Query 019817
Match_columns 335
No_of_seqs 312 out of 1473
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 3.6E-56 1.2E-60 432.1 27.2 320 1-334 8-368 (368)
2 2lbc_A Ubiquitin carboxyl-term 99.8 2.1E-19 7.3E-24 149.5 11.2 117 154-334 4-122 (126)
3 3m62_B UV excision repair prot 99.8 3.1E-19 1.1E-23 144.1 8.6 76 1-79 2-77 (106)
4 1uel_A HHR23B, UV excision rep 99.8 4.6E-18 1.6E-22 134.4 12.3 77 1-80 1-80 (95)
5 4dwf_A HLA-B-associated transc 99.8 2.1E-18 7.1E-23 134.5 9.8 74 1-78 6-79 (90)
6 3phx_B Ubiquitin-like protein 99.8 3.4E-18 1.2E-22 130.0 10.5 74 1-77 5-78 (79)
7 4fbj_B NEDD8; effector-HOST ta 99.8 3.5E-18 1.2E-22 133.2 10.4 78 1-81 1-78 (88)
8 1dv0_A DNA repair protein HHR2 99.8 1.9E-19 6.4E-24 124.3 2.7 47 288-334 1-47 (47)
9 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 9.1E-18 3.1E-22 132.3 11.0 77 1-80 2-78 (96)
10 2wyq_A HHR23A, UV excision rep 99.7 8.3E-18 2.8E-22 129.4 10.4 75 1-78 6-83 (85)
11 2kk8_A Uncharacterized protein 99.7 6.1E-18 2.1E-22 130.9 9.6 72 1-75 11-83 (84)
12 3v6c_B Ubiquitin; structural g 99.7 7.8E-18 2.7E-22 131.8 10.0 74 1-77 18-91 (91)
13 3plu_A Ubiquitin-like modifier 99.7 8.3E-18 2.8E-22 131.8 9.4 70 1-73 22-91 (93)
14 4a20_A Ubiquitin-like protein 99.7 6.6E-18 2.2E-22 134.5 8.8 74 1-77 20-97 (98)
15 2qsf_X RAD23, UV excision repa 99.7 2.6E-18 8.8E-23 148.8 6.4 50 283-332 122-171 (171)
16 1wx7_A Ubiquilin 3; ubiquitin- 99.7 2.4E-17 8.3E-22 132.7 11.4 75 1-79 18-92 (106)
17 2lxa_A Ubiquitin-like protein 99.7 6.8E-18 2.3E-22 131.6 7.3 73 1-76 2-78 (87)
18 1ndd_A NEDD8, protein (ubiquit 99.7 3.3E-17 1.1E-21 122.8 10.8 74 1-77 1-74 (76)
19 4hcn_B Polyubiquitin, ubiquiti 99.7 2.4E-17 8.1E-22 131.0 10.3 75 1-78 23-97 (98)
20 1ttn_A DC-UBP, dendritic cell- 99.7 2E-17 6.8E-22 133.4 9.7 76 1-79 24-99 (106)
21 2faz_A Ubiquitin-like containi 99.7 2.6E-17 9E-22 124.6 9.8 73 1-76 3-77 (78)
22 3dbh_I NEDD8; cell cycle, acti 99.7 2E-17 7E-22 127.9 9.2 74 1-77 13-86 (88)
23 3a9j_A Ubiquitin; protein comp 99.7 5.3E-17 1.8E-21 121.6 11.0 74 1-77 1-74 (76)
24 1uh6_A Ubiquitin-like 5; beta- 99.7 1.7E-17 5.7E-22 132.3 8.1 70 1-73 29-98 (100)
25 4eew_A Large proline-rich prot 99.7 3.4E-17 1.2E-21 127.0 9.5 71 1-75 18-88 (88)
26 1wy8_A NP95-like ring finger p 99.7 7.5E-17 2.6E-21 125.3 11.4 76 1-79 8-85 (89)
27 2dzi_A Ubiquitin-like protein 99.7 4.2E-17 1.4E-21 124.1 9.7 73 1-76 8-80 (81)
28 3n3k_B Ubiquitin; hydrolase, p 99.7 3.7E-17 1.3E-21 125.5 9.5 75 1-78 4-78 (85)
29 3mtn_B UBA80, ubcep1, ubiquiti 99.7 6.3E-17 2.2E-21 124.1 10.1 75 1-78 4-78 (85)
30 1wgd_A Homocysteine-responsive 99.7 6.2E-17 2.1E-21 127.2 10.1 76 1-79 8-89 (93)
31 2hj8_A Interferon-induced 17 k 99.7 3.7E-17 1.3E-21 127.3 8.7 75 1-78 5-79 (88)
32 2uyz_B Small ubiquitin-related 99.7 4E-17 1.4E-21 124.0 8.7 74 1-77 4-77 (79)
33 1sif_A Ubiquitin; hydrophobic 99.7 7.4E-17 2.5E-21 125.6 10.2 75 1-78 10-84 (88)
34 4ae4_A Ubiquitin-associated pr 99.7 1.2E-17 4.2E-22 136.9 6.0 108 151-330 6-115 (118)
35 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 8E-17 2.8E-21 124.5 10.3 75 1-78 8-82 (87)
36 1wia_A Hypothetical ubiquitin- 99.7 9.1E-17 3.1E-21 126.7 10.2 73 1-79 8-81 (95)
37 2kan_A Uncharacterized protein 99.7 1.2E-16 4E-21 126.2 10.7 75 1-79 16-91 (94)
38 1v2y_A 3300001G02RIK protein; 99.7 3.7E-17 1.3E-21 131.6 7.9 76 1-79 8-99 (105)
39 1v5o_A 1700011N24RIK protein; 99.7 1.2E-16 4.1E-21 127.9 10.5 76 1-79 8-88 (102)
40 2bwf_A Ubiquitin-like protein 99.7 1.4E-16 4.8E-21 120.0 10.1 71 1-75 5-75 (77)
41 1wyw_B Ubiquitin-like protein 99.7 7.7E-17 2.6E-21 127.9 9.0 75 1-78 22-96 (97)
42 3vdz_A Ubiquitin-40S ribosomal 99.7 1.6E-16 5.3E-21 129.2 10.3 75 1-78 36-110 (111)
43 1yx5_B Ubiquitin; proteasome, 99.7 2.5E-16 8.5E-21 124.8 11.1 75 1-78 1-75 (98)
44 1wx8_A Riken cDNA 4931431F19; 99.7 8.7E-17 3E-21 126.9 8.0 75 1-79 18-92 (96)
45 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.4E-16 8.1E-21 126.1 10.4 74 1-78 26-99 (101)
46 1wju_A NEDD8 ultimate buster-1 99.7 2E-16 7E-21 126.0 9.8 71 2-75 17-91 (100)
47 1yqb_A Ubiquilin 3; structural 99.7 2E-16 6.9E-21 126.3 9.5 75 1-79 23-97 (100)
48 1j8c_A Ubiquitin-like protein 99.7 2.8E-16 9.5E-21 130.5 10.3 75 1-79 33-107 (125)
49 1wgh_A Ubiquitin-like 3, HCG-1 99.7 5.2E-16 1.8E-20 127.1 11.7 77 1-77 17-100 (116)
50 3b1l_X E3 ubiquitin-protein li 99.5 7.6E-18 2.6E-22 126.9 0.0 74 1-77 1-74 (76)
51 2l7r_A Ubiquitin-like protein 99.7 3.6E-16 1.2E-20 123.0 9.6 72 1-77 20-91 (93)
52 1wgg_A Ubiquitin carboxyl-term 99.6 2.8E-16 9.6E-21 124.5 8.5 72 1-77 8-80 (96)
53 3l0w_B Monoubiquitinated proli 99.6 8.3E-16 2.8E-20 134.0 11.8 77 1-80 1-77 (169)
54 1x1m_A Ubiquitin-like protein 99.6 6.3E-16 2.2E-20 124.8 10.2 74 1-77 13-101 (107)
55 2ojr_A Ubiquitin; lanthide-bin 99.6 1.2E-15 4.2E-20 123.8 10.9 74 1-77 36-109 (111)
56 2gow_A HCG-1 protein, ubiquiti 99.6 6.9E-16 2.4E-20 128.0 9.0 74 1-77 18-101 (125)
57 1wxv_A BAG-family molecular ch 99.6 1.7E-15 5.8E-20 118.6 10.2 73 1-77 8-86 (92)
58 3m63_B Ubiquitin domain-contai 99.6 3E-16 1E-20 125.5 6.0 72 1-76 29-100 (101)
59 1v5t_A 8430435I17RIK protein; 99.6 1.6E-15 5.4E-20 118.6 9.6 72 1-76 8-83 (90)
60 4ajy_B Transcription elongatio 99.6 1E-15 3.5E-20 125.0 8.6 73 1-76 1-81 (118)
61 2kdb_A Homocysteine-responsive 99.6 6.9E-16 2.4E-20 123.0 7.4 71 1-73 24-99 (99)
62 2fnj_B Transcription elongatio 99.6 9.7E-16 3.3E-20 125.5 8.4 72 1-75 1-80 (118)
63 2kdi_A Ubiquitin, vacuolar pro 99.6 2.8E-15 9.7E-20 122.4 11.2 76 1-79 10-85 (114)
64 1se9_A Ubiquitin family; ubiqu 99.6 1.6E-15 5.6E-20 125.5 9.7 79 1-79 17-106 (126)
65 3rt3_B Ubiquitin-like protein 99.6 2.2E-15 7.6E-20 129.2 10.5 75 1-78 82-156 (159)
66 1we6_A Splicing factor, putati 99.6 1.7E-15 5.7E-20 123.0 9.0 76 1-79 28-107 (111)
67 2daf_A FLJ35834 protein; hypot 99.6 3.7E-15 1.3E-19 121.2 9.7 74 2-78 17-91 (118)
68 2kd0_A LRR repeats and ubiquit 99.6 4.4E-15 1.5E-19 114.9 9.7 70 3-75 14-83 (85)
69 1v86_A DNA segment, CHR 7, way 99.6 1.6E-15 5.5E-20 119.8 7.4 71 1-76 18-88 (95)
70 3q3f_A Ribonuclease/ubiquitin 99.6 2.8E-15 9.4E-20 132.7 9.5 76 1-79 106-181 (189)
71 3u30_A Ubiquitin, linear DI-ub 99.6 4.7E-15 1.6E-19 129.0 10.5 74 1-77 21-94 (172)
72 4dbg_A Ranbp-type and C3HC4-ty 99.6 5.9E-15 2E-19 118.5 9.8 73 1-76 25-100 (105)
73 3rt3_B Ubiquitin-like protein 99.6 6E-15 2E-19 126.5 10.4 72 1-75 3-76 (159)
74 3u5e_m 60S ribosomal protein L 99.6 2.4E-16 8.2E-21 131.2 0.0 76 1-79 1-76 (128)
75 3b08_A Polyubiquitin-C, ubiqui 99.6 1.8E-14 6E-19 121.9 11.1 73 1-76 1-73 (152)
76 1ify_A HHR23A, UV excision rep 99.5 3.3E-15 1.1E-19 103.9 4.9 49 146-197 1-49 (49)
77 1we7_A SF3A1 protein; structur 99.5 1.8E-14 6.3E-19 117.6 10.1 76 1-79 26-111 (115)
78 3u5c_f 40S ribosomal protein S 99.5 6.6E-16 2.2E-20 132.4 1.1 78 1-81 1-78 (152)
79 3b08_A Polyubiquitin-C, ubiqui 99.5 2.6E-14 9E-19 120.8 10.6 75 1-78 77-151 (152)
80 3u30_A Ubiquitin, linear DI-ub 99.5 1.5E-14 5.3E-19 125.8 8.9 75 1-78 97-171 (172)
81 2dzj_A Synaptic glycoprotein S 99.5 1.6E-14 5.4E-19 112.7 6.5 69 1-72 11-85 (88)
82 2dzm_A FAS-associated factor 1 99.5 3.9E-14 1.3E-18 113.0 7.3 72 1-76 9-82 (100)
83 3ai5_A Yeast enhanced green fl 99.5 1.2E-13 4.2E-18 130.5 9.8 73 1-76 234-306 (307)
84 4b6w_A Tubulin-specific chaper 99.5 7.2E-14 2.5E-18 108.5 6.7 73 2-77 4-85 (86)
85 1wf9_A NPL4 family protein; be 99.5 1.2E-13 4.1E-18 111.4 7.8 71 1-75 8-94 (107)
86 1wgn_A UBAP1, ubiquitin associ 99.5 4.4E-14 1.5E-18 100.6 4.3 48 286-333 14-61 (63)
87 2kjr_A CG11242; UBL, ubiquitin 99.4 3.3E-13 1.1E-17 106.7 9.4 70 1-73 16-93 (95)
88 1wiv_A UBP14, ubiquitin-specif 99.4 3.2E-14 1.1E-18 107.0 3.0 45 290-334 28-72 (73)
89 2kj6_A Tubulin folding cofacto 99.4 5.7E-13 2E-17 105.7 8.7 71 2-75 16-95 (97)
90 1v6e_A Cytoskeleton-associated 99.4 8.2E-13 2.8E-17 104.1 8.6 73 1-76 8-88 (95)
91 2kzr_A Ubiquitin thioesterase 99.4 8.7E-13 3E-17 102.0 7.4 71 1-75 1-77 (86)
92 2g3q_A Protein YBL047C; endocy 99.4 6E-13 2.1E-17 89.8 5.2 39 291-329 4-42 (43)
93 2xzm_9 RPS31E; ribosome, trans 99.4 6.5E-14 2.2E-18 123.5 0.3 71 1-79 1-71 (189)
94 2io1_B Small ubiquitin-related 99.3 2.6E-12 8.8E-17 101.3 8.8 76 1-79 8-83 (94)
95 1t0y_A Tubulin folding cofacto 99.3 5.8E-12 2E-16 103.8 9.3 74 1-77 7-88 (122)
96 1wm3_A Ubiquitin-like protein 99.3 9.5E-12 3.2E-16 93.1 9.4 71 1-74 2-72 (72)
97 1wji_A Tudor domain containing 99.3 2.6E-12 8.9E-17 93.8 5.7 44 290-333 8-51 (63)
98 2io0_B Small ubiquitin-related 99.3 1.4E-11 4.8E-16 96.5 9.5 75 1-78 6-80 (91)
99 3shq_A UBLCP1; phosphatase, hy 99.3 3.8E-12 1.3E-16 121.4 7.5 73 1-77 6-81 (320)
100 2g3q_A Protein YBL047C; endocy 99.3 4.8E-12 1.6E-16 85.4 5.9 40 153-195 4-43 (43)
101 2cpw_A CBL-interacting protein 99.3 2.7E-12 9.3E-17 94.0 4.2 44 291-334 19-63 (64)
102 3a4r_A Nfatc2-interacting prot 99.3 2.9E-11 1E-15 92.1 10.0 70 1-73 8-78 (79)
103 2d07_B Ubiquitin-like protein 99.2 3.1E-11 1E-15 94.9 9.2 74 1-77 18-91 (93)
104 1vej_A Riken cDNA 4931431F19; 99.2 2.2E-11 7.4E-16 91.4 7.9 46 150-198 26-72 (74)
105 2crn_A Ubash3A protein; compac 99.2 4.8E-12 1.6E-16 92.6 4.2 46 150-198 6-52 (64)
106 1wz0_A Ubiquitin-like protein 99.2 3.3E-11 1.1E-15 96.6 9.1 75 1-78 25-99 (104)
107 1vg5_A RSGI RUH-014, rhomboid 99.2 1.2E-11 4.1E-16 92.7 5.9 47 286-332 24-70 (73)
108 1whc_A RSGI RUH-027, UBA/UBX 3 99.2 6.5E-12 2.2E-16 92.0 4.3 44 291-334 9-53 (64)
109 2dag_A Ubiquitin carboxyl-term 99.2 1E-11 3.5E-16 93.5 5.4 45 290-334 8-53 (74)
110 2dai_A Ubadc1, ubiquitin assoc 99.2 1.1E-11 3.6E-16 95.4 5.2 45 290-334 28-72 (83)
111 2crn_A Ubash3A protein; compac 99.2 7.3E-12 2.5E-16 91.7 3.9 44 291-334 9-53 (64)
112 2dkl_A Trinucleotide repeat co 99.2 1.6E-11 5.6E-16 94.7 5.7 44 291-334 21-64 (85)
113 2dak_A Ubiquitin carboxyl-term 99.2 8.4E-12 2.9E-16 91.1 3.6 46 289-334 7-52 (63)
114 1wgn_A UBAP1, ubiquitin associ 99.2 1.6E-11 5.5E-16 87.4 4.9 42 151-195 17-58 (63)
115 1vg5_A RSGI RUH-014, rhomboid 99.2 2.8E-11 9.5E-16 90.6 6.1 43 151-196 27-69 (73)
116 2knz_A Ubiquilin-4; cytoplasm, 99.2 3.7E-11 1.3E-15 84.7 6.2 43 151-196 9-52 (53)
117 1wji_A Tudor domain containing 99.2 2.8E-11 9.7E-16 88.2 5.8 43 153-198 9-51 (63)
118 1z96_A DNA-damage, UBA-domain 99.2 3.3E-11 1.1E-15 79.7 5.4 39 289-327 2-40 (40)
119 1ify_A HHR23A, UV excision rep 99.2 2.1E-11 7.3E-16 84.5 4.5 42 289-330 6-47 (49)
120 2dak_A Ubiquitin carboxyl-term 99.2 1.4E-11 4.9E-16 89.9 3.6 44 152-198 8-51 (63)
121 2k8h_A Small ubiquitin protein 99.2 6E-11 2.1E-15 96.0 7.7 75 1-78 27-101 (110)
122 2dag_A Ubiquitin carboxyl-term 99.2 3.8E-11 1.3E-15 90.4 5.8 44 153-199 9-53 (74)
123 2eke_C Ubiquitin-like protein 99.1 1E-10 3.6E-15 94.0 8.5 73 1-77 32-104 (106)
124 2ekk_A UBA domain from E3 ubiq 99.1 2.6E-11 9E-16 83.3 4.2 40 290-330 8-47 (47)
125 2jy5_A Ubiquilin-1; UBA, alter 99.1 7.9E-11 2.7E-15 82.6 6.2 41 151-194 10-51 (52)
126 1whc_A RSGI RUH-027, UBA/UBX 3 99.1 3.3E-11 1.1E-15 88.2 4.2 42 154-198 10-52 (64)
127 2jy5_A Ubiquilin-1; UBA, alter 99.1 6.8E-11 2.3E-15 83.0 5.6 39 292-330 13-52 (52)
128 2bwb_A Ubiquitin-like protein 99.1 9.1E-11 3.1E-15 80.2 5.6 40 152-194 6-46 (46)
129 2cpw_A CBL-interacting protein 99.1 4.8E-11 1.6E-15 87.3 4.5 41 154-197 20-61 (64)
130 3ihp_A Ubiquitin carboxyl-term 99.1 1.1E-10 3.8E-15 124.4 8.8 109 153-332 652-761 (854)
131 1vek_A UBP14, ubiquitin-specif 99.1 8.6E-11 3E-15 90.5 5.4 45 290-334 28-73 (84)
132 1veg_A NEDD8 ultimate buster-1 99.1 1.3E-10 4.6E-15 88.8 5.9 43 291-333 29-71 (83)
133 1wjn_A Tubulin-folding protein 99.1 3.4E-10 1.2E-14 89.3 8.2 72 2-76 11-93 (97)
134 2dai_A Ubadc1, ubiquitin assoc 99.1 1.3E-10 4.4E-15 89.3 5.4 43 153-198 29-71 (83)
135 2knz_A Ubiquilin-4; cytoplasm, 99.1 1.5E-10 5.2E-15 81.5 5.3 39 292-330 12-51 (53)
136 2ekk_A UBA domain from E3 ubiq 99.1 1.3E-10 4.6E-15 79.8 4.6 38 153-194 9-46 (47)
137 1vek_A UBP14, ubiquitin-specif 99.0 1.9E-10 6.4E-15 88.7 5.7 43 153-198 29-72 (84)
138 1z96_A DNA-damage, UBA-domain 99.0 2.2E-10 7.4E-15 75.8 5.2 39 151-192 2-40 (40)
139 1wiv_A UBP14, ubiquitin-specif 99.0 2.5E-10 8.4E-15 85.7 6.0 42 153-197 29-70 (73)
140 2ooa_A E3 ubiquitin-protein li 99.0 2.5E-10 8.4E-15 78.6 5.3 37 293-329 13-49 (52)
141 1veg_A NEDD8 ultimate buster-1 99.0 2.9E-10 1E-14 86.9 6.3 39 153-194 29-67 (83)
142 2dna_A Unnamed protein product 99.0 2.8E-10 9.5E-15 83.5 5.7 45 151-198 17-62 (67)
143 1wr1_B Ubiquitin-like protein 99.0 4.2E-10 1.4E-14 80.6 5.5 41 151-194 15-56 (58)
144 1dv0_A DNA repair protein HHR2 99.0 1.6E-10 5.3E-15 79.4 1.7 44 151-197 2-45 (47)
145 2d9s_A CBL E3 ubiquitin protei 98.9 6.9E-10 2.4E-14 76.8 4.8 38 293-330 11-48 (53)
146 2bwb_A Ubiquitin-like protein 98.9 1.3E-09 4.3E-14 74.5 5.6 38 292-329 8-46 (46)
147 2dah_A Ubiquilin-3; UBA domain 98.9 1.8E-09 6E-14 76.3 5.3 42 292-333 10-52 (54)
148 3kyd_D Small ubiquitin-related 98.9 8.7E-09 3E-13 83.7 9.9 73 1-76 41-113 (115)
149 1vej_A Riken cDNA 4931431F19; 98.9 2.3E-09 7.8E-14 80.3 5.8 42 292-333 30-72 (74)
150 2dkl_A Trinucleotide repeat co 98.9 3.2E-09 1.1E-13 81.8 6.7 41 154-197 22-62 (85)
151 1wr1_B Ubiquitin-like protein 98.9 2E-09 7E-14 77.0 5.0 39 292-330 18-57 (58)
152 2dah_A Ubiquilin-3; UBA domain 98.9 2.4E-09 8.3E-14 75.6 5.3 41 152-195 8-49 (54)
153 2juj_A E3 ubiquitin-protein li 98.8 2.7E-09 9.2E-14 73.9 4.5 40 291-330 7-46 (56)
154 2dna_A Unnamed protein product 98.8 3.9E-09 1.3E-13 77.4 5.5 42 292-333 20-62 (67)
155 2lbc_A Ubiquitin carboxyl-term 98.8 6.6E-09 2.3E-13 85.9 6.2 41 153-196 78-118 (126)
156 2oo9_A E3 ubiquitin-protein li 98.7 1.6E-08 5.6E-13 67.5 5.2 39 292-330 5-43 (46)
157 4ae4_A Ubiquitin-associated pr 98.7 2E-08 7E-13 82.0 5.3 45 286-330 3-47 (118)
158 3pge_A SUMO-modified prolifera 98.6 9.4E-08 3.2E-12 84.9 9.7 76 1-80 30-105 (200)
159 2ooa_A E3 ubiquitin-protein li 98.6 4.5E-08 1.5E-12 67.4 5.5 37 154-193 12-48 (52)
160 2cwb_A Chimera of immunoglobul 98.6 4.4E-08 1.5E-12 78.5 5.9 42 151-195 64-106 (108)
161 3tix_A Ubiquitin-like protein 98.6 7.4E-08 2.5E-12 84.4 7.3 75 1-79 58-132 (207)
162 2pjh_A Protein NPL4, nuclear p 98.6 4.3E-08 1.5E-12 74.7 4.5 69 1-73 5-78 (80)
163 2oo9_A E3 ubiquitin-protein li 98.6 9.6E-08 3.3E-12 63.8 5.5 42 150-194 1-42 (46)
164 2d9s_A CBL E3 ubiquitin protei 98.5 1E-07 3.5E-12 65.9 5.3 39 153-194 9-47 (53)
165 3goe_A DNA repair protein RAD6 98.5 6.5E-07 2.2E-11 67.1 9.6 70 2-74 11-81 (82)
166 2juj_A E3 ubiquitin-protein li 98.5 1.5E-07 5.1E-12 65.2 4.6 39 153-194 7-45 (56)
167 2cwb_A Chimera of immunoglobul 98.4 1.9E-07 6.4E-12 74.9 5.4 40 292-331 67-107 (108)
168 2jxx_A Nfatc2-interacting prot 98.3 2.3E-06 7.7E-11 67.5 9.3 70 1-73 26-96 (97)
169 1oqy_A HHR23A, UV excision rep 98.3 2.2E-07 7.5E-12 89.9 3.9 44 290-333 167-210 (368)
170 3v7o_A Minor nucleoprotein VP3 98.3 7.9E-08 2.7E-12 85.4 0.0 74 1-78 22-95 (227)
171 1wj7_A Hypothetical protein (R 98.2 1.5E-06 5.1E-11 68.8 6.0 45 151-198 37-82 (104)
172 2cos_A Serine/threonine protei 98.2 1.3E-06 4.3E-11 60.6 4.9 38 153-193 9-47 (54)
173 1wj7_A Hypothetical protein (R 98.2 1.4E-06 4.9E-11 68.9 5.5 43 290-332 38-81 (104)
174 3k9o_A Ubiquitin-conjugating e 98.2 1.2E-06 4.1E-11 77.9 5.0 40 290-329 162-201 (201)
175 2l76_A Nfatc2-interacting prot 98.2 1E-05 3.5E-10 63.1 9.4 72 1-76 22-93 (95)
176 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 7.6E-06 2.6E-10 57.2 5.3 42 150-194 6-48 (54)
177 3k9o_A Ubiquitin-conjugating e 98.0 5.2E-06 1.8E-10 73.8 5.3 44 148-194 158-201 (201)
178 3uf8_A Ubiquitin-like protein 98.0 2E-05 6.8E-10 70.4 8.3 73 2-78 23-95 (209)
179 4efo_A Serine/threonine-protei 97.9 6.1E-05 2.1E-09 58.8 8.8 69 3-74 15-87 (94)
180 2cp8_A NEXT to BRCA1 gene 1 pr 97.9 1.2E-05 4.2E-10 56.1 4.2 45 289-333 5-52 (54)
181 2al3_A TUG long isoform; TUG U 97.9 7.1E-05 2.4E-09 57.8 8.9 74 1-77 10-83 (90)
182 2bps_A YUKD protein; ubiquitin 97.8 4.4E-05 1.5E-09 58.0 6.6 71 2-72 6-80 (81)
183 2qsf_X RAD23, UV excision repa 97.8 1.9E-05 6.5E-10 68.2 5.1 42 150-194 127-168 (171)
184 3ix6_A TS, tsase, thymidylate 97.8 3E-06 1E-10 81.4 0.0 74 1-78 22-95 (360)
185 2kc2_A Talin-1, F1; FERM, adhe 97.8 4.6E-05 1.6E-09 62.8 7.0 69 2-73 13-120 (128)
186 3e46_A Ubiquitin-conjugating e 97.7 2.7E-05 9.4E-10 71.5 5.3 40 290-329 214-253 (253)
187 4da1_A Protein phosphatase 1K, 97.5 1.3E-05 4.4E-10 77.9 0.0 74 2-79 32-105 (389)
188 3qx1_A FAS-associated factor 1 97.3 0.00091 3.1E-08 50.7 8.5 68 2-73 9-81 (84)
189 2dzk_A UBX domain-containing p 97.2 0.0048 1.6E-07 49.2 11.2 71 2-75 15-90 (109)
190 2cos_A Serine/threonine protei 97.1 0.00059 2E-08 47.2 4.4 42 289-330 7-49 (54)
191 3e46_A Ubiquitin-conjugating e 97.1 0.00051 1.7E-08 63.0 5.4 44 147-193 209-252 (253)
192 1wgl_A TOLL-interacting protei 96.8 0.0014 4.8E-08 46.6 4.6 44 290-333 8-53 (59)
193 1wj4_A KIAA0794 protein; UBX d 96.7 0.0058 2E-07 49.9 8.0 69 2-74 45-118 (124)
194 2cp9_A EF-TS, EF-TSMT, elongat 96.6 0.0036 1.2E-07 45.2 5.2 36 155-193 11-47 (64)
195 2cr5_A Reproduction 8; UBX dom 96.3 0.03 1E-06 44.4 10.2 69 2-74 25-97 (109)
196 3ihp_A Ubiquitin carboxyl-term 96.2 0.0032 1.1E-07 67.1 4.7 43 151-196 718-760 (854)
197 4dbg_B Ring finger protein 31; 96.2 0.016 5.4E-07 49.0 7.9 36 292-327 103-139 (162)
198 1s3s_G P47 protein; AAA ATPase 96.1 0.021 7.2E-07 46.7 8.0 67 2-70 54-123 (127)
199 1wgl_A TOLL-interacting protei 95.6 0.013 4.4E-07 41.6 4.2 41 151-194 7-49 (59)
200 2pwq_A Ubiquitin conjugating e 95.5 0.0023 7.8E-08 57.3 0.0 38 292-329 178-215 (216)
201 2l32_A Small archaeal modifier 95.4 0.052 1.8E-06 40.1 7.0 60 1-73 1-60 (74)
202 1otr_A Protein CUE2; protein-p 95.3 0.024 8.3E-07 38.6 4.7 39 153-194 4-44 (49)
203 2daj_A KIAA0977 protein, COBL- 95.2 0.084 2.9E-06 40.0 7.6 70 2-77 12-84 (91)
204 4e71_A Plexin-B2, MM1; transme 95.1 0.15 5.1E-06 40.7 9.2 64 10-74 23-109 (111)
205 2cp9_A EF-TS, EF-TSMT, elongat 94.7 0.042 1.4E-06 39.6 4.7 37 293-329 11-48 (64)
206 2dhy_A CUE domain-containing p 94.6 0.046 1.6E-06 39.7 4.8 41 290-330 17-59 (67)
207 2r2o_A Plexin-B1; effector dom 94.6 0.15 5E-06 42.2 8.4 65 11-76 41-129 (138)
208 2dhy_A CUE domain-containing p 94.5 0.079 2.7E-06 38.5 5.8 45 149-194 14-58 (67)
209 2dam_A ETEA protein; KIAA0887, 94.4 0.069 2.4E-06 38.8 5.4 47 285-331 12-60 (67)
210 2di0_A Activating signal coint 94.1 0.13 4.4E-06 37.7 6.2 50 148-198 8-58 (71)
211 1otr_A Protein CUE2; protein-p 94.0 0.073 2.5E-06 36.2 4.5 41 291-331 4-46 (49)
212 2pwq_A Ubiquitin conjugating e 94.0 0.0097 3.3E-07 53.2 0.0 40 152-194 176-215 (216)
213 2dal_A Protein KIAA0794; FAS a 93.8 0.087 3E-06 37.5 4.9 46 286-331 10-56 (62)
214 4a3p_A Ubiquitin carboxyl-term 93.8 0.23 7.7E-06 44.1 8.6 61 13-76 142-209 (217)
215 1ryj_A Unknown; beta/alpha pro 93.7 0.38 1.3E-05 34.7 8.3 61 1-74 5-65 (70)
216 1tte_A Ubiquitin-conjugating e 93.6 0.039 1.3E-06 49.2 3.3 34 287-320 165-198 (215)
217 1aip_C EF-TS, elongation facto 93.5 0.098 3.3E-06 45.9 5.4 37 154-193 4-41 (196)
218 1v92_A NSFL1 cofactor P47; 3-h 93.4 0.1 3.5E-06 34.5 4.4 40 291-330 5-45 (46)
219 3ivf_A Talin-1; FERM domain, c 93.3 0.27 9.3E-06 46.8 8.9 72 2-74 5-83 (371)
220 1vjk_A Molybdopterin convertin 93.3 0.59 2E-05 35.9 9.3 68 1-73 10-92 (98)
221 1xb2_B EF-TS, elongation facto 93.3 0.085 2.9E-06 49.1 5.0 37 154-193 5-42 (291)
222 3jyu_A Ubiquitin carboxyl-term 93.0 0.26 8.7E-06 44.2 7.8 61 13-76 154-221 (231)
223 3h6n_A Plexin-D1; structural g 92.9 0.65 2.2E-05 37.8 9.1 66 9-75 15-104 (127)
224 1q02_A Sequestosome 1; helical 92.3 0.087 3E-06 36.1 2.7 38 151-191 8-47 (52)
225 3rpf_C Molybdopterin convertin 92.2 0.46 1.6E-05 34.5 6.9 65 1-73 1-68 (74)
226 4e74_A Plexin-A4; RBD, structu 91.6 0.7 2.4E-05 37.1 7.8 65 11-76 27-115 (117)
227 1oey_A P67-PHOX, neutrophil cy 90.5 0.5 1.7E-05 35.7 5.6 45 1-50 6-50 (83)
228 3po0_A Small archaeal modifier 89.6 2.5 8.4E-05 31.5 9.0 58 11-73 18-83 (89)
229 1wgk_A Riken cDNA 2900073H19 p 88.4 0.61 2.1E-05 37.2 5.0 69 1-74 12-103 (114)
230 3dwg_C 9.5 kDa culture filtrat 88.0 1.7 5.6E-05 32.8 7.1 71 1-73 1-87 (93)
231 1tyg_B YJBS; alpha beta barrel 87.5 1.1 3.9E-05 33.9 5.8 57 8-74 25-82 (87)
232 4fp9_B Mterf domain-containing 87.4 0.94 3.2E-05 42.9 6.4 40 151-193 44-87 (335)
233 2juo_A GA-binding protein alph 87.2 2 6.7E-05 32.4 6.7 60 14-76 6-65 (89)
234 2dzl_A Protein FAM100B; UBA-li 86.7 0.99 3.4E-05 32.4 4.8 41 291-331 17-58 (66)
235 1f0z_A THis protein; ubiquitin 86.5 1.2 4.3E-05 31.4 5.3 60 1-73 1-60 (66)
236 3kuz_A Plexin-C1; structural g 86.4 3.1 0.00011 33.7 8.0 61 11-74 39-125 (126)
237 1q02_A Sequestosome 1; helical 85.8 0.75 2.6E-05 31.4 3.4 36 292-327 11-48 (52)
238 2kl0_A Putative thiamin biosyn 85.7 1 3.4E-05 32.9 4.5 60 1-74 1-60 (73)
239 1ip9_A BEM1 protein; ubiquitin 85.4 1.3 4.3E-05 33.5 4.9 41 2-48 14-54 (85)
240 3hm6_X Plexin-B1; structural g 84.7 3.2 0.00011 42.2 9.0 65 11-76 274-362 (644)
241 2di0_A Activating signal coint 84.5 1.6 5.5E-05 31.8 5.0 39 292-330 14-54 (71)
242 2k5p_A THis protein, thiamine- 83.4 1.1 3.9E-05 33.1 3.9 63 1-74 1-64 (78)
243 2qjl_A URM1, ubiquitin-related 83.3 2.1 7.3E-05 32.7 5.7 35 1-35 2-46 (99)
244 1ufz_A Hypothetical protein BA 83.2 2 6.9E-05 32.2 5.2 41 154-194 35-75 (83)
245 2k9x_A Tburm1, uncharacterized 83.2 0.43 1.5E-05 37.9 1.6 69 1-74 5-97 (110)
246 1ef1_A Moesin; membrane, FERM 83.1 5.5 0.00019 36.1 9.4 73 1-77 2-80 (294)
247 1vd2_A Protein kinase C, IOTA 82.9 4.2 0.00014 30.9 7.0 46 2-51 8-54 (89)
248 1h4r_A Merlin; FERM, neurofibr 82.4 6.1 0.00021 36.2 9.5 73 1-77 23-100 (314)
249 3onh_A Ubiquitin-activating en 82.2 4.1 0.00014 33.0 7.1 51 20-74 19-78 (127)
250 1p3q_Q VPS9P, vacuolar protein 82.2 0.47 1.6E-05 32.8 1.3 40 290-329 11-52 (54)
251 1tr8_A Conserved protein (MTH1 81.7 1.7 6E-05 33.9 4.6 35 292-326 66-101 (102)
252 2kmm_A Guanosine-3',5'-BIS(dip 81.7 3.3 0.00011 29.3 5.8 63 1-75 1-63 (73)
253 2l52_A Methanosarcina acetivor 80.9 7.5 0.00026 29.6 8.0 69 1-73 4-93 (99)
254 3ig3_A Plxna3 protein; plexin 80.3 7.3 0.00025 39.6 9.6 65 11-76 247-335 (627)
255 3e21_A HFAF1, FAS-associated f 78.3 2.4 8.3E-05 28.1 3.7 35 291-325 5-41 (45)
256 1ixs_A Holliday junction DNA h 78.2 2.2 7.4E-05 30.2 3.7 25 291-315 17-41 (62)
257 1v92_A NSFL1 cofactor P47; 3-h 77.9 4.2 0.00014 26.4 4.9 40 153-194 5-44 (46)
258 3ivf_A Talin-1; FERM domain, c 77.6 9.8 0.00033 35.8 9.4 71 2-74 87-166 (371)
259 4dbg_B Ring finger protein 31; 77.3 1.9 6.6E-05 36.3 3.7 37 154-192 103-139 (162)
260 1tr8_A Conserved protein (MTH1 77.2 2.8 9.7E-05 32.7 4.4 35 154-191 66-101 (102)
261 2i1j_A Moesin; FERM, coiled-co 77.0 7 0.00024 39.5 8.5 73 1-77 5-83 (575)
262 2cu3_A Unknown function protei 76.6 3.7 0.00013 28.7 4.6 56 8-74 4-59 (64)
263 1p3q_Q VPS9P, vacuolar protein 76.6 1 3.5E-05 31.1 1.6 42 151-193 10-51 (54)
264 2dal_A Protein KIAA0794; FAS a 76.1 4.5 0.00016 28.4 4.9 42 151-194 13-54 (62)
265 2q5w_D Molybdopterin convertin 75.9 5.1 0.00018 28.7 5.4 54 11-73 16-71 (77)
266 1ixs_A Holliday junction DNA h 75.8 6.8 0.00023 27.6 5.8 27 151-180 15-41 (62)
267 3qij_A Protein 4.1; cytoskelet 73.8 13 0.00044 34.0 8.8 69 1-72 18-92 (296)
268 1y8x_B Ubiquitin-activating en 72.3 3.2 0.00011 32.2 3.6 62 12-73 6-82 (98)
269 1tte_A Ubiquitin-conjugating e 72.2 2.8 9.4E-05 37.1 3.6 25 154-181 170-194 (215)
270 1wgy_A RAP guanine nucleotide 70.0 22 0.00076 27.7 8.0 69 4-75 13-86 (104)
271 2qho_B E3 ubiquitin-protein li 69.8 11 0.00038 25.3 5.2 40 293-332 11-52 (53)
272 2kvr_A Ubiquitin carboxyl-term 68.5 4.9 0.00017 32.6 4.1 33 13-48 58-90 (130)
273 2ns5_A Partitioning-defective 68.3 19 0.00063 27.1 6.9 72 1-74 3-81 (85)
274 1fm0_D Molybdopterin convertin 67.4 16 0.00054 26.2 6.4 57 11-73 17-75 (81)
275 1wgr_A Growth factor receptor- 66.5 20 0.00069 27.7 7.1 71 3-75 12-92 (100)
276 1ufz_A Hypothetical protein BA 63.0 9.8 0.00034 28.5 4.4 44 286-329 25-75 (83)
277 2g1e_A Hypothetical protein TA 62.9 24 0.00083 25.7 6.8 58 15-73 19-84 (90)
278 2dam_A ETEA protein; KIAA0887, 62.7 17 0.00057 25.9 5.5 43 151-194 16-58 (67)
279 4fp9_B Mterf domain-containing 61.1 23 0.00079 33.2 7.8 41 150-193 75-122 (335)
280 4eut_A Serine/threonine-protei 60.3 30 0.001 32.2 8.5 51 11-64 322-374 (396)
281 2qho_B E3 ubiquitin-protein li 58.4 26 0.00089 23.5 5.3 38 154-194 10-49 (53)
282 2eel_A Cell death activator CI 57.4 40 0.0014 25.6 7.1 51 21-77 28-80 (91)
283 3avx_A Elongation factor TS, e 57.0 1.7 5.8E-05 47.9 -0.9 35 156-193 8-43 (1289)
284 3hvz_A Uncharacterized protein 56.4 41 0.0014 24.5 6.9 62 2-75 7-68 (78)
285 1rws_A Hypothetical protein PF 56.0 4.3 0.00015 29.5 1.4 48 14-73 24-71 (77)
286 3m66_A Mterf3, mterf domain-co 55.9 19 0.00066 32.1 6.1 37 154-193 6-50 (270)
287 2lva_A Ubiquitin carboxyl-term 60.4 2.5 8.5E-05 34.1 0.0 39 154-194 19-58 (129)
288 3e21_A HFAF1, FAS-associated f 54.5 20 0.0007 23.5 4.4 35 152-189 4-40 (45)
289 3k6g_A Telomeric repeat-bindin 53.9 15 0.0005 28.6 4.1 38 292-329 11-52 (111)
290 2dzl_A Protein FAM100B; UBA-li 53.8 24 0.00082 25.0 5.1 37 155-194 19-56 (66)
291 1vdl_A Ubiquitin carboxyl-term 53.5 36 0.0012 24.9 5.9 41 153-194 24-64 (80)
292 2lva_A Ubiquitin carboxyl-term 57.6 3 0.0001 33.6 0.0 36 294-329 21-58 (129)
293 2hj1_A Hypothetical protein; s 50.4 23 0.00079 27.1 4.9 59 11-74 26-84 (97)
294 3m66_A Mterf3, mterf domain-co 48.8 49 0.0017 29.3 7.6 38 292-329 148-193 (270)
295 2ylm_A Ubiquitin carboxyl-term 48.7 55 0.0019 32.5 8.6 58 12-72 353-418 (530)
296 3k6g_A Telomeric repeat-bindin 48.4 34 0.0012 26.5 5.4 38 155-195 15-53 (111)
297 3ge3_C Toluene-4-monooxygenase 48.4 70 0.0024 23.8 6.9 62 13-74 17-82 (84)
298 4g3o_A E3 ubiquitin-protein li 47.8 40 0.0014 23.4 5.2 42 151-194 15-56 (58)
299 2dhz_A RAP guanine nucleotide 46.9 42 0.0014 26.8 6.0 66 5-75 14-92 (120)
300 3e7l_A Transcriptional regulat 46.2 30 0.001 23.7 4.6 40 147-196 6-45 (63)
301 3e7l_A Transcriptional regulat 45.4 12 0.0004 25.9 2.3 24 303-326 19-42 (63)
302 1pgy_A SWA2P; UBA, ubiquitin, 45.2 12 0.00042 24.5 2.1 24 294-317 10-33 (47)
303 2ejs_A Autocrine motility fact 44.5 56 0.0019 22.6 5.6 42 151-194 11-52 (58)
304 3u52_E Phenol hydroxylase comp 43.9 91 0.0031 24.8 7.4 61 13-73 40-107 (119)
305 1umq_A Photosynthetic apparatu 43.6 12 0.00042 27.6 2.2 23 304-326 42-64 (81)
306 3au4_A Myosin-X; protein-prote 43.4 54 0.0018 32.5 7.6 45 1-48 217-263 (555)
307 3qa8_A MGC80376 protein; kinas 41.2 30 0.001 35.5 5.5 51 9-62 320-371 (676)
308 1v8c_A MOAD related protein; r 41.2 78 0.0027 26.4 7.2 56 14-73 17-81 (168)
309 1q1o_A Cell division control p 40.9 30 0.001 26.6 4.1 26 10-35 22-47 (98)
310 3w1s_C Ubiquitin-like protein 39.0 1E+02 0.0036 23.1 6.9 57 14-75 26-85 (91)
311 1cuk_A RUVA protein; DNA repai 38.9 26 0.00088 30.5 3.9 25 291-315 160-184 (203)
312 1f2r_I Inhibitor of caspase-ac 37.9 61 0.0021 25.0 5.4 50 21-76 37-90 (100)
313 3mva_O Transcription terminati 37.1 34 0.0011 31.8 4.7 41 151-194 17-61 (343)
314 2zc2_A DNAD-like replication p 36.5 31 0.0011 24.7 3.5 30 286-315 17-47 (78)
315 2ztd_A Holliday junction ATP-d 36.2 28 0.00096 30.5 3.7 24 292-315 165-188 (212)
316 2ekf_A Ancient ubiquitous prot 36.1 70 0.0024 22.4 5.0 42 151-194 11-52 (61)
317 2inc_C TOUB protein; DIIRON, 4 35.5 1.4E+02 0.0046 22.2 8.3 61 13-74 15-81 (83)
318 4a6q_A Histone deacetylase com 35.2 1.3E+02 0.0045 24.6 7.4 64 12-77 55-140 (143)
319 3r8s_T 50S ribosomal protein L 33.3 88 0.003 23.7 5.6 40 10-52 27-67 (93)
320 2c7h_A RBBP6, retinoblastoma-b 33.3 92 0.0031 23.3 5.6 33 3-35 9-43 (86)
321 2ylm_A Ubiquitin carboxyl-term 33.2 37 0.0013 33.8 4.5 58 15-75 151-217 (530)
322 4gdk_A Ubiquitin-like protein 32.4 79 0.0027 23.7 5.3 59 14-75 23-85 (91)
323 2kmc_A Fermitin family homolog 32.3 1.7E+02 0.0059 22.5 9.5 73 2-75 21-99 (102)
324 1vdl_A Ubiquitin carboxyl-term 31.8 83 0.0029 23.0 4.9 39 292-330 25-65 (80)
325 1pve_A HHR23B, UV excision rep 31.0 14 0.00047 26.9 0.7 16 252-267 44-63 (72)
326 3pvl_A Myosin VIIA isoform 1; 30.7 97 0.0033 31.6 7.2 46 1-48 264-309 (655)
327 4gmv_A RAS-associated and plec 30.4 1.7E+02 0.0057 26.6 8.1 69 3-73 34-112 (281)
328 1ci4_A Protein (barrier-TO-aut 30.2 99 0.0034 23.3 5.3 38 292-329 28-66 (89)
329 1cuk_A RUVA protein; DNA repai 29.6 83 0.0028 27.1 5.6 25 153-180 160-184 (203)
330 1ntc_A Protein (nitrogen regul 29.2 17 0.00059 27.0 1.0 24 303-326 51-74 (91)
331 2i1s_A Hypothetical protein; m 28.9 1.3E+02 0.0046 25.2 6.8 31 11-44 21-52 (188)
332 2v1y_A Phosphatidylinositol-4, 27.6 80 0.0027 24.6 4.6 69 4-75 23-104 (108)
333 2ztd_A Holliday junction ATP-d 27.5 95 0.0033 27.0 5.7 25 153-180 164-188 (212)
334 1g2h_A Transcriptional regulat 27.4 29 0.00098 23.7 1.8 22 304-326 22-43 (61)
335 2h5n_A Hypothetical protein PG 27.2 95 0.0032 24.6 5.2 40 286-325 34-75 (133)
336 1eto_A FIS, factor for inversi 26.7 33 0.0011 26.1 2.3 24 303-326 58-81 (98)
337 3hk0_A Growth factor receptor- 26.1 2.1E+02 0.0072 25.5 7.9 68 3-73 11-87 (256)
338 3tve_T 50S ribosomal protein L 24.8 1.1E+02 0.0038 23.0 4.9 40 10-52 21-61 (92)
339 1pqs_A Cell division control p 24.6 58 0.002 23.8 3.2 36 12-50 3-43 (77)
340 3lxf_A Ferredoxin; iron, iron- 24.5 82 0.0028 23.8 4.2 28 2-29 2-29 (104)
341 2nvu_B Maltose binding protein 24.3 1.2E+02 0.004 31.4 6.6 60 13-73 714-789 (805)
342 2kna_A Baculoviral IAP repeat- 24.2 1.3E+02 0.0043 23.1 5.2 36 156-194 30-72 (104)
343 1j0g_A Hypothetical protein 18 24.2 2E+02 0.0068 21.3 5.9 62 13-77 26-88 (92)
344 1eo6_A GATE-16, golgi-associat 23.0 1.6E+02 0.0054 23.0 5.7 58 16-76 50-111 (117)
345 3hrd_D Nicotinate dehydrogenas 22.0 63 0.0022 26.9 3.3 27 1-28 4-30 (160)
346 1ixr_A Holliday junction DNA h 21.9 19 0.00065 31.0 0.0 24 292-315 147-170 (191)
347 1n62_A Carbon monoxide dehydro 21.8 65 0.0022 27.0 3.3 27 2-29 5-31 (166)
348 2cu1_A Mitogen-activated prote 21.5 2.3E+02 0.0078 21.8 6.0 44 3-52 9-53 (103)
349 1ibx_B Chimera of IGG binding 21.1 82 0.0028 25.9 3.6 50 20-75 81-134 (145)
350 2cs4_A Protein C12ORF2; GTP bi 20.9 65 0.0022 24.6 2.8 72 1-78 8-88 (95)
351 2zjr_Q 50S ribosomal protein L 20.6 1.1E+02 0.0036 23.3 4.0 36 13-51 25-61 (95)
352 1t3q_A Quinoline 2-oxidoreduct 20.4 72 0.0025 26.5 3.3 28 1-29 10-37 (168)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=3.6e-56 Score=432.07 Aligned_cols=320 Identities=32% Similarity=0.525 Sum_probs=197.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHH---HhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIED---VQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~---~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+++|++|.|+|++++||.+||++|+. +.| +++++|||||+||+|+|+++|++|+|++|++|++++.+.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~g---ip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSS---CCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCC---CChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999 456 999999999999999999999999999999996666555
Q ss_pred CCCCC-CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC--CCCC--CCCCCCCCCCcc-ccccCCCCCcccccccccCC
Q 019817 78 KTLGS-AGASSAQPAHTTPPTT--APSSNSTPPQEASVP--PPAP--TPSIPASNVTSN-VTAANANSDTYGQAASNLVA 149 (335)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~~p~~--~~~~~~~~~~~p~~~--~~~~--~~~~~p~~~~~~-~~~~~~~~~~~~~~~s~~~~ 149 (335)
+..+. +.+....+.+.+...+ .+.+.+.++.++.++ +.++ ++...+.++... ..+.......++.+.|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~l~~ 164 (368)
T 1oqy_A 85 KAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVT 164 (368)
T ss_dssp CSSSCCCCCSSCCCCCSSSCCCSCCCSSSCCCCCCCSSSSCCCCCSCSCCCCSSTTCSCCCSCSCCCSCCCCCCCTTTCC
T ss_pred CCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCcccccccccccccccccccccccC
Confidence 43332 2111111111110000 000000000000000 0000 000001000000 00011112234566889999
Q ss_pred CCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCCCCcchhhcccCCCCCCCCCCC
Q 019817 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPN 229 (335)
Q Consensus 150 ~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (335)
|+.+++.|++|++|| |+|++|++||++++||++|||||||+|||+..+...+.. .+. ...+. ...++..
T Consensus 165 g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~~~----~~~---~~~~~-~~~~~~~ 233 (368)
T 1oqy_A 165 GSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSV----QES---QVSEQ-PATEAAG 233 (368)
T ss_dssp TTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCCCC----CCC---CSSCC-CCSSCCS
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccCCc----ccc---ccccc-cCccccc
Confidence 999999999999999 999999999999999999999999999998744221110 000 00000 0000011
Q ss_pred CCCCCCcch---h---cccCCCC-------------CCCCcHHHhhcchh----hhcCCCCCC-CCC----CCCCCC--C
Q 019817 230 SSPLNMFPQ---E---TLSGAPA-------------GGLGSLDFLRNNQQ----LINEPVDGS-EGD----MFDQPE--Q 279 (335)
Q Consensus 230 ~~~~~~~~~---~---~~~~~~~-------------~~~~~l~~lr~np~----~~~e~~~~~-~~~----~~~~~~--~ 279 (335)
.+++++|.. + ..-..++ ..+..+++|++||+ ||+++..+. .+. ..+... .
T Consensus 234 ~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
T 1oqy_A 234 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEA 313 (368)
T ss_dssp CCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCC
T ss_pred cchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccC
Confidence 122222210 0 0000000 12233444555555 677775421 010 011111 1
Q ss_pred CCCccccCCcccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 019817 280 DMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 334 (335)
Q Consensus 280 ~~~~~~~lt~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~~ 334 (335)
.....|+||++|+++|+||++|||++++|++||++|+||+++|+||||+|++|++
T Consensus 314 ~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d~~ 368 (368)
T 1oqy_A 314 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 368 (368)
T ss_dssp TTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCCCC
T ss_pred CccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCcCC
Confidence 1235789999999999999999999999999999999999999999999998764
No 2
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=149.52 Aligned_cols=117 Identities=23% Similarity=0.379 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHhCCCCcccccCCCCCCCCcchhhcccCCCCCCCCCCCCCC
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSP 232 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~~~-~~~~A~~~L~~giP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (335)
++.|++|++|| |++.+|++||+.+.| |++.|++||+.|+++.... .|..
T Consensus 4 ~~~l~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~-epl~-------------------------- 53 (126)
T 2lbc_A 4 ESSVMQLAEMG---FPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFA-EPLT-------------------------- 53 (126)
T ss_dssp THHHHHHHTTS---SCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSS-CTTC--------------------------
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccc-cccc--------------------------
Confidence 46899999999 999999999999977 8999999999997654211 1110
Q ss_pred CCCcchhcccCCCCCCCCcHHHhhcchhhhcCCCCCCCCCCCCCCCCCCCccccCCcccHHHHHHHHHCCCChHHHHHHH
Q 019817 233 LNMFPQETLSGAPAGGLGSLDFLRNNQQLINEPVDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAF 312 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~lr~np~~~~e~~~~~~~~~~~~~~~~~~~~~~lt~ee~~aI~rL~~lGF~~~~~i~Ay 312 (335)
+ ++. .+.... .... + + .. ...+. ...+.|.+|++|||++..|++||
T Consensus 54 --~-~~~-~s~~~~-~~~~----------l-~-------------~~----~~~~~-~~e~~v~~L~~MGF~~~~a~~AL 99 (126)
T 2lbc_A 54 --M-PGY-GGAASA-GASV----------F-G-------------AS----GLDNQ-PPEEIVAIITSMGFQRNQAIQAL 99 (126)
T ss_dssp --C-SSC-CSSSSS-CCCC----------S-T-------------TS----SCCCC-CCHHHHHHHHHHTSCHHHHHHHH
T ss_pred --c-ccc-cccccc-chhh----------h-c-------------cc----ccccC-cCHHHHHHHHHcCCCHHHHHHHH
Confidence 0 000 000000 0000 0 0 00 00111 35678999999999999999999
Q ss_pred HHhCCCHHHHHHHHhccCC-CCC
Q 019817 313 LACDRNEELAANYLLENAG-DFE 334 (335)
Q Consensus 313 ~acdknee~Aan~Lf~~~~-d~~ 334 (335)
++|++|+++|++|||+|.+ |.+
T Consensus 100 ~~~~~~~e~A~e~L~~~~~~d~~ 122 (126)
T 2lbc_A 100 RATNNNLERALDWIFSHPEFEED 122 (126)
T ss_dssp HHHTSCHHHHHHHHHTCCSSCCC
T ss_pred HHcCCCHHHHHHHHHhCCCCccC
Confidence 9999999999999999988 544
No 3
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.1e-19 Score=144.07 Aligned_cols=76 Identities=28% Similarity=0.444 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+++|+.+.|+|++++||.+||++|+...| +++++|||+|+||.|+|+.+|++|||++|++|+|++++++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~ 77 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKS 77 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 4
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.6e-18 Score=134.37 Aligned_cols=77 Identities=42% Similarity=0.714 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~---~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+++|+.+.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999865
Q ss_pred CCC
Q 019817 78 KTL 80 (335)
Q Consensus 78 ~~~ 80 (335)
+..
T Consensus 78 ~~~ 80 (95)
T 1uel_A 78 KAV 80 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=2.1e-18 Score=134.53 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=71.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++|+.+.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+++|.+|+| +|++|||+++.+.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 8999999998654
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=130.01 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|||++|++|||+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999864
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=3.5e-18 Score=133.16 Aligned_cols=78 Identities=38% Similarity=0.553 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~~ 80 (335)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977654
Q ss_pred C
Q 019817 81 G 81 (335)
Q Consensus 81 ~ 81 (335)
.
T Consensus 78 ~ 78 (88)
T 4fbj_B 78 G 78 (88)
T ss_dssp -
T ss_pred C
Confidence 3
No 8
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.75 E-value=1.9e-19 Score=124.25 Aligned_cols=47 Identities=53% Similarity=0.854 Sum_probs=43.2
Q ss_pred CcccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 019817 288 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 334 (335)
Q Consensus 288 t~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~~ 334 (335)
|++|+++|+||++|||++.+||+||++|+||+++|+||||+|++|.+
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 57899999999999999999999999999999999999999998753
No 9
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.74 E-value=9.1e-18 Score=132.31 Aligned_cols=77 Identities=39% Similarity=0.558 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~~ 80 (335)
|+|+||+++|+.+.|+|++++||.+||.+|+..+| +|+++|||+|+|+.|+|+.+|++|+|++|++|||+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 10
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.74 E-value=8.3e-18 Score=129.40 Aligned_cols=75 Identities=39% Similarity=0.705 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~---~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+.+|+.+.++|++++||.+||++|+.. .| +++++|||+|+|+.|+|+++|++|||++|++|||+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 77 999999999999999999999999999999999998876
Q ss_pred C
Q 019817 78 K 78 (335)
Q Consensus 78 ~ 78 (335)
+
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=6.1e-18 Score=130.90 Aligned_cols=72 Identities=35% Similarity=0.531 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCchhhcCCCCCCEEEEEee
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV-LKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~-L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
|+|+||++.|+.+.++|++++||.+||++|+...| +|+++|||+|+|+. |+|+++|++|||++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=7.8e-18 Score=131.78 Aligned_cols=74 Identities=41% Similarity=0.623 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+++|+.+.|+|++++||.+||.+|+..+| +++++|||+|+|+.|+|+.+|++|||++|++|+|++|.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998753
No 13
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.73 E-value=8.3e-18 Score=131.85 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+|++|+|+.+|++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999986
No 14
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.73 E-value=6.6e-18 Score=134.52 Aligned_cols=74 Identities=30% Similarity=0.522 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEE--EeCCCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCC-CCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEI--RVQPSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i--~V~~~~TV~dLK~~I-~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI-~~g~~I~vv~~~ 76 (335)
|+|+||+++|+.|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998776 666999999999999 77878 99999999999999999999999999 999999999986
Q ss_pred C
Q 019817 77 S 77 (335)
Q Consensus 77 ~ 77 (335)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=99.73 E-value=2.6e-18 Score=148.81 Aligned_cols=50 Identities=46% Similarity=0.848 Sum_probs=45.7
Q ss_pred ccccCCcccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 019817 283 HAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 332 (335)
Q Consensus 283 ~~~~lt~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d 332 (335)
..|++|++|+++|+||++|||+|++||+||++||||+++|+||||++++|
T Consensus 122 ~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 122 FQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp ECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred ccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 47899999999999999999999999999999999999999999998765
No 16
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.4e-17 Score=132.74 Aligned_cols=75 Identities=28% Similarity=0.334 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+.+|+ +.|+|++++||.+||++|+..+| +++++|||+|+||.|+|+++|++|+|++|++|||+++.+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 78999998886 79999999999999999999999 99999999999999999999999999999999999987654
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.8e-18 Score=131.60 Aligned_cols=73 Identities=30% Similarity=0.522 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEeC--CCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCC-CCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQ--PSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~--~~~TV~dLK~~I-~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI-~~g~~I~vv~~~ 76 (335)
|+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999888755 999999999999 88989 99999999999999999999999999 699999999874
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.72 E-value=3.3e-17 Score=122.78 Aligned_cols=74 Identities=39% Similarity=0.583 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+.+|+.+.++|++++||.+||.+|+...| +|++.|||+|+|+.|+|+.+|++|||++|++|+|+++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998764
No 19
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.4e-17 Score=130.96 Aligned_cols=75 Identities=39% Similarity=0.552 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++|+.|.|+|++++||.+||++|+..+| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 20
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=133.39 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+++|+.+.++|++++||.+||.+|+...| +++++|||+|+|+.|+|+++|++|||++|++|||+++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999886654
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=124.64 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEE-EEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHF-EIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~-~i~-V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+||+++|+.+ .++ |++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|||++|++|||+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 899 9999999999999999999 99999999999999999999999999999999999875
No 22
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.71 E-value=2e-17 Score=127.89 Aligned_cols=74 Identities=39% Similarity=0.577 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+++|+.+.|+|++++||.+||.+|+...| +|++.|||+|+|+.|+|+.+|.+|+|++|++|||+++.+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998865
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.71 E-value=5.3e-17 Score=121.63 Aligned_cols=74 Identities=41% Similarity=0.596 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+.+|+.+.++|++++||.+||++|+..+| +|+++|||+|+|+.|+|+.+|++|||++|++|+|+++..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998765
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.7e-17 Score=132.28 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|.||+|+|+.+|++|||+++++|+|+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999986
No 25
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=127.05 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 26
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=7.5e-17 Score=125.25 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=72.0
Q ss_pred CEEEEEeCCC-CEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKG-SHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g-~~~~i-~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++| +.+.| +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|||+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7899999999 79999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred C
Q 019817 79 T 79 (335)
Q Consensus 79 ~ 79 (335)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=124.08 Aligned_cols=73 Identities=29% Similarity=0.458 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|||+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999874
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.7e-17 Score=125.49 Aligned_cols=75 Identities=40% Similarity=0.579 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++|+.+.++|++++||.+||++|++.++ +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=6.3e-17 Score=124.07 Aligned_cols=75 Identities=40% Similarity=0.566 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+.+|+.+.|+|++++||.+||++|+..++ +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998664
No 30
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=6.2e-17 Score=127.19 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=70.7
Q ss_pred CEEEEEeCCCC--EEEEEeCCCCcHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCchhhc--CCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ--GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~--~~~i~V~~~~TV~dLK~~I~~~~--g~~~ip~~~qrLi~~Gk~L~D~~tL~d~--gI~~g~~I~vv~ 74 (335)
|+|+||+.+++ .+.|+|++++||.+||++|+..+ + +++++|||||+||+|+|+.+|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 78999999998 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred ecCCC
Q 019817 75 SKSKT 79 (335)
Q Consensus 75 ~~~~~ 79 (335)
+.+..
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86654
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=127.26 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++|+.+.++|++++||.+||.+|+...| +|+++|||+|+|+.|+|+++|++|||++|++|+|+++...
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988654
No 32
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=4e-17 Score=124.03 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+.+|+.+.++|.+++||.+||++|+++.| +|+++|||+|+|+.|+|+++|++|+|++|++|+|+++..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998765
No 33
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=7.4e-17 Score=125.61 Aligned_cols=75 Identities=37% Similarity=0.596 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988654
No 34
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.70 E-value=1.2e-17 Score=136.95 Aligned_cols=108 Identities=22% Similarity=0.335 Sum_probs=78.6
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCC--CcccccCCCCCCCCcchhhcccCCCCCCCCCC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP--ETAEVAVPVAHFPASQAAETGAAGAAPVSGVP 228 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (335)
++..+.|.+|++|| |++++|++||++++||+++|||||+.|+- +.. ...+. .
T Consensus 6 ~~e~~~v~~l~~MG---Fp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~-~d~~~--------~-------------- 59 (118)
T 4ae4_A 6 PSERQCVETVVNMG---YSYECVLRAMKAAGANIEQILDYLFAHGQLCEKG-FDPLL--------V-------------- 59 (118)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTT-CCHHH--------H--------------
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccC-CChhh--------h--------------
Confidence 55678999999999 99999999999999999999999998831 100 00000 0
Q ss_pred CCCCCCCcchhcccCCCCCCCCcHHHhhcchhhhcCCCCCCCCCCCCCCCCCCCccccCCcccHHHHHHHHHCCCChHHH
Q 019817 229 NSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQLINEPVDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALV 308 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~lr~np~~~~e~~~~~~~~~~~~~~~~~~~~~~lt~ee~~aI~rL~~lGF~~~~~ 308 (335)
...++. ... ...-..++.+.|.+|++|||++.+|
T Consensus 60 --------------------e~~l~~--------~~~------------------~~~~~~~~~~~v~~L~eMGF~~~~a 93 (118)
T 4ae4_A 60 --------------------EEALEM--------HQC------------------SEEKMMEFLQLMSKFKEMGFELKDI 93 (118)
T ss_dssp --------------------HHHHHH--------CSS------------------CHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred --------------------HHHHHh--------ccC------------------CccccccCHHHHHHHHHcCCCHHHH
Confidence 000000 000 0000224567899999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhccC
Q 019817 309 IEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 309 i~Ay~acdknee~Aan~Lf~~~ 330 (335)
++|++.|++|.++|++|||...
T Consensus 94 ~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 94 KEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHhc
Confidence 9999999999999999999753
No 35
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=8e-17 Score=124.47 Aligned_cols=75 Identities=28% Similarity=0.446 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|+++++|||+++...
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 36
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=9.1e-17 Score=126.65 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~-~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+++|+.+.++|++++||.+||++|+.. . +++|||+|+||.|+|+ ++|++|+|++|++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----Q-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----T-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----C-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 789999999999999999999999999999877 3 7899999999999999 99999999999999999876543
No 37
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=1.2e-16 Score=126.22 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=71.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~-~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+.+| ++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+ ++|++|||++|++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 38
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=3.7e-17 Score=131.59 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCchhhcCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC---------------GQQLLIHNGKVLK-DETTLADNKV 64 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~---------------~~qrLi~~Gk~L~-D~~tL~d~gI 64 (335)
|+|+||+++|++|.|+|++++||.+||++|++..+ +++ +.|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 5699999999
Q ss_pred CCCCEEEEEeecCCC
Q 019817 65 SEDGFLVVMLSKSKT 79 (335)
Q Consensus 65 ~~g~~I~vv~~~~~~ 79 (335)
++|++||++.+.+.+
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999987765
No 39
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.2e-16 Score=127.90 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=69.7
Q ss_pred CEEEEEeCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcCCCCCCEEEEEee
Q 019817 1 MKLTVKTLKG----SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 1 M~I~Vkt~~g----~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~-~tL~d~gI~~g~~I~vv~~ 75 (335)
|+|+|++..+ +.+.|+|++++||.+||++|+..+| +++++|||+|+||.|+|+ ++|++|+|++|++|||+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999887 7999999999999999987
Q ss_pred cCCC
Q 019817 76 KSKT 79 (335)
Q Consensus 76 ~~~~ 79 (335)
.+..
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.4e-16 Score=119.99 Aligned_cols=71 Identities=28% Similarity=0.529 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
|+|+||+ +|+.+.++|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999 9999999999999999999999999999999999865
No 41
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.68 E-value=7.7e-17 Score=127.86 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++|+.+.|+|.+++||.+||.+|+.+.| +|+++|||+|+|+.|+|+++|++|+|++|++|||+++.+.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.68 E-value=1.6e-16 Score=129.24 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+++|+.+.|+|++++||.+||.+|+...| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=2.5e-16 Score=124.84 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+.+|+.+.++|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|||++|++|+|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988654
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=8.7e-17 Score=126.91 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=71.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+. |+.+.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|++|++|||+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999998 99999999999999999999999999 99999999999999999999999999999999999886653
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=126.05 Aligned_cols=74 Identities=28% Similarity=0.358 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+. |+.+.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 89999999999999999999999999 9999999999999999999999999999999999987654
No 46
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2e-16 Score=125.99 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=64.9
Q ss_pred EEEEEeCC----CCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 2 KLTVKTLK----GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 2 ~I~Vkt~~----g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
.|.|+..+ ++++.|+|++++||.+||++|+++.| +|+++|||||+||+|+|++||++|+|++|++|+||+.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 36777777 77899999999999999999999999 9999999999999999999999999999999965543
No 47
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2e-16 Score=126.25 Aligned_cols=75 Identities=28% Similarity=0.334 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+.+|+ +.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999886543
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.8e-16 Score=130.50 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+. |+.+.|+|++++||.+||++|+..+| +++++|||+|+||+|+|+++|++|+|++|++|+|+++.+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999998 99999999999999999999999999 99999999999999999999999999999999999987643
No 49
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=5.2e-16 Score=127.08 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCeecCCCCchhhcCCCCCC--EEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKD---NY--PCGQQLLIHNGKVLKDETTLADNKVSEDG--FLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~---~i--p~~~qrLi~~Gk~L~D~~tL~d~gI~~g~--~I~vv 73 (335)
|+|+||++.|+++.|+|++++||.+||++|+...+.+ .+ ++++|||||.||+|+|+++|++|+|+.++ +|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999943211 13 69999999999999999999999998775 57777
Q ss_pred eecC
Q 019817 74 LSKS 77 (335)
Q Consensus 74 ~~~~ 77 (335)
++..
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 6654
No 50
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=7.6e-18 Score=126.92 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+.+|+.+.++|++++||.+||.+|+...| +|++.|+|+|+|+.|+|+.+|++|||++|++|||+++.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998865
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=123.02 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+ |+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 7899998 89999999999999999999999999 999999999999999999999999999999999998865
No 52
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.8e-16 Score=124.54 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~-~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||. .|+.| .|+|++++||.+||.+|+..+| +|+++|||+|+||.|+|+ +|++|+|++|++|+||.+..
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899994 78999 6999999999999999999999 999999999999999999 99999999999999987543
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.64 E-value=8.3e-16 Score=134.01 Aligned_cols=77 Identities=38% Similarity=0.514 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~~ 80 (335)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|||+++.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877543
No 54
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=6.3e-16 Score=124.78 Aligned_cols=74 Identities=20% Similarity=0.159 Sum_probs=68.3
Q ss_pred CEEEEEeCCC---CEEEEEeC--------C-CCcHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCchhhcCCC
Q 019817 1 MKLTVKTLKG---SHFEIRVQ--------P-SDTVMAVKKNIEDVQ--GKDNYPCGQ-QLLIHNGKVLKDETTLADNKVS 65 (335)
Q Consensus 1 M~I~Vkt~~g---~~~~i~V~--------~-~~TV~dLK~~I~~~~--g~~~ip~~~-qrLi~~Gk~L~D~~tL~d~gI~ 65 (335)
|+|+||+.++ +++.|+|+ + ++||.+||++|+... | +++++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 88999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCEEEEEeecC
Q 019817 66 EDGFLVVMLSKS 77 (335)
Q Consensus 66 ~g~~I~vv~~~~ 77 (335)
+|++|||+++..
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=123.83 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998865
No 56
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=6.9e-16 Score=127.96 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=66.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCchhhcCCCCCC--EE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIED------VQGKDNY--PCGQQLLIHNGKVLKDETTLADNKVSEDG--FL 70 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~------~~g~~~i--p~~~qrLi~~Gk~L~D~~tL~d~gI~~g~--~I 70 (335)
|+|+||+++|+++.|+|++++||.+||++|+. +.| + ++++|||||.||+|+|+++|++|+|+.++ +|
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999999 445 5 58999999999999999999999999887 56
Q ss_pred EEEeecC
Q 019817 71 VVMLSKS 77 (335)
Q Consensus 71 ~vv~~~~ 77 (335)
||+++..
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 7777654
No 57
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.7e-15 Score=118.61 Aligned_cols=73 Identities=26% Similarity=0.396 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCEEEEEeCCC-----CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPS-----DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKD-ETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~-----~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D-~~tL~d~gI~~g~~I~vv~ 74 (335)
|+|+||+ .|+.+.|+|+++ +||.+||++|+..+| +|+++|||+|+||.|+| +++|++|+|++|++|||+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999985 999999999999999 99999999999999988 6689999999999999987
Q ss_pred ecC
Q 019817 75 SKS 77 (335)
Q Consensus 75 ~~~ 77 (335)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 643
No 58
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3e-16 Score=125.48 Aligned_cols=72 Identities=28% Similarity=0.529 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+||+ .|+.+.|+|++++||.+||++|+..+| +|+++|||+|+||.|+|+.+|++|||++|++|+|+.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 4688887 899999999999999999999999999 99999999999999999999999999999999998764
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=1.6e-15 Score=118.61 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i-~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi---~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+||. .|+.|.| +|++++||.+||.+|++.+| +|+++|||+ |+||.|+|+.+|++|+|++|++|+||...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999998754
No 60
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.62 E-value=1e-15 Score=124.99 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=69.2
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCC-------CCEEEE
Q 019817 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE-------DGFLVV 72 (335)
Q Consensus 1 M~I~Vkt~~g~-~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~-------g~~I~v 72 (335)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|||
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78888888777 688999999999999999999999 9999999999999999999999999999 999999
Q ss_pred Eeec
Q 019817 73 MLSK 76 (335)
Q Consensus 73 v~~~ 76 (335)
++|.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9985
No 61
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-16 Score=123.02 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=64.2
Q ss_pred CEEEEEeCCCC--EEEEEeCCCCcHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCchhhc--CCCCCCEEEEE
Q 019817 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ-GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~--~~~i~V~~~~TV~dLK~~I~~~~-g~~~ip~~~qrLi~~Gk~L~D~~tL~d~--gI~~g~~I~vv 73 (335)
|+|+||+++|+ .+.|+|++++||.+||++|+.+. | ..++++|||||+||+|+|+++|++| +|+++++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g--~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPS--KPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTT--CCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcC--CCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999974 4 1446999999999999999999999 99999999985
No 62
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.61 E-value=9.7e-16 Score=125.46 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=67.6
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCC-------CCCEEEE
Q 019817 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVS-------EDGFLVV 72 (335)
Q Consensus 1 M~I~Vkt~~g~-~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~-------~g~~I~v 72 (335)
|.++|+...++ ++.|+|++++||.+||.+|+.+.| +|+++|||||+||.|+|+++|++|||+ .+++|||
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77888877776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred Eee
Q 019817 73 MLS 75 (335)
Q Consensus 73 v~~ 75 (335)
++|
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.8e-15 Score=122.39 Aligned_cols=76 Identities=36% Similarity=0.507 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
++|+||+++|+.+.++|++++||.+||.+|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47999999999999999999999999999999999 99999999999999999999999999999999999987653
No 64
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.6e-15 Score=125.50 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEE-EEEeCCCCcHHHHHHHHHHHhC--CCCCCC--CCeEEEeCCeecCCCCchhhcCCCCC------CE
Q 019817 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQG--KDNYPC--GQQLLIHNGKVLKDETTLADNKVSED------GF 69 (335)
Q Consensus 1 M~I~Vkt~~g~~~-~i~V~~~~TV~dLK~~I~~~~g--~~~ip~--~~qrLi~~Gk~L~D~~tL~d~gI~~g------~~ 69 (335)
|+|+||+++|+.+ .+++++++||.+||++|+...+ ...+|+ ++|||||+||+|+|++||++|+|+.| .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 6999999999999999976543 112775 89999999999999999999999999 56
Q ss_pred EEEEeecCCC
Q 019817 70 LVVMLSKSKT 79 (335)
Q Consensus 70 I~vv~~~~~~ 79 (335)
|||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888876643
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.61 E-value=2.2e-15 Score=129.21 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|||+++.+.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998765
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.7e-15 Score=122.98 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=71.8
Q ss_pred CEEEEEeC---CCCEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTL---KGSHFEIRVQP-SDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~---~g~~~~i~V~~-~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+|++. +|+.+.++|++ ++||.+||.+|+..+| +|+++|||+|+|+.|+|+++|++|+|++|++|||+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 019817 77 SKT 79 (335)
Q Consensus 77 ~~~ 79 (335)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 67
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=121.18 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=68.1
Q ss_pred EEEEE-eCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 2 KLTVK-TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 2 ~I~Vk-t~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
.|+|+ ...++.+.+.++++.||.+||++|+...+ +|++.|||||+||+|+|+.||.+|||++|.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45665 55788999999999999999999999999 9999999999999999999999999999999999988654
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=4.4e-15 Score=114.91 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=66.2
Q ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 3 I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
+.+++++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456778999999999999999999999999999 9999999999999999999999999999999999864
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=1.6e-15 Score=119.85 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=65.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+|| +.|+.+.|+|++++||.+||++|+..+| +|+++|||+|+||.| |+.+|++|+|+++++|||+.+.
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678898 5789999999999999999999999999 999999999999999 5559999999999999998654
No 70
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.59 E-value=2.8e-15 Score=132.75 Aligned_cols=76 Identities=38% Similarity=0.540 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|++|++|||+++.+..
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 71
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=129.03 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+||+++|+++.|+|++++||.+||++|+..+| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998754
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.58 E-value=5.9e-15 Score=118.47 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=68.3
Q ss_pred CEEEEEeCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCC-CCCCEEEEEeec
Q 019817 1 MKLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g--~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI-~~g~~I~vv~~~ 76 (335)
|+|+|++..+ ..+.|+|++++||.+||++|++++| +|++.|||+|+|+.|+|+++|.+||| ++|++|||++..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 6899999999999999999999999 99999999999999999999999999 599999999864
No 73
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.58 E-value=6e-15 Score=126.52 Aligned_cols=72 Identities=29% Similarity=0.423 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-H-NGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi-~-~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+ | +|+.|+|+.+|++|+|++|++||++++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 79999999999999999999999999999999999 999999999 9 799999999999999999999999987
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.56 E-value=2.4e-16 Score=131.24 Aligned_cols=76 Identities=38% Similarity=0.540 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|++.|+|+|+|+.|+|+.+|++|||++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.56 E-value=1.8e-14 Score=121.90 Aligned_cols=73 Identities=41% Similarity=0.608 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+||+++|+.+.++|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999864
No 76
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.55 E-value=3.3e-15 Score=103.88 Aligned_cols=49 Identities=51% Similarity=0.954 Sum_probs=46.5
Q ss_pred ccCCCCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 019817 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197 (335)
Q Consensus 146 ~~~~~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~ 197 (335)
.|++|+.+++.|++|++|| |++++|++||++++||+++|++||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 3678999999999999999 999999999999999999999999999985
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.8e-14 Score=117.55 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=69.5
Q ss_pred CEEEEEeC----------CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEE
Q 019817 1 MKLTVKTL----------KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFL 70 (335)
Q Consensus 1 M~I~Vkt~----------~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I 70 (335)
++|+|+.. +|+.+.|+|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|++|++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777765 478899999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 019817 71 VVMLSKSKT 79 (335)
Q Consensus 71 ~vv~~~~~~ 79 (335)
||+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987653
No 78
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.54 E-value=6.6e-16 Score=132.35 Aligned_cols=78 Identities=37% Similarity=0.503 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~~ 80 (335)
|+|+|++++|+.+.|+|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++.....
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877654
Q ss_pred C
Q 019817 81 G 81 (335)
Q Consensus 81 ~ 81 (335)
.
T Consensus 78 K 78 (152)
T 3u5c_f 78 K 78 (152)
T ss_dssp -
T ss_pred c
Confidence 3
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=2.6e-14 Score=120.81 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|||++|++|||+++.+.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999988653
No 80
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=125.75 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|.|+||+.+|+++.++|++++||.+||++|+.+.| +|++.|||+|+|+.|+|+++|.+|+|++|++|||+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999988653
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=112.68 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=63.3
Q ss_pred CEEEEEeCCCCEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCchhhcCCCCCCEEEE
Q 019817 1 MKLTVKTLKGSHF--EI-RVQPSDTVMAVKKNIEDV-QGKDNYPCGQQLLIHN--GKVLKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 1 M~I~Vkt~~g~~~--~i-~V~~~~TV~dLK~~I~~~-~g~~~ip~~~qrLi~~--Gk~L~D~~tL~d~gI~~g~~I~v 72 (335)
|+|+||++.|+.+ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|++|++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999876
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.9e-14 Score=113.02 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~--~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|.++++.+.|+.+.|+|++++||.+||.+|++++| +|+++|||+| .|+ |+|+++|++|+|+.|++|||++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 56677789999999999999999999999999999 9999999996 556 999999999999999999997653
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.46 E-value=1.2e-13 Score=130.47 Aligned_cols=73 Identities=41% Similarity=0.608 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+||+++|+.+.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|++|.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.46 E-value=7.2e-14 Score=108.48 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=63.8
Q ss_pred EEEEEe--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCchhhcCCCCCCEEEE
Q 019817 2 KLTVKT--LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-------NGKVLKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 2 ~I~Vkt--~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~-------~Gk~L~D~~tL~d~gI~~g~~I~v 72 (335)
+|.|.. .+.+.+++.+++++||.+||.+|+.++| +|++.||||| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 455543 3556788999999999999999999999 9999999997 488999999999999999999999
Q ss_pred EeecC
Q 019817 73 MLSKS 77 (335)
Q Consensus 73 v~~~~ 77 (335)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97643
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.45 E-value=1.2e-13 Score=111.40 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCchhhcCC
Q 019817 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-----------V----LKDETTLADNKV 64 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~-~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk-----------~----L~D~~tL~d~gI 64 (335)
|+|+||+.+|+. .|+|+ +++||.+||++|+.++| +|++.|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999976 79999 99999999999999999 9999999999998 4 588999999999
Q ss_pred CCCCEEEEEee
Q 019817 65 SEDGFLVVMLS 75 (335)
Q Consensus 65 ~~g~~I~vv~~ 75 (335)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999999865
No 86
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.45 E-value=4.4e-14 Score=100.60 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=45.2
Q ss_pred cCCcccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 286 NVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 286 ~lt~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
.|++.|.++|+.|++|||++++|++|+.+|++|.|+|++|||+|++-.
T Consensus 14 ~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 14 MLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp TCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred hhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 478999999999999999999999999999999999999999998743
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.44 E-value=3.3e-13 Score=106.66 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=62.5
Q ss_pred CEEEEEeCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCchhhcCCCCCCEEEE
Q 019817 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GK---VL-KDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 1 M~I~Vkt~~g~--~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~--Gk---~L-~D~~tL~d~gI~~g~~I~v 72 (335)
++|+|++..++ .++++|++++||.+||++|+.++| +|++.|||+|. |+ .| +|+++|++|||++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 36788876654 789999999999999999999999 99999999998 55 34 8999999999999999999
Q ss_pred E
Q 019817 73 M 73 (335)
Q Consensus 73 v 73 (335)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 88
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.44 E-value=3.2e-14 Score=107.02 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 334 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~~ 334 (335)
.+.+.|++|++|||++.+|++||++|++|.++|++|||+|.+|..
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSSC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 467889999999999999999999999999999999999988753
No 89
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=5.7e-13 Score=105.67 Aligned_cols=71 Identities=17% Similarity=0.047 Sum_probs=62.6
Q ss_pred EEEEEeCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---e----cCCCCchhhcCCCCCCEEEE
Q 019817 2 KLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK---V----LKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 2 ~I~Vkt~~g--~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk---~----L~D~~tL~d~gI~~g~~I~v 72 (335)
+|.|++... +.++++|++++||.+||.+|+.++| +|++.|||+|.|+ . ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 577776544 4789999999999999999999999 9999999999883 3 48899999999999999999
Q ss_pred Eee
Q 019817 73 MLS 75 (335)
Q Consensus 73 v~~ 75 (335)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 90
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=8.2e-13 Score=104.11 Aligned_cols=73 Identities=22% Similarity=0.175 Sum_probs=63.7
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhcCCCCCCEEEE
Q 019817 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 1 M~I~Vkt~~g~-~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~G---k~----L~D~~tL~d~gI~~g~~I~v 72 (335)
|+|+|+..... .++++|++++||.+||.+|+...| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778876553 688999999999999999999999 999999999986 43 58999999999999999999
Q ss_pred Eeec
Q 019817 73 MLSK 76 (335)
Q Consensus 73 v~~~ 76 (335)
+...
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.37 E-value=8.7e-13 Score=102.02 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=63.5
Q ss_pred CEEEEEeCCCCEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GKVLK---DETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~-V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~--Gk~L~---D~~tL~d~gI~~g~~I~vv~ 74 (335)
|+|+||+.+|+. .+. |++++||.+||.+|++..| +++++|||+|+ +|.|. |+++|++|||++|++|||..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999965 477 9999999999999999999 99999999987 48874 67899999999999999864
Q ss_pred e
Q 019817 75 S 75 (335)
Q Consensus 75 ~ 75 (335)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.36 E-value=6e-13 Score=89.85 Aligned_cols=39 Identities=31% Similarity=0.546 Sum_probs=37.2
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
+.++|++|++|||++++|++||.+|++|.++|++|||+|
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 458899999999999999999999999999999999987
No 93
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.36 E-value=6.5e-14 Score=123.50 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|||||+|++|+|+.+|+ ++++|||+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999998 89999999987643
No 94
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=2.6e-12 Score=101.33 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|+|+|++.+|+.+.+.|.+++++..||++++++.| ++++.+||+|.|+.|.++.|+++|++++||+|+|+.+....
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 67999999999999999999999999999999999 99999999999999999999999999999999999987654
No 95
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.31 E-value=5.8e-12 Score=103.83 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=64.2
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhcCCCCCCEEEE
Q 019817 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 1 M~I~Vkt~~g~-~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~G---k~----L~D~~tL~d~gI~~g~~I~v 72 (335)
|+|+|++..+. .+.++|++++||.+||.+|+..+| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 36778876553 688999999999999999999999 999999999987 43 48899999999999999999
Q ss_pred EeecC
Q 019817 73 MLSKS 77 (335)
Q Consensus 73 v~~~~ 77 (335)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 97543
No 96
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.31 E-value=9.5e-12 Score=93.11 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| +++..+||+|.|+.|.++.|+++|++++||+|+|+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999873
No 97
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.30 E-value=2.6e-12 Score=93.78 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
.+.++|++|++|||++.+|++||++|++|.++|++|||+|..+.
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 46789999999999999999999999999999999999987654
No 98
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.4e-11 Score=96.50 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=71.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| +++..+||+|.|+.|.++.|+++|++.+||+|+|+.....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 99
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=3.8e-12 Score=121.39 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi---~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+|| ++|++|.|+|++++||.+||++|++.+| +|+++|||| |+||.|+|+.+|++|||++|++|+||.+..
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 578899 5899999999999999999999999999 999999999 899999999999999999999999996543
No 100
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.28 E-value=4.8e-12 Score=85.40 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~gi 195 (335)
.++.|++|++|| |++++|++||++++||+++|++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 468999999999 9999999999999999999999999985
No 101
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.26 E-value=2.7e-12 Score=94.01 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=40.7
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLACDR-NEELAANYLLENAGDFE 334 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~acdk-nee~Aan~Lf~~~~d~~ 334 (335)
+.+.|++|++|||++..|++||++|++ |+|+|++|||+|++|.+
T Consensus 19 ~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 19 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 346799999999999999999999997 99999999999998865
No 102
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.26 E-value=2.9e-11 Score=92.15 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=67.0
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~-~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
|+|+|++.+|+ .+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+.+|++.+||+|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 899999999999999999999999 99999999999999999999999999999999986
No 103
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.23 E-value=3.1e-11 Score=94.92 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|.|+|++.+|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+.+|++.+||+|+|+.+..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889999999999999999999999999999999 999999999999999999999999999999999998754
No 104
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.23 E-value=2.2e-11 Score=91.36 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 019817 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGIPET 198 (335)
Q Consensus 150 ~~~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~giP~~ 198 (335)
...|++.|++|++|| | +++.+++||+++++|+++|++||++|+|+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 356889999999999 9 789999999999999999999999998764
No 105
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.23 E-value=4.8e-12 Score=92.65 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHhCCCCc
Q 019817 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPET 198 (335)
Q Consensus 150 ~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~-~~~~A~~~L~~giP~~ 198 (335)
+...++.|++|++|| |++++|++||++++| |+++|++||++|+++.
T Consensus 6 ~~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 6 SGSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 344567899999999 999999999999988 9999999999998765
No 106
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.22 E-value=3.3e-11 Score=96.64 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|+|+|++.+|+.+.|.|..++++..|+..++++.| +++..+||+|.|+.|.++.|+.+|++.+||+|+|+.+...
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 107
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.22 E-value=1.2e-11 Score=92.66 Aligned_cols=47 Identities=38% Similarity=0.528 Sum_probs=43.0
Q ss_pred cCCcccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 019817 286 NVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 332 (335)
Q Consensus 286 ~lt~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d 332 (335)
+.+++..+.|++|++|||++++|++||.+|++|+++|++|||++.+.
T Consensus 24 ~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 45677889999999999999999999999999999999999998653
No 108
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.22 E-value=6.5e-12 Score=92.02 Aligned_cols=44 Identities=30% Similarity=0.435 Sum_probs=40.4
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLAC-DRNEELAANYLLENAGDFE 334 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~ac-dknee~Aan~Lf~~~~d~~ 334 (335)
+.+.|++|++|||++..|++||++| ++|+|+|++|||+|.+|.+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 9 ELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 4567999999999999999999999 7999999999999988754
No 109
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=93.54 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDR-NEELAANYLLENAGDFE 334 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdk-nee~Aan~Lf~~~~d~~ 334 (335)
.+.+.|++|++|||++..|++||++|++ |+|+|++|||+|.+|.+
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 4678999999999999999999999996 89999999999988754
No 110
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=95.36 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 334 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~~ 334 (335)
-+.+.|++|++|||++..|++||++|++|+|.|+||||+|++|.+
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 467899999999999999999999999999999999999988754
No 111
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.20 E-value=7.3e-12 Score=91.69 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=40.0
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLACDR-NEELAANYLLENAGDFE 334 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~acdk-nee~Aan~Lf~~~~d~~ 334 (335)
+.+.|++|++|||++..|++||++|++ |+|.|.||||+|.+|.+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 9 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 446799999999999999999999976 99999999999988754
No 112
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.20 E-value=1.6e-11 Score=94.70 Aligned_cols=44 Identities=32% Similarity=0.376 Sum_probs=41.6
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 334 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~~ 334 (335)
+.++|++|++|||+++.|++||++|++|+|+|++|||+|.+|.|
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 46789999999999999999999999999999999999998876
No 113
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.4e-12 Score=91.15 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=41.8
Q ss_pred cccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 019817 289 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 334 (335)
Q Consensus 289 ~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~~ 334 (335)
+.+.+.|++|++|||++..|++||++|++|.|+|++|||+|..|.+
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~d 52 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLD 52 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcc
Confidence 3567899999999999999999999999999999999999977653
No 114
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.19 E-value=1.6e-11 Score=87.43 Aligned_cols=42 Identities=29% Similarity=0.509 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~gi 195 (335)
+..++.|.+|++|| |+++++++||++++||+|||++|||+|.
T Consensus 17 ~se~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 17 PSERQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 44578899999999 9999999999999999999999999994
No 115
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.18 E-value=2.8e-11 Score=90.65 Aligned_cols=43 Identities=35% Similarity=0.432 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP 196 (335)
+.+++.|++|++|| |++++|++||++++||+++|++||++|..
T Consensus 27 ~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 27 AASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 56789999999999 99999999999999999999999999944
No 116
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.17 E-value=3.7e-11 Score=84.70 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 019817 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGIP 196 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~giP 196 (335)
..|++.|++|++|| | +++.|++||++++||+++|++||++|.+
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 45789999999999 9 9999999999999999999999999864
No 117
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.17 E-value=2.8e-11 Score=88.24 Aligned_cols=43 Identities=30% Similarity=0.425 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~~ 198 (335)
.++.|++|++|| |++++|++||++++||+++|++||++|..+.
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 478999999999 9999999999999999999999999995544
No 118
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.17 E-value=3.3e-11 Score=79.75 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHh
Q 019817 289 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLL 327 (335)
Q Consensus 289 ~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf 327 (335)
++..+.|++|++|||++++|++||.+|++|.++|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 356779999999999999999999999999999999997
No 119
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.16 E-value=2.1e-11 Score=84.54 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 289 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 289 ~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
++..+.|++|++|||++++|+.||.+|++|.++|++|||++.
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 456789999999999999999999999999999999999863
No 120
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=89.90 Aligned_cols=44 Identities=34% Similarity=0.609 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 019817 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198 (335)
Q Consensus 152 ~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~~ 198 (335)
.+++.|++|++|| |++++|++||++++||+++|++||++|+++.
T Consensus 8 ~~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 8 PPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CCHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3578999999999 9999999999999999999999999997764
No 121
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.16 E-value=6e-11 Score=96.03 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|.|+|++.+|+.+.+.|..++++..|+..++++.| +++..+||+|.|+.|.++.|+.+|++.+||+|+|+.....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987543
No 122
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.8e-11 Score=90.40 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHhCCCCcc
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPETA 199 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~-~~~~A~~~L~~giP~~~ 199 (335)
.++.|++|++|| |++++|++||++++| |+++|++||++|+++..
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 478999999999 999999999999987 79999999999987653
No 123
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.15 E-value=1e-10 Score=93.99 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|+|+|++ +|+.+.+.|..++++..|+..++++.| +++..+||+|.|+.|.++.|..+|++.+||+|+|+.+..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788999 999999999999999999999999999 999999999999999999999999999999999998754
No 124
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.6e-11 Score=83.33 Aligned_cols=40 Identities=38% Similarity=0.588 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
-+.+.|++|++|||++..|++||++|+ |.|.|++|||+|+
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp SCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 357889999999999999999999996 9999999999985
No 125
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.13 E-value=7.9e-11 Score=82.65 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
..+++.|++|++|| | +++.|++||++++||+++|++||++|
T Consensus 10 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56789999999999 9 99999999999999999999999987
No 126
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.12 E-value=3.3e-11 Score=88.24 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCHHHHHHHHHhCCCCc
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAA-YNNPERAVDYLYSGIPET 198 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~-~~~~~~A~~~L~~giP~~ 198 (335)
++.|++|++|| |++++|++||+++ ++|+++|++||++|+++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 46899999999 9999999999999 589999999999998765
No 127
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.12 E-value=6.8e-11 Score=82.98 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 292 QEAIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 292 ~~aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
.+.|++|++||| +++.|++||.+|++|.++|++|||+|+
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 578999999999 999999999999999999999999974
No 128
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.11 E-value=9.1e-11 Score=80.22 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 152 DLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 152 ~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.|++.|++|++|| | +++.+++||+++++|+++|++||++|
T Consensus 6 ~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 6 RYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4788999999999 9 57888999999999999999999986
No 129
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.11 E-value=4.8e-11 Score=87.34 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHhCCCC
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPE 197 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~~~-~~~~A~~~L~~giP~ 197 (335)
++.|++|++|| |++++|++||++++| |+++|++||++|+.+
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 46899999999 999999999999998 999999999999654
No 130
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=124.39 Aligned_cols=109 Identities=22% Similarity=0.395 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHhCCCCcccccCCCCCCCCcchhhcccCCCCCCCCCCCCC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSS 231 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~-~~~~A~~~L~~giP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (335)
.+++|++|++|| |++.+|++||..+.| +.+.|++||+.|+.+..-. .|... +.
T Consensus 652 d~~~l~~L~~mG---f~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~-~p~~~----~~------------------ 705 (854)
T 3ihp_A 652 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFA-NPLIL----PG------------------ 705 (854)
T ss_dssp -CHHHHHHHHHT---CCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGG-SCCCC----C-------------------
T ss_pred CHHHHHHHHhcC---CCHHHHHHHHhhcCCCchHHHhHHHhhccCccccc-ccccc----cc------------------
Confidence 468999999999 999999999999977 6999999999998765211 11100 00
Q ss_pred CCCCcchhcccCCCCCCCCcHHHhhcchhhhcCCCCCCCCCCCCCCCCCCCccccCCcccHHHHHHHHHCCCChHHHHHH
Q 019817 232 PLNMFPQETLSGAPAGGLGSLDFLRNNQQLINEPVDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEA 311 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~lr~np~~~~e~~~~~~~~~~~~~~~~~~~~~~lt~ee~~aI~rL~~lGF~~~~~i~A 311 (335)
...... .. . .....+.+.|..|.+|||++.++++|
T Consensus 706 ---------~~~~~s-------------------------------~~----~-~~~~~~~e~i~~l~~mGf~~~~a~~a 740 (854)
T 3ihp_A 706 ---------SSGPGS-------------------------------TS----A-AADPPPEDCVTTIVSMGFSRDQALKA 740 (854)
T ss_dssp ----------------------------------------------------------CCHHHHHHHHTTTCCHHHHHHH
T ss_pred ---------cccccc-------------------------------cc----c-ccCCCCHHHHHHHHHcCCCHHHHHHH
Confidence 000000 00 0 00124568899999999999999999
Q ss_pred HHHhCCCHHHHHHHHhccCCC
Q 019817 312 FLACDRNEELAANYLLENAGD 332 (335)
Q Consensus 312 y~acdknee~Aan~Lf~~~~d 332 (335)
+.+|++|.|+|++|||+|++|
T Consensus 741 L~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 741 LRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHhhhcCccc
Confidence 999999999999999998765
No 131
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.09 E-value=8.6e-11 Score=90.54 Aligned_cols=45 Identities=29% Similarity=0.407 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhC-CCHHHHHHHHhccCCCCC
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACD-RNEELAANYLLENAGDFE 334 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acd-knee~Aan~Lf~~~~d~~ 334 (335)
.+.++|++|++|||++..|++||++|. +|+++|+||||+|.+|.+
T Consensus 28 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 28 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 467899999999999999999988774 799999999999988754
No 132
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.08 E-value=1.3e-10 Score=88.82 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=40.2
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
..+.|++|++|||++.+|++||.+|++|.++|++|||+|.++.
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~i 71 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSL 71 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 5788999999999999999999999999999999999997743
No 133
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.07 E-value=3.4e-10 Score=89.28 Aligned_cols=72 Identities=25% Similarity=0.247 Sum_probs=61.9
Q ss_pred EEEEEe---CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCchhhcCCCCCCEE
Q 019817 2 KLTVKT---LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG------KV-L-KDETTLADNKVSEDGFL 70 (335)
Q Consensus 2 ~I~Vkt---~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~G------k~-L-~D~~tL~d~gI~~g~~I 70 (335)
+|+|++ .+|+.+.+.+..++||.+||.+|+..+| +|+..|||+|.+ .. | +|.++|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566775 4678899999999999999999999999 999999999873 22 5 67789999999999999
Q ss_pred EEEeec
Q 019817 71 VVMLSK 76 (335)
Q Consensus 71 ~vv~~~ 76 (335)
||+...
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998743
No 134
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=89.30 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~~ 198 (335)
.++.|++|++|| |++++|++||+++++|+++|++||++|+++.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 578999999999 9999999999999999999999999997654
No 135
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.06 E-value=1.5e-10 Score=81.52 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 292 QEAIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 292 ~~aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
.+.|++|++||| +++.|++||.+|++|.++|++|||++.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 457999999999 999999999999999999999999985
No 136
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=79.75 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
+++.|++|++|| |++++|++||+++ ||+++|++||++|
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 578999999999 9999999999999 5999999999987
No 137
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.05 E-value=1.9e-10 Score=88.65 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCHHHHHHHHHhCCCCc
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAY-NNPERAVDYLYSGIPET 198 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~-~~~~~A~~~L~~giP~~ 198 (335)
.++.|++|++|| |++++|++||++++ +|+++|++|||+|+++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 99999999999997 59999999999998765
No 138
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.05 E-value=2.2e-10 Score=75.76 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~ 192 (335)
+++++.|++|++|| |++++|++||+.+++|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45788999999999 9999999999999999999999995
No 139
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.04 E-value=2.5e-10 Score=85.70 Aligned_cols=42 Identities=17% Similarity=0.451 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~ 197 (335)
.++.|++|++|| |++++|++||++++||+++|++||++|..+
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 478999999999 999999999999999999999999999543
No 140
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=99.04 E-value=2.5e-10 Score=78.64 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 293 EAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 293 ~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
+.|++|++|||+|+.|++|+..|++|.|+|+|+|++-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 7999999999999999999999999999999999874
No 141
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.04 E-value=2.9e-10 Score=86.93 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.++.|++|++|| |++++|++||++++||+++|++|||+|
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 478999999999 999999999999999999999999995
No 142
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.03 E-value=2.8e-10 Score=83.49 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 019817 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGIPET 198 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~giP~~ 198 (335)
..|+..|.+|.+|| | +++.+++||+++++|+++||+||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 44788999999999 9 566669999999999999999999998764
No 143
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.00 E-value=4.2e-10 Score=80.59 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
..+++.|++|++|| | +++.+++||+++++|+++|++||++|
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45788999999999 9 68889999999999999999999998
No 144
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.95 E-value=1.6e-10 Score=79.42 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~ 197 (335)
++.+++|++|++|| |++.+|++||.++++|.++|++|||+|+.+
T Consensus 2 ~~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d 45 (47)
T 1dv0_A 2 SQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQNFD 45 (47)
T ss_dssp -CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCCCC
T ss_pred cchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCcCC
Confidence 34578999999999 999999999999999999999999999654
No 145
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=6.9e-10 Score=76.80 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=35.9
Q ss_pred HHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 293 EAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 293 ~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
..|++|++|||+|++|++|+..|++|.|+|+|+|++..
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 56999999999999999999999999999999998864
No 146
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.93 E-value=1.3e-09 Score=74.49 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 292 QEAIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 292 ~~aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
.+.|++|++||| +++.+++|+.+|++|.++|++|||++
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 467999999999 57889999999999999999999975
No 147
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.89 E-value=1.8e-09 Score=76.28 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCCCh-HHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 292 QEAIQRLEAMGFDR-ALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 292 ~~aI~rL~~lGF~~-~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
.+.|++|++|||.. +.+++||.+|+.|.++|++|||++++..
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 56899999999955 5579999999999999999999997643
No 148
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=8.7e-09 Score=83.74 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
|+|+|++.+|+.+.+.|..++++..|+...+++.| +++..+||+|.|+.|.++.|..++++.+||+|.|+...
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46888888899999999999999999999999999 99999999999999999999999999999999998754
No 149
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.88 E-value=2.3e-09 Score=80.33 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 292 QEAIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 292 ~~aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
.+.|++|++||| +++.+++||.+|++|.++|++|||++.+..
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 567999999999 789999999999999999999999997654
No 150
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.87 E-value=3.2e-09 Score=81.81 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~ 197 (335)
++.|++|++|| |++++|++||+.+++|+++|++||++|.-+
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 78999999999 999999999999899999999999999544
No 151
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.87 E-value=2e-09 Score=76.99 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 292 QEAIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 292 ~~aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
.+.|++|++||| +++.+++||.+|+.|.++|++|||+++
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 468999999999 688999999999999999999999985
No 152
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.87 E-value=2.4e-09 Score=75.56 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHcCCCCCCH-HHHHHHHHHhcCCHHHHHHHHHhCC
Q 019817 152 DLEQTIQQIMDMGGGTWDK-ETVTRALQAAYNNPERAVDYLYSGI 195 (335)
Q Consensus 152 ~~~~~v~~l~~mG~~~f~~-~~~~~Al~~~~~~~~~A~~~L~~gi 195 (335)
.|++.|++|++|| |.+ +.+++||+++++|+++|++||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4688999999999 955 5579999999999999999999884
No 153
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.84 E-value=2.7e-09 Score=73.93 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=36.9
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
-.+.|.+|++|||+++.|++|+..|++|.++|+|.|+|-.
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998853
No 154
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.83 E-value=3.9e-09 Score=77.38 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 292 QEAIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 292 ~~aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
...|++|.+||| +++.+++|+++|++|.++|++|||++..+.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 568999999998 555669999999999999999999998764
No 155
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.78 E-value=6.6e-09 Score=85.94 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP 196 (335)
.++.|++|++|| |++++|++||++++||+++|++||++|++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 578999999999 99999999999999999999999999987
No 156
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.72 E-value=1.6e-08 Score=67.48 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 292 QEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 292 ~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
..+|.+|++|||+++.|++|+-.|++|.|+|+|.|++..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 468999999999999999999999999999999998753
No 157
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.66 E-value=2e-08 Score=82.04 Aligned_cols=45 Identities=24% Similarity=0.500 Sum_probs=43.3
Q ss_pred cCCcccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 286 NVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 286 ~lt~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
.|+++|++.|.+|++|||++..|++|+++|++|.+.|.||||+|+
T Consensus 3 ~l~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 3 HMSPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp CSCHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 479999999999999999999999999999999999999999985
No 158
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=9.4e-08 Score=84.90 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~~ 80 (335)
++|+|+ .+|+.+.+.|..++++..||+..+++.| ++...+||+|.|+.|.++.|..++++.+||+|+|+.......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467787 4899999999999999999999999999 999999999999999999999999999999999998876544
No 159
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.63 E-value=4.5e-08 Score=67.40 Aligned_cols=37 Identities=38% Similarity=0.451 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~ 193 (335)
++.|++||+|| |+|+++++||+.++||++.|.++|++
T Consensus 12 ~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 47899999999 99999999999999999999999986
No 160
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.62 E-value=4.4e-08 Score=78.52 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 019817 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGI 195 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~gi 195 (335)
..+++.|++|.+|| | +++++++||+++++|+++||+||++|.
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 35688999999999 9 678999999999999999999999984
No 161
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.60 E-value=7.4e-08 Score=84.43 Aligned_cols=75 Identities=11% Similarity=0.172 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
|.|+|+ .+|+.+.+.|..++++..|++..+++.| +++..+||+|.|+.|.++.|..++++.+||+|.|++.....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 357776 4889999999999999999999999999 99999999999999999999999999999999999876543
No 162
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.57 E-value=4.3e-08 Score=74.71 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=57.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV---L--KDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~---L--~D~~tL~d~gI~~g~~I~vv 73 (335)
|.|.||+.+| .+.|+|++++||.+||.+|.+.++ ++++.+.|.++-.. | ..+.+|+++||++||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998776 678889999999999999999999 88888777654432 3 46789999999999999874
No 163
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.57 E-value=9.6e-08 Score=63.77 Aligned_cols=42 Identities=31% Similarity=0.425 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 150 ~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
|+.++..|..||+|| |+++++++||-.+.||.+.|-+.|.+-
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 466899999999999 999999999999999999999999753
No 164
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.54 E-value=1e-07 Score=65.93 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.+..|++||+|| |+|++|++||..++||++.|.++|++-
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 356799999999 999999999999999999999999864
No 165
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.52 E-value=6.5e-07 Score=67.10 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=65.2
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
.+.+|+.+...+.+.|..+.+|.+|-+..+.+.| ++.+ .++|+|.|..|+.+.++.+|++.+||.|-+|+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4567888888899999999999999999999999 9999 99999999999999999999999999999885
No 166
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-07 Score=65.22 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.|+.|..||+|| |+++.+++||..+.||++.|-|+|++-
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 578999999999 999999999999999999999999986
No 167
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.45 E-value=1.9e-07 Score=74.88 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 019817 292 QEAIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLENAG 331 (335)
Q Consensus 292 ~~aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~~~ 331 (335)
.+.|++|.+||| +++.+++||.+|+.|+++|++|||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 678999999999 6789999999999999999999999854
No 168
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.35 E-value=2.3e-06 Score=67.48 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=64.1
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~-~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
+.|+|+..+|+ .+.+.|..+.++..|....+++.| +++...||+|.|..|..+.|..++++.+||+|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777885 788999999999999999999999 88999999999999999999999999999999886
No 169
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.34 E-value=2.2e-07 Score=89.95 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
+..++|.+|++|||+|.+|+.|+++|++|.++|++|||++..|.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 210 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 46778999999999999999999999999999999999987654
No 170
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.30 E-value=7.9e-08 Score=85.36 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
|.|+| +.+|+.+.+.|..++++..|++..+++.| +++..+||+|.|+.|.++.|..++++++||+|.|+.....
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 56777 67889999999999999999999999999 9999999999999999999999999999999999976554
No 171
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.24 E-value=1.5e-06 Score=68.82 Aligned_cols=45 Identities=29% Similarity=0.584 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 019817 151 NDLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198 (335)
Q Consensus 151 ~~~~~~v~~l~~m-G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP~~ 198 (335)
+++++.|+.|++| | |+++.|+.||..+++|+++|+++|++|.++.
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~ 82 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPDT 82 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSSC
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 4568999999999 9 9999999999999999999999999998753
No 172
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.24 E-value=1.3e-06 Score=60.57 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHh
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS 193 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~-~~~~A~~~L~~ 193 (335)
....+++|++|| |+++.+.+||+.++| +++.|++||..
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 457799999999 999999999999988 89999999974
No 173
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.22 E-value=1.4e-06 Score=68.89 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHC-CCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 019817 290 AEQEAIQRLEAM-GFDRALVIEAFLACDRNEELAANYLLENAGD 332 (335)
Q Consensus 290 ee~~aI~rL~~l-GF~~~~~i~Ay~acdknee~Aan~Lf~~~~d 332 (335)
+-.+.|++|++| ||++++|+.||..|+.|++.|+++||+...|
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 446789999999 9999999999999999999999999998754
No 174
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.18 E-value=1.2e-06 Score=77.90 Aligned_cols=40 Identities=40% Similarity=0.474 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
+-.+.|++|++|||+|++|++|+..|+.|+++|.+|||++
T Consensus 162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4477899999999999999999999999999999999985
No 175
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.17 E-value=1e-05 Score=63.11 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=66.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
+.|+|+ .+|..+.+.|..+.....|.+..+.+.| +.++.+|++|.|..+.++.|-.++++.+||+|-+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 357888 4788999999999999999999999999 99999999999999999999999999999999998754
No 176
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.02 E-value=7.6e-06 Score=57.20 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 150 ~~~~~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
...|...+.+|.+|| | +++..++||+.+++|+++||++|+..
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 455788999999999 9 99999999999999999999999875
No 177
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.00 E-value=5.2e-06 Score=73.78 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=40.4
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 148 ~~~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
..+..+++.|++|++|| |+|++|+.||..+++|.++|+|||+++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 34567899999999999 999999999999999999999999864
No 178
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.96 E-value=2e-05 Score=70.44 Aligned_cols=73 Identities=11% Similarity=0.184 Sum_probs=67.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
.|+|++ +|+.+.+.|..++++..|++..+++.| ++...+||+|.|+.+.++.|..++.+.++|+|.++.....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 567776 778888999999999999999999999 9999999999999999999999999999999999876654
No 179
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.88 E-value=6.1e-05 Score=58.80 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=52.6
Q ss_pred EEEEeC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCchhhcCCC-CCCEEEEEe
Q 019817 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL--KDETTLADNKVS-EDGFLVVML 74 (335)
Q Consensus 3 I~Vkt~-~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L--~D~~tL~d~gI~-~g~~I~vv~ 74 (335)
|+|=.+ .+..+.+.|.++.||..||++|++++| +++..|+|+|.||.| +.++....|--. ...-|+|+.
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 344444 466788999999999999999999999 999999999999875 556666666433 334555543
No 180
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.87 E-value=1.2e-05 Score=56.14 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=38.6
Q ss_pred cccHH--HHHHHHHCCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 289 PAEQE--AIQRLEAMGF-DRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 289 ~ee~~--aI~rL~~lGF-~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
+||+. .+.+|.+||| +++..++|+..|+.|++.|++.|+.....+
T Consensus 5 ~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 5 SSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp SCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred HHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 34544 5889999999 999999999999999999999999875543
No 181
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.87 E-value=7.1e-05 Score=57.79 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
|.|+|...+++.+.|.|.++.++.++-+..++++| +.+++..|.|++|.|+-+..+.-.||-+|..|.++.+.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67999999999999999999999999999999999 889999999999999889999999999999999986543
No 182
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.80 E-value=4.4e-05 Score=58.05 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=59.1
Q ss_pred EEEEEe--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhcCCCCCCEEEE
Q 019817 2 KLTVKT--LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 2 ~I~Vkt--~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~--~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~v 72 (335)
.|+|.. ..++.|.+.++...||+.|++.+.+.++....+. -.+|+.-++.+|.++..|.+|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 5789999999999999999999999998331111 2568888999999999999999999999876
No 183
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.80 E-value=1.9e-05 Score=68.19 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 150 ~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.++.+++|++|++|| |+|+.|++|+.+|..|.+.|.+|||++
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 356788999999999 999999999999999999999999986
No 184
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.79 E-value=3e-06 Score=81.36 Aligned_cols=74 Identities=11% Similarity=0.192 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~ 78 (335)
+.|+|++ +|+.+.+.|..++++..|++..+++.| ++++.+|++|.|+.|.++.|..++++++||+|.|+.....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3567776 677888999999999999999999999 9999999999999999999999999999999999987554
No 185
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.78 E-value=4.6e-05 Score=62.83 Aligned_cols=69 Identities=26% Similarity=0.237 Sum_probs=57.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-------------------------------------QQ 44 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~-------------------------------------~q 44 (335)
.|+|+.++|...++.|+.+.||.+++..|+.+.| ++.. .+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3889999999999999999999999999999999 5533 33
Q ss_pred EEEe--CCeecCCCCchhhcCCCCCCEEEEE
Q 019817 45 LLIH--NGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 45 rLi~--~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
||-. .+..|+++++|.++||.++++|.|-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4421 2367888999999999999997653
No 186
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.73 E-value=2.7e-05 Score=71.52 Aligned_cols=40 Identities=38% Similarity=0.433 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 290 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 290 ee~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
+-.+.|++|++|||+++.|++|+..|+.|+++|.++||++
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4577899999999999999999999999999999999974
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.52 E-value=1.3e-05 Score=77.92 Aligned_cols=74 Identities=9% Similarity=0.168 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeecCCC
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~~~ 79 (335)
.|+|+. +|+.+.+.|..++++..|++..+++.| ++...+||+|.|+.|.++.|..++++++||+|.++......
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 466666 677788999999999999999999999 99999999999999999999999999999999999876543
No 188
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.35 E-value=0.00091 Score=50.74 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=58.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCchhhcCCCCCCEEEEE
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK---DETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--~~Gk~L~---D~~tL~d~gI~~g~~I~vv 73 (335)
+|.||..+|+.+.-.+..++||.+|...|.. .+ .+....+|+ |-.|.|. .+++|.++|+.++.+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999988888999999999999987 56 667888998 5678883 4689999999999888874
No 189
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.16 E-value=0.0048 Score=49.25 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=59.7
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCchhhcCCCCCCEEEEEee
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--D-ETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--~~Gk~L~--D-~~tL~d~gI~~g~~I~vv~~ 75 (335)
+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|.++|+.+..+|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 5889999999999999999999999999999877 656677886 5678885 3 68999999998877776543
No 190
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.09 E-value=0.00059 Score=47.21 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHCCCChHHHHHHHHHhCC-CHHHHHHHHhccC
Q 019817 289 PAEQEAIQRLEAMGFDRALVIEAFLACDR-NEELAANYLLENA 330 (335)
Q Consensus 289 ~ee~~aI~rL~~lGF~~~~~i~Ay~acdk-nee~Aan~Lf~~~ 330 (335)
++.+.-++.|.+|||++..|..|+..+++ ..+-|.+||+.-.
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 45566799999999999999999999876 8999999997643
No 191
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.08 E-value=0.00051 Score=63.03 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=40.3
Q ss_pred cCCCCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 019817 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (335)
Q Consensus 147 ~~~~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~ 193 (335)
-..++.+++.|++|++|| |++++++.||...+.|.++|+++|+.
T Consensus 209 ~~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 209 PVSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp SCCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 344667899999999999 99999999999999999999999985
No 192
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.82 E-value=0.0014 Score=46.64 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHC--CCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 019817 290 AEQEAIQRLEAM--GFDRALVIEAFLACDRNEELAANYLLENAGDF 333 (335)
Q Consensus 290 ee~~aI~rL~~l--GF~~~~~i~Ay~acdknee~Aan~Lf~~~~d~ 333 (335)
...+.|+.|.+| .+++..+..+|.+|++|.+.|.|.||+..++.
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 456889999999 78999999999999999999999999876554
No 193
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.68 E-value=0.0058 Score=49.93 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=58.8
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCchhhcCCCCCCEEEEEe
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVL--KD-ETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--~~Gk~L--~D-~~tL~d~gI~~g~~I~vv~ 74 (335)
+|.||..+|+.+.-.+..++||.+|...|... + .+....+|+ |-.|.| .| +++|.++|+.+...|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 58899999999888999999999999999876 6 666788887 668888 34 6899999999988888753
No 194
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=96.55 E-value=0.0036 Score=45.24 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 019817 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (335)
Q Consensus 155 ~~v~~l~~m-G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~ 193 (335)
+.|++|.+. | ....+|++||..+++|.+.|++||-.
T Consensus 11 ~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 679999997 7 99999999999999999999999964
No 195
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.35 E-value=0.03 Score=44.43 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=57.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--CCCchhhcCCCCCCEEEEEe
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--DETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--~~Gk~L~--D~~tL~d~gI~~g~~I~vv~ 74 (335)
+|.||..+|+.+.-.+..++||.+|...|... + ......+|+ |-.|.|. .++||.++||.+..+|+|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999999888888999999999999865 4 556678886 6678885 36899999999988887653
No 196
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0032 Score=67.06 Aligned_cols=43 Identities=35% Similarity=0.605 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP 196 (335)
...++.|..|.+|| |+.+++++||+++.||+++|++||+++..
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~~d 760 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHID 760 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence 34578999999999 99999999999999999999999999844
No 197
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=96.18 E-value=0.016 Score=48.98 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=32.8
Q ss_pred HHHHHHHHHCC-CChHHHHHHHHHhCCCHHHHHHHHh
Q 019817 292 QEAIQRLEAMG-FDRALVIEAFLACDRNEELAANYLL 327 (335)
Q Consensus 292 ~~aI~rL~~lG-F~~~~~i~Ay~acdknee~Aan~Lf 327 (335)
+..++.|+++| |++.+|++|+.+...|++.|..-|-
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 46799999999 8999999999999999999987763
No 198
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.06 E-value=0.021 Score=46.71 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=54.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhcCCCCCCEE
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD-ETTLADNKVSEDGFL 70 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--~~Gk~L~D-~~tL~d~gI~~g~~I 70 (335)
+|.||..+|+.+.-.+..++||.+|...|..... .+......|+ |-.|.|.| +.||.++|+.+..+|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~--~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP--AMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCS--GGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCc--CCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 5889999999999999999999999999988632 0345677886 66788965 689999999975443
No 199
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.60 E-value=0.013 Score=41.64 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~m--G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
...++.|++|.+| . ++++.+++.|++++||.++|++.|++-
T Consensus 7 ~~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SSCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3468999999999 6 899999999999999999999999986
No 200
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.51 E-value=0.0023 Score=57.32 Aligned_cols=38 Identities=37% Similarity=0.557 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 292 QEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 292 ~~aI~rL~~lGF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
.+.|++|++|||+++.|+.|+..|+.|++.|.+.||+.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 57899999999999999999999999999999999864
No 201
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.36 E-value=0.052 Score=40.10 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=47.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
|+|+||........+++....||.+|-+. .| +++...-+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 99999977555566899999999998754 67 8888887889999885544 2348988876
No 202
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.33 E-value=0.024 Score=38.65 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 153 LEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 153 ~~~~v~~l~~m--G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.++-|+.|++| . -+...++++|+++++|.++|++.|++.
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 46889999999 5 689999999999999999999999976
No 203
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.18 E-value=0.084 Score=40.01 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=57.6
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---CeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---GKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~---Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
+|.|....-++..+.|++..++.+|--.|+++.. +.++...|... +..|+=+++|.+|||++ |+.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5667777778888999999999999999999977 88989888753 46688899999999986 66665444
No 204
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.06 E-value=0.15 Score=40.70 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=46.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCC-------------CchhhcCCCC
Q 019817 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGKVLKDE-------------TTLADNKVSE 66 (335)
Q Consensus 10 g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLi~----~Gk~L~D~-------------~tL~d~gI~~ 66 (335)
+..+.+.|-..+||.++|+||-...-+. +| ++.+.|-+ .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4558888889999999999998765321 32 45666765 24666541 3789999999
Q ss_pred CCEEEEEe
Q 019817 67 DGFLVVML 74 (335)
Q Consensus 67 g~~I~vv~ 74 (335)
|++|.++.
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998864
No 205
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.72 E-value=0.042 Score=39.58 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.5
Q ss_pred HHHHHHHHC-CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 293 EAIQRLEAM-GFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 293 ~aI~rL~~l-GF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
+.|..|.+. |....+|.+||..|+.|.+.|..||-+.
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 668888877 9999999999999999999999999654
No 206
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.62 E-value=0.046 Score=39.75 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHC--CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 290 AEQEAIQRLEAM--GFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 290 ee~~aI~rL~~l--GF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
+..++|+.|.+| -+++..+..+|.+|++|.+.|.+-|++-.
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 457889999999 57899999999999999999999998743
No 207
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.62 E-value=0.15 Score=42.21 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=47.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhcCCCC
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSE 66 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLi~----~Gk-~L~D~-------------~tL~d~gI~~ 66 (335)
..+.+.|-..+||.++|+||-+...+. +| ++.+-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 458889999999999999999876533 33 34445544 234 36542 2899999999
Q ss_pred CCEEEEEeec
Q 019817 67 DGFLVVMLSK 76 (335)
Q Consensus 67 g~~I~vv~~~ 76 (335)
|.+|.++.+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999987654
No 208
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.48 E-value=0.079 Score=38.50 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 149 ~~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.+.++++.|++|.+|= -.++++.++..|+++++|.++|++-|++-
T Consensus 14 ~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4577899999999992 12899999999999999999999999874
No 209
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.069 Score=38.75 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=42.1
Q ss_pred ccCCcccHHHHHHHHHC-C-CChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 019817 285 INVTPAEQEAIQRLEAM-G-FDRALVIEAFLACDRNEELAANYLLENAG 331 (335)
Q Consensus 285 ~~lt~ee~~aI~rL~~l-G-F~~~~~i~Ay~acdknee~Aan~Lf~~~~ 331 (335)
-.|+.+..+.|.+.+++ | -+...|++.+..|+.|.|.|.+-.|++..
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred hhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 36788888999999998 8 88999999999999999999999998744
No 210
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.11 E-value=0.13 Score=37.72 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC-CCCc
Q 019817 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG-IPET 198 (335)
Q Consensus 148 ~~~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g-iP~~ 198 (335)
+++.+.+..|.++.++= -++.+..+.++|...++|+|++++.|+++ +|.+
T Consensus 8 ~~~~~l~s~I~qV~DLf-PdLG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~ 58 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL-PDLGEGFILACLEYYHYDPEQVINNILEERLAPT 58 (71)
T ss_dssp CSSHHHHHHHHHHHHHC-CSSCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTT
T ss_pred CcHHHHHHHHHHHHHHc-ccCCHHHHHHHHHHhCCCHHHHHHHHHccCCCHH
Confidence 35677899999999982 12789999999999888999999999998 5544
No 211
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.03 E-value=0.073 Score=36.24 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=36.6
Q ss_pred cHHHHHHHHHC--CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 019817 291 EQEAIQRLEAM--GFDRALVIEAFLACDRNEELAANYLLENAG 331 (335)
Q Consensus 291 e~~aI~rL~~l--GF~~~~~i~Ay~acdknee~Aan~Lf~~~~ 331 (335)
..+.|+.|.+| .-++..+..+|.+|++|.+.|++.|++-..
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 35779999999 789999999999999999999999998643
No 212
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=93.98 E-value=0.0097 Score=53.20 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 152 ~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.+++.|+.|++|| |+++.+++||...+.+.++|+|.|+.|
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp -------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 4578999999999 999999999999999999999999976
No 213
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.84 E-value=0.087 Score=37.54 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=40.8
Q ss_pred cCCcccHHHHHHHHHC-CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 019817 286 NVTPAEQEAIQRLEAM-GFDRALVIEAFLACDRNEELAANYLLENAG 331 (335)
Q Consensus 286 ~lt~ee~~aI~rL~~l-GF~~~~~i~Ay~acdknee~Aan~Lf~~~~ 331 (335)
.|+....+.|.+.+++ |-++..|++.+.+|+.|.|.|.+..|++..
T Consensus 10 ~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 10 AASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp SSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred hcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 4676778889999988 999999999999999999999999998754
No 214
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.77 E-value=0.23 Score=44.10 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=50.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCchhhcCCCCCCEEEEEeec
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLI--H-NG--KVLKD-ETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLi--~-~G--k~L~D-~~tL~d~gI~~g~~I~vv~~~ 76 (335)
+++.++..+||.+|+++++..++ ++.+ ..||- | .+ ..|.| +++|.+++|.++..|.|=++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8886 68884 4 33 34665 579999999999999987764
No 215
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.69 E-value=0.38 Score=34.70 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=44.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
|+|+|.... ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++||.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 566665322 22456777778999999875 5 5667777889999986554 578999998873
No 216
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=93.64 E-value=0.039 Score=49.18 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHHCCCChHHHHHHHHHhCCCHH
Q 019817 287 VTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 320 (335)
Q Consensus 287 lt~ee~~aI~rL~~lGF~~~~~i~Ay~acdknee 320 (335)
+--.+.+.|++|++|||+++.|++||..|+-++.
T Consensus 165 ~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~ 198 (215)
T 1tte_A 165 LYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSL 198 (215)
T ss_dssp CCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSC
T ss_pred hccccHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 3446789999999999999999999999998763
No 217
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=93.46 E-value=0.098 Score=45.87 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=33.9
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 019817 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (335)
Q Consensus 154 ~~~v~~l~~m-G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~ 193 (335)
-..|++|-++ | ...-+|++||..+++|.+.|++||-.
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4679999998 7 89999999999999999999999975
No 218
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=93.45 E-value=0.1 Score=34.50 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=35.9
Q ss_pred cHHHHHHHHHC-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 291 EQEAIQRLEAM-GFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 291 e~~aI~rL~~l-GF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
..+.|.+.+++ |-++..|++.+.+|+.|.+.|.+-.|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679998887 99999999999999999999999988864
No 219
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.32 E-value=0.27 Score=46.80 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=55.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCC-CCCCCCCeEEEe------CCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGK-DNYPCGQQLLIH------NGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~-~~ip~~~qrLi~------~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
.|+|... +.+.++.++++.||.++.++|.++... +..+.++--|.. +|+.|++.++|..|++++|+.|....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 4556554 667789999999999999999888641 013456667766 56779889999999999999888753
No 220
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.32 E-value=0.59 Score=35.90 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=47.8
Q ss_pred CEEEEEeCC------C-CEEEEEeCCCCcHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCchhhcCCC
Q 019817 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNY------PCGQQLLIHNGKVLKDETTLADNKVS 65 (335)
Q Consensus 1 M~I~Vkt~~------g-~~~~i~V~~~~TV~dLK~~I~~~~g~--~~i------p~~~qrLi~~Gk~L~D~~tL~d~gI~ 65 (335)
|+|+||... | ....+++....||.+|.+.+...... ..+ ......+..+|+.+.. +.-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888663 3 46778888889999999999877420 000 0244667788888753 55688
Q ss_pred CCCEEEEE
Q 019817 66 EDGFLVVM 73 (335)
Q Consensus 66 ~g~~I~vv 73 (335)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99999886
No 221
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=93.27 E-value=0.085 Score=49.15 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=34.0
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 019817 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (335)
Q Consensus 154 ~~~v~~l~~m-G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~ 193 (335)
-..|++|-++ | ...-+|++||..+++|.+.|++||-.
T Consensus 5 a~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3679999998 7 99999999999999999999999985
No 222
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.04 E-value=0.26 Score=44.20 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=50.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEe-C-C---eecCC-CCchhhcCCCCCCEEEEEeec
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIH-N-G---KVLKD-ETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLi~-~-G---k~L~D-~~tL~d~gI~~g~~I~vv~~~ 76 (335)
+++.++..+||.+|+++++..++ ++.+ ..||-. . . ..|.| +.+|.+++|.++..|.|=++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 55778999999999999999999 8887 688853 3 2 45665 589999999999999887764
No 223
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=92.85 E-value=0.65 Score=37.79 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=47.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCC---------C----CchhhcCC
Q 019817 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-NG---K-VLKD---------E----TTLADNKV 64 (335)
Q Consensus 9 ~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLi~-~G---k-~L~D---------~----~tL~d~gI 64 (335)
++..+.+.|-..+||.++|++|-+..-+. +| ++.+.|-+ .| + +|.| . .||..|+|
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 34568888989999999999998765322 33 35666665 23 3 3543 1 37899999
Q ss_pred CCCCEEEEEee
Q 019817 65 SEDGFLVVMLS 75 (335)
Q Consensus 65 ~~g~~I~vv~~ 75 (335)
.+|.+|.++.+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999998754
No 224
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=92.27 E-value=0.087 Score=36.06 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHH--HHHHHHhcCCHHHHHHHH
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETV--TRALQAAYNNPERAVDYL 191 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~--~~Al~~~~~~~~~A~~~L 191 (335)
+...++|.+|+.|| |+.+-- .+.|...++|..+|++-|
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 44689999999999 987766 589999899999999987
No 225
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.21 E-value=0.46 Score=34.54 Aligned_cols=65 Identities=8% Similarity=0.230 Sum_probs=44.6
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~-~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~--~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
|+|+||....- .-.+++ ...||.+|++.+....+ +.. ....+..+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 88999876431 133566 56899999999986533 221 45667778887543 24458899999987
No 226
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.58 E-value=0.7 Score=37.11 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=45.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCC---------C----CchhhcCCCC
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-NG---K-VLKD---------E----TTLADNKVSE 66 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLi~-~G---k-~L~D---------~----~tL~d~gI~~ 66 (335)
..+.+.|-..+||.++|+||-...-+. +| ++.+.|-+ .| + +|.| . .||..|+|.+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 347888889999999999998765322 33 34555654 23 3 3433 1 3789999999
Q ss_pred CCEEEEEeec
Q 019817 67 DGFLVVMLSK 76 (335)
Q Consensus 67 g~~I~vv~~~ 76 (335)
|.+|.++.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999987553
No 227
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.52 E-value=0.5 Score=35.68 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=38.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~G 50 (335)
|+|+|.. .-++-|.|....+..+|+.+|.++.+ ++.+..+|-|+-
T Consensus 6 ~~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 3555654 37888999999999999999999998 888999999975
No 228
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=89.61 E-value=2.5 Score=31.46 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=41.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCC---CCC-----CCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKD---NYP-----CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~---~ip-----~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
+...+++....||.+|++.+...+..- .+. .....+..+|+.... +.-|++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 567888887889999999998875300 000 023577788888764 4458889999987
No 229
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=88.39 E-value=0.61 Score=37.20 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=42.8
Q ss_pred CEEEEEeCC------C--CEEEEEeCC---CCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCC---ch
Q 019817 1 MKLTVKTLK------G--SHFEIRVQP---SDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-GK------VLKDET---TL 59 (335)
Q Consensus 1 M~I~Vkt~~------g--~~~~i~V~~---~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~-Gk------~L~D~~---tL 59 (335)
|+|+|+... | +.+.|+++. ..||.+|...|.+.+. ..+-+|+.. |+ +|-++. .|
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678888653 3 366788873 3699999999987742 233344322 21 232332 22
Q ss_pred --hhcCCCCCCEEEEEe
Q 019817 60 --ADNKVSEDGFLVVML 74 (335)
Q Consensus 60 --~d~gI~~g~~I~vv~ 74 (335)
.++-|++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 346799999988864
No 230
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=88.01 E-value=1.7 Score=32.78 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=43.9
Q ss_pred CEEEEEeCC------CCEEEEEeCCCCcHHHHHHHHHHHhCCC--CC-C-------CCCeEEEeCCeecCCCCchhhcCC
Q 019817 1 MKLTVKTLK------GSHFEIRVQPSDTVMAVKKNIEDVQGKD--NY-P-------CGQQLLIHNGKVLKDETTLADNKV 64 (335)
Q Consensus 1 M~I~Vkt~~------g~~~~i~V~~~~TV~dLK~~I~~~~g~~--~i-p-------~~~qrLi~~Gk~L~D~~tL~d~gI 64 (335)
|+|+|+... |+...+++ ...||.+|...+..++..- .+ . .....+..+|+...+..-+ +.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 788888542 33334665 4579999999998875300 00 0 1135667788876532222 3458
Q ss_pred CCCCEEEEE
Q 019817 65 SEDGFLVVM 73 (335)
Q Consensus 65 ~~g~~I~vv 73 (335)
++||.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999887
No 231
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.49 E-value=1.1 Score=33.92 Aligned_cols=57 Identities=7% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCCCEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 8 LKGSHFEIRVQPS-DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 8 ~~g~~~~i~V~~~-~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
++|+.+ ++... .||.+|.+.+ + ++.....+..+|+++.. ....+.-|++||.|-++-
T Consensus 25 vNGe~~--el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKDV--KWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEEE--CCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEE
T ss_pred ECCEEE--ECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEc
Confidence 356654 44565 8999998865 5 66677788899998843 234455689999998873
No 232
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=87.38 E-value=0.94 Score=42.85 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC----CHHHHHHHHHh
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYN----NPERAVDYLYS 193 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~----~~~~A~~~L~~ 193 (335)
-+++..|+.|.+|| |+..++.++|...-. +...-++||..
T Consensus 44 ~~~e~~l~~L~d~G---fs~~~i~~il~~~P~il~~~l~~~i~~L~~ 87 (335)
T 4fp9_B 44 LELERVMSSLLDMG---FSNAHINELLSVRRGASLQQLLDIISEFIL 87 (335)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCC---CCHHHHHHHHHhCcccchhHHHHHHHHHHH
Confidence 35799999999999 999999999988632 33445666654
No 233
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=87.24 E-value=2 Score=32.42 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=52.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 14 ~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
...++-..++..||+.++.+.| +.-+...+...+..|+++++|.+-+|+-...|.+-+.-
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3456667789999999999999 88899999889988999999999999988888887654
No 234
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.73 E-value=0.99 Score=32.43 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=36.1
Q ss_pred cHHHHHHHHHC-CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 019817 291 EQEAIQRLEAM-GFDRALVIEAFLACDRNEELAANYLLENAG 331 (335)
Q Consensus 291 e~~aI~rL~~l-GF~~~~~i~Ay~acdknee~Aan~Lf~~~~ 331 (335)
+.+.|.+.+++ |=++..|++.+.+++.|.|+|.+-.|++..
T Consensus 17 ~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 17 HQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 33679998888 999999999999999999999999988754
No 235
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=86.52 E-value=1.2 Score=31.41 Aligned_cols=60 Identities=12% Similarity=0.209 Sum_probs=42.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++.. ....+.-+++||.|.++
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEE
Confidence 55544 47754 456778999999876 4 55677788899998743 22334568899999887
No 236
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=86.39 E-value=3.1 Score=33.68 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=41.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHH----hCCCCCCC----CCeEEEe-CC---eec----------CCC----CchhhcCC
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDV----QGKDNYPC----GQQLLIH-NG---KVL----------KDE----TTLADNKV 64 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~----~g~~~ip~----~~qrLi~-~G---k~L----------~D~----~tL~d~gI 64 (335)
..+.+.|-..+||.++|++|-.. .| +|. +.+.|-+ .| ++| .+. .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 46888998999999999998753 25 433 3444443 11 222 221 36888999
Q ss_pred CCCCEEEEEe
Q 019817 65 SEDGFLVVML 74 (335)
Q Consensus 65 ~~g~~I~vv~ 74 (335)
.+|++|-++.
T Consensus 116 ~Dgatlal~k 125 (126)
T 3kuz_A 116 SNGSTIKVFK 125 (126)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEee
Confidence 9999998763
No 237
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=85.76 E-value=0.75 Score=31.41 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCChHHHH--HHHHHhCCCHHHHHHHHh
Q 019817 292 QEAIQRLEAMGFDRALVI--EAFLACDRNEELAANYLL 327 (335)
Q Consensus 292 ~~aI~rL~~lGF~~~~~i--~Ay~acdknee~Aan~Lf 327 (335)
.++|.++.+|||+-+-.- +.+.+++.|...|.+-|-
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 578999999999987764 889999999999998774
No 238
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=85.73 E-value=1 Score=32.93 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=43.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
|+|+| +|+.+.+ ...||.+|-+. .+ +++...-+.++|.++. .....+.-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LD---CTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TT---CCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cC---CCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEc
Confidence 55554 4776554 56899998764 56 7778888889999884 3345566789999999873
No 239
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=85.36 E-value=1.3 Score=33.51 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=31.6
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~ 48 (335)
||+|- .++..|-|.|..+.+..+||.+|..+.. + +.+.|++
T Consensus 14 KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ 54 (85)
T 1ip9_A 14 KIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQT 54 (85)
T ss_dssp EEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEE
T ss_pred EEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEE
Confidence 44443 3567899999999999999999999976 4 5666554
No 240
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.74 E-value=3.2 Score=42.23 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=44.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhcCCCC
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSE 66 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLi~----~Gk-~L~D~-------------~tL~d~gI~~ 66 (335)
..+.+.|-..+||.++|++|-+..-+. +| ++.+.|-+ .|+ +|.|. .||..|+|.+
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 347888989999999999998654221 33 34555554 233 35442 3899999999
Q ss_pred CCEEEEEeec
Q 019817 67 DGFLVVMLSK 76 (335)
Q Consensus 67 g~~I~vv~~~ 76 (335)
|++|.++.+.
T Consensus 353 ga~v~L~p~~ 362 (644)
T 3hm6_X 353 GATVALVPCL 362 (644)
T ss_dssp TCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999887543
No 241
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=84.46 E-value=1.6 Score=31.85 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=34.8
Q ss_pred HHHHHHHHHC--CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 292 QEAIQRLEAM--GFDRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 292 ~~aI~rL~~l--GF~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
+..|.++.+| -+....+.+.+..++.|.|.+.|.||++.
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 4578999888 68899999999999999999999999963
No 242
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=83.42 E-value=1.1 Score=33.09 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=44.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip-~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
|+|+| +|+.+.+......||.+|-+. .+ ++ +...-+.++|.++. .....++-|++||.|-++-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~---~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSA----LK---VAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHH----HT---CSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHH----cC---CCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEe
Confidence 66655 477654421156899998865 46 66 67777889999984 3456666788999998863
No 243
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=83.34 E-value=2.1 Score=32.73 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.8
Q ss_pred CEEEEEeCC-------C-CEEEEEeC--CCCcHHHHHHHHHHHhC
Q 019817 1 MKLTVKTLK-------G-SHFEIRVQ--PSDTVMAVKKNIEDVQG 35 (335)
Q Consensus 1 M~I~Vkt~~-------g-~~~~i~V~--~~~TV~dLK~~I~~~~g 35 (335)
|+|+|+... | +.+.+++. ...||.+|...+.++..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 578887442 2 45677776 67899999999998853
No 244
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=83.22 E-value=2 Score=32.22 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
..-+.+|-+-=|.+.++.+.++|.-++.+|+++|++|+++.
T Consensus 35 ~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 34455565544567999999999999999999999999975
No 245
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=83.22 E-value=0.43 Score=37.92 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=42.1
Q ss_pred CEEEEEeCC------CCEEEEEeCC----CCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CC--e------ecCCCCch--
Q 019817 1 MKLTVKTLK------GSHFEIRVQP----SDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NG--K------VLKDETTL-- 59 (335)
Q Consensus 1 M~I~Vkt~~------g~~~~i~V~~----~~TV~dLK~~I~~~~g~~~ip~~~qrLi~-~G--k------~L~D~~tL-- 59 (335)
|+|+|+... |+...++++. ..||.+|-..|.+.+. ..+-+|+. .| + +|-+++.+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677787654 3555677763 2499999888887743 33334432 23 1 34333333
Q ss_pred ---hhcCCCCCCEEEEEe
Q 019817 60 ---ADNKVSEDGFLVVML 74 (335)
Q Consensus 60 ---~d~gI~~g~~I~vv~ 74 (335)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 246799999988764
No 246
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=83.15 E-value=5.5 Score=36.12 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=54.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEe---CC--eecCCCCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC-GQQLLIH---NG--KVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~-~~qrLi~---~G--k~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
|.|.|..++| ++.+.|+...|+.+|-..|+...| +.. +-.-|.| +| ..|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4688999988 678999999999999999999999 432 3345554 34 347778888887766666666655
Q ss_pred ecC
Q 019817 75 SKS 77 (335)
Q Consensus 75 ~~~ 77 (335)
|++
T Consensus 78 r~k 80 (294)
T 1ef1_A 78 RAK 80 (294)
T ss_dssp EES
T ss_pred EEE
Confidence 544
No 247
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=82.88 E-value=4.2 Score=30.90 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=35.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEeCCe
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIHNGK 51 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLi~~Gk 51 (335)
+|++. .+|..+.+.++++.+..+|.++|....+ +..+ ...|-|...
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 34443 4678889999999999999999999987 6543 467777653
No 248
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.38 E-value=6.1 Score=36.24 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=54.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEe--CC--eecCCCCchhhcCCCCCCEEEEEee
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIH--NG--KVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip-~~~qrLi~--~G--k~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
|.+.|..++| ++.+.|+...|+.+|-..|+...| +. .+-.-|.| .| ..|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3578888898 788999999999999999999999 43 23345554 44 2477788898887766666655555
Q ss_pred cC
Q 019817 76 KS 77 (335)
Q Consensus 76 ~~ 77 (335)
.+
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 249
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=82.23 E-value=4.1 Score=33.01 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCchhhcCCCCCCEEEEEe
Q 019817 20 SDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVL-----KD--ETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 20 ~~TV~dLK~~I~~~~g~~~ip~~~qrLi~--~Gk~L-----~D--~~tL~d~gI~~g~~I~vv~ 74 (335)
..|+.+|-+.|..++| +. +.+.++- ..+.| +| +++|+++||+.|++|.|+-
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4699999888988888 65 3555552 23444 33 4899999999999999874
No 250
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=82.17 E-value=0.47 Score=32.84 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHC--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 290 AEQEAIQRLEAM--GFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 290 ee~~aI~rL~~l--GF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
|-+++|+.|.+| .+|++....++++++.|.+.|.|-|++-
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 446789999999 7999999999999999999999999863
No 251
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=81.74 E-value=1.7 Score=33.93 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHH-CCCChHHHHHHHHHhCCCHHHHHHHH
Q 019817 292 QEAIQRLEA-MGFDRALVIEAFLACDRNEELAANYL 326 (335)
Q Consensus 292 ~~aI~rL~~-lGF~~~~~i~Ay~acdknee~Aan~L 326 (335)
.+.|+.+++ .|-+|..|++||..|++|.--|.-+|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 455777665 49999999999999999999988766
No 252
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=81.68 E-value=3.3 Score=29.34 Aligned_cols=63 Identities=19% Similarity=0.092 Sum_probs=41.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
|+|+|...+|+.+ ++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|-++-.
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 7889987788864 55678999999887743322 1223334688876443 45667888877743
No 253
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=80.87 E-value=7.5 Score=29.62 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=42.3
Q ss_pred CEEEEEeCC------C-CEEEEEeCCCCcHHHHHHHHHHHhCC--CCC-CCC----Ce-------EEEeCCeecCCCCch
Q 019817 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNY-PCG----QQ-------LLIHNGKVLKDETTL 59 (335)
Q Consensus 1 M~I~Vkt~~------g-~~~~i~V~~~~TV~dLK~~I~~~~g~--~~i-p~~----~q-------rLi~~Gk~L~D~~tL 59 (335)
|+|+|+... | +.+.++ ..||.+|.+.+...+.. ..+ ... .. .+..+|+.+.... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 688888664 3 345454 58999999999877420 001 001 23 5677887663221 1
Q ss_pred hhcCCCCCCEEEEE
Q 019817 60 ADNKVSEDGFLVVM 73 (335)
Q Consensus 60 ~d~gI~~g~~I~vv 73 (335)
.++-+++||.|.++
T Consensus 80 ~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 LETLLKDSDEIGIL 93 (99)
T ss_dssp TTSCCCTTEEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 23458899999886
No 254
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.34 E-value=7.3 Score=39.56 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=45.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCC------CCCCeEEEe----CCe-ecCCC-------------CchhhcCCCC
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNY------PCGQQLLIH----NGK-VLKDE-------------TTLADNKVSE 66 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~~i------p~~~qrLi~----~Gk-~L~D~-------------~tL~d~gI~~ 66 (335)
..+.+.|-..+||.++|++|-+..-+. + .++.+.|-+ .|+ +|.|. .||..|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 568889999999999999998765322 2 245555654 233 34331 3789999999
Q ss_pred CCEEEEEeec
Q 019817 67 DGFLVVMLSK 76 (335)
Q Consensus 67 g~~I~vv~~~ 76 (335)
|.+|.++.+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987654
No 255
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=78.32 E-value=2.4 Score=28.07 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=30.8
Q ss_pred cHHHHHHHHHC-CCCh-HHHHHHHHHhCCCHHHHHHH
Q 019817 291 EQEAIQRLEAM-GFDR-ALVIEAFLACDRNEELAANY 325 (335)
Q Consensus 291 e~~aI~rL~~l-GF~~-~~~i~Ay~acdknee~Aan~ 325 (335)
..+.|...+++ |-+. .+|++-+.+|+.|.+.|++-
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 45679999999 9886 99999999999999999863
No 256
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=78.23 E-value=2.2 Score=30.19 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.7
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHh
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLAC 315 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~ac 315 (335)
..++|+-|++|||.+.++.+|...+
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4679999999999999999998876
No 257
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=77.92 E-value=4.2 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.++.|.+.++.-| -++..++.-|..++.|.++|++-.+.+
T Consensus 5 ~~~~i~~F~~iTg--~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTG--AEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--cCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4678999998732 689999999999999999999877654
No 258
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=77.60 E-value=9.8 Score=35.81 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=52.8
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCchhhcCCCCCCEEEE
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---------KVLKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~G---------k~L~D~~tL~d~gI~~g~~I~v 72 (335)
.+.|..++|....+.|+...|+.+|-..|+...|. ...+..-|.+.. +.|+-+++|.+.++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57889999999999999999999999999999982 234455666532 3456677787777666666655
Q ss_pred Ee
Q 019817 73 ML 74 (335)
Q Consensus 73 v~ 74 (335)
.+
T Consensus 165 rv 166 (371)
T 3ivf_A 165 RR 166 (371)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 259
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=77.32 E-value=1.9 Score=36.26 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~ 192 (335)
...+++|++.| -|++++|..||+...+|++.|+--|-
T Consensus 103 ~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 103 RRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 45677888888 35999999999999999999997774
No 260
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=77.15 E-value=2.8 Score=32.70 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=30.2
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 019817 154 EQTIQQIMD-MGGGTWDKETVTRALQAAYNNPERAVDYL 191 (335)
Q Consensus 154 ~~~v~~l~~-mG~~~f~~~~~~~Al~~~~~~~~~A~~~L 191 (335)
++-|.-+|+ .| -+++.+++||+.++||.-.|+-||
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 455777776 58 999999999999999999998887
No 261
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.99 E-value=7 Score=39.52 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=54.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeC---C--eecCCCCchhhcCCCCCCEEEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip-~~~qrLi~~---G--k~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
|.|.|..++| ++.|.|+...|+.+|-..|+...| +. .+..-|.|. | ..|+.++.|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 4578888888 678999999999999999999999 43 334556552 2 357778888888777777666665
Q ss_pred ecC
Q 019817 75 SKS 77 (335)
Q Consensus 75 ~~~ 77 (335)
+.+
T Consensus 81 Rvk 83 (575)
T 2i1j_A 81 RAK 83 (575)
T ss_dssp EES
T ss_pred EEE
Confidence 544
No 262
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=76.60 E-value=3.7 Score=28.69 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=39.8
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 8 ~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4677654 4 568999998876 4 556677788999988432 23344688999998873
No 263
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=76.58 E-value=1 Score=31.12 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~ 193 (335)
.+.++.|++|.+|=- +++++-++..|++..+|.+.+|+.|+.
T Consensus 10 ~e~~~~~~~L~~MFP-~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFP-DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHST-TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHcc-cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456889999999931 289999999999999999999999874
No 264
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.15 E-value=4.5 Score=28.40 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
+..++.|.+.+++-| -+++.|+.-|..+++|.++|+.-.|..
T Consensus 13 ~~~~e~i~qF~~iTg--~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 13 SALKGLIQQFTTITG--ASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHHTC--CCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 345678999999742 679999999999999999999988765
No 265
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=75.87 E-value=5.1 Score=28.67 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=39.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ--LLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~q--rLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
+...+++....||.+|.+.+..... - .... .+..+|+.+..+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p---~-~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP---Q-INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG---G-GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc---c-hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 4566777778899999999887742 0 1233 778899988653 457889999886
No 266
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=75.83 E-value=6.8 Score=27.56 Aligned_cols=27 Identities=7% Similarity=0.271 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAA 180 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~ 180 (335)
...++++.-|+.+| |.+.++.+|++..
T Consensus 15 ~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 15 EAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 34578999999999 9999999999875
No 267
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=73.78 E-value=13 Score=33.99 Aligned_cols=69 Identities=10% Similarity=-0.058 Sum_probs=49.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeC---C--eecCCCCchhhcCCCCCCEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip-~~~qrLi~~---G--k~L~D~~tL~d~gI~~g~~I~v 72 (335)
|.+.|..++|....+.|+...|+.+|-..|+...| +. .+-.-|.|. | ..|+.++.|.+......-.+++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN---LLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT---CSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 56889999999999999999999999999999999 43 333455543 3 3477778887764333334443
No 268
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=72.30 E-value=3.2 Score=32.18 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=39.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC--------CeEEEeCC-eecC------CCCchhhcCCCCCCEEEEE
Q 019817 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG--------QQLLIHNG-KVLK------DETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 12 ~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~--------~qrLi~~G-k~L~------D~~tL~d~gI~~g~~I~vv 73 (335)
...|+|++++|+.+|-+.|.+.-...--.|. ...|+..+ ..|+ =+++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 3467899999999999999884320000111 22333333 2332 1477999999999999884
No 269
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=72.22 E-value=2.8 Score=37.10 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQAAY 181 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~~~ 181 (335)
++.|+.|++|| |+++.++.||...+
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~~ 194 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRLG 194 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcC
Confidence 67999999999 99999999998764
No 270
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=69.99 E-value=22 Score=27.69 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=48.6
Q ss_pred EEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCee--cCCCCchhhcCCCCCCEEEEEee
Q 019817 4 TVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKV--LKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 4 ~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi---~~Gk~--L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
.|-..+...+++.+....|+.+|+..+.++.+ +..+.+.|+ ++|.. |+++..--.-.+.-+..|++..+
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 45555677888999999999999999999998 655577775 67743 45544322223555678887654
No 271
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=69.81 E-value=11 Score=25.31 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=31.1
Q ss_pred HHHHHHHH--CCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 019817 293 EAIQRLEA--MGFDRALVIEAFLACDRNEELAANYLLENAGD 332 (335)
Q Consensus 293 ~aI~rL~~--lGF~~~~~i~Ay~acdknee~Aan~Lf~~~~d 332 (335)
+-|.+... -|=+|+..|.-+..++-|.++|.|-|++..++
T Consensus 11 ~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 11 ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDDE 52 (53)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccccC
Confidence 44666443 49999999999999999999999999988443
No 272
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=68.53 E-value=4.9 Score=32.59 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=29.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~ 48 (335)
..+.|..+.|+.+||..|++.+| ++++.|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 35788889999999999999999 9999999854
No 273
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=68.33 E-value=19 Score=27.10 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=44.5
Q ss_pred CEEEEEeCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCC-CCCCCC-eE---EEe-CCeecCCCCchhhcCCCCCCEEEEE
Q 019817 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKD-NYPCGQ-QL---LIH-NGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~-~~~TV~dLK~~I~~~~g~~-~ip~~~-qr---Li~-~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
|+|+|+. .+..+.|-.. ...||.+|-++-..++-+. ...++. .. |-+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 4455566553 4569999977655443210 021222 22 224 67889888889887 6677777654
Q ss_pred e
Q 019817 74 L 74 (335)
Q Consensus 74 ~ 74 (335)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 3
No 274
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=67.39 E-value=16 Score=26.19 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=37.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhC--CCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQG--KDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g--~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
..+.++ ....||.+|.+.+..... ...+......+..+|+.... +.-|++||.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 355566 567899999999875421 00011234577889988753 4468899999887
No 275
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.51 E-value=20 Score=27.69 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=47.9
Q ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCchhhc----CCCCCCEEEE
Q 019817 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI------HNGKVLKDETTLADN----KVSEDGFLVV 72 (335)
Q Consensus 3 I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi------~~Gk~L~D~~tL~d~----gI~~g~~I~v 72 (335)
|+|-..+|....|.|+..+|+.++-+.+..+.++. . ...--|+ +--+.|+|...|-+. .+.....+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~-~-~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL-S-DETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC-C-CCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC-C-CCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 56667799999999999999999999999998722 1 2222332 123778887655443 4555666665
Q ss_pred Eee
Q 019817 73 MLS 75 (335)
Q Consensus 73 v~~ 75 (335)
..+
T Consensus 90 ~kr 92 (100)
T 1wgr_A 90 RKN 92 (100)
T ss_dssp CSC
T ss_pred ecc
Confidence 433
No 276
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=63.03 E-value=9.8 Score=28.47 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=33.8
Q ss_pred cCCcccHHH----HHHHHH-CC--CChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 286 NVTPAEQEA----IQRLEA-MG--FDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 286 ~lt~ee~~a----I~rL~~-lG--F~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
+|++.|+.. ++.+.+ || .++...++|.++|+=|.+.|.|++|+.
T Consensus 25 ~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 25 QLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 366666553 333332 46 999999999999999999999999975
No 277
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=62.89 E-value=24 Score=25.67 Aligned_cols=58 Identities=10% Similarity=0.198 Sum_probs=36.5
Q ss_pred EEeCCCCcHHHHHHHHHHHhCC--CC--C----CCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 15 IRVQPSDTVMAVKKNIEDVQGK--DN--Y----PCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 15 i~V~~~~TV~dLK~~I~~~~g~--~~--i----p~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
++++...||.+|.+.+...... .. + ......+..+|+.+.... -.+.-+++||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4555568999999999877310 00 0 013556778888774221 123458899999886
No 278
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.67 E-value=17 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
.+.++.|.+.+++-|. -+.+.|+.-|..++.|.+.||.-.|.+
T Consensus 16 ~~~~e~i~qF~~ITg~-~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGI-ESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHCC-SCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhCC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4467889999998642 378899999999999999999988876
No 279
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=61.13 E-value=23 Score=33.17 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCC---HHHHHHHHHh
Q 019817 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAA----YNN---PERAVDYLYS 193 (335)
Q Consensus 150 ~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~----~~~---~~~A~~~L~~ 193 (335)
.......|..|..+| |+.+.+.+.|+.. ..+ ...-++||.+
T Consensus 75 ~~~l~~~i~~L~~LG---ls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~ 122 (335)
T 4fp9_B 75 LQQLLDIISEFILLG---LNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQK 122 (335)
T ss_dssp HHHHHHHHHHHHHTT---CCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcC---CCHHHHHHHHHhChhhccCCHHHHHHHHHHHHH
Confidence 355688999999999 9999999999987 223 3445566643
No 280
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=60.26 E-value=30 Score=32.21 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=40.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-CCchhhcCC
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG-KVLKD-ETTLADNKV 64 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~G-k~L~D-~~tL~d~gI 64 (335)
....+.+.+..|+.+|+++|+..++ ++++.|.|+|.+ +..-+ ......|.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 4456788899999999999999999 999999999998 44433 445666544
No 281
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=58.36 E-value=26 Score=23.50 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 154 EQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 154 ~~~v~~l~~m--G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
|+.|++.... | -+|+-++|-|+.++-|++.|+|-|++.
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 4666665553 7 999999999999999999999999876
No 282
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.42 E-value=40 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~~~qrLi~--~Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
.++.+|+.+.+..++ ++....+|+. .|..++|+.-+..+. .+++.|++.+-
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL~~g 80 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMILEKG 80 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEEETT
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEEcCC
Confidence 479999999999988 7655666654 588888876665542 55666666543
No 283
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=57.04 E-value=1.7 Score=47.87 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.4
Q ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 019817 156 TIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (335)
Q Consensus 156 ~v~~l~~m-G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~ 193 (335)
.|++|-++ | ...-+|++||..+++|.|.|++||-.
T Consensus 8 ~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LRk 43 (1289)
T 3avx_A 8 LVKELRERTG---AGMMDCKKALTEANGDIELAIENMRK 43 (1289)
T ss_dssp CTHHHHTTTC---CCTTTTTTTTTTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 48889888 6 77888999999999999999999975
No 284
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=56.35 E-value=41 Score=24.52 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=43.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
.|.|.+.+|..+. +....|+.|+=..|....+ -.-.--..+|+...- ++-+++|+.|-++..
T Consensus 7 ~i~v~tP~G~~~~--lp~GaT~~D~A~~Ih~~lg-----~~~v~AkVNG~~v~L-----~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVIS--LPIGSTVIDFAYAIHSAVG-----NRMIGAKVDGRIVPI-----DYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEEE--EETTCBHHHHHHHHCHHHH-----HTEEEEEETTEEECT-----TCBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEEE--ecCCCCHHHHHHHhhhhhh-----cceEEEEECCEEcCC-----CcccCCCCEEEEEcc
Confidence 4788888998755 4578899999888877655 112223457876543 245788999988754
No 285
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=56.01 E-value=4.3 Score=29.51 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=35.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 14 ~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
.+++....||.+|.+.+ + ++.....+..+|+++..+ .-|++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 34556678999998754 4 556677788999998654 457889988765
No 286
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=55.91 E-value=19 Score=32.06 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH----hc----CCHHHHHHHHHh
Q 019817 154 EQTIQQIMDMGGGTWDKETVTRALQA----AY----NNPERAVDYLYS 193 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f~~~~~~~Al~~----~~----~~~~~A~~~L~~ 193 (335)
.++|+.|.+|| ++..++.+.... -. .+...-++||.+
T Consensus 6 s~~l~~L~~lG---v~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~ 50 (270)
T 3m66_A 6 SETLQKLVLLG---VDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKD 50 (270)
T ss_dssp HHHHHHHHHTT---CCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHcC---CCHHHHhhccchhhhhhccChhhhHHHHHHHHHH
Confidence 46788899999 988888766555 12 244567788865
No 287
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=60.36 E-value=2.5 Score=34.07 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 154 EQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 154 ~~~v~~l~~mG~~~f-~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
...+++|-|.- | . +-.....||+++++|...||.+|.+.
T Consensus 19 Q~lLNQLrEIT-G-IqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 19 QMLLNQLREIT-G-IQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 34788898883 2 5 46667899999999999999999654
No 288
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=54.51 E-value=20 Score=23.52 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHc-CCCCCCH-HHHHHHHHHhcCCHHHHHH
Q 019817 152 DLEQTIQQIMDM-GGGTWDK-ETVTRALQAAYNNPERAVD 189 (335)
Q Consensus 152 ~~~~~v~~l~~m-G~~~f~~-~~~~~Al~~~~~~~~~A~~ 189 (335)
+.++.|.+.+++ | -+. ++|+.=|..++.|.+.|+.
T Consensus 4 d~de~ia~F~~iTG---~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTG---IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 467899999999 5 664 9999999999999999985
No 289
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=53.92 E-value=15 Score=28.63 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=30.4
Q ss_pred HHHHHHHHH----CCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 292 QEAIQRLEA----MGFDRALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 292 ~~aI~rL~~----lGF~~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
-++|++|.. ..-|--.|.|||+....+.+.|..||++-
T Consensus 11 g~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 11 GAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 344555443 47888889999999999999999999874
No 290
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.77 E-value=24 Score=25.00 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=32.7
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 155 ~~v~~l~~m-G~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
+.|.+.+++ | =++..++.-|..+..|.++|++-.++.
T Consensus 19 ~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 689999987 5 689999999999999999999988765
No 291
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.53 E-value=36 Score=24.90 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
....+++|-|.- |.-+-.....||+++++|...||-+|.+.
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 456899999984 22466666899999999999999999765
No 292
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.57 E-value=3 Score=33.60 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=30.4
Q ss_pred HHHHHHHC-CCC-hHHHHHHHHHhCCCHHHHHHHHhcc
Q 019817 294 AIQRLEAM-GFD-RALVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 294 aI~rL~~l-GF~-~~~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
.|++|.++ |.. ...-.+||.||++|.+.|..+|-++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 57788888 765 6777889999999999999999765
No 293
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=50.37 E-value=23 Score=27.10 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=40.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcCCCCCCEEEEEe
Q 019817 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 11 ~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
..+.+++....||.++-+.+.-......+......+-.+|+... .+.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 34667888999999998876432111114455678888888886 344478899998873
No 294
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=48.79 E-value=49 Score=29.32 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHHHH-HHHCCCChHHHHHHHHHh-------CCCHHHHHHHHhcc
Q 019817 292 QEAIQR-LEAMGFDRALVIEAFLAC-------DRNEELAANYLLEN 329 (335)
Q Consensus 292 ~~aI~r-L~~lGF~~~~~i~Ay~ac-------dknee~Aan~Lf~~ 329 (335)
+..|+- +.++||+++++..++..| .++...-.+||.+.
T Consensus 148 ~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~ 193 (270)
T 3m66_A 148 KENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNV 193 (270)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHH
Confidence 345664 478999999998887776 33455556666543
No 295
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=48.66 E-value=55 Score=32.50 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=42.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCchhhcCCCCCCEEEE
Q 019817 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP---CGQQLL--IHNGKV---LKDETTLADNKVSEDGFLVV 72 (335)
Q Consensus 12 ~~~i~V~~~~TV~dLK~~I~~~~g~~~ip---~~~qrL--i~~Gk~---L~D~~tL~d~gI~~g~~I~v 72 (335)
.+.|-|..+.||.||-..+..+.+ ++ ...+|| +|++|+ +.++.+|..++=....++.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 466778889999999999999887 54 567787 488865 57778888754222455544
No 296
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=48.37 E-value=34 Score=26.55 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=31.5
Q ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 019817 155 QTIQQIMD-MGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (335)
Q Consensus 155 ~~v~~l~~-mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~gi 195 (335)
+.|.+||+ .. -+--.|.+||-.+.++.++|-.||.++.
T Consensus 15 ~~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 15 KIIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 45555555 46 7888999999999999999999999984
No 297
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=48.36 E-value=70 Score=23.84 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=48.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCC-CCCCCeEEEeCCee--cCCCCchhhcCCCCCCEEEEEe
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDN-YPCGQQLLIHNGKV--LKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~-g~~~-ip~~~qrLi~~Gk~--L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
.-+.|+..+|+.++-.+++... |... -.++-.|..+.|.. |..+.++.+-||+.-+.|-++-
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3468899999999999988643 3210 12346788899987 8999999999999999998764
No 298
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=47.75 E-value=40 Score=23.43 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
+..+..|.++.+|=-- ++++.++..|..+ ++++.-+|=+++|
T Consensus 15 sql~~Mve~V~~mFPq-v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 15 GQLNAMAHQIQEMFPQ-VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHCTT-SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 4568889999999322 7999999999997 9999999988887
No 299
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=46.94 E-value=42 Score=26.79 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=44.4
Q ss_pred EEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCe--ecCCCC--chhhcCCCCCCEEE
Q 019817 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG------QQLLI---HNGK--VLKDET--TLADNKVSEDGFLV 71 (335)
Q Consensus 5 Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~------~qrLi---~~Gk--~L~D~~--tL~d~gI~~g~~I~ 71 (335)
|-..+...+++.+....|+.+|+..+.++.+ +..+ .+.|+ ++|. +|+++. ....++ -+..|+
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~--~NgRLf 88 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALG--INSHLF 88 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSC--SSEEEE
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeecc--ccceEE
Confidence 4445666677888899999999999999987 4332 67664 6773 345433 344544 467777
Q ss_pred EEee
Q 019817 72 VMLS 75 (335)
Q Consensus 72 vv~~ 75 (335)
+..+
T Consensus 89 vc~k 92 (120)
T 2dhz_A 89 ACTR 92 (120)
T ss_dssp EECT
T ss_pred Eeeh
Confidence 7643
No 300
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=46.22 E-value=30 Score=23.65 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.7
Q ss_pred cCCCCcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 019817 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196 (335)
Q Consensus 147 ~~~~~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~giP 196 (335)
++.+..+.+.+.+ |.++.+.+||..+.+|..+|...| ||.
T Consensus 6 ~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 6 LLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp TTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred hccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 4444555555443 667789999999999999999988 664
No 301
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=45.38 E-value=12 Score=25.86 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 019817 303 FDRALVIEAFLACDRNEELAANYL 326 (335)
Q Consensus 303 F~~~~~i~Ay~acdknee~Aan~L 326 (335)
|.+....+|+..|+.|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567889999999999999999877
No 302
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.23 E-value=12 Score=24.52 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.0
Q ss_pred HHHHHHHCCCChHHHHHHHHHhCC
Q 019817 294 AIQRLEAMGFDRALVIEAFLACDR 317 (335)
Q Consensus 294 aI~rL~~lGF~~~~~i~Ay~acdk 317 (335)
.|.||++||.+.+.|..-|..--.
T Consensus 10 EiAkLMSLGl~id~A~~~Ye~gi~ 33 (47)
T 1pgy_A 10 EIARLMSLGLSIEEATEFYENDVT 33 (47)
T ss_dssp HHHHHHHHCCCSHHHHHHHHHHCS
T ss_pred HHHHHHHccCChhhHHHHHHcCch
Confidence 589999999999999988865433
No 303
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.53 E-value=56 Score=22.65 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
+..+..|.++.+|=-- ++++.+.+.|..++ +++.-+|=+++|
T Consensus 11 ~q~~~mv~~V~~mfP~-vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQ-VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHCCS-SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 5578899999999322 79999999998876 999999999988
No 304
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=43.93 E-value=91 Score=24.76 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=46.9
Q ss_pred EEEEeCCCCcHHHHHHHHHH-HhCC--C--CCCCCCeEEEeCCeec--CCCCchhhcCCCCCCEEEEE
Q 019817 13 FEIRVQPSDTVMAVKKNIED-VQGK--D--NYPCGQQLLIHNGKVL--KDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~-~~g~--~--~ip~~~qrLi~~Gk~L--~D~~tL~d~gI~~g~~I~vv 73 (335)
+.+-|.+.++..+|-+.+-. .++. | .|.-+...+..+|+.. +.+++|.+.||...+.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 67889999999998876543 3331 1 2455566889999988 44789999999999999875
No 305
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=43.64 E-value=12 Score=27.64 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 019817 304 DRALVIEAFLACDRNEELAANYL 326 (335)
Q Consensus 304 ~~~~~i~Ay~acdknee~Aan~L 326 (335)
.+....+||..|+.|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 35667889999999999999887
No 306
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=43.40 E-value=54 Score=32.47 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=37.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIH 48 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~--~~qrLi~ 48 (335)
|.+.|..++|....+.|+...|+.+|-..|+...| +.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEE
Confidence 35789999999999999999999999999999999 643 3455654
No 307
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=41.19 E-value=30 Score=35.55 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=41.1
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ecCCCCchhhc
Q 019817 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-VLKDETTLADN 62 (335)
Q Consensus 9 ~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk-~L~D~~tL~d~ 62 (335)
..+.+.+.+.++.|+.+||..|+..+| ++++.|.|++.+. .+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 345567888899999999999999999 9999999998764 44555566665
No 308
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=41.19 E-value=78 Score=26.42 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=37.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCchhhcCCCCCCEEEEE
Q 019817 14 EIRVQPSDTVMAVKKNIEDVQGKDNYP---------CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 14 ~i~V~~~~TV~dLK~~I~~~~g~~~ip---------~~~qrLi~~Gk~L~D~~tL~d~gI~~g~~I~vv 73 (335)
.++++. .||.+|.+.+...+. .+. .....+..+|+.+....- .++-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p--~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYP--ALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCG--GGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhCh--hhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 345555 899999999987732 010 234567788888754222 24468999999887
No 309
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.88 E-value=30 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=23.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhC
Q 019817 10 GSHFEIRVQPSDTVMAVKKNIEDVQG 35 (335)
Q Consensus 10 g~~~~i~V~~~~TV~dLK~~I~~~~g 35 (335)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45788999999999999999999987
No 310
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=39.01 E-value=1e+02 Score=23.10 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=39.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhc--CCCCCCEEEEEee
Q 019817 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL-KDETTLADN--KVSEDGFLVVMLS 75 (335)
Q Consensus 14 ~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~L-~D~~tL~d~--gI~~g~~I~vv~~ 75 (335)
.+.|+.+.|+..+...|.++.+ + +.+-|+.+...+ ..+.+++++ ..+++.+|+|.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4567889999999999999988 5 566666676654 445666554 2235677777543
No 311
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=38.88 E-value=26 Score=30.46 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=23.0
Q ss_pred cHHHHHHHHHCCCChHHHHHHHHHh
Q 019817 291 EQEAIQRLEAMGFDRALVIEAFLAC 315 (335)
Q Consensus 291 e~~aI~rL~~lGF~~~~~i~Ay~ac 315 (335)
..++++-|++|||.+.++.+|..++
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3579999999999999999999888
No 312
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=37.93 E-value=61 Score=25.00 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCchhhcCCCCCCEEEEEeec
Q 019817 21 DTVMAVKKNIEDVQGKDNYPCG--QQLLI--HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (335)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~~--~qrLi--~~Gk~L~D~~tL~d~gI~~g~~I~vv~~~ 76 (335)
.++.+|+.|.+.+++ ++.. ..+|+ ..|..++|+.-+..+ . .+++.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p-~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--P-SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--C-SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--C-CCCEEEEEcC
Confidence 479999999999998 7542 35554 469999887665553 2 4455555543
No 313
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=37.07 E-value=34 Score=31.76 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHH----hcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQA----AYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~----~~~~~~~A~~~L~~g 194 (335)
.+.+.+|..|.++| ++.+++.++-.. .-.|++..++||.+.
T Consensus 17 ~~~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~ 61 (343)
T 3mva_O 17 LKNEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLLSK 61 (343)
T ss_dssp ---CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHHHT
T ss_pred cccHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHHHc
Confidence 34567899999999 998887665211 234889999999764
No 314
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=36.48 E-value=31 Score=24.68 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=26.1
Q ss_pred cCCcccHHHHHHHH-HCCCChHHHHHHHHHh
Q 019817 286 NVTPAEQEAIQRLE-AMGFDRALVIEAFLAC 315 (335)
Q Consensus 286 ~lt~ee~~aI~rL~-~lGF~~~~~i~Ay~ac 315 (335)
.||+-|.+.|..+. ..||+.+.+..|+.-|
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 36888999999877 4699999999999888
No 315
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=36.21 E-value=28 Score=30.50 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHh
Q 019817 292 QEAIQRLEAMGFDRALVIEAFLAC 315 (335)
Q Consensus 292 ~~aI~rL~~lGF~~~~~i~Ay~ac 315 (335)
.++++-|++|||.+.++.+|...+
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 579999999999999999998876
No 316
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.06 E-value=70 Score=22.38 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHhC
Q 019817 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (335)
Q Consensus 151 ~~~~~~v~~l~~mG~~~f~~~~~~~Al~~~~~~~~~A~~~L~~g 194 (335)
+..+..+.++.+|=-- ++++.++..|..+. +++.-+|=+++|
T Consensus 11 ~ql~~mv~~V~~mfP~-vp~~~I~~DL~~Tg-sVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPH-VPLGVIQRDLAKTG-CVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHCSS-SCHHHHHHHHHTSC-CHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 5578899999999311 79999999998865 999999999998
No 317
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=35.45 E-value=1.4e+02 Score=22.23 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=47.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCC--CCC-CeEEEeCC--eecCCCCchhhcCCCCCCEEEEEe
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDNY--PCG-QQLLIHNG--KVLKDETTLADNKVSEDGFLVVML 74 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~-g~~~i--p~~-~qrLi~~G--k~L~D~~tL~d~gI~~g~~I~vv~ 74 (335)
.-+.|+..+|+.++-.+++... |.. + .++ -.+..+.| +.|..+.|+.+-||+.-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4468999999999999988643 321 2 222 46778999 889999999999999999988764
No 318
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=35.23 E-value=1.3e+02 Score=24.60 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=43.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC----eEEEe-----------------CCeec-CCCCchhhcCCCCCCE
Q 019817 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQ----QLLIH-----------------NGKVL-KDETTLADNKVSEDGF 69 (335)
Q Consensus 12 ~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~----qrLi~-----------------~Gk~L-~D~~tL~d~gI~~g~~ 69 (335)
.+.|-.-.+.|+.+|-..|.+.... .+.-. .++|| .|+.- +|++||.+++..-||.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 3667777899999999988877431 11111 13333 23322 5689999999999999
Q ss_pred EEEEeecC
Q 019817 70 LVVMLSKS 77 (335)
Q Consensus 70 I~vv~~~~ 77 (335)
|.|.+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99988654
No 319
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=33.29 E-value=88 Score=23.66 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=34.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 019817 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL-LIHNGKV 52 (335)
Q Consensus 10 g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qr-Li~~Gk~ 52 (335)
...+.|.|+...+=.++|+.|+..++ +.+.... |+..||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCce
Confidence 36789999999999999999999999 8887774 5677764
No 320
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=33.27 E-value=92 Score=23.29 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=24.8
Q ss_pred EEEEeCCCCE-EEEEeC-CCCcHHHHHHHHHHHhC
Q 019817 3 LTVKTLKGSH-FEIRVQ-PSDTVMAVKKNIEDVQG 35 (335)
Q Consensus 3 I~Vkt~~g~~-~~i~V~-~~~TV~dLK~~I~~~~g 35 (335)
|+.|....+. -.|.++ ...+|.+||+.|..+.+
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 5666665554 456776 56899999999999887
No 321
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.16 E-value=37 Score=33.77 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=46.7
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCchhhc--CCCCCCEEEEEee
Q 019817 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----G--KVLK-DETTLADN--KVSEDGFLVVMLS 75 (335)
Q Consensus 15 i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~----G--k~L~-D~~tL~d~--gI~~g~~I~vv~~ 75 (335)
+-|+.+.+|.+|-..|.+..| +|++.--++|. + ..|+ .+.|+.+. .|.+|+.|++-..
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKD 217 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEec
Confidence 577889999999999999999 98876655554 2 3466 47899999 9999999887643
No 322
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=32.42 E-value=79 Score=23.72 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=39.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec-CCCCchhhc--CCCCCCEEEEEee
Q 019817 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKVL-KDETTLADN--KVSEDGFLVVMLS 75 (335)
Q Consensus 14 ~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~q-rLi~~Gk~L-~D~~tL~d~--gI~~g~~I~vv~~ 75 (335)
.+-|+.+.||.++...|.++.. +.+++- -|+.+...+ ..+.+++++ ..+++.+|+|.-.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 3566789999999999999988 666544 444455554 445666554 1235677777643
No 323
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=32.25 E-value=1.7e+02 Score=22.47 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=51.8
Q ss_pred EEEEEeCCC---CEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC--e-ecCCCCchhhcCCCCCCEEEEEee
Q 019817 2 KLTVKTLKG---SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG--K-VLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 2 ~I~Vkt~~g---~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~G--k-~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
+|+|...+. ..+++.|..+.-|+-|.-+|-+..... -.-..--|-..- + .|+-..||..|||+-+..+++.-.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 577777554 558899998899999999988776510 222333444333 2 356778999999999999998754
No 324
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.83 E-value=83 Score=22.95 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=31.7
Q ss_pred HHHHHHHHHC-CC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 019817 292 QEAIQRLEAM-GF-DRALVIEAFLACDRNEELAANYLLENA 330 (335)
Q Consensus 292 ~~aI~rL~~l-GF-~~~~~i~Ay~acdknee~Aan~Lf~~~ 330 (335)
.-.+++|.+. |. |...-.+||.|.+.|...|.-+|-+..
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 3468889988 74 556667899999999999999997753
No 325
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=31.05 E-value=14 Score=26.93 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=7.7
Q ss_pred HHHhhcchh----hhcCCCC
Q 019817 252 LDFLRNNQQ----LINEPVD 267 (335)
Q Consensus 252 l~~lr~np~----~~~e~~~ 267 (335)
++.|++||+ ||+|+..
T Consensus 44 ~q~I~~n~e~Fl~ll~e~~~ 63 (72)
T 1pve_A 44 LQQISQHQEHFIQMLNEPVQ 63 (72)
T ss_dssp HHHHHTTHHHHHHHHHSCSC
T ss_pred HHHHHHCHHHHHHHHcCCcc
Confidence 344444444 5566543
No 326
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=30.67 E-value=97 Score=31.63 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=38.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~ 48 (335)
|.+.|..++|....+.|+...|+.+|-..|+.+.|. ...+..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999982 2345566655
No 327
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.37 E-value=1.7e+02 Score=26.56 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=45.3
Q ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e-C---CeecCCCCchhhc----CCCCCCEEEE
Q 019817 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--H-N---GKVLKDETTLADN----KVSEDGFLVV 72 (335)
Q Consensus 3 I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--~-~---Gk~L~D~~tL~d~----gI~~g~~I~v 72 (335)
|+|-..+|....|.|++++|+.+|-+.+..+.+. ...+.--|+ + . -+.|.|...|-+. .......+++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4555668899999999999999999988888762 222233332 1 1 2678887665543 3445556555
Q ss_pred E
Q 019817 73 M 73 (335)
Q Consensus 73 v 73 (335)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 328
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=30.19 E-value=99 Score=23.30 Aligned_cols=38 Identities=32% Similarity=0.589 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCChH-HHHHHHHHhCCCHHHHHHHHhcc
Q 019817 292 QEAIQRLEAMGFDRA-LVIEAFLACDRNEELAANYLLEN 329 (335)
Q Consensus 292 ~~aI~rL~~lGF~~~-~~i~Ay~acdknee~Aan~Lf~~ 329 (335)
.....||.+-||++. +++-=|+...||+++=-+||-+.
T Consensus 28 ~~~~~~L~~~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~ 66 (89)
T 1ci4_A 28 EVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDT 66 (89)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 467899999999986 45556999999999999999653
No 329
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=29.62 E-value=83 Score=27.14 Aligned_cols=25 Identities=8% Similarity=0.416 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAA 180 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~ 180 (335)
.++++..|+.+| |.+.++.+|+...
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 468999999999 9999999999886
No 330
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.22 E-value=17 Score=26.99 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 019817 303 FDRALVIEAFLACDRNEELAANYL 326 (335)
Q Consensus 303 F~~~~~i~Ay~acdknee~Aan~L 326 (335)
|.+....+||..|++|...||..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467788899999999999999877
No 331
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=28.86 E-value=1.3e+02 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=25.3
Q ss_pred CEE-EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe
Q 019817 11 SHF-EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ 44 (335)
Q Consensus 11 ~~~-~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~q 44 (335)
..+ .|.|..+.|+.+|...|...+| ..-...
T Consensus 21 ~iWRri~Vp~~~TL~~LH~vIq~afg---w~~~HL 52 (188)
T 2i1s_A 21 QIWRRIQVPENYTFLDLHKAIQAVMD---WEDYHL 52 (188)
T ss_dssp CEEEEEEEETTCBHHHHHHHHHHHTT---CCCCSC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhC---CCCCEe
Confidence 444 5899999999999999999999 554444
No 332
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=27.59 E-value=80 Score=24.64 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=43.3
Q ss_pred EEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-------CCCeEEEe---CCee--cCC-CCchhhcCCCCCCEE
Q 019817 4 TVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-------CGQQLLIH---NGKV--LKD-ETTLADNKVSEDGFL 70 (335)
Q Consensus 4 ~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip-------~~~qrLi~---~Gk~--L~D-~~tL~d~gI~~g~~I 70 (335)
.+=..+|-.+.+++..+.|+.+||..+.++-.. +| ++.-.+.. .|.+ |.| .+.|.++..- -..+
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piL 99 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFL 99 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEE
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEE
Confidence 333458888999999999999999999987431 22 22222321 2333 655 4788887665 3355
Q ss_pred EEEee
Q 019817 71 VVMLS 75 (335)
Q Consensus 71 ~vv~~ 75 (335)
.|+-|
T Consensus 100 klver 104 (108)
T 2v1y_A 100 KVIEP 104 (108)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 55533
No 333
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=27.46 E-value=95 Score=27.04 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 019817 153 LEQTIQQIMDMGGGTWDKETVTRALQAA 180 (335)
Q Consensus 153 ~~~~v~~l~~mG~~~f~~~~~~~Al~~~ 180 (335)
.++++..|+.+| |.+.++.+|+...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 468999999999 9999999999875
No 334
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.38 E-value=29 Score=23.73 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 019817 304 DRALVIEAFLACDRNEELAANYL 326 (335)
Q Consensus 304 ~~~~~i~Ay~acdknee~Aan~L 326 (335)
.+....+||..| +|...||..|
T Consensus 22 Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 22 EAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCHHHHHHHh
Confidence 456668889999 8999999876
No 335
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=27.17 E-value=95 Score=24.60 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=31.5
Q ss_pred cCCcccHHHHHHHHH-CCCChHHHHHHHHHhC-CCHHHHHHH
Q 019817 286 NVTPAEQEAIQRLEA-MGFDRALVIEAFLACD-RNEELAANY 325 (335)
Q Consensus 286 ~lt~ee~~aI~rL~~-lGF~~~~~i~Ay~acd-knee~Aan~ 325 (335)
.+++.|++.+.++.. +|++..++.+.+..|+ .....++..
T Consensus 34 ~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~~ 75 (133)
T 2h5n_A 34 KIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVAL 75 (133)
T ss_dssp CCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHHH
Confidence 358899999999876 8999998888888776 356666663
No 336
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=26.74 E-value=33 Score=26.08 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 019817 303 FDRALVIEAFLACDRNEELAANYL 326 (335)
Q Consensus 303 F~~~~~i~Ay~acdknee~Aan~L 326 (335)
|.+....+||..|++|...||..|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 346778899999999999999987
No 337
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=26.06 E-value=2.1e+02 Score=25.49 Aligned_cols=68 Identities=7% Similarity=0.052 Sum_probs=40.7
Q ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCchhhc--CCCCCCEEEEE
Q 019817 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-------GKVLKDETTLADN--KVSEDGFLVVM 73 (335)
Q Consensus 3 I~Vkt~~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~-------Gk~L~D~~tL~d~--gI~~g~~I~vv 73 (335)
|+|-..+|....|.|++++|+.+|-..+..+.+ +..+.--.++. -|.|.|...+-+. ....++.+++.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~ 87 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFR 87 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEE
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEe
Confidence 566677899999999999999999988887755 33222222221 2678776554332 23334444443
No 338
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=24.83 E-value=1.1e+02 Score=22.99 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=33.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 019817 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL-LIHNGKV 52 (335)
Q Consensus 10 g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qr-Li~~Gk~ 52 (335)
...+.+.|+...+=.++|+.|+..++ +.+...+ |+..||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCce
Confidence 37889999999999999999999999 7777774 4677754
No 339
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=24.64 E-value=58 Score=23.75 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=28.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 019817 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP-----CGQQLLIHNG 50 (335)
Q Consensus 12 ~~~i~V~~~~TV~dLK~~I~~~~g~~~ip-----~~~qrLi~~G 50 (335)
.+.|.|.++.+..+|..+|..+.+ .. ....||-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 577899999999999999999988 43 2556676654
No 340
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.48 E-value=82 Score=23.80 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.2
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHH
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~ 29 (335)
+|+|...+|..+.|++....||.+.-..
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 7899999999999999999999886543
No 341
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=24.27 E-value=1.2e+02 Score=31.43 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=39.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----cCC--CCchhhcCCCCCCEEEEE
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG--------QQLLIHNGK--V----LKD--ETTLADNKVSEDGFLVVM 73 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~--------~qrLi~~Gk--~----L~D--~~tL~d~gI~~g~~I~vv 73 (335)
..+.++.+.|+.+|-..|+.+.... +..- ..+++|... . .++ +++|.++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4567777889999988888853200 2111 246666532 1 112 578999999999999885
No 342
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=24.25 E-value=1.3e+02 Score=23.12 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh-------cCCHHHHHHHHHhC
Q 019817 156 TIQQIMDMGGGTWDKETVTRALQAA-------YNNPERAVDYLYSG 194 (335)
Q Consensus 156 ~v~~l~~mG~~~f~~~~~~~Al~~~-------~~~~~~A~~~L~~g 194 (335)
.|+..++|| |++..+++++..- |...+..|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 789999999 9999999988763 44567777776654
No 343
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=24.18 E-value=2e+02 Score=21.29 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=49.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-CeecCCCCchhhcCCCCCCEEEEEeecC
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-GKVLKDETTLADNKVSEDGFLVVMLSKS 77 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~-Gk~L~D~~tL~d~gI~~g~~I~vv~~~~ 77 (335)
..+.|........+-+..++++. +++...-+|-+ |--+....+-...-+|.|+.|.++-|-+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~---vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFK---VPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTT---CCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred eEEecCccCchHHHHHHHHHHcC---CCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 34688888888888888899988 88888777765 4456778888888899999999987644
No 344
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=23.03 E-value=1.6e+02 Score=23.01 Aligned_cols=58 Identities=28% Similarity=0.256 Sum_probs=38.6
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhc--CC-CCCCEEEEEeec
Q 019817 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (335)
Q Consensus 16 ~V~~~~TV~dLK~~I~~~~g~~~ip~~~-qrLi~~Gk~L~D~~tL~d~--gI-~~g~~I~vv~~~ 76 (335)
-|..+.||.+|...|..+.+ +.++. +-|+.++....-+.+++++ .. .++.+|+|....
T Consensus 50 lVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 45678899999999999987 66555 4444455544556677665 12 236688887654
No 345
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=22.02 E-value=63 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=21.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHH
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~ 28 (335)
|.|+|+ ++|+.+.+++++..|+.++-+
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 356665 789999999999999988754
No 346
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=21.91 E-value=19 Score=31.01 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHh
Q 019817 292 QEAIQRLEAMGFDRALVIEAFLAC 315 (335)
Q Consensus 292 ~~aI~rL~~lGF~~~~~i~Ay~ac 315 (335)
.++++-|++|||.+.++.+|...+
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 579999999999999999998877
No 347
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=21.76 E-value=65 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCcHHHHHHH
Q 019817 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (335)
Q Consensus 2 ~I~Vkt~~g~~~~i~V~~~~TV~dLK~~ 29 (335)
+|+|. ++|+.+.+++++..||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56665 6899999999999999986554
No 348
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.46 E-value=2.3e+02 Score=21.82 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=35.5
Q ss_pred EEEEeC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee
Q 019817 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV 52 (335)
Q Consensus 3 I~Vkt~-~g~~~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi~~Gk~ 52 (335)
|.||.- .|.+..|.+....+..+|..++...+| ..+-|.|....
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 556644 677888999999999999999999999 46677777643
No 349
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=21.15 E-value=82 Score=25.90 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHhCCCCCCC--CCeEEE--eCCeecCCCCchhhcCCCCCCEEEEEee
Q 019817 20 SDTVMAVKKNIEDVQGKDNYPC--GQQLLI--HNGKVLKDETTLADNKVSEDGFLVVMLS 75 (335)
Q Consensus 20 ~~TV~dLK~~I~~~~g~~~ip~--~~qrLi--~~Gk~L~D~~tL~d~gI~~g~~I~vv~~ 75 (335)
-.++.+|+.+.+..++ ++. ...+|+ ..|..++|+.-+..+ .+ +++.|++.
T Consensus 81 A~SL~EL~~K~~~kL~---l~~~~~~~~LvLeeDGTeVddEeYF~tL--p~-nT~LmvL~ 134 (145)
T 1ibx_B 81 ASCLEDLRSKACDILA---IDKSLTPVTLVLAEDGTIVDDDDYFLCL--PS-NTKFVALA 134 (145)
T ss_dssp CSSHHHHHHHHHHHHT---CSCTTSCCEEEETTTCCBCSSHHHHHHS--CS-SCBEEEEC
T ss_pred cCCHHHHHHHHHHHhc---CCCCccccEEEEeeCCcEEechhHhhcC--CC-CCEEEEEC
Confidence 3579999999999998 755 355554 468888887766654 34 44444444
No 350
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.91 E-value=65 Score=24.61 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=44.0
Q ss_pred CEEEEEeCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCC--eecCCC-Cc---hhhcCCCCCCEEE
Q 019817 1 MKLTVKTLKGSHFE-IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNG--KVLKDE-TT---LADNKVSEDGFLV 71 (335)
Q Consensus 1 M~I~Vkt~~g~~~~-i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--~~G--k~L~D~-~t---L~d~gI~~g~~I~ 71 (335)
|.|+|-. +|.... --|.+..|..|+-..+.+..| . +.+..|+ +.| +.|..+ +. |...| +....|.
T Consensus 8 mel~Vwv-~g~er~VsGvT~~TTC~DVV~aL~~~~G---~-~~~y~LvE~wRg~ER~L~~~~r~l~~l~~wG-~~~~eV~ 81 (95)
T 2cs4_A 8 MELKVWV-DGVQRIVCGVTEVTTCQEVVIALAQAIG---R-TGRYTLIEKWRDTERHLAPHENPIISLNKWG-QYASDVQ 81 (95)
T ss_dssp BCCCEEE-TTEEECCSSBCSSSCHHHHHHHHHHHHS---C-CSEEEEEEEETTEEEECCSSSCHHHHHHTTG-GGSTTCE
T ss_pred CEEEEEE-CCceeEEECCCCCCcHHHHHHHHHhccC---C-CccEEEEEecCCCeecCCCcccHHHHHHHhC-cCCCceE
Confidence 4455543 444333 368899999999998888888 2 3566665 666 567644 33 45556 3345566
Q ss_pred EEeecCC
Q 019817 72 VMLSKSK 78 (335)
Q Consensus 72 vv~~~~~ 78 (335)
+++++..
T Consensus 82 F~Lr~~~ 88 (95)
T 2cs4_A 82 LILRRTG 88 (95)
T ss_dssp EEEEEEE
T ss_pred EEEEECC
Confidence 6665443
No 351
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=20.61 E-value=1.1e+02 Score=23.29 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=31.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCe
Q 019817 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL-IHNGK 51 (335)
Q Consensus 13 ~~i~V~~~~TV~dLK~~I~~~~g~~~ip~~~qrL-i~~Gk 51 (335)
+.+.|+...|=.++|+.|+..++ +.+..... +..||
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~---VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFG---VRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHC---CCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhC---CCceEEEeEEeCCc
Confidence 88999999999999999999999 88877754 56765
No 352
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=20.44 E-value=72 Score=26.52 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=22.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCcHHHHHHH
Q 019817 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (335)
Q Consensus 1 M~I~Vkt~~g~~~~i~V~~~~TV~dLK~~ 29 (335)
|.|+|+ ++|+.+.+++++..||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456665 6899999999999999887654
Done!