 3E-13 1E-17 115.3 8.2 77 174-250 23-99 (131)
11 2nqb_C Histone H2A; nucleosome 99.4 4.6E-13 1.6E-17 112.9 7.6 77 174-250 21-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.4 6E-13 2.1E-17 113.1 7.6 77 174-250 23-99 (129)
13 2f8n_G Core histone macro-H2A. 99.4 5.3E-13 1.8E-17 112.2 6.9 77 174-250 20-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.4 8.5E-13 2.9E-17 112.1 7.3 77 174-250 25-102 (128)
15 2f8n_K Histone H2A type 1; nuc 99.3 1.3E-12 4.6E-17 113.7 7.6 77 174-250 42-118 (149)
16 2jss_A Chimera of histone H2B. 99.2 3E-11 1E-15 107.8 7.3 77 174-250 103-180 (192)
17 1ku5_A HPHA, archaeal histon; 99.1 9.4E-11 3.2E-15 88.8 7.5 66 175-241 5-70 (70)
18 1f1e_A Histone fold protein; a 99.1 2.1E-10 7.2E-15 100.2 8.2 71 171-242 77-147 (154)
19 3b0c_T CENP-T, centromere prot 99.0 5.7E-10 2E-14 92.4 6.3 77 173-250 4-80 (111)
20 1f1e_A Histone fold protein; a 98.9 2.2E-09 7.5E-14 93.8 7.7 67 175-242 3-70 (154)
21 1tzy_D Histone H4-VI; histone- 98.9 3.9E-09 1.3E-13 85.9 7.9 67 176-243 29-95 (103)
22 2yfw_B Histone H4, H4; cell cy 98.9 3.8E-09 1.3E-13 86.0 7.7 67 176-243 29-95 (103)
23 2hue_C Histone H4; mini beta s 98.8 1.1E-08 3.8E-13 80.5 7.6 67 175-242 9-75 (84)
24 1id3_B Histone H4; nucleosome 98.8 1.5E-08 5.2E-13 82.8 7.7 67 175-242 27-93 (102)
25 1taf_B TFIID TBP associated fa 98.3 1.6E-06 5.3E-11 67.2 8.2 66 174-240 4-69 (70)
26 2hue_B Histone H3; mini beta s 97.9 1.7E-05 6E-10 62.4 6.3 65 177-241 7-72 (77)
27 3r45_A Histone H3-like centrom 97.8 3.4E-05 1.1E-09 67.9 6.6 78 163-240 64-147 (156)
28 3nqu_A Histone H3-like centrom 97.7 4.9E-05 1.7E-09 65.8 6.8 78 163-240 48-131 (140)
29 4dra_A Centromere protein S; D 97.7 3.8E-05 1.3E-09 64.4 5.8 64 182-245 33-98 (113)
30 3nqj_A Histone H3-like centrom 97.7 9.1E-05 3.1E-09 58.9 7.2 64 177-240 4-73 (82)
31 1tzy_C Histone H3; histone-fol 97.7 0.00011 3.6E-09 63.4 8.1 77 164-240 50-130 (136)
32 1taf_A TFIID TBP associated fa 97.7 0.00012 4E-09 56.3 7.1 62 180-242 5-66 (68)
33 2yfv_A Histone H3-like centrom 97.7 8.7E-05 3E-09 60.9 6.7 77 164-240 15-98 (100)
34 2ly8_A Budding yeast chaperone 97.6 0.00013 4.5E-09 61.7 6.6 54 190-243 60-113 (121)
35 3b0b_B CENP-S, centromere prot 97.5 9.3E-05 3.2E-09 61.4 5.3 64 182-245 25-90 (107)
36 3v9r_A MHF1, uncharacterized p 97.5 0.00015 5.1E-09 58.5 5.8 53 193-245 31-83 (90)
37 3ksy_A SOS-1, SON of sevenless 97.5 0.00023 7.8E-09 76.3 8.9 90 158-250 84-177 (1049)
38 3vh5_A CENP-S; histone fold, c 97.3 0.00028 9.6E-09 61.2 5.5 59 193-251 38-97 (140)
39 2l5a_A Histone H3-like centrom 97.2 0.00021 7.3E-09 66.3 4.3 58 184-242 169-226 (235)
40 4dra_E Centromere protein X; D 97.1 0.0022 7.6E-08 51.2 8.4 68 174-241 10-79 (84)
41 3b0b_C CENP-X, centromere prot 97.0 0.0021 7.3E-08 50.9 7.7 68 174-241 6-75 (81)
42 1tzy_B Histone H2B; histone-fo 96.9 0.002 6.7E-08 55.1 6.6 59 181-240 41-100 (126)
43 1bh9_B TAFII28; histone fold, 96.8 0.0022 7.4E-08 51.5 5.9 72 170-242 10-82 (89)
44 2nqb_D Histone H2B; nucleosome 96.7 0.0033 1.1E-07 53.5 6.7 60 180-240 37-97 (123)
45 2jss_A Chimera of histone H2B. 96.5 0.0044 1.5E-07 55.1 6.5 59 181-240 8-67 (192)
46 2l5a_A Histone H3-like centrom 95.6 0.02 6.9E-07 53.2 6.5 72 173-244 11-86 (235)
47 3v9r_B MHF2, uncharacterized p 93.8 0.18 6.2E-06 40.8 7.0 62 177-238 2-72 (88)
48 1h3o_B Transcription initiatio 93.7 0.16 5.6E-06 39.7 6.5 67 175-242 4-71 (76)
49 3kw6_A 26S protease regulatory 72.8 2 6.9E-05 31.6 2.4 42 200-241 27-72 (78)
50 2ly8_A Budding yeast chaperone 71.2 4 0.00014 34.4 4.1 77 175-253 3-86 (121)
51 3vlf_B 26S protease regulatory 60.3 3.8 0.00013 31.2 1.8 42 200-241 25-70 (88)
52 2dzn_B 26S protease regulatory 56.9 14 0.00046 27.5 4.3 32 211-242 37-68 (82)
53 2krk_A 26S protease regulatory 53.2 15 0.00052 28.0 4.1 40 202-241 37-80 (86)
54 3aji_B S6C, proteasome (prosom 51.3 14 0.00047 27.2 3.6 32 211-242 40-71 (83)
55 1wwi_A Hypothetical protein TT 50.7 19 0.00064 31.5 4.7 58 177-235 3-60 (148)
56 2v1u_A Cell division control p 49.8 42 0.0014 29.6 7.0 50 193-242 221-276 (387)
57 3uk6_A RUVB-like 2; hexameric 49.8 41 0.0014 30.0 7.1 64 178-241 260-329 (368)
58 1h3o_A Transcription initiatio 48.9 22 0.00076 27.7 4.5 43 180-223 10-52 (75)
59 4b4t_K 26S protease regulatory 48.6 10 0.00034 37.2 3.1 42 200-241 368-413 (428)
60 3k1j_A LON protease, ATP-depen 46.4 37 0.0013 33.8 6.8 49 194-242 314-375 (604)
61 1g8p_A Magnesium-chelatase 38 45.8 57 0.002 28.7 7.3 48 194-241 267-321 (350)
62 2qby_A CDC6 homolog 1, cell di 35.1 71 0.0024 28.0 6.1 50 194-243 218-273 (386)
63 3h4m_A Proteasome-activating n 29.9 52 0.0018 28.2 4.3 32 211-242 227-258 (285)
64 1lv7_A FTSH; alpha/beta domain 26.7 65 0.0022 27.4 4.3 31 211-241 221-251 (257)
65 1r4v_A Hypothetical protein AQ 24.1 38 0.0013 30.2 2.3 59 176-235 26-84 (171)
66 2c9o_A RUVB-like 1; hexameric 23.5 1.4E+02 0.0049 28.3 6.4 64 178-241 367-436 (456)
67 4b4t_J 26S protease regulatory 21.7 78 0.0027 31.0 4.3 42 200-241 343-388 (405)
68 1ixz_A ATP-dependent metallopr 21.6 85 0.0029 26.6 4.1 40 200-239 210-253 (254)
69 1fnn_A CDC6P, cell division co 21.5 2E+02 0.0067 25.4 6.5 49 194-242 214-274 (389)
70 4b4t_I 26S protease regulatory 20.6 85 0.0029 31.2 4.3 42 200-241 377-422 (437)
71 3bos_A Putative DNA replicatio 20.3 2.1E+02 0.0071 23.1 6.0 45 195-240 194-241 (242)
72 2qby_B CDC6 homolog 3, cell di 20.1 2.6E+02 0.0088 24.7 7.0 46 195-242 219-270 (384)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=100.00 E-value=2.9e-35 Score=245.82 Aligned_cols=115 Identities=53% Similarity=0.981 Sum_probs=109.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hccCCCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHH
Q 019814 140 YQQIHHQQQQQLQQQLQSFWANQYQEIEK-VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRS 218 (335)
Q Consensus 140 ~q~~~~~~~~~~qq~L~~FW~~q~~EiE~-~~Dfk~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA 218 (335)
|++..+.+..+++++|.+||+++++|+|+ ..|||++.||+||||||||.|+|+.+||+||++++++|||+||.+|+.+|
T Consensus 4 ~~~~~~~l~~~~~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A 83 (119)
T 4g92_C 4 WANVNQGLQGTARDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRA 83 (119)
T ss_dssp THHHHTTCCTHHHHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788999999999999999997 46999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccCHHHHHHHHhcCCcchhhhhcCCC
Q 019814 219 WNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 254 (335)
Q Consensus 219 ~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~DIVPr 254 (335)
+..|+.+|||||+++||+.||.+++.||||.|+||+
T Consensus 84 ~~~a~~~krktI~~~di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 84 WIHAEDNKRRTLQRSDIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp HHHHHHTTCSEECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred HHHHHhcccCccCHHHHHHHHhcCchhhHHHHhCCC
Confidence 999999999999999999999999999999999996
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=3.9e-29 Score=201.66 Aligned_cols=94 Identities=70% Similarity=1.081 Sum_probs=77.3
Q ss_pred HHHHHHHh--hccCCCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Q 019814 161 NQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA 238 (335)
Q Consensus 161 ~q~~EiE~--~~Dfk~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~A 238 (335)
++++|+++ ..|++.+.||+||||||||.|+|+.+||+||++++++|||+||.+|+.+||+.|+.+|||||+++||+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 2 SHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp ------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cHHHHHHhcccCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 46778877 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcchhhhhcCCC
Q 019814 239 ITRTDIFDFLVDIVPR 254 (335)
Q Consensus 239 V~~~d~FDFL~DIVPr 254 (335)
|.+++.|+||.|+||+
T Consensus 82 v~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 82 ITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HTTCGGGGGGTTTSCC
T ss_pred HhcCcHHHHHHhhCCC
Confidence 9999999999999996
No 3
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.93 E-value=6.1e-27 Score=201.23 Aligned_cols=95 Identities=20% Similarity=0.416 Sum_probs=70.5
Q ss_pred cCCCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCHHHHHHHHhcCCcchhhh
Q 019814 171 DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHT-EENKRRTLQKNDIAAAITRTDIFDFLV 249 (335)
Q Consensus 171 Dfk~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~A-qe~KRKTLqy~DIA~AV~~~d~FDFL~ 249 (335)
..+.+.||+||||||||.|+++.+||++|+++|++|||+||++|+.+||.+| +.+|||||+|+||+.||.+.+.|+||.
T Consensus 14 ~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 14 PTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp ---------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred cccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 4567899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCCcchhhhhhcC
Q 019814 250 DIVPREDLKDEVLASI 265 (335)
Q Consensus 250 DIVPr~~~~~e~l~s~ 265 (335)
||||.++...++++..
T Consensus 94 divP~ki~l~~~~~~~ 109 (140)
T 2byk_A 94 QIVPQKIRVHQFQEML 109 (140)
T ss_dssp TTSCSCC---------
T ss_pred ccccchhhHHHHHHHH
Confidence 9999999887766543
No 4
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.93 E-value=8.8e-27 Score=188.65 Aligned_cols=87 Identities=28% Similarity=0.330 Sum_probs=62.5
Q ss_pred CCCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhhc
Q 019814 172 FKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 251 (335)
Q Consensus 172 fk~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~DI 251 (335)
-..+.||++|||||||.|+|+.+||+||++++++|||+|+.+|+++||+.|+.+|||||+++||..||.+++.||||.||
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcch
Q 019814 252 VPREDLK 258 (335)
Q Consensus 252 VPr~~~~ 258 (335)
||+++.+
T Consensus 87 vp~k~~~ 93 (98)
T 1jfi_A 87 KEAELAA 93 (98)
T ss_dssp -------
T ss_pred CchHhhh
Confidence 9998765
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.79 E-value=6.9e-20 Score=155.04 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=71.9
Q ss_pred CCCCChHHHHHHHh-CCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhhc
Q 019814 174 NHSLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 251 (335)
Q Consensus 174 ~~~LPLARIKKIMK-sDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~DI 251 (335)
++.||+|||+|||| .+|++.+||+||.++|++|||+||.+|+.+|+.+|...+||||+++||..||...+.++||.++
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 46899999999999 6999999999999999999999999999999999999999999999999999999999999855
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.78 E-value=1.3e-19 Score=144.25 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=77.1
Q ss_pred CCCCCChHHHHHHHhCC-cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhhc
Q 019814 173 KNHSLPLARIKKIMKAD-EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 251 (335)
Q Consensus 173 k~~~LPLARIKKIMKsD-pDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~DI 251 (335)
.++.||++||+||||.+ |++.+||+||..++++|||+||.+|+.+|+.+|.+.|||||+++||..|++ .++|+.++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i 81 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYV 81 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhH
Confidence 35789999999999998 999999999999999999999999999999999999999999999999997 78899888
Q ss_pred CCCCcchhh
Q 019814 252 VPREDLKDE 260 (335)
Q Consensus 252 VPr~~~~~e 260 (335)
.|.+...++
T Consensus 82 ~~~~~~l~~ 90 (93)
T 1n1j_A 82 EPLKLYLQK 90 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876655443
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.55 E-value=8.1e-15 Score=110.14 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=62.5
Q ss_pred CCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 176 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 176 ~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.||+++|+||||.+ +..+||+||..++++|+|.|+.+|+.+|+.+|...|||||+++||..|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 58999999999999 779999999999999999999999999999999999999999999999865
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.53 E-value=1.5e-14 Score=111.80 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHh-CCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 175 HSLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 175 ~~LPLARIKKIMK-sDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
..||+|+|+|||| ..|+ ..||+||..+|.++||+||++|+.+|++.|+.++||||+++||..|++.
T Consensus 3 ~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5799999999999 6787 5899999999999999999999999999999999999999999999874
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.45 E-value=9.3e-14 Score=124.05 Aligned_cols=79 Identities=14% Similarity=0.306 Sum_probs=72.2
Q ss_pred CCCCCCChHHHHHHHhCC-cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 172 FKNHSLPLARIKKIMKAD-EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 172 fk~~~LPLARIKKIMKsD-pDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
..++.||+|+|.||||.. | ..+||+||..+|+++|++||.+|+..|++.|...+||||+++||..|+...+..+|+..
T Consensus 11 ~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~ 89 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISE 89 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHH
T ss_pred hhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHH
Confidence 345789999999999986 6 78999999999999999999999999999999999999999999999999888888774
Q ss_pred c
Q 019814 251 I 251 (335)
Q Consensus 251 I 251 (335)
+
T Consensus 90 l 90 (179)
T 1jfi_B 90 V 90 (179)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.42 E-value=3e-13 Score=115.26 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=74.6
Q ss_pred CCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 174 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
.+.||++||+||||.+....+|+++|+++++.++|+|+.++.+.|++.|+.++|++|+..||..||.++++|+||..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999984
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.39 E-value=4.6e-13 Score=112.93 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 174 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
.+.||++||+||||.+....+|+++|+++++.++|+|+.++.+.|++.|+.++|++|+..||..||.++++|++|..
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 47899999999999998899999999999999999999999999999999999999999999999999999999884
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.38 E-value=6e-13 Score=113.12 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 174 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
.+.||++||+||||.+....+|+++|+++++.++|+|+.++.+.|++.|+.++|++|+..||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 48899999999999998999999999999999999999999999999999999999999999999999999999984
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.38 E-value=5.3e-13 Score=112.16 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=74.2
Q ss_pred CCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 174 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
.+.||++||+|+||.+....+|+++|++.++.++|+|+.++.+.|.+.|+.+||++|+..||..||.++++|++|..
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 47899999999999988889999999999999999999999999999999999999999999999999999999984
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.36 E-value=8.5e-13 Score=112.06 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=73.5
Q ss_pred CCCCChHHHHHHHhCCcch-hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 174 NHSLPLARIKKIMKADEDV-RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV-~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
.+.||++||+|+||.+.+. .+|+++|+++++.++|+|+.++.+.|.+.|+.+|+++|+..||..||.++++|++|.+
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 4789999999999998876 4999999999999999999999999999999999999999999999999999999986
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.34 E-value=1.3e-12 Score=113.73 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 174 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
.+.||++||+||||.+....+|+++|+++++.++|+|+.++.+.|++.|+.++|++|+..||..||.++++|++|..
T Consensus 42 gLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 48899999999999998999999999999999999999999999999999999999999999999999999999884
No 16
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.18 E-value=3e-11 Score=107.77 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=73.7
Q ss_pred CCCCChHHHHHHHhCCcch-hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 174 NHSLPLARIKKIMKADEDV-RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV-~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
.+.||++||+|+||.+.+. .+|+.+|++.++.++|+|+.++.+.|.+.|+.+||++|+..||..||.++++|++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 5899999999999998776 5999999999999999999999999999999999999999999999999999999986
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.14 E-value=9.4e-11 Score=88.84 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 175 HSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 175 ~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
..||.++|+||+|.. ++.++|.+|...+..++|.|+..++..|...|+..|||||+.+||..|++.
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 469999999999975 789999999999999999999999999999999999999999999999863
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.08 E-value=2.1e-10 Score=100.25 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=66.5
Q ss_pred cCCCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 171 DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 171 Dfk~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
|--.+.||++.|.||||.. ++.+||.+|...++.++|.|+.+++..|.+.|+..|||||+.+||..|+++.
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3456789999999999997 7889999999999999999999999999999999999999999999998864
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.98 E-value=5.7e-10 Score=92.38 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=66.3
Q ss_pred CCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcchhhhh
Q 019814 173 KNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 250 (335)
Q Consensus 173 k~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~FDFL~D 250 (335)
++..||.+-|+||||.. .+.+||.++...+..+++.|++.++.+|...|+..|||||+.+||..|++++..+.|..+
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 45679999999999986 789999999999999999999999999999999999999999999999999876666444
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.91 E-value=2.2e-09 Score=93.82 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHhCC-cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 175 HSLPLARIKKIMKAD-EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 175 ~~LPLARIKKIMKsD-pDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
..||.+.|+||||.. ++ .+||.||...++.++|.|+.+++.+|.+.|++.|||||+..||..|+...
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 369999999999998 76 99999999999999999999999999999999999999999999999653
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.89 E-value=3.9e-09 Score=85.86 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCC
Q 019814 176 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 243 (335)
Q Consensus 176 ~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d 243 (335)
-||.++|+||++.. .+.+||.+|...++.++|.|+++++.+|...|+..+||||+.+||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 39999999999986 56899999999999999999999999999999999999999999999999763
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.88 E-value=3.8e-09 Score=86.04 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=62.7
Q ss_pred CCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCC
Q 019814 176 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 243 (335)
Q Consensus 176 ~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d 243 (335)
.||.++|+||++.. .+.+||.+|...++.++|.|+++++.+|...|+..+||||+.+||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 29 GITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp -CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 39999999999985 56899999999999999999999999999999999999999999999998753
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.80 E-value=1.1e-08 Score=80.46 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=63.7
Q ss_pred CCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 175 HSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 175 ~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
..||.+.|+||+|.. .+.+||.+|...+..++|.|++.++.+|...|+..|||||+.+||..|++..
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 459999999999985 6799999999999999999999999999999999999999999999999876
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.77 E-value=1.5e-08 Score=82.76 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 175 HSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 175 ~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
..||.+-|+||++.. .+.+||.+|...+..++|.|++.++.+|...|+..+||||+.+||..|++..
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 349999999999985 6799999999999999999999999999999999999999999999999875
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.35 E-value=1.6e-06 Score=67.17 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=62.0
Q ss_pred CCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Q 019814 174 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 240 (335)
Q Consensus 174 ~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~ 240 (335)
...||++-||+|.++ -++..+|.||...++.-+|.-+.+++.+|.+.++..|||||+.+||..|++
T Consensus 4 ~s~lp~~~v~~iaes-~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 357999999999998 566899999999999999999999999999999999999999999999975
No 26
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.92 E-value=1.7e-05 Score=62.36 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=52.8
Q ss_pred CChHH-HHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 177 LPLAR-IKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 177 LPLAR-IKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
+|..| ||.|...-..--+++++|...+..|+|.|+..|.+.|...|...||+||..+||.-|..-
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 44444 344444322236899999999999999999999999999999999999999999988653
No 27
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.79 E-value=3.4e-05 Score=67.94 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=55.7
Q ss_pred HHHHHhhccCCCCCCChHHHHHHHhCC-cc-----hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Q 019814 163 YQEIEKVNDFKNHSLPLARIKKIMKAD-ED-----VRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 236 (335)
Q Consensus 163 ~~EiE~~~Dfk~~~LPLARIKKIMKsD-pD-----V~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA 236 (335)
+.||..-....++.||.+.+.||+|.- .+ .-+++.+|+.+|..|+|.|+..|.+.|..+|...||+||..+||.
T Consensus 64 LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIq 143 (156)
T 3r45_A 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 143 (156)
T ss_dssp -----------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 566665444455666666666666541 22 248999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 019814 237 AAIT 240 (335)
Q Consensus 237 ~AV~ 240 (335)
.|..
T Consensus 144 LArr 147 (156)
T 3r45_A 144 LARR 147 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8854
No 28
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.75 E-value=4.9e-05 Score=65.80 Aligned_cols=78 Identities=24% Similarity=0.256 Sum_probs=53.6
Q ss_pred HHHHHh---hccCCCCCCChHHH-HHHHhC--CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Q 019814 163 YQEIEK---VNDFKNHSLPLARI-KKIMKA--DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 236 (335)
Q Consensus 163 ~~EiE~---~~Dfk~~~LPLARI-KKIMKs--DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA 236 (335)
+.||.. ..++--..+|..|+ +.|... +...-.++.+|..+|..|+|.|+..|.+.|..+|...||+||..+||.
T Consensus 48 LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiq 127 (140)
T 3nqu_A 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 127 (140)
T ss_dssp -----------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 555554 34444444555553 333321 111248999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 019814 237 AAIT 240 (335)
Q Consensus 237 ~AV~ 240 (335)
.|..
T Consensus 128 LArr 131 (140)
T 3nqu_A 128 LARR 131 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8854
No 29
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.74 E-value=3.8e-05 Score=64.45 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=55.0
Q ss_pred HHHHHhCC--cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcc
Q 019814 182 IKKIMKAD--EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 245 (335)
Q Consensus 182 IKKIMKsD--pDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~F 245 (335)
|.||++.. +.-..||.++...|+..++.|+..|+..+...|+..|||||+.+||..++++++.+
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L 98 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 98 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHH
Confidence 55666652 11134999999999999999999999999999999999999999999999999654
No 30
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.70 E-value=9.1e-05 Score=58.92 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=52.8
Q ss_pred CChHHHHHHHhC-Ccc-----hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Q 019814 177 LPLARIKKIMKA-DED-----VRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 240 (335)
Q Consensus 177 LPLARIKKIMKs-DpD-----V~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~ 240 (335)
+|.+...|++|. ..+ --+++++|..++..|+|.|+-.|.+.|..+|...||+||..+||.-|..
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 455555555553 122 2489999999999999999999999999999999999999999988754
No 31
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.70 E-value=0.00011 Score=63.35 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHhhccCCCCCCChHHHHHHHhCC----cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 019814 164 QEIEKVNDFKNHSLPLARIKKIMKAD----EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAI 239 (335)
Q Consensus 164 ~EiE~~~Dfk~~~LPLARIKKIMKsD----pDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV 239 (335)
.||..-....++.||.+.+.||++.- ..--+++.+|..+|..|+|.|+..|.+.+..+|...||+||..+||..|.
T Consensus 50 rEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 129 (136)
T 1tzy_C 50 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
T ss_dssp HHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHH
Confidence 34444333333445555444444431 12258999999999999999999999999999999999999999999886
Q ss_pred h
Q 019814 240 T 240 (335)
Q Consensus 240 ~ 240 (335)
.
T Consensus 130 r 130 (136)
T 1tzy_C 130 R 130 (136)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.66 E-value=0.00012 Score=56.32 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 180 ARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 180 ARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
-.|.+|+|+ -++..++.+++..|...++.++.+++++|...|+..+|+||+.+||..||+..
T Consensus 5 ~~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 357889998 77889999999999999999999999999999999999999999999999753
No 33
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.66 E-value=8.7e-05 Score=60.87 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=52.2
Q ss_pred HHHHhhccCCCCCCChHHHHHHHhCC----c---chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Q 019814 164 QEIEKVNDFKNHSLPLARIKKIMKAD----E---DVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 236 (335)
Q Consensus 164 ~EiE~~~Dfk~~~LPLARIKKIMKsD----p---DV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA 236 (335)
.||..-....++.||.+...|+++.- . +.-+++.+|..++..|+|.|+-.|.+.|..+|...||+||..+||.
T Consensus 15 rEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiq 94 (100)
T 2yfv_A 15 AEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 94 (100)
T ss_dssp -------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHH
Confidence 45544333334445555555554431 1 2468999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 019814 237 AAIT 240 (335)
Q Consensus 237 ~AV~ 240 (335)
.|..
T Consensus 95 La~r 98 (100)
T 2yfv_A 95 LARR 98 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8853
No 34
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00013 Score=61.73 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=51.5
Q ss_pred cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCC
Q 019814 190 EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 243 (335)
Q Consensus 190 pDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d 243 (335)
.+|++||.++...+..++|.|++.++.+|...|+..+||||+..||..|+++.-
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 678999999999999999999999999999999999999999999999998753
No 35
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.54 E-value=9.3e-05 Score=61.36 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=54.8
Q ss_pred HHHHHhCCcc--hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcc
Q 019814 182 IKKIMKADED--VRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 245 (335)
Q Consensus 182 IKKIMKsDpD--V~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~F 245 (335)
|.||++.... -..+|.+++..|+..++.|+..++..+...|+..|||||+.+||..++++++.+
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 5555554211 247999999999999999999999999999999999999999999999998653
No 36
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00015 Score=58.49 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=50.4
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcc
Q 019814 193 RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 245 (335)
Q Consensus 193 ~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~F 245 (335)
..||.++...|+..++.++..++..+...|+..|||||+.+||..++++++.+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 46999999999999999999999999999999999999999999999999765
No 37
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.48 E-value=0.00023 Score=76.34 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhh----ccCCCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHH
Q 019814 158 FWANQYQEIEKV----NDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 233 (335)
Q Consensus 158 FW~~q~~EiE~~----~Dfk~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~ 233 (335)
.|.-. |+... ..-..+.||++||.|.+ ..--..+|++.|++.++..+|++..++.+-|.+.|+..+++.|+..
T Consensus 84 ~~~~~--~~~~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~ 160 (1049)
T 3ksy_A 84 KWAIA--DAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQ 160 (1049)
T ss_dssp HHHHH--HHHHHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHH
T ss_pred HHHHH--HHHHhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCc
Confidence 68743 34322 23336889999999999 4344579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhhhh
Q 019814 234 DIAAAITRTDIFDFLVD 250 (335)
Q Consensus 234 DIA~AV~~~d~FDFL~D 250 (335)
||..||.+++.++-|.+
T Consensus 161 ~~~~ai~~d~eL~~l~~ 177 (1049)
T 3ksy_A 161 DIKVAMCADKVLMDMFH 177 (1049)
T ss_dssp HHHHHHHHCSSHHHHCC
T ss_pred cccccccCCHHHHHHHh
Confidence 99999999998766653
No 38
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.29 E-value=0.00028 Score=61.18 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=53.1
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCcc-hhhhhc
Q 019814 193 RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF-DFLVDI 251 (335)
Q Consensus 193 ~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~F-DFL~DI 251 (335)
..||.++...|+..++.|+..|+..+...|++.||+||+.+||..++++++.+ ++|.+.
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~ 97 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQK 97 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999664 444444
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00021 Score=66.34 Aligned_cols=58 Identities=22% Similarity=0.163 Sum_probs=52.4
Q ss_pred HHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 184 KIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 184 KIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
||.+. ..|++||.++...+..++|.|++.++.+|...|+..+||||+..||..|++..
T Consensus 169 RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 169 EDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp TTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 44443 56889999999999999999999999999999999999999999999998864
No 40
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.08 E-value=0.0022 Score=51.24 Aligned_cols=68 Identities=9% Similarity=0.283 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHhC--CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 174 NHSLPLARIKKIMKA--DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 174 ~~~LPLARIKKIMKs--DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
...||..-|.||++. ..+-.+||.||..++++-+++|+.+-+.||...|+..+...|..+||.+.+-+
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 467999999999997 35778999999999999999999999999999999888889999999986543
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.03 E-value=0.0021 Score=50.87 Aligned_cols=68 Identities=7% Similarity=0.258 Sum_probs=60.8
Q ss_pred CCCCChHHHHHHHhC--CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 174 NHSLPLARIKKIMKA--DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 174 ~~~LPLARIKKIMKs--DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
+..||..=|.||++. ..+-.+|++||..++++-+++|+.+-+.||...|+..+...|..+||.+..-+
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 567999999999996 45678999999999999999999999999999998888899999999986543
No 42
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.85 E-value=0.002 Score=55.08 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=53.5
Q ss_pred HHHHHHhC-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Q 019814 181 RIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 240 (335)
Q Consensus 181 RIKKIMKs-DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~ 240 (335)
-|.||+|. .||. .||.+|.-+|.--.+.+.+.|+.+|...+..+||+||+..||..||.
T Consensus 41 YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 41 YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 48888885 7774 59999999999999999999999999999999999999999999985
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.77 E-value=0.0022 Score=51.46 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=60.4
Q ss_pred ccCCCCCCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCHHHHHHHHhcC
Q 019814 170 NDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENK-RRTLQKNDIAAAITRT 242 (335)
Q Consensus 170 ~Dfk~~~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~K-RKTLqy~DIA~AV~~~ 242 (335)
..|+...|+-+.|||||..--+ ..++.+...+++-.+.+||.+|++.|.++..+.+ +.-|+.+||..|..+.
T Consensus 10 e~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 10 EMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 3455578999999999986432 4788999999999999999999999999987654 5689999999997653
No 44
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.69 E-value=0.0033 Score=53.49 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=53.5
Q ss_pred HHHHHHHhC-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Q 019814 180 ARIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 240 (335)
Q Consensus 180 ARIKKIMKs-DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~ 240 (335)
.-|.||+|. .|| ..||.+|.-+|.--.+.+.+.|+.+|...+..+||+||+..||..||.
T Consensus 37 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 37 IYIYTVLKQVHPD-TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 347888885 677 458999999999999999999999999999999999999999999985
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.49 E-value=0.0044 Score=55.14 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=54.3
Q ss_pred HHHHHHhC-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Q 019814 181 RIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 240 (335)
Q Consensus 181 RIKKIMKs-DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~ 240 (335)
-|.|++|. .||. .||.+|.-++.--+..+++.|+.+|...+..++|+||+..||..||+
T Consensus 8 yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 8 YIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 58899985 6774 49999999999999999999999999999999999999999999987
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.02 Score=53.22 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=60.2
Q ss_pred CCCCCChHH-HHHHHhCCc---chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCCc
Q 019814 173 KNHSLPLAR-IKKIMKADE---DVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 244 (335)
Q Consensus 173 k~~~LPLAR-IKKIMKsDp---DV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d~ 244 (335)
--..||..| |+.|...-. +--++.++|..++..|+|.|+-.|-+.+..+|...||.||..+||.-|-.-...
T Consensus 11 lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 11 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred cccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 346789988 567776522 246899999999999999999999999999999999999999999999665543
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.18 Score=40.78 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=48.1
Q ss_pred CChHHHHHHHhC--CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCccCHHHHHHH
Q 019814 177 LPLARIKKIMKA--DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENK-------RRTLQKNDIAAA 238 (335)
Q Consensus 177 LPLARIKKIMKs--DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~K-------RKTLqy~DIA~A 238 (335)
+|..-|-||++. ..+-.+|++||..+++|=+++||.+-..||....+..+ ...|+-.|+.+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEki 72 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERI 72 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHH
Confidence 677888899986 46678999999999999999999999999987655422 246777777654
No 48
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=93.70 E-value=0.16 Score=39.69 Aligned_cols=67 Identities=13% Similarity=0.298 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHhC-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 175 HSLPLARIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 175 ~~LPLARIKKIMKs-DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
..|.-.++..++|. ||. ..+..++--++..-++.||...+..|...|+..|..||..+||.-.++++
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 34677788888876 665 67788999999999999999999999999999999999999999888765
No 49
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=72.77 E-value=2 Score=31.59 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 200 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 200 pvLIAKAtELF----I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.-.+++.||=| |..|+.+|...|-..++..|+.+|+..|+.+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 45566677766 7789999999998889999999999999875
No 50
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=71.24 E-value=4 Score=34.41 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=51.7
Q ss_pred CCCChHH-HHHHHhC---CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccCHHHHHHHHhcCCcchh
Q 019814 175 HSLPLAR-IKKIMKA---DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEEN---KRRTLQKNDIAAAITRTDIFDF 247 (335)
Q Consensus 175 ~~LPLAR-IKKIMKs---DpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~---KRKTLqy~DIA~AV~~~d~FDF 247 (335)
..||..| |+.|.+. +.+.-+..++|..++-.|+|.|+-.|-+.+..+|... +-+.|+. |+...+...= =+|
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~-~iy~e~r~vl-~~~ 80 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISG-LIYEEVRAVL-KSF 80 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSS-CHHHHHHHHH-HHH
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhH-HHHHHHHHHH-HHH
Confidence 3578888 4556653 1223589999999999999999999999998887654 4456662 3333333221 267
Q ss_pred hhhcCC
Q 019814 248 LVDIVP 253 (335)
Q Consensus 248 L~DIVP 253 (335)
|.+|+-
T Consensus 81 l~~i~r 86 (121)
T 2ly8_A 81 LESVIR 86 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 51
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=60.33 E-value=3.8 Score=31.20 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 200 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 200 pvLIAKAtELF----I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.-.|++.|+=| |..|+.+|...|-...+..|+.+|+..|+.+
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 45566667766 7788888888888888899999999999875
No 52
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=56.87 E-value=14 Score=27.51 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 211 ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 211 I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
|..|+.+|...|-..++..|+.+|+..|+.+.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 45677778778878888999999999998864
No 53
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=53.25 E-value=15 Score=27.97 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=30.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 202 IFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 202 LIAKAtELF----I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.|++.||-| |..|+.+|...|-...+..|+.+|+..|+.+
T Consensus 37 ~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 37 KIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344445444 5668888888888888899999999999875
No 54
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=51.33 E-value=14 Score=27.23 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 211 ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 211 I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
|..|+.+|...|-...+..|+.+|+..|+.+.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 56788888888888888999999999998764
No 55
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=50.70 E-value=19 Score=31.48 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=44.0
Q ss_pred CChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHH
Q 019814 177 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 235 (335)
Q Consensus 177 LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DI 235 (335)
+++++++|+++.--+....-.++--+. .-.|-=+-+|...|...|+.|+|..|...||
T Consensus 3 m~~~~~e~lFR~aa~LdvdK~d~~r~~-d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAAGLDVDKNDLKRVS-DFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHHCCCCCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 678999999997666555555554444 4444456788888999999999999999886
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=49.79 E-value=42 Score=29.56 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=40.9
Q ss_pred hccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 193 RMISAEAPVIFARACE------MFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 193 ~~ISaEApvLIAKAtE------LFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
..++.++.-.+++.+. ..+..+...|+..|...++.+|+.+||..++...
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3577788888887777 5677888889988888888999999999998765
No 57
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=49.77 E-value=41 Score=30.00 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=45.7
Q ss_pred ChHHHHHHHhC--CcchhccCccHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 178 PLARIKKIMKA--DEDVRMISAEAPVIFARACE----MFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 178 PLARIKKIMKs--DpDV~~ISaEApvLIAKAtE----LFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
...-++.|++. ...-..++.++.-.+++.+. -.+..|..+|...|..++++.|+.+||..|+..
T Consensus 260 ~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 44555666652 11113477888888887776 245667778888888889999999999999875
No 58
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=48.94 E-value=22 Score=27.71 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019814 180 ARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTE 223 (335)
Q Consensus 180 ARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aq 223 (335)
.||..||+. -++..++.|+..+++-|||.=+..|.++-...|+
T Consensus 10 kri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~ 52 (75)
T 1h3o_A 10 RRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQ 52 (75)
T ss_dssp HHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 588888877 8889999999999999999988888777665554
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.60 E-value=10 Score=37.22 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=34.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 200 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 200 pvLIAKAtELF----I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.-.+++.|+-| |..|+.+|...|-+.+|..|+.+|+..|+.+
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 44566666655 7788999998898899999999999999864
No 60
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=46.41 E-value=37 Score=33.79 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=36.7
Q ss_pred ccCccHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 194 MISAEAPVIFARAC-------------EMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 194 ~ISaEApvLIAKAt-------------ELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
.++.+|...+.+.. .--+..|.+.|...|...++..|+.+||..|+...
T Consensus 314 ~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 314 HFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp CBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 56666666555532 34466778888888888999999999999999754
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=45.85 E-value=57 Score=28.66 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=34.2
Q ss_pred ccCccHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 194 MISAEAPVIFARACEM-------FILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 194 ~ISaEApvLIAKAtEL-------FI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.++.++.-++...+.- -+..+...|...|...+|.+|+..||..|+..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 5666666666554432 34566777777787888999999999988764
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.13 E-value=71 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=37.3
Q ss_pred ccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcCC
Q 019814 194 MISAEAPVIFARACE------MFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 243 (335)
Q Consensus 194 ~ISaEApvLIAKAtE------LFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~d 243 (335)
.++.++.-.++..+. ..+..+...++..|...++..|+.+||..|+....
T Consensus 218 ~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 218 VLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 466666666666665 34556788888888888888999999998887753
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=29.89 E-value=52 Score=28.24 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 211 ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 211 I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
|..|+.+|...|...++..|+.+|+..|+...
T Consensus 227 i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 227 LKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 55677888888888889999999999998754
No 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.69 E-value=65 Score=27.42 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 211 ILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 211 I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
|..++.+|...|...+++.|+.+|+..|+..
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4456677777777788899999999999875
No 65
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=24.07 E-value=38 Score=30.23 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=44.9
Q ss_pred CCChHHHHHHHhCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHH
Q 019814 176 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 235 (335)
Q Consensus 176 ~LPLARIKKIMKsDpDV~~ISaEApvLIAKAtELFI~eLT~rA~~~Aqe~KRKTLqy~DI 235 (335)
.+++++++||++.--+....-.++- -+..-.|-=+-+|...|...|+.|+|..|...||
T Consensus 26 vmg~~kferlFR~aagLDvdK~d~k-r~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDIDLTDETIE-LLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 6899999999997655555444444 4444445556788888999999999999999886
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=23.51 E-value=1.4e+02 Score=28.28 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=44.7
Q ss_pred ChHHHHHHHhCC--cchhccCccHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 178 PLARIKKIMKAD--EDVRMISAEAPVIFARAC-E---MFILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 178 PLARIKKIMKsD--pDV~~ISaEApvLIAKAt-E---LFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
...-+.+|++.- .+-..++.++.-++++.+ + .....|...|...|..+++..|+.+||..|+.-
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 445666666531 122347778877777766 3 245567788888888889999999999998754
No 67
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.68 E-value=78 Score=30.96 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=32.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 200 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 200 pvLIAKAtELF----I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.-.+++.|+-| |..|+.+|...|-+.+|..|+.+|+..|+.+
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 44455655543 6778888988888889999999999999864
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=21.58 E-value=85 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 019814 200 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAI 239 (335)
Q Consensus 200 pvLIAKAtELF----I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV 239 (335)
...++..++=| |..++.+|...|...+++.|+.+|+..|+
T Consensus 210 ~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 210 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 33455544433 44566677777777788899999999886
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=21.48 E-value=2e+02 Score=25.38 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=38.9
Q ss_pred ccCccHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 194 MISAEAPVIFARAC------------EMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 194 ~ISaEApvLIAKAt------------ELFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
.++.++.-.++..+ =.++..+...|+..|...++..|+.+||..++...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 57777877777777 24467788889988888888999999999887764
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.58 E-value=85 Score=31.21 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Q 019814 200 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 241 (335)
Q Consensus 200 pvLIAKAtELF----I~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~ 241 (335)
.-.+++.|+-| |..|+.+|...|-..+|..|+.+|+..|+.+
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 34455555544 6778888988888889999999999999864
No 71
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=20.29 E-value=2.1e+02 Score=23.05 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=25.7
Q ss_pred cCccHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Q 019814 195 ISAEAPVIFARACE---MFILELTLRSWNHTEENKRRTLQKNDIAAAIT 240 (335)
Q Consensus 195 ISaEApvLIAKAtE---LFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~ 240 (335)
++.++.-.+++.++ --+..+..++...|...+ +.|+.+||..++.
T Consensus 194 ~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 194 LPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 55555555555443 122334444555554344 4699999999875
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.05 E-value=2.6e+02 Score=24.69 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=29.2
Q ss_pred cCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhcC
Q 019814 195 ISAEAPVIFARACE------MFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 242 (335)
Q Consensus 195 ISaEApvLIAKAtE------LFI~eLT~rA~~~Aqe~KRKTLqy~DIA~AV~~~ 242 (335)
++.++.-.+++.+. ..+..+...|+..|. ++.+|+.+||..++...
T Consensus 219 ~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 219 YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 44555555555544 124456666777665 56789999998887765
Done!