Query 019818
Match_columns 335
No_of_seqs 201 out of 2882
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00260 dolichyl-phosphate be 100.0 5.7E-40 1.2E-44 302.5 32.9 255 62-334 66-324 (333)
2 KOG2977 Glycosyltransferase [G 100.0 2.4E-37 5.3E-42 264.4 24.8 301 18-334 18-321 (323)
3 PLN02726 dolichyl-phosphate be 100.0 7.6E-34 1.7E-38 251.6 25.0 230 63-320 6-237 (243)
4 KOG2978 Dolichol-phosphate man 100.0 2E-33 4.4E-38 226.2 20.4 230 66-322 3-234 (238)
5 cd04188 DPG_synthase DPG_synth 100.0 1.2E-32 2.5E-37 238.7 20.5 211 70-306 1-211 (211)
6 PRK11204 N-glycosyltransferase 100.0 2.2E-31 4.8E-36 254.2 28.4 238 63-332 51-292 (420)
7 PRK14583 hmsR N-glycosyltransf 100.0 3.6E-31 7.7E-36 254.0 28.2 237 64-333 73-314 (444)
8 PRK10714 undecaprenyl phosphat 100.0 1.9E-29 4.1E-34 232.0 25.2 217 65-320 5-223 (325)
9 cd06442 DPM1_like DPM1_like re 100.0 1.4E-29 3E-34 220.9 21.2 219 70-319 1-221 (224)
10 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 4.6E-29 9.9E-34 238.8 25.7 235 64-327 47-294 (439)
11 cd06427 CESA_like_2 CESA_like_ 100.0 1.2E-28 2.5E-33 218.1 18.4 231 66-328 1-239 (241)
12 cd02520 Glucosylceramide_synth 100.0 5.7E-28 1.2E-32 207.0 18.9 167 66-297 1-171 (196)
13 TIGR03472 HpnI hopanoid biosyn 100.0 3.5E-27 7.6E-32 221.6 25.4 198 65-297 40-247 (373)
14 TIGR03469 HonB hopene-associat 100.0 3.3E-26 7.1E-31 215.7 25.5 199 63-296 37-255 (384)
15 PRK11498 bcsA cellulose syntha 99.9 7E-26 1.5E-30 227.2 26.5 230 63-326 257-495 (852)
16 cd06437 CESA_CaSu_A2 Cellulose 99.9 1E-26 2.3E-31 204.3 17.0 207 66-305 1-217 (232)
17 TIGR03030 CelA cellulose synth 99.9 2.1E-25 4.5E-30 224.5 27.1 233 63-325 128-383 (713)
18 cd06421 CESA_CelA_like CESA_Ce 99.9 3.3E-26 7.1E-31 200.8 17.6 199 66-296 1-204 (234)
19 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 4E-26 8.7E-31 208.3 18.7 210 69-296 1-218 (299)
20 COG1215 Glycosyltransferases, 99.9 1.6E-25 3.4E-30 214.9 22.5 228 65-325 53-290 (439)
21 cd06435 CESA_NdvC_like NdvC_li 99.9 1.9E-25 4.1E-30 196.6 17.8 219 69-322 1-231 (236)
22 PRK14716 bacteriophage N4 adso 99.9 2.6E-24 5.6E-29 206.4 25.9 202 64-298 64-284 (504)
23 cd06439 CESA_like_1 CESA_like_ 99.9 3.2E-25 7E-30 196.9 18.3 194 63-296 26-222 (251)
24 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 4E-25 8.7E-30 189.6 17.2 192 66-296 1-194 (202)
25 PRK10073 putative glycosyl tra 99.9 1.2E-24 2.5E-29 200.6 18.8 207 65-305 5-221 (328)
26 cd04179 DPM_DPG-synthase_like 99.9 7E-25 1.5E-29 185.4 15.9 185 70-285 1-185 (185)
27 PRK13915 putative glucosyl-3-p 99.9 1.8E-24 4E-29 197.0 18.7 228 64-325 29-265 (306)
28 cd04187 DPM1_like_bac Bacteria 99.9 5E-24 1.1E-28 180.0 19.7 175 70-279 1-175 (181)
29 PF13641 Glyco_tranf_2_3: Glyc 99.9 2.6E-26 5.5E-31 201.0 5.5 208 66-304 1-213 (228)
30 cd02525 Succinoglycan_BP_ExoA 99.9 2.1E-24 4.5E-29 190.9 17.6 228 68-327 2-235 (249)
31 cd06913 beta3GnTL1_like Beta 1 99.9 6.4E-24 1.4E-28 185.0 19.7 202 70-305 1-214 (219)
32 cd04195 GT2_AmsE_like GT2_AmsE 99.9 1.1E-24 2.5E-29 186.8 14.8 191 69-296 1-194 (201)
33 cd06434 GT2_HAS Hyaluronan syn 99.9 2.9E-24 6.2E-29 188.8 15.7 199 68-301 2-213 (235)
34 cd04192 GT_2_like_e Subfamily 99.9 9.5E-24 2.1E-28 184.3 18.6 194 70-296 1-202 (229)
35 PRK10063 putative glycosyl tra 99.9 2.7E-23 5.8E-28 184.3 19.9 193 66-300 1-193 (248)
36 cd04196 GT_2_like_d Subfamily 99.9 7.4E-24 1.6E-28 183.1 16.0 195 69-296 1-196 (214)
37 cd06433 GT_2_WfgS_like WfgS an 99.9 7E-24 1.5E-28 181.0 15.6 188 69-297 1-188 (202)
38 cd04185 GT_2_like_b Subfamily 99.9 5E-23 1.1E-27 176.9 16.2 162 70-296 1-166 (202)
39 cd04191 Glucan_BSP_ModH Glucan 99.9 4.9E-22 1.1E-26 176.4 21.4 224 68-319 1-251 (254)
40 PRK05454 glucosyltransferase M 99.9 2.1E-21 4.4E-26 192.6 28.0 231 62-324 120-381 (691)
41 PRK11234 nfrB bacteriophage N4 99.9 1.9E-21 4.1E-26 193.9 27.0 203 61-296 58-279 (727)
42 PRK10018 putative glycosyl tra 99.9 4.9E-22 1.1E-26 178.6 20.4 111 65-185 4-114 (279)
43 cd06438 EpsO_like EpsO protein 99.9 1.2E-22 2.6E-27 172.1 13.2 172 70-281 1-183 (183)
44 cd06420 GT2_Chondriotin_Pol_N 99.9 6.5E-22 1.4E-26 166.9 15.5 170 70-295 1-172 (182)
45 PF00535 Glycos_transf_2: Glyc 99.9 8.8E-23 1.9E-27 168.6 9.9 167 69-266 1-168 (169)
46 cd04186 GT_2_like_c Subfamily 99.9 1.3E-21 2.8E-26 161.8 16.4 157 70-296 1-158 (166)
47 cd02522 GT_2_like_a GT_2_like_ 99.9 1.6E-21 3.4E-26 169.7 17.1 178 68-294 1-178 (221)
48 cd04190 Chitin_synth_C C-termi 99.9 1.4E-22 3E-27 179.7 10.1 201 70-319 1-241 (244)
49 cd02526 GT2_RfbF_like RfbF is 99.9 1.2E-21 2.7E-26 172.2 12.5 188 70-296 1-197 (237)
50 COG1216 Predicted glycosyltran 99.9 5.2E-21 1.1E-25 175.0 16.9 216 65-305 2-224 (305)
51 PRK15489 nfrB bacteriophage N4 99.9 7.4E-20 1.6E-24 180.4 24.3 197 63-295 68-286 (703)
52 cd06436 GlcNAc-1-P_transferase 99.9 8.1E-21 1.8E-25 162.0 14.8 101 70-182 1-115 (191)
53 TIGR01556 rhamnosyltran L-rham 99.8 3.4E-20 7.3E-25 167.8 14.6 186 73-296 1-194 (281)
54 PF10111 Glyco_tranf_2_2: Glyc 99.8 3.5E-19 7.5E-24 161.0 20.5 200 69-296 1-215 (281)
55 cd06423 CESA_like CESA_like is 99.8 2.5E-20 5.3E-25 154.6 8.2 108 70-186 1-108 (180)
56 cd02511 Beta4Glucosyltransfera 99.7 4.1E-17 8.9E-22 143.2 11.1 100 68-186 2-101 (229)
57 cd00761 Glyco_tranf_GTA_type G 99.7 9.5E-16 2.1E-20 123.8 15.5 153 70-292 1-154 (156)
58 COG0463 WcaA Glycosyltransfera 99.7 2.9E-16 6.3E-21 133.6 12.8 106 65-181 2-107 (291)
59 KOG3736 Polypeptide N-acetylga 99.4 1.8E-13 3.9E-18 131.4 6.4 216 63-296 139-362 (578)
60 KOG2547 Ceramide glucosyltrans 99.4 2.1E-12 4.6E-17 115.4 12.3 201 63-296 82-290 (431)
61 KOG3737 Predicted polypeptide 99.3 2.5E-12 5.4E-17 115.5 6.8 223 63-297 152-381 (603)
62 KOG3738 Predicted polypeptide 99.3 2.3E-12 5E-17 116.0 5.4 212 64-296 122-340 (559)
63 PF13506 Glyco_transf_21: Glyc 99.3 2.5E-10 5.5E-15 95.7 15.3 138 134-297 5-148 (175)
64 COG2943 MdoH Membrane glycosyl 99.2 3.1E-09 6.8E-14 99.3 21.8 217 63-304 141-380 (736)
65 PLN02893 Cellulose synthase-li 99.0 4.5E-08 9.7E-13 96.9 20.0 161 144-325 282-500 (734)
66 PF13632 Glyco_trans_2_3: Glyc 99.0 6E-09 1.3E-13 88.6 10.7 138 159-318 1-142 (193)
67 cd02514 GT13_GLCNAC-TI GT13_GL 98.9 4.9E-09 1.1E-13 95.8 9.7 108 68-186 2-130 (334)
68 PF03142 Chitin_synth_2: Chiti 98.9 3.7E-08 8E-13 94.9 14.3 214 65-305 24-359 (527)
69 PF13712 Glyco_tranf_2_5: Glyc 98.8 1.2E-08 2.6E-13 88.5 7.2 175 68-297 1-192 (217)
70 cd00899 b4GalT Beta-4-Galactos 98.2 1.3E-05 2.8E-10 68.8 11.1 150 67-296 3-158 (219)
71 PF09488 Osmo_MPGsynth: Mannos 98.0 0.00013 2.9E-09 66.0 13.8 172 66-266 50-261 (381)
72 PF13704 Glyco_tranf_2_4: Glyc 98.0 2.9E-05 6.3E-10 58.2 7.8 79 75-169 1-84 (97)
73 PLN02189 cellulose synthase 98.0 7.9E-05 1.7E-09 76.3 12.9 115 63-183 328-560 (1040)
74 KOG2571 Chitin synthase/hyalur 98.0 9.3E-05 2E-09 74.6 13.2 129 148-297 430-572 (862)
75 TIGR02460 osmo_MPGsynth mannos 98.0 0.00046 1E-08 62.2 15.8 172 66-266 50-261 (381)
76 PF05679 CHGN: Chondroitin N-a 97.9 0.00041 8.8E-09 67.7 15.0 114 63-181 244-366 (499)
77 PRK14503 mannosyl-3-phosphogly 97.8 0.0012 2.5E-08 60.0 15.7 103 66-181 51-184 (393)
78 COG4092 Predicted glycosyltran 97.7 0.0028 6E-08 55.2 16.1 109 66-181 2-119 (346)
79 PLN02195 cellulose synthase A 97.6 0.00043 9.4E-09 70.6 11.3 56 63-124 249-308 (977)
80 PF03071 GNT-I: GNT-I family; 97.6 0.00039 8.5E-09 65.6 9.5 185 63-294 90-295 (434)
81 PLN02638 cellulose synthase A 97.5 0.00073 1.6E-08 69.7 11.4 115 63-183 346-578 (1079)
82 PRK14502 bifunctional mannosyl 97.2 0.016 3.5E-07 57.9 15.9 103 66-181 55-188 (694)
83 PLN02190 cellulose synthase-li 97.2 0.003 6.6E-08 63.1 10.8 56 64-125 91-150 (756)
84 PF06306 CgtA: Beta-1,4-N-acet 97.1 0.0026 5.7E-08 56.9 8.4 100 65-176 86-195 (347)
85 PF03452 Anp1: Anp1; InterPro 97.0 0.007 1.5E-07 53.6 10.6 111 62-178 21-165 (269)
86 PLN02436 cellulose synthase A 96.8 0.0098 2.1E-07 61.6 10.9 56 63-124 362-421 (1094)
87 KOG3588 Chondroitin synthase 1 96.8 0.011 2.4E-07 53.9 9.8 105 64-178 227-335 (494)
88 KOG3916 UDP-Gal:glucosylcerami 96.8 0.032 7E-07 50.5 12.5 154 63-296 148-307 (372)
89 PLN02400 cellulose synthase 96.6 0.011 2.3E-07 61.5 9.4 56 63-124 353-412 (1085)
90 PF11316 Rhamno_transf: Putati 96.5 0.027 5.8E-07 49.3 10.0 81 99-182 54-140 (234)
91 PLN02915 cellulose synthase A 96.3 0.018 3.9E-07 59.6 9.0 56 63-124 284-343 (1044)
92 PF11735 CAP59_mtransfer: Cryp 95.6 0.35 7.5E-06 42.5 12.6 108 69-181 3-136 (241)
93 PF03552 Cellulose_synt: Cellu 95.3 0.039 8.5E-07 55.2 6.4 51 133-183 168-228 (720)
94 PF09258 Glyco_transf_64: Glyc 95.1 0.025 5.4E-07 50.1 4.0 105 68-187 1-106 (247)
95 PF13733 Glyco_transf_7N: N-te 95.1 0.089 1.9E-06 41.5 6.5 78 65-172 46-127 (136)
96 PF01762 Galactosyl_T: Galacto 95.1 0.12 2.5E-06 44.0 7.9 165 102-295 19-194 (195)
97 PF12804 NTP_transf_3: MobA-li 94.9 0.13 2.7E-06 41.9 7.5 94 72-185 19-115 (160)
98 PLN02248 cellulose synthase-li 94.7 0.016 3.4E-07 60.3 1.8 55 127-183 583-647 (1135)
99 cd02508 ADP_Glucose_PP ADP-glu 94.7 1.5 3.2E-05 37.2 13.8 156 71-296 23-192 (200)
100 PF04666 Glyco_transf_54: N-Ac 94.6 0.67 1.5E-05 42.1 11.9 117 65-185 51-198 (297)
101 cd02540 GT2_GlmU_N_bac N-termi 94.6 0.25 5.3E-06 42.8 9.0 96 71-184 20-118 (229)
102 PLN02917 CMP-KDO synthetase 94.5 0.58 1.3E-05 42.6 11.5 52 132-184 108-164 (293)
103 cd00218 GlcAT-I Beta1,3-glucur 94.1 0.49 1.1E-05 40.8 9.4 96 66-176 1-115 (223)
104 cd02516 CDP-ME_synthetase CDP- 94.0 0.47 1E-05 40.7 9.3 99 71-184 22-124 (218)
105 cd04182 GT_2_like_f GT_2_like_ 93.9 0.52 1.1E-05 39.1 9.3 91 76-183 24-118 (186)
106 PF03214 RGP: Reversibly glyco 93.9 0.071 1.5E-06 48.2 4.0 100 66-183 8-118 (348)
107 PF02434 Fringe: Fringe-like; 93.6 0.15 3.2E-06 45.3 5.5 117 155-304 85-211 (252)
108 PF02709 Glyco_transf_7C: N-te 93.5 0.094 2E-06 37.5 3.4 48 249-296 17-66 (78)
109 TIGR03202 pucB xanthine dehydr 93.2 1.1 2.5E-05 37.5 10.2 96 76-184 24-124 (190)
110 PLN02458 transferase, transfer 93.1 1.5 3.2E-05 40.0 10.9 102 64-177 110-223 (346)
111 TIGR00453 ispD 2-C-methyl-D-er 92.6 2 4.3E-05 36.8 11.1 93 76-184 25-119 (217)
112 PF01644 Chitin_synth_1: Chiti 92.6 2 4.3E-05 35.2 10.2 107 75-181 2-163 (163)
113 COG2068 Uncharacterized MobA-r 92.3 1.7 3.8E-05 36.8 9.8 94 75-184 28-125 (199)
114 cd04181 NTP_transferase NTP_tr 92.2 1.6 3.4E-05 37.2 10.0 99 71-183 23-121 (217)
115 KOG1476 Beta-1,3-glucuronyltra 92.0 2.8 6.1E-05 37.9 11.2 100 65-176 86-201 (330)
116 PF11397 GlcNAc: Glycosyltrans 92.0 3.9 8.4E-05 38.0 12.7 111 68-185 2-145 (343)
117 PRK13385 2-C-methyl-D-erythrit 91.8 6.8 0.00015 34.0 13.6 95 76-184 28-126 (230)
118 TIGR00466 kdsB 3-deoxy-D-manno 91.7 3.4 7.4E-05 36.2 11.6 92 72-183 19-115 (238)
119 TIGR03310 matur_ygfJ molybdenu 91.7 1.1 2.3E-05 37.4 8.2 96 72-184 20-118 (188)
120 PRK14352 glmU bifunctional N-a 91.1 9.7 0.00021 37.2 15.2 98 71-184 26-127 (482)
121 cd02503 MobA MobA catalyzes th 91.0 1.2 2.7E-05 36.9 7.8 87 72-181 21-109 (181)
122 PF05045 RgpF: Rhamnan synthes 90.5 13 0.00028 36.6 15.3 112 64-188 263-400 (498)
123 KOG1413 N-acetylglucosaminyltr 90.2 0.91 2E-05 41.6 6.5 112 63-180 64-191 (411)
124 PF00483 NTP_transferase: Nucl 90.2 0.73 1.6E-05 40.3 6.0 101 71-186 24-131 (248)
125 cd06915 NTP_transferase_WcbM_l 90.1 2.8 6.1E-05 35.7 9.5 98 71-183 23-121 (223)
126 cd02509 GDP-M1P_Guanylyltransf 90.1 5.1 0.00011 36.0 11.4 95 71-179 26-126 (274)
127 cd02518 GT2_SpsF SpsF is a gly 90.0 3.4 7.4E-05 35.9 10.0 98 71-184 18-116 (233)
128 TIGR03552 F420_cofC 2-phospho- 89.6 2.9 6.4E-05 35.2 9.1 50 132-182 65-117 (195)
129 PLN03180 reversibly glycosylat 89.5 0.38 8.2E-06 43.8 3.5 87 66-172 11-109 (346)
130 cd06422 NTP_transferase_like_1 89.3 3 6.4E-05 35.8 9.0 97 71-182 24-121 (221)
131 COG1209 RfbA dTDP-glucose pyro 89.2 4.5 9.8E-05 36.0 9.8 186 71-298 25-216 (286)
132 TIGR01173 glmU UDP-N-acetylglu 89.1 2.3 5E-05 40.9 9.0 95 71-183 22-118 (451)
133 KOG1022 Acetylglucosaminyltran 89.1 2.7 5.8E-05 40.7 8.9 110 63-187 440-550 (691)
134 PRK00317 mobA molybdopterin-gu 89.1 2.1 4.6E-05 36.0 7.8 86 76-183 28-116 (193)
135 PF01697 Glyco_transf_92: Glyc 88.4 3 6.5E-05 37.3 8.8 108 68-185 3-136 (285)
136 PRK02726 molybdopterin-guanine 87.8 3.4 7.4E-05 35.1 8.3 88 76-183 31-120 (200)
137 TIGR02665 molyb_mobA molybdopt 87.3 2.9 6.3E-05 34.8 7.5 88 76-183 25-115 (186)
138 cd02523 PC_cytidylyltransferas 87.3 3.4 7.4E-05 35.7 8.1 90 71-178 23-114 (229)
139 cd04189 G1P_TT_long G1P_TT_lon 87.1 11 0.00023 32.7 11.2 99 71-183 25-123 (236)
140 PRK14355 glmU bifunctional N-a 87.0 4.3 9.3E-05 39.3 9.4 97 71-184 25-124 (459)
141 cd02513 CMP-NeuAc_Synthase CMP 86.7 4.5 9.7E-05 34.6 8.5 42 143-184 79-126 (223)
142 cd06425 M1P_guanylylT_B_like_N 86.6 4.8 0.0001 34.9 8.7 99 71-184 25-127 (233)
143 PLN02728 2-C-methyl-D-erythrit 86.5 10 0.00022 33.7 10.7 92 78-184 52-146 (252)
144 COG1213 Predicted sugar nucleo 86.5 1.9 4.2E-05 37.4 5.8 90 77-181 30-121 (239)
145 TIGR00454 conserved hypothetic 86.4 9.2 0.0002 32.1 9.9 98 71-187 21-120 (183)
146 cd02517 CMP-KDO-Synthetase CMP 86.0 10 0.00022 32.9 10.5 94 71-184 20-118 (239)
147 cd06428 M1P_guanylylT_A_like_N 85.6 7.3 0.00016 34.4 9.5 102 71-184 25-129 (257)
148 PLN03153 hypothetical protein; 85.5 4.3 9.3E-05 39.5 8.2 112 142-296 188-313 (537)
149 PRK15480 glucose-1-phosphate t 85.4 12 0.00027 33.9 11.0 98 71-183 28-128 (292)
150 cd06431 GT8_LARGE_C LARGE cata 85.3 7.6 0.00017 35.0 9.5 105 67-181 2-121 (280)
151 TIGR03584 PseF pseudaminic aci 85.1 9.7 0.00021 33.0 9.8 90 76-183 22-122 (222)
152 PRK14360 glmU bifunctional N-a 84.5 5.8 0.00013 38.2 9.0 97 71-184 23-122 (450)
153 PRK00155 ispD 2-C-methyl-D-ery 84.4 8.3 0.00018 33.3 9.1 94 76-184 29-124 (227)
154 TIGR01207 rmlA glucose-1-phosp 84.1 9 0.0002 34.6 9.5 99 71-183 24-124 (286)
155 PRK13368 3-deoxy-manno-octulos 83.5 20 0.00043 31.0 11.2 90 76-184 25-117 (238)
156 PRK14358 glmU bifunctional N-a 83.3 6.6 0.00014 38.4 8.8 96 71-184 29-127 (481)
157 PRK14353 glmU bifunctional N-a 82.8 6.3 0.00014 37.9 8.4 97 71-183 27-126 (446)
158 KOG2287 Galactosyltransferases 82.1 34 0.00073 32.0 12.6 193 66-297 95-303 (349)
159 PRK14354 glmU bifunctional N-a 81.3 11 0.00024 36.4 9.5 94 71-183 24-120 (458)
160 PRK05450 3-deoxy-manno-octulos 80.9 22 0.00047 30.9 10.5 93 71-184 21-119 (245)
161 PF09837 DUF2064: Uncharacteri 80.8 12 0.00025 29.2 7.7 78 101-184 8-88 (122)
162 cd02538 G1P_TT_short G1P_TT_sh 79.4 18 0.00039 31.4 9.5 100 71-183 25-125 (240)
163 PRK14356 glmU bifunctional N-a 79.2 9.8 0.00021 36.7 8.4 94 71-182 27-124 (456)
164 PLN03133 beta-1,3-galactosyltr 78.9 78 0.0017 32.1 15.0 74 104-179 419-498 (636)
165 cd06426 NTP_transferase_like_2 78.8 13 0.00029 31.6 8.4 97 71-184 23-121 (220)
166 cd02541 UGPase_prokaryotic Pro 78.6 32 0.00069 30.4 10.9 102 71-183 25-147 (267)
167 TIGR01099 galU UTP-glucose-1-p 78.1 29 0.00062 30.5 10.5 53 132-184 94-148 (260)
168 PF11051 Mannosyl_trans3: Mann 77.8 14 0.00031 33.1 8.4 93 69-169 3-103 (271)
169 cd04183 GT2_BcE_like GT2_BcbE_ 77.7 21 0.00046 30.7 9.3 96 71-181 23-121 (231)
170 COG2266 GTP:adenosylcobinamide 77.3 30 0.00065 28.7 9.3 84 79-182 28-112 (177)
171 COG0746 MobA Molybdopterin-gua 76.5 16 0.00034 31.0 7.8 53 132-184 61-115 (192)
172 TIGR01208 rmlA_long glucose-1- 76.3 22 0.00048 33.0 9.6 99 71-183 24-123 (353)
173 PRK14489 putative bifunctional 76.2 15 0.00032 34.6 8.3 42 142-183 78-120 (366)
174 COG1208 GCD1 Nucleoside-diphos 76.1 25 0.00053 33.0 9.8 98 71-184 26-125 (358)
175 cd04198 eIF-2B_gamma_N The N-t 76.0 48 0.001 28.2 11.0 98 71-184 25-127 (214)
176 PRK14357 glmU bifunctional N-a 75.9 17 0.00037 35.0 9.0 93 71-183 22-116 (448)
177 PRK09382 ispDF bifunctional 2- 75.1 24 0.00053 33.3 9.4 92 76-183 31-123 (378)
178 cd02524 G1P_cytidylyltransfera 75.0 32 0.0007 30.2 9.9 42 141-183 101-143 (253)
179 TIGR01105 galF UTP-glucose-1-p 73.4 48 0.001 30.1 10.7 102 71-183 28-156 (297)
180 PF02485 Branch: Core-2/I-Bran 73.3 58 0.0013 28.3 11.0 105 68-184 1-115 (244)
181 COG1211 IspD 4-diphosphocytidy 71.8 69 0.0015 28.0 12.4 93 75-181 29-125 (230)
182 cd04194 GT8_A4GalT_like A4GalT 71.3 31 0.00068 30.1 8.9 76 102-179 29-117 (248)
183 PF01128 IspD: 2-C-methyl-D-er 70.0 63 0.0014 28.0 10.2 91 76-183 26-119 (221)
184 PLN02248 cellulose synthase-li 69.8 25 0.00054 37.6 8.7 57 63-125 364-424 (1135)
185 PRK09451 glmU bifunctional N-a 69.6 24 0.00052 34.1 8.4 93 71-181 27-121 (456)
186 cd06432 GT8_HUGT1_C_like The C 69.4 43 0.00092 29.6 9.2 95 76-180 11-118 (248)
187 PF07507 WavE: WavE lipopolysa 69.3 22 0.00048 32.5 7.5 98 76-183 17-122 (311)
188 PRK15171 lipopolysaccharide 1, 68.1 64 0.0014 29.9 10.5 106 66-180 24-143 (334)
189 TIGR02623 G1P_cyt_trans glucos 67.8 66 0.0014 28.3 10.2 43 140-183 101-143 (254)
190 TIGR01479 GMP_PMI mannose-1-ph 67.6 69 0.0015 31.2 11.0 98 71-181 26-129 (468)
191 PF02348 CTP_transf_3: Cytidyl 67.5 47 0.001 28.1 9.0 93 76-186 22-119 (217)
192 PF13896 Glyco_transf_49: Glyc 66.7 7.7 0.00017 35.7 4.0 39 146-184 117-155 (317)
193 PF05060 MGAT2: N-acetylglucos 65.7 36 0.00078 31.7 8.1 52 66-124 31-82 (356)
194 PRK10122 GalU regulator GalF; 65.1 91 0.002 28.3 10.7 101 71-183 28-156 (297)
195 PF05212 DUF707: Protein of un 64.7 8.4 0.00018 34.6 3.7 101 64-184 39-144 (294)
196 PRK15460 cpsB mannose-1-phosph 64.6 98 0.0021 30.3 11.3 99 71-182 31-137 (478)
197 PF03360 Glyco_transf_43: Glyc 63.8 17 0.00038 31.1 5.3 67 103-176 10-97 (207)
198 KOG3917 Beta-1,4-galactosyltra 63.5 36 0.00078 29.4 7.0 153 63-295 71-227 (310)
199 COG1207 GlmU N-acetylglucosami 63.4 42 0.0009 32.1 8.1 162 103-297 45-220 (460)
200 COG1210 GalU UDP-glucose pyrop 63.4 63 0.0014 29.0 8.8 55 130-184 96-152 (291)
201 PRK13389 UTP--glucose-1-phosph 62.5 98 0.0021 28.2 10.4 102 71-183 33-161 (302)
202 cd04197 eIF-2B_epsilon_N The N 62.0 86 0.0019 26.6 9.6 101 71-183 25-129 (217)
203 cd00505 Glyco_transf_8 Members 61.2 83 0.0018 27.4 9.5 94 77-180 12-118 (246)
204 cd06430 GT8_like_2 GT8_like_2 61.0 1.3E+02 0.0029 27.4 11.5 106 68-183 3-122 (304)
205 KOG4179 Lysyl hydrolase/glycos 60.5 12 0.00027 35.2 4.0 107 66-178 3-132 (568)
206 PHA01631 hypothetical protein 59.2 12 0.00027 30.5 3.4 64 102-172 16-87 (176)
207 PF01755 Glyco_transf_25: Glyc 55.0 1.2E+02 0.0027 25.2 9.8 81 101-182 27-111 (200)
208 PRK00576 molybdopterin-guanine 55.0 69 0.0015 26.3 7.5 51 133-183 47-102 (178)
209 PRK14490 putative bifunctional 54.4 61 0.0013 30.4 7.9 85 76-181 198-284 (369)
210 PLN03193 beta-1,3-galactosyltr 53.9 2.1E+02 0.0045 27.4 15.3 113 63-179 134-259 (408)
211 KOG0799 Branching enzyme [Carb 50.8 87 0.0019 30.3 8.3 103 67-181 104-218 (439)
212 COG0836 {ManC} Mannose-1-phosp 48.1 2E+02 0.0043 26.6 9.5 85 73-171 29-120 (333)
213 PF04028 DUF374: Domain of unk 45.9 1E+02 0.0022 21.6 7.0 61 103-168 9-69 (74)
214 cd03008 TryX_like_RdCVF Trypar 45.3 90 0.002 25.1 6.4 72 103-180 65-136 (146)
215 TIGR02091 glgC glucose-1-phosp 45.0 88 0.0019 29.0 7.4 99 71-183 23-136 (361)
216 COG3967 DltE Short-chain dehyd 44.1 41 0.00089 29.0 4.3 55 68-138 30-84 (245)
217 cd02507 eIF-2B_gamma_N_like Th 43.1 1.1E+02 0.0024 26.0 7.2 97 71-180 25-125 (216)
218 PF01501 Glyco_transf_8: Glyco 41.6 49 0.0011 28.4 4.8 75 102-179 29-120 (250)
219 TIGR00334 5S_RNA_mat_M5 ribonu 41.6 1.1E+02 0.0025 25.4 6.5 64 105-180 4-69 (174)
220 KOG2264 Exostosin EXT1L [Signa 41.1 23 0.0005 34.8 2.7 104 66-186 649-754 (907)
221 PRK14359 glmU bifunctional N-a 38.0 3E+02 0.0066 26.0 10.1 89 71-178 24-115 (430)
222 PRK00560 molybdopterin-guanine 36.8 2.5E+02 0.0055 23.4 9.6 78 76-178 32-113 (196)
223 PRK00725 glgC glucose-1-phosph 36.3 3.5E+02 0.0076 25.9 10.1 99 71-183 40-154 (425)
224 KOG2501 Thioredoxin, nucleored 35.9 2.4E+02 0.0053 23.0 8.5 73 100-178 65-137 (157)
225 PF15176 LRR19-TM: Leucine-ric 35.0 1.8E+02 0.0039 21.7 5.9 11 68-78 73-83 (102)
226 PRK14500 putative bifunctional 34.9 1.3E+02 0.0029 28.0 6.7 50 133-182 220-271 (346)
227 PF02364 Glucan_synthase: 1,3- 34.7 1.2E+02 0.0025 31.7 6.7 218 66-296 190-431 (817)
228 cd01461 vWA_interalpha_trypsin 34.7 2.3E+02 0.0051 22.5 10.0 87 76-167 77-164 (171)
229 PF15609 PRTase_2: Phosphoribo 34.5 2.2E+02 0.0049 24.0 7.3 40 104-143 122-163 (191)
230 PLN03183 acetylglucosaminyltra 33.4 4.5E+02 0.0097 25.3 17.1 108 63-183 75-199 (421)
231 PF09949 DUF2183: Uncharacteri 32.9 1.9E+02 0.0041 21.6 6.0 29 101-130 62-90 (100)
232 PRK05293 glgC glucose-1-phosph 31.7 2.3E+02 0.0051 26.4 8.0 101 71-183 28-142 (380)
233 TIGR00246 tRNA_RlmH_YbeA rRNA 31.1 2.9E+02 0.0062 22.4 11.1 28 157-184 65-93 (153)
234 PF12273 RCR: Chitin synthesis 31.1 46 0.001 26.1 2.6 6 72-77 63-68 (130)
235 PRK00844 glgC glucose-1-phosph 30.2 2.7E+02 0.0059 26.4 8.2 99 71-183 30-142 (407)
236 PF15102 TMEM154: TMEM154 prot 29.5 34 0.00074 27.4 1.6 13 66-78 106-118 (146)
237 PF13407 Peripla_BP_4: Peripla 28.9 3.7E+02 0.0079 22.9 9.3 87 68-166 1-89 (257)
238 PF09886 DUF2113: Uncharacteri 28.7 2.6E+02 0.0056 23.6 6.7 28 156-183 157-184 (188)
239 KOG2733 Uncharacterized membra 28.2 5.2E+02 0.011 24.5 9.0 98 66-183 32-131 (423)
240 COG1861 SpsF Spore coat polysa 28.1 4.1E+02 0.0088 23.2 9.9 99 70-184 21-120 (241)
241 PRK02862 glgC glucose-1-phosph 27.6 2.9E+02 0.0064 26.4 8.0 99 71-183 28-141 (429)
242 PF04724 Glyco_transf_17: Glyc 27.1 3.3E+02 0.007 25.6 7.8 23 156-178 178-200 (356)
243 cd04904 ACT_AAAH ACT domain of 25.5 2.3E+02 0.005 19.5 6.0 27 156-184 40-66 (74)
244 TIGR00639 PurN phosphoribosylg 25.3 4.1E+02 0.0089 22.3 9.0 31 146-176 69-99 (190)
245 PF02590 SPOUT_MTase: Predicte 25.0 3.8E+02 0.0082 21.8 12.5 30 156-185 66-96 (155)
246 TIGR00177 molyb_syn molybdenum 24.8 1.7E+02 0.0036 23.2 4.9 45 68-124 43-91 (144)
247 cd02537 GT8_Glycogenin Glycoge 24.4 3.4E+02 0.0074 23.5 7.2 24 155-179 88-111 (240)
248 PF09151 DUF1936: Domain of un 24.2 15 0.00032 20.9 -0.9 15 67-81 8-22 (36)
249 PF01983 CofC: Guanylyl transf 23.1 89 0.0019 27.0 3.1 49 132-181 64-113 (217)
250 COG0761 lytB 4-Hydroxy-3-methy 22.9 2.4E+02 0.0052 25.5 5.8 75 105-181 159-237 (294)
251 PF13519 VWA_2: von Willebrand 22.8 3.7E+02 0.0081 21.0 7.1 60 101-162 98-158 (172)
252 PRK00103 rRNA large subunit me 22.7 4.2E+02 0.0092 21.5 13.5 29 156-184 66-95 (157)
253 PF13768 VWA_3: von Willebrand 21.6 4E+02 0.0087 20.9 8.6 56 76-138 75-131 (155)
254 KOG2859 DNA repair protein, me 21.6 3.5E+02 0.0075 23.7 6.2 51 132-182 39-97 (293)
255 cd02968 SCO SCO (an acronym fo 21.5 3.8E+02 0.0081 20.5 7.6 71 67-139 23-94 (142)
256 PF13905 Thioredoxin_8: Thiore 20.5 3.2E+02 0.0068 19.2 6.7 62 101-168 33-94 (95)
257 COG0113 HemB Delta-aminolevuli 20.5 4.4E+02 0.0095 24.2 6.9 80 73-163 95-195 (330)
258 cd06533 Glyco_transf_WecG_TagA 20.3 4.8E+02 0.01 21.3 9.4 57 103-163 46-106 (171)
No 1
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=100.00 E-value=5.7e-40 Score=302.49 Aligned_cols=255 Identities=46% Similarity=0.844 Sum_probs=222.2
Q ss_pred CCCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcC
Q 019818 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLG 139 (335)
Q Consensus 62 ~~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~ 139 (335)
....|.+|||||+|||++.|+++|+++.+++.+...+++..++|||||||||+|+|.++++++.+++ +..+++++..+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 4567899999999999999999999998877643222345589999999999999999999988775 33369999999
Q ss_pred CCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh
Q 019818 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219 (335)
Q Consensus 140 ~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 219 (335)
.|.|+++|+|.|++.++||+|+++|+|+..+++.+.++++.+.+..+.++ ++|+|+|.....
T Consensus 146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~------------------dvV~GsR~~~~~ 207 (333)
T PTZ00260 146 RNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGL------------------GIVFGSRNHLVD 207 (333)
T ss_pred CCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCC------------------ceEEeecccccc
Confidence 99999999999999999999999999999999999999999976333333 799999975432
Q ss_pred H-hhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeE
Q 019818 220 K-ALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVN 298 (335)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~ 298 (335)
+ ....+++++++.+..++.+.+.+.+..+.|.+||+++|+|++++.++......+|.||.|+..++.+.|++|.++|+.
T Consensus 208 ~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 208 SDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEcee
Confidence 2 344667899999999999999999999999999999999999999976666678899999999999999999999999
Q ss_pred EEecCCCccc-ccchHHHHHHHHHHHhhhhccceeec
Q 019818 299 WSEIPGSKVN-PLSIPNMLWELALMSVGYRTGMWKVR 334 (335)
Q Consensus 299 ~~~~~~s~~~-~~~~~~~~~~~~~i~~~y~~~~~k~~ 334 (335)
|+++++|+.+ ....+++++..+.+++.|+.+.|+++
T Consensus 288 ~~~~~~Sk~~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 324 (333)
T PTZ00260 288 WTEVEGSKLNVISASIQMARDILLVRSFYLLGIWKVK 324 (333)
T ss_pred eEECCCCeechHHHHHHHHHHHHHHHHHHhcCeeecc
Confidence 9998888887 56789999999999999999999987
No 2
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=264.41 Aligned_cols=301 Identities=49% Similarity=0.795 Sum_probs=256.4
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCccccCCCCCCCCCCCCCCCCC-CceEEEEEeccCCCCChHHHHHHHHHHHHHhh
Q 019818 18 ILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPA-EKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~ 96 (335)
.++.++..+++..+..++...+......+..|-+.....+|+..++. ...+|||||+|||+..|+..++.....++...
T Consensus 18 v~~~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k~~~lp~~~d~~~~~~lsVIVpaynE~~ri~~mldeav~~le~ry 97 (323)
T KOG2977|consen 18 VLLKFLSVYLFESHLPRPALENEETEITLDDPGSIKSRTLPNIRDSPEKMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRY 97 (323)
T ss_pred HHHHHHHHHHhhccCCCccccccceEEEEcCCCCccceeCcccccChhhceeEEEEecCCcccchHHHHHHHHHHHHHHh
Confidence 33344444444466666666666666667777666666677666553 34899999999999999999999988888755
Q ss_pred hcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHH
Q 019818 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 97 ~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~ 176 (335)
...+...+||+||||||+|+|.+++-+++.++...+++|+...+|+||++|...|+.+++|+++++.|||....-..++.
T Consensus 98 ~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ek 177 (323)
T KOG2977|consen 98 LSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEK 177 (323)
T ss_pred ccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHH
Confidence 44555789999999999999999999999888877999999999999999999999999999999999999877667777
Q ss_pred HHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh-HhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCce
Q 019818 177 LESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE-KALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGF 255 (335)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 255 (335)
+...+.+-..++ ...++++|+|.+... +....+++.+.++..+++.+...+....+.|.+|||
T Consensus 178 Le~al~~~~~p~----------------~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~lv~~~a~rsI~DTQcgf 241 (323)
T KOG2977|consen 178 LEKALNDKAGPG----------------PRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKLVWIFAIRSIRDTQCGF 241 (323)
T ss_pred HHHHHHhhcCCC----------------CCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHHHHHHhcCcccccchhH
Confidence 777775321111 112689999999877 888899999999999999999999999999999999
Q ss_pred eeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEecCCCccc-ccchHHHHHHHHHHHhhhhccceeec
Q 019818 256 KMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEIPGSKVN-PLSIPNMLWELALMSVGYRTGMWKVR 334 (335)
Q Consensus 256 ~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~~~s~~~-~~~~~~~~~~~~~i~~~y~~~~~k~~ 334 (335)
++|+|.+.+++++.....+|.||.|+.+.+.+.+..++++|+.|+|-++|+.. .+.+++|.++...++++|..+.|++.
T Consensus 242 klftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~v~w~EIdgSKi~~~~s~~~m~~dlv~i~v~y~~g~w~~~ 321 (323)
T KOG2977|consen 242 KLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIPVEWTEIDGSKITPVWSWLQMGSDLVLIRVRYLTGIWKRT 321 (323)
T ss_pred HHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEeeeEEEEcCCceeehHHHHHHHhhhhheEeeehhcceEEec
Confidence 99999999999999999999999999999999999999999999999999998 58999999999999999999999863
No 3
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=100.00 E-value=7.6e-34 Score=251.64 Aligned_cols=230 Identities=23% Similarity=0.355 Sum_probs=188.2
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
...|++|||||+|||++.|+.+++++.+.+. ...++|||||||||+|+|.++++++.++++...+.++..++|.
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~------~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~ 79 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQ------DVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKL 79 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhc------cCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 3457899999999999999999988876543 3448999999999999999999999888765578888888999
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|++.|+|.|++.++||+++++|+|+.++|++|.++++.+.++. . ++|.|++.... ...
T Consensus 80 G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~---~------------------~~v~g~r~~~~-~~~ 137 (243)
T PLN02726 80 GLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETG---A------------------DIVTGTRYVKG-GGV 137 (243)
T ss_pred CHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcC---C------------------cEEEEccccCC-CCc
Confidence 9999999999999999999999999999999999999986532 1 78888875322 122
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI 302 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~ 302 (335)
....+.+++.+...+.+.....+..+.+.+|++++|||+++++++......+|.+|.|++.++.++|+++.++|+.+.++
T Consensus 138 ~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r 217 (243)
T PLN02726 138 HGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDR 217 (243)
T ss_pred CCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCC
Confidence 23445677777777777777777888999999999999999999655566788889999999999999999999988875
Q ss_pred --CCCcccccchHHHHHHHH
Q 019818 303 --PGSKVNPLSIPNMLWELA 320 (335)
Q Consensus 303 --~~s~~~~~~~~~~~~~~~ 320 (335)
+.|+.+...+++++....
T Consensus 218 ~~g~s~~~~~~~~~~~~~~~ 237 (243)
T PLN02726 218 VYGESKLGGSEIVQYLKGLL 237 (243)
T ss_pred CCCcccCCHHHHHHHHHHHH
Confidence 456655555555555443
No 4
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=100.00 E-value=2e-33 Score=226.18 Aligned_cols=230 Identities=23% Similarity=0.401 Sum_probs=204.9
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
++.||++|+|||.++|+-++.-+..... +...++|||+|||+|.|+|.++++++++.+.+.+|.+..+....|.+
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~-----e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLg 77 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMS-----EEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLG 77 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhh-----hhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccch
Confidence 4589999999999999966665555444 36778999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.|...|+++|+|++++++|||...+|.++.++++..+++ .+ ++|.|.|+. .+.+...|
T Consensus 78 tAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~---~~------------------div~GTRYa-~~ggV~gW 135 (238)
T KOG2978|consen 78 TAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEG---NY------------------DIVLGTRYA-GGGGVYGW 135 (238)
T ss_pred HHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhcc---Cc------------------ceeeeeeEc-CCCceecc
Confidence 999999999999999999999999999999999887654 23 899999974 44556679
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec--C
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI--P 303 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~--~ 303 (335)
+..|++++...+++.+.+.+....|.+|.|+++++++++.+..+..+.+|.|.+|+..|+.+.|+.|.++|+++.++ +
T Consensus 136 ~mkRk~IS~gAn~la~~ll~~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~~G 215 (238)
T KOG2978|consen 136 DMKRKIISRGANFLARILLNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFVDRTYG 215 (238)
T ss_pred hhhHHHHhhhhHHHHHHhccCCCccCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEEeeccc
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999886 7
Q ss_pred CCcccccchHHHHHHHHHH
Q 019818 304 GSKVNPLSIPNMLWELALM 322 (335)
Q Consensus 304 ~s~~~~~~~~~~~~~~~~i 322 (335)
.|+.+..-.+.++++.+.+
T Consensus 216 eSKLg~~eIv~ylk~l~~L 234 (238)
T KOG2978|consen 216 ESKLGGKEIVQYLKGLLYL 234 (238)
T ss_pred cccccHHHHHHHHHHHhhh
Confidence 7888888888887766543
No 5
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=100.00 E-value=1.2e-32 Score=238.72 Aligned_cols=211 Identities=52% Similarity=0.929 Sum_probs=183.1
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+|||++.|+++|+++.++... |+..++|||||||||+|+|.++++++.++++. .++++..++|.|+++|+|
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~----~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~~ 75 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEE----RPSFSYEIIVVDDGSKDGTAEVARKLARKNPA-LIRVLTLPKNRGKGGAVR 75 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhc----cCCCCEEEEEEeCCCCCchHHHHHHHHHhCCC-cEEEEEcccCCCcHHHHH
Confidence 6999999999999999999997663 35678999999999999999999999888773 258999999999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.|+||+|+++|+|+.++|+++.++++.+.+... ++|.|++............+.+
T Consensus 76 ~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~---------------------~~v~g~r~~~~~~~~~~~~~~~ 134 (211)
T cd04188 76 AGMLAARGDYILFADADLATPFEELEKLEEALKTSGY---------------------DIAIGSRAHLASAAVVKRSWLR 134 (211)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCC---------------------cEEEEEeeccCCcccccccHHH
Confidence 9999999999999999999999999999999654321 7888988754332224457788
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEecCCCc
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEIPGSK 306 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~~~s~ 306 (335)
.+.....+.+...+.+..+.+.+||+++|+|+++++++......+|.+|.|++.|+.+.|+++.++|+.|+++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi~~~~~~~~~ 211 (211)
T cd04188 135 NLLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIPGSK 211 (211)
T ss_pred HHHHHHHHHHHHHHcCCCCcccccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCcceecCCCCC
Confidence 88888888888888888899999999999999999997666667888999999999999999999999999998774
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=2.2e-31 Score=254.22 Aligned_cols=238 Identities=19% Similarity=0.212 Sum_probs=176.0
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
...|+|||+||+|||++.+.+|++++.+ |.++++||+||||||+|+|.+.++++.++++ ++++++.++|.
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~--------q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~--~v~~i~~~~n~ 120 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLA--------LRYPNYEVIAINDGSSDNTGEILDRLAAQIP--RLRVIHLAENQ 120 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--cEEEEEcCCCC
Confidence 3457899999999999999999999987 5677899999999999999999999999888 89999988899
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
||+.|+|.|++.+++|+++++|+|+.++|++|.++++.++++++. ++|.|.....+....
T Consensus 121 Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--------------------~~v~g~~~~~~~~~~ 180 (420)
T PRK11204 121 GKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--------------------GAVTGNPRIRNRSTL 180 (420)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--------------------EEEECCceeccchhH
Confidence 999999999999999999999999999999999999999876554 455554322111111
Q ss_pred hhhhhhHHHHHH-HHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee--eEE
Q 019818 223 ATRKWYRNFLMK-GFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS--VNW 299 (335)
Q Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p--~~~ 299 (335)
........+... ..........+ ......|++.+|||++++++.+ +....+.||.|++.|+.++|+++.+.| ..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~vgg-~~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~ 258 (420)
T PRK11204 181 LGRIQVGEFSSIIGLIKRAQRVYG-RVFTVSGVITAFRKSALHEVGY-WSTDMITEDIDISWKLQLRGWDIRYEPRALCW 258 (420)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhC-CceEecceeeeeeHHHHHHhCC-CCCCcccchHHHHHHHHHcCCeEEeccccEEE
Confidence 011000011000 00001111222 2233445667999999999843 334456789999999999999999998 566
Q ss_pred EecCCC-cccccchHHHHHHHHHHHhhhhcccee
Q 019818 300 SEIPGS-KVNPLSIPNMLWELALMSVGYRTGMWK 332 (335)
Q Consensus 300 ~~~~~s-~~~~~~~~~~~~~~~~i~~~y~~~~~k 332 (335)
.+.|.+ +.-.+|..|+..+.++..+++....++
T Consensus 259 ~~~p~t~~~~~~Qr~RW~~G~~~~l~~~~~~~~~ 292 (420)
T PRK11204 259 ILMPETLKGLWKQRLRWAQGGAEVLLKNFRRLWR 292 (420)
T ss_pred eECcccHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence 666665 334577788888888877777654443
No 7
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=3.6e-31 Score=253.97 Aligned_cols=237 Identities=20% Similarity=0.215 Sum_probs=175.2
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..|.|||+||+|||+..+++|++++++ |.++++||++|||||+|+|.+.++++.++++ ++++++.++|.|
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~--------q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv~~~~n~G 142 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALA--------QTYTNIEVIAINDGSSDDTAQVLDALLAEDP--RLRVIHLAHNQG 142 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence 457899999999999999999999887 5677899999999999999999999998888 899999888999
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
|+.|+|.|++.+++|+++++|||+.++|+++.++++.+.++++. .+|.|...........
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~--------------------g~v~g~~~~~~~~~~~ 202 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRT--------------------GAVTGNPRIRTRSTLI 202 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCe--------------------EEEEccceecCCCcch
Confidence 99999999999999999999999999999999999999876554 4455543221111000
Q ss_pred hhhhhHHHHHHHHHHH--HHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee--eEE
Q 019818 224 TRKWYRNFLMKGFHLV--VILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS--VNW 299 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p--~~~ 299 (335)
.+.....+. ...... .....+ .+....|++.+|||+++++++ ++......||.|++.|++++|+++.+.| ..+
T Consensus 203 ~~~~~~e~~-~~~~~~~~~~~~~g-~~~~~sG~~~~~rr~al~~vG-g~~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~ 279 (444)
T PRK14583 203 GRVQVGEFS-SIIGLIKRTQRVYG-QVFTVSGVVAAFRRRALADVG-YWSPDMITEDIDISWKLQLKHWSVFFEPRGLCW 279 (444)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHhC-CceEecCceeEEEHHHHHHcC-CCCCCcccccHHHHHHHHHcCCeEEEeeccEEe
Confidence 000000110 111111 111222 222334556799999999994 3344557889999999999999999998 566
Q ss_pred EecCCC-cccccchHHHHHHHHHHHhhhhccceee
Q 019818 300 SEIPGS-KVNPLSIPNMLWELALMSVGYRTGMWKV 333 (335)
Q Consensus 300 ~~~~~s-~~~~~~~~~~~~~~~~i~~~y~~~~~k~ 333 (335)
.+.+.+ +..++|..|+..+..+..+++....|++
T Consensus 280 ~~~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~~~~ 314 (444)
T PRK14583 280 ILMPETLRGLWKQRLRWAQGGAEVFLKNMFKLWRW 314 (444)
T ss_pred eeCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHhCc
Confidence 666665 3345777888877777777666555543
No 8
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.97 E-value=1.9e-29 Score=232.02 Aligned_cols=217 Identities=26% Similarity=0.408 Sum_probs=177.5
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.+++|||||+|||++.|+++++++.+.+.+ ...++||++|||||+|+|.++++++.++.+ .++..+..+.|.|+
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~-----~~~~~EIIvVDDgS~D~T~~il~~~~~~~~-~~v~~i~~~~n~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACES-----LGKEYEILLIDDGSSDNSAEMLVEAAQAPD-SHIVAILLNRNYGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHh-----CCCCEEEEEEeCCCCCcHHHHHHHHHhhcC-CcEEEEEeCCCCCH
Confidence 356999999999999999999999876553 456799999999999999999998876532 25777777889999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
+.|++.|+++|+||+++++|+|.+.+|+.+.++++.++++. ++|.|.+... .
T Consensus 79 ~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~----------------------DvV~~~r~~~------~ 130 (325)
T PRK10714 79 HSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGY----------------------DVVGTVRQNR------Q 130 (325)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhC----------------------CEEEEEEcCC------C
Confidence 99999999999999999999999999999999999996432 7777766421 2
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec--
Q 019818 225 RKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI-- 302 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~-- 302 (335)
.++++++.+..++.+.+.+.+.++.|.+|++++|+|++++.+..... . ...+...+...|+++.++|+.+.++
T Consensus 131 ~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~~~l~~~~~--~---~~~~~~l~~~~g~~i~evpv~~~~R~~ 205 (325)
T PRK10714 131 DSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHE--R---STFIPILANTFARRAIEIPVHHAEREF 205 (325)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHHHHHHHCCC--C---ccHHHHHHHHcCCCEEEEEeEecCccC
Confidence 46788899999999989999999999999999999999999842222 1 1224566778899999999998876
Q ss_pred CCCcccccchHHHHHHHH
Q 019818 303 PGSKVNPLSIPNMLWELA 320 (335)
Q Consensus 303 ~~s~~~~~~~~~~~~~~~ 320 (335)
+.|+.+.++.++.+.+.+
T Consensus 206 G~Sk~~~~~~~~~~~~~~ 223 (325)
T PRK10714 206 GDSKYSFMRLINLMYDLV 223 (325)
T ss_pred CcCCCCHHHHHHHHHHHH
Confidence 567887777777665544
No 9
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.97 E-value=1.4e-29 Score=220.90 Aligned_cols=219 Identities=26% Similarity=0.461 Sum_probs=173.8
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|+++|+++.++.. ..++|||||||||+|+|.++++++.++.+ .+.++..++|.|++.|+|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~-------~~~~eiiiVDd~S~d~t~~~~~~~~~~~~--~i~~~~~~~n~G~~~a~n 71 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK-------GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAYI 71 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc-------CCCeEEEEEeCCCCCChHHHHHHHHHhCC--ceEEEecCCCCChHHHHH
Confidence 699999999999999999998532 25799999999999999999999988887 789999999999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.|+||+|+++|+|+.++|++|..+++.+.... . ++|.|.+..... ......+.+
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~--------------------~~v~g~~~~~~~-~~~~~~~~~ 129 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGG-A--------------------DLVIGSRYVEGG-GVEGWGLKR 129 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCC-C--------------------CEEEEeeeecCC-ccCCCcHHH
Confidence 999999999999999999999999999999874432 1 567776643221 122334455
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec--CCCcc
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI--PGSKV 307 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~--~~s~~ 307 (335)
...........+........+.++++++++|+++++++......+|.+|.|++.++.++|+++.++|..+..+ +.|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s~~ 209 (224)
T cd06442 130 KLISRGANLLARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKL 209 (224)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcCce
Confidence 5555544444444456778888999999999999999634445678889999999999999999999776554 45666
Q ss_pred cccchHHHHHHH
Q 019818 308 NPLSIPNMLWEL 319 (335)
Q Consensus 308 ~~~~~~~~~~~~ 319 (335)
+...+++++...
T Consensus 210 ~~~~~~~~~~~~ 221 (224)
T cd06442 210 GGKEIVEYLKGL 221 (224)
T ss_pred eHHHHHHHHHHH
Confidence 666666666543
No 10
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.97 E-value=4.6e-29 Score=238.84 Aligned_cols=235 Identities=13% Similarity=0.153 Sum_probs=165.0
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..|.||||||+|||++.+.+||+++.++.+ |...+||+||||||+|+|.++++++.++++ ++.++..+++.|
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~q~y------p~~~~eIiVVDd~StD~T~~il~~~~~~~~--~v~v~~~~~~~G 118 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYNQTY------PIELIDIILANNQSTDDSFQVFCRAQNEFP--GLSLRYMNSDQG 118 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhcCC------CCCCeEEEEEECCCChhHHHHHHHHHHhCC--CeEEEEeCCCCC
Confidence 457799999999999999999999988422 344589999999999999999999988888 788877778899
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
|+.|+|.|++.+++|+|+++|+|+.++|++++++++.|.++++. +++.|......+....
T Consensus 119 ka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v--------------------~~v~g~~~~~~~~~~~ 178 (439)
T TIGR03111 119 KAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDI--------------------HAMTGVILTDKELIEK 178 (439)
T ss_pred HHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCe--------------------EEEEeEEecCchhhhh
Confidence 99999999999999999999999999999999999999876543 3333432211110000
Q ss_pred hhhhhHHHHHHH--HHH----HH-HHH--hCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHH-cCCCEE
Q 019818 224 TRKWYRNFLMKG--FHL----VV-ILT--AGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKR-FGIPII 293 (335)
Q Consensus 224 ~~~~~~~~~~~~--~~~----~~-~~~--~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~-~G~~i~ 293 (335)
............ +.. .. +.. .........|++.+|||++++++++ +.....+||.|++.++.. .|+++.
T Consensus 179 ~~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vgg-f~~~~i~ED~~l~~rl~~~~g~kv~ 257 (439)
T TIGR03111 179 TKGRFLKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQL-YNSETVGEDTDMTFQIRELLDGKVY 257 (439)
T ss_pred hcchhhhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCC-CCCCCcCccHHHHHHHHHhcCCeEE
Confidence 111111111110 111 10 000 0112233455677899999999843 333456899999999974 689999
Q ss_pred Eee--eEEEecCCC-cccccchHHHHHHHHHHHhhhh
Q 019818 294 EIS--VNWSEIPGS-KVNPLSIPNMLWELALMSVGYR 327 (335)
Q Consensus 294 ~~p--~~~~~~~~s-~~~~~~~~~~~~~~~~i~~~y~ 327 (335)
+.| +.+.+.+.+ +....|..|+..+.+++...+.
T Consensus 258 ~~~~a~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~ 294 (439)
T TIGR03111 258 LCENAIFYVDPIDGLNKLYTQRQRWQRGELEVSHMFF 294 (439)
T ss_pred ECCCCEEEEECCcCHHHHHHHHHHHhccHHHHHHHHH
Confidence 987 556655543 4455666777777776665554
No 11
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.96 E-value=1.2e-28 Score=218.12 Aligned_cols=231 Identities=13% Similarity=0.093 Sum_probs=158.2
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|.||||||+|||++.|.++|+|+.++.+ +...+||+||||+|+|+|.++++++... +..++.++....+.||+
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y------~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~ 73 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDY------PRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKP 73 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcC------CcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchH
Confidence 4699999999999999999999987422 3335999999999999999999887532 21145555555778999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHh-ccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV-GRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
.|+|.|+++++||+|+++|+|+.++|+++.++++.+.++ ++. .++.|........
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v--------------------~~~~~~~~~~~~~---- 129 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKL--------------------ACVQAPLNYYNAR---- 129 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCE--------------------EEEeCceEeeCCC----
Confidence 999999999999999999999999999999999999754 221 1222221111100
Q ss_pred hhhhHHHHH----HHHHHHHHHHhCCCCcc-CCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee-E
Q 019818 225 RKWYRNFLM----KGFHLVVILTAGPGIRD-TQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV-N 298 (335)
Q Consensus 225 ~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~-~ 298 (335)
..+..+... ..+.............. ..|++.+|||++++++++. ....+.+|.|++.|+..+|+++.++|. .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~-~~~~~~eD~~l~~rl~~~G~r~~~~~~~~ 208 (241)
T cd06427 130 ENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGW-DPFNVTEDADLGLRLARAGYRTGVLNSTT 208 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCC-CcccchhhHHHHHHHHHCCceEEEecccc
Confidence 011111111 11111111111112222 2334568999999999443 334567899999999999999999984 4
Q ss_pred EEecCCC-cccccchHHHHHHHHHHHhhhhc
Q 019818 299 WSEIPGS-KVNPLSIPNMLWELALMSVGYRT 328 (335)
Q Consensus 299 ~~~~~~s-~~~~~~~~~~~~~~~~i~~~y~~ 328 (335)
+.+.+.+ +....+..||..+.+++...+.+
T Consensus 209 ~~~~~~~~~~~~~q~~Rw~~g~~~~~~~~~~ 239 (241)
T cd06427 209 LEEANNALGNWIRQRSRWIKGYMQTWLVHMR 239 (241)
T ss_pred cccCcHhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 4444444 33447888888888888776544
No 12
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.96 E-value=5.7e-28 Score=207.04 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=137.9
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G-- 143 (335)
|.||||||+|||++.|+++|+++.+ |.++++|||||||+|+|+|.++++++.++++..+++++..+.+.|
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~--------q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 72 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQ--------QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN 72 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHh--------ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC
Confidence 4599999999999999999999988 466779999999999999999999998888855567777665544
Q ss_pred -hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 144 -k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|+.++|.|++.++||+++++|+|+.++|++|..+++.+.+ ++. ++|.|.
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~-~~~--------------------~~v~~~--------- 122 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMD-PGV--------------------GLVTCL--------- 122 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhC-CCC--------------------CeEEee---------
Confidence 6678999999999999999999999999999999999843 222 455553
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCEEEeee
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPIIEISV 297 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i~~~p~ 297 (335)
...|++.+++|++++++.+.... ...++|.+|+.|+.++|+++.+.|.
T Consensus 123 ---------------------------~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 123 ---------------------------CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred ---------------------------cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 13455679999999999443221 2346799999999999999999984
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.96 E-value=3.5e-27 Score=221.55 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=145.6
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC-
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG- 143 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G- 143 (335)
.|.||||||+|||++.|++||+|+.+ |+++++||+++||+|+|+|.++++++.+++|..+++++..+++.|
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~--------q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCR--------QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHh--------cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCC
Confidence 57799999999999999999999988 577789999999999999999999999999866688887766655
Q ss_pred --hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh
Q 019818 144 --KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 144 --k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 221 (335)
|..+++.+++.+++|+++++|+|+.++|++|+++++.+++ ++. ++|.|.......
T Consensus 112 ~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~-~~v--------------------~~V~~~~~~~~~-- 168 (373)
T TIGR03472 112 NRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLAD-PDV--------------------GLVTCLYRGRPV-- 168 (373)
T ss_pred ChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcC-CCc--------------------ceEeccccCCCC--
Confidence 7788888999999999999999999999999999999953 332 345442211111
Q ss_pred hhhhhhhHHHHH----HHHH--HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccccchHHHHHHhHHcCCCEEE
Q 019818 222 LATRKWYRNFLM----KGFH--LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 222 ~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
.++...... ..+. .......+ ......|.+.+|||++++++++... .....||.+++.++.++|+++.+
T Consensus 169 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~ 244 (373)
T TIGR03472 169 ---PGFWSRLGAMGINHNFLPSVMVARALG-RARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVL 244 (373)
T ss_pred ---CCHHHHHHHHHhhhhhhHHHHHHHhcc-CCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEe
Confidence 011111111 1010 00111112 1122445567999999999954432 23456899999999999999998
Q ss_pred eee
Q 019818 295 ISV 297 (335)
Q Consensus 295 ~p~ 297 (335)
.|.
T Consensus 245 ~~~ 247 (373)
T TIGR03472 245 APV 247 (373)
T ss_pred cch
Confidence 873
No 14
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.95 E-value=3.3e-26 Score=215.69 Aligned_cols=199 Identities=22% Similarity=0.206 Sum_probs=143.0
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEECCCCcchHHHHHHHHHHcCCC-cEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVD-NVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~i~vi~~~~ 140 (335)
+..|+||||||+|||++.|++||+++.+ |+++ ++|||||||+|+|+|.++++++.+++|.. ++++++.++
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~--------q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~ 108 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLE--------QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQP 108 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHh--------CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCC
Confidence 3467899999999999999999999988 3454 69999999999999999999998877632 588887532
Q ss_pred ----CCChHHHHHHHHHhcC-----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeee
Q 019818 141 ----NHGKGEAIRKGMLHSR-----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAF 211 (335)
Q Consensus 141 ----~~Gk~~aln~g~~~a~-----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (335)
+.||..|+|.|++.++ +|+++++|+|+.++|++++++++.+++.+. +++.
T Consensus 109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~---------------------~~vs 167 (384)
T TIGR03469 109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGL---------------------DLVS 167 (384)
T ss_pred CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCC---------------------CEEE
Confidence 3589999999999999 999999999999999999999999976431 3343
Q ss_pred ecchhhhhHhhhhhhhhHHHHHHHHHHHH------HHHhC--CCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHH
Q 019818 212 GSRAHLEEKALATRKWYRNFLMKGFHLVV------ILTAG--PGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELV 282 (335)
Q Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~ 282 (335)
+....... +.+.+.....+.... ..... .......|++.++||++++++++.... ..+.+|.+++
T Consensus 168 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~ 241 (384)
T TIGR03469 168 LMVRLRCE------SFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLA 241 (384)
T ss_pred ecccccCC------CHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHH
Confidence 32211110 111111110110111 10110 112224567889999999999443321 3466899999
Q ss_pred HHhHHcCCCEEEee
Q 019818 283 YLCKRFGIPIIEIS 296 (335)
Q Consensus 283 ~r~~~~G~~i~~~p 296 (335)
.++.++|+++....
T Consensus 242 ~r~~~~G~~v~~~~ 255 (384)
T TIGR03469 242 AAVKRSGGRIWLGL 255 (384)
T ss_pred HHHHHcCCcEEEEe
Confidence 99999999998864
No 15
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.95 E-value=7e-26 Score=227.22 Aligned_cols=230 Identities=11% Similarity=0.029 Sum_probs=157.0
Q ss_pred CCCceEEEEEeccCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 019818 63 PAEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~ 141 (335)
...|+|+|+||+|||+. .+++++.+++++. +|..++||+|+||||+|+|.+++++. +++++.+++|
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~d------YP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGID------WPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTH 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhcc------CCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCC
Confidence 34588999999999985 4567887777642 35567999999999999999888765 6888888765
Q ss_pred C-ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 142 H-GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 142 ~-Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
. ||++|+|.|+++++||+|+++|||+.+++++|++++..|.++++. .+|.+.....+.+
T Consensus 324 ~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~V--------------------glVQtp~~f~n~d 383 (852)
T PRK11498 324 EHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKL--------------------AMMQTPHHFFSPD 383 (852)
T ss_pred CcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCe--------------------EEEEcceeccCCc
Confidence 4 599999999999999999999999999999999999998776654 3444432111100
Q ss_pred hhhh-hhhhHHHHH---HHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 221 ALAT-RKWYRNFLM---KGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 221 ~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
.... -...+...+ ..+................|++.++||++++++++. .....+||.|++.|+.++|+++.+++
T Consensus 384 p~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGf-d~~titED~dlslRL~~~Gyrv~yl~ 462 (852)
T PRK11498 384 PFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGI-AVETVTEDAHTSLRLHRRGYTSAYMR 462 (852)
T ss_pred hHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCC-CCCccCccHHHHHHHHHcCCEEEEEe
Confidence 0000 000000000 011111111111111223445678999999999443 33457899999999999999999986
Q ss_pred --eEEEecCCCcc-cccchHHHHHHHHHHHhhh
Q 019818 297 --VNWSEIPGSKV-NPLSIPNMLWELALMSVGY 326 (335)
Q Consensus 297 --~~~~~~~~s~~-~~~~~~~~~~~~~~i~~~y 326 (335)
..+...+.+-. -.+|..|+..+..++.+..
T Consensus 463 ~~~a~glaPesl~~~~~QR~RWarG~lQi~r~~ 495 (852)
T PRK11498 463 IPQAAGLATESLSAHIGQRIRWARGMVQIFRLD 495 (852)
T ss_pred ccceeEECCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444433 2367778888888777653
No 16
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.95 E-value=1e-26 Score=204.33 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=140.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHG 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~vi~~~~~~G 143 (335)
|+||||||+|||++.|.++|+++.++. ++...+||||+|| |+|+|.+++++..++++ ..+++++...++.|
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~------~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G 73 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALD------YPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTG 73 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcC------CCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCC
Confidence 459999999999999999999998742 2334589999998 99999999998876543 22577777766677
Q ss_pred -hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 144 -k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|+.|+|.|++.++||||+++|+|+.++|++|.++...+. +++. .+|.|........
T Consensus 74 ~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~v--------------------~~v~~~~~~~~~~-- 130 (232)
T cd06437 74 YKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPKL--------------------GFVQTRWGHINAN-- 130 (232)
T ss_pred CchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCCe--------------------EEEecceeeEcCC--
Confidence 899999999999999999999999999999999777663 3332 3444432211110
Q ss_pred hhhhhhHHHHHHHHH--HHH-H--HHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-
Q 019818 223 ATRKWYRNFLMKGFH--LVV-I--LTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS- 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p- 296 (335)
..+.......... ... . ...........|++.+|||++++++.+. ....+.+|.+|+.|+..+|+++.++|
T Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~-~~~~~~ED~~l~~rl~~~G~~~~~~~~ 207 (232)
T cd06437 131 --YSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAGGW-NHDTLTEDLDLSYRAQLKGWKFVYLDD 207 (232)
T ss_pred --CchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhCCC-CCCcchhhHHHHHHHHHCCCeEEEecc
Confidence 0111111110000 000 0 1111111223344558999999998433 33456789999999999999999998
Q ss_pred -eEEEecCCC
Q 019818 297 -VNWSEIPGS 305 (335)
Q Consensus 297 -~~~~~~~~s 305 (335)
..+...+.+
T Consensus 208 ~~v~~~~~~~ 217 (232)
T cd06437 208 VVVPAELPAS 217 (232)
T ss_pred ceeeeeCCcC
Confidence 444444444
No 17
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.95 E-value=2.1e-25 Score=224.52 Aligned_cols=233 Identities=16% Similarity=0.106 Sum_probs=154.3
Q ss_pred CCCceEEEEEeccCCCCCh-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch--------------HHHHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHRL-PGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT--------------KRVAFDFVRK 127 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l-~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t--------------~~~~~~~~~~ 127 (335)
...|+|||+||+|||+..+ ++|++++.++ ++|..++||+|+||||+|+| .+.+++++++
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~------dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~ 201 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNM------DYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRK 201 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhC------CCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHH
Confidence 4457899999999999655 5688887663 13445799999999999997 3455666665
Q ss_pred cCCCcEEEEEcCCCC-ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCC
Q 019818 128 YTVDNVRIILLGRNH-GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDI 206 (335)
Q Consensus 128 ~~~~~i~vi~~~~~~-Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
. +++++.+++|. +|++|+|.|+++++||+|+++|||+.++|++|.+++..|.++++.
T Consensus 202 ~---~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v------------------- 259 (713)
T TIGR03030 202 L---GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKL------------------- 259 (713)
T ss_pred c---CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCE-------------------
Confidence 4 58888888775 599999999999999999999999999999999999999776554
Q ss_pred CeeeeecchhhhhHhhhhh-hhhHHH---HHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHH
Q 019818 207 PIAAFGSRAHLEEKALATR-KWYRNF---LMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELV 282 (335)
Q Consensus 207 ~~~v~g~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~ 282 (335)
.+|.+.....+.+..... ...... ....+..........+.....|++.++||++++++++. ......||.+++
T Consensus 260 -~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf-~~~~vtED~~l~ 337 (713)
T TIGR03030 260 -FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGI-AGETVTEDAETA 337 (713)
T ss_pred -EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCC-CCCCcCcHHHHH
Confidence 234332211110000000 000000 00111111111111111223344678999999999443 334568899999
Q ss_pred HHhHHcCCCEEEee--eEEEecCCC-cccccchHHHHHHHHHHHhh
Q 019818 283 YLCKRFGIPIIEIS--VNWSEIPGS-KVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 283 ~r~~~~G~~i~~~p--~~~~~~~~s-~~~~~~~~~~~~~~~~i~~~ 325 (335)
.|+.++|+++.++| ..+...+.+ +.-.+|..|+..+.+++.+.
T Consensus 338 ~rL~~~G~~~~y~~~~~~~g~~p~sl~~~~~Qr~RWa~G~~qi~~~ 383 (713)
T TIGR03030 338 LKLHRRGWNSAYLDRPLIAGLAPETLSGHIGQRIRWAQGMMQIFRL 383 (713)
T ss_pred HHHHHcCCeEEEeccccccccCCCCHHHHHHHHHHHhcChHHHHhh
Confidence 99999999999997 334334444 22346666777777776553
No 18
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.94 E-value=3.3e-26 Score=200.81 Aligned_cols=199 Identities=14% Similarity=0.098 Sum_probs=140.1
Q ss_pred ceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 66 ~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
|.||||||+|||+ +.++++|+|+++ |++++ +||+||||+|+|+|.++++++..++ ++.++..+.|.
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~ 69 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALA--------IDYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNR 69 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHh--------cCCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCC
Confidence 4599999999987 568889999987 45666 9999999999999999999987654 35666666665
Q ss_pred C-hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh
Q 019818 143 G-KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 143 G-k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 221 (335)
| |++++|.|++.+++|+++++|+|+.++|++|.++++.+.++++. .+|.|.........
T Consensus 70 ~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~--------------------~~v~~~~~~~~~~~ 129 (234)
T cd06421 70 HAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKV--------------------ALVQTPQFFYNPDP 129 (234)
T ss_pred CCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCe--------------------EEEecceEEecCCc
Confidence 5 78899999999999999999999999999999999999875443 34444322111110
Q ss_pred hh-hhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 222 LA-TRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
.. .............................|++.+|||++++++++. ....+.+|.+++.|+..+|+++.++|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ig~~-~~~~~~eD~~l~~r~~~~g~~i~~~~ 204 (234)
T cd06421 130 FDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDEIGGF-PTDSVTEDLATSLRLHAKGWRSVYVP 204 (234)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHHhCCC-CccceeccHHHHHHHHHcCceEEEec
Confidence 00 0000000001111111111111223334556779999999999433 33456789999999999999999998
No 19
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.94 E-value=4e-26 Score=208.33 Aligned_cols=210 Identities=20% Similarity=0.150 Sum_probs=139.8
Q ss_pred EEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH--HHHcCCCcEEEEEcCCCCChH
Q 019818 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF--VRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 69 sViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~--~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|||||+||++ +.|.+||+|+.++.. +...+|||||||||+|+|.+.+.+. .+..+ +++++..++|.|.+
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~------~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~--~v~vi~~~~n~G~~ 72 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTP------PELLKEIILVDDFSDKPELKLLLEEYYKKYLP--KVKVLRLKKREGLI 72 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCc------hhcCCEEEEEECCCCchHHHHHHHHHHhhcCC--cEEEEEcCCCCCHH
Confidence 6999999999 999999999998422 2234699999999999999988762 23334 79999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccc-cccccCCCeeeeecchhhhhHhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS-TFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
.|+|.|++.|+||+|+++|+|+.++|++|..|++.+.+++.. ++.|.....+. .+.+..+...+.|.. .
T Consensus 73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~~~~~~~~~~~~~~~~~~~~~~~---------~ 142 (299)
T cd02510 73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPIIDVIDADTFEYRGSSGDARGGF---------D 142 (299)
T ss_pred HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEeeeccccCCCeeEecCCCceeEEe---------c
Confidence 999999999999999999999999999999999999876543 22232211111 111110000000000 0
Q ss_pred hhhhHHHHHHHHHH--HHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCEEEee
Q 019818 225 RKWYRNFLMKGFHL--VVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 225 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
+............. ..............|++.++||++++++++... ...+ .+|.||++|+..+|+++.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p 218 (299)
T cd02510 143 WSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVP 218 (299)
T ss_pred ccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEee
Confidence 00000000000000 000001122334557788999999999943322 1222 479999999999999999999
No 20
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.6e-25 Score=214.92 Aligned_cols=228 Identities=22% Similarity=0.268 Sum_probs=167.3
Q ss_pred CceEEEEEeccCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCC
Q 019818 65 EKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNH 142 (335)
Q Consensus 65 ~~~vsViip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~ 142 (335)
.|+++|+||+|||++ .++++++++.+ |+++++||++|||+|+|+|.+++++...+++ .+++++.. .++.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~--------~dyp~~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 123 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLS--------QDYPRYEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYPEKKNG 123 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHh--------CCCCCceEEEECCCCChhHHHHHHHHHhhcC-cceEEEeccccCc
Confidence 588999999999998 89999988888 6888899999999999999999999999883 15666644 5789
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
||++|+|.|+..+++|+|+++|||+.++||+|.+++..|.+.+.. .++|..........
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~---------------------~v~~~~~~~~~~~~ 182 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG---------------------AVVGTPRIRNRPDP 182 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee---------------------EEeCCceeeecCCh
Confidence 999999999999999999999999999999999999999765432 23333321111000
Q ss_pred hhhhhhHHHHHHHH----H-HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-
Q 019818 223 ATRKWYRNFLMKGF----H-LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS- 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p- 296 (335)
..+..+.....+ . ...............|++.++||+++++++ ++.....+||.+++.++..+|+++.++|
T Consensus 183 --~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g-~~~~~~i~ED~~lt~~l~~~G~~~~~~~~ 259 (439)
T COG1215 183 --SNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG-GWLEDTITEDADLTLRLHLRGYRVVYVPE 259 (439)
T ss_pred --hhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC-CCCCCceeccHHHHHHHHHCCCeEEEeec
Confidence 011111111111 1 111111112344455667899999999994 4555677889999999999999999997
Q ss_pred -eEEEecCCC-cccccchHHHHHHHHHHHhh
Q 019818 297 -VNWSEIPGS-KVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 297 -~~~~~~~~s-~~~~~~~~~~~~~~~~i~~~ 325 (335)
+.+.+.+.+ +..++|..|+..+.++....
T Consensus 260 ~~~~~~~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 260 AIVWTEAPETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred ceEeeeCcccHHHHHHHHHHHHcccceeeeh
Confidence 467766666 34557777887777766653
No 21
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.94 E-value=1.9e-25 Score=196.63 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=145.3
Q ss_pred EEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC-hH
Q 019818 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG-KG 145 (335)
Q Consensus 69 sViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~G-k~ 145 (335)
|||||+|||+ +.|.++|+++.. |.++++||+||||+|+|+|. +.++++.++++. +++++...++.| |+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~--------q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~-~i~~i~~~~~~G~~~ 71 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAA--------LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGE-RFRFFHVEPLPGAKA 71 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHh--------CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCC-cEEEEEcCCCCCCch
Confidence 6999999998 688899988876 56778999999999999985 677777666542 678888877778 79
Q ss_pred HHHHHHHHhcC--CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 146 EAIRKGMLHSR--GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 146 ~aln~g~~~a~--~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
+|+|.|++.+. +|+|+++|+|+.++|++|.+++..+++ ++. ++|.|........
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~--------------------~~v~~~~~~~~~~--- 127 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDD-PRV--------------------GFVQAPQDYRDGE--- 127 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcC-CCe--------------------eEEecCccccCCC---
Confidence 99999999986 699999999999999999999999853 332 3444422111110
Q ss_pred hhhhhHHHHHHHHHHHHHH--H--hCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee--
Q 019818 224 TRKWYRNFLMKGFHLVVIL--T--AGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV-- 297 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~-- 297 (335)
...+.......+...+.. . .........|++.++||++++++++. ....+.+|.+++.|+.+.|+++.+.|-
T Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf-~~~~~~eD~dl~~r~~~~G~~~~~~~~~~ 205 (236)
T cd06435 128 -ESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGW-DEWCITEDSELGLRMHEAGYIGVYVAQSY 205 (236)
T ss_pred -ccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCC-CCccccchHHHHHHHHHCCcEEEEcchhh
Confidence 011111111111111100 0 01112223455679999999999433 233467899999999999999999983
Q ss_pred EEEecCCCcc-cccchHHHHHHHHHH
Q 019818 298 NWSEIPGSKV-NPLSIPNMLWELALM 322 (335)
Q Consensus 298 ~~~~~~~s~~-~~~~~~~~~~~~~~i 322 (335)
.+...+.+-. ...+..|+..+.++.
T Consensus 206 ~~~~~~~~~~~~~~q~~rw~~g~~~~ 231 (236)
T cd06435 206 GHGLIPDTFEAFKKQRFRWAYGAVQI 231 (236)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhhh
Confidence 3333333322 223444555444443
No 22
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=2.6e-24 Score=206.39 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=139.5
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RN 141 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~ 141 (335)
+.|+++|+||+|||++.|+++|++++.+ ++|+++||+|++|+|+|+|.+.++++++++| +++++..+ ..
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~-------ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p--~v~~vv~~~~gp 134 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLAT-------LDYENYRIFVGTYPNDPATLREVDRLAARYP--RVHLVIVPHDGP 134 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHc-------CCCCCeEEEEEECCCChhHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 3678999999999999999999997653 4678999999999999999999999999999 56644433 23
Q ss_pred CChHHHHHHHHHhc------CC---CEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeee
Q 019818 142 HGKGEAIRKGMLHS------RG---ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFG 212 (335)
Q Consensus 142 ~Gk~~aln~g~~~a------~~---d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g 212 (335)
.||+.|+|.|++.+ +| |+++++|||+.++|+.|..+...+. +. ++|..
T Consensus 135 ~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~---~~--------------------~~VQ~ 191 (504)
T PRK14716 135 TSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP---RH--------------------DFVQL 191 (504)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC---CC--------------------CEEec
Confidence 56999999999764 45 9999999999999999988765542 22 23322
Q ss_pred cchhh--hhHhhhhhhhhHHHHHHH-HHHHHHHHhCCCCccCCCceeeeeHHHHHHhh----h-hhhhccccchHHHHHH
Q 019818 213 SRAHL--EEKALATRKWYRNFLMKG-FHLVVILTAGPGIRDTQCGFKMFTRAAARKLF----T-NIRLKRWCFDVELVYL 284 (335)
Q Consensus 213 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~----~-~~~~~~~~~D~el~~r 284 (335)
..... .........+...+.... .....+...+..+. ..|...+|||++++++. + .+.....+||.|++.|
T Consensus 192 pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~-~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglR 270 (504)
T PRK14716 192 PVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIP-SAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLR 270 (504)
T ss_pred ceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHH
Confidence 11110 111111111111111111 11111222332222 23445699999999982 2 2556778999999999
Q ss_pred hHHcCCCEEEeeeE
Q 019818 285 CKRFGIPIIEISVN 298 (335)
Q Consensus 285 ~~~~G~~i~~~p~~ 298 (335)
+..+|+++.++|..
T Consensus 271 L~~~G~rv~y~p~a 284 (504)
T PRK14716 271 LKRAGFRQIFVRVR 284 (504)
T ss_pred HHHCCCEEEEeccc
Confidence 99999999999843
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.93 E-value=3.2e-25 Score=196.95 Aligned_cols=194 Identities=19% Similarity=0.239 Sum_probs=141.9
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
...|++|||||+|||+..|.++|+++.++ .+++ +||||+||+|+|+|.++++++..+ +++++..++
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q--------~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~ 93 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLAL--------DYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPE 93 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhC--------cCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCC
Confidence 45678999999999999999999999874 3333 899999999999999999988654 588898989
Q ss_pred CCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
|.|++.|+|.|++.+++|+++++|+|+.++++++.++++.+.+ ++. +++.|........
T Consensus 94 ~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~--------------------~~v~~~~~~~~~~ 152 (251)
T cd06439 94 RRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFAD-PSV--------------------GAVSGELVIVDGG 152 (251)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC-CCc--------------------cEEEeEEEecCCc
Confidence 9999999999999999999999999999999999999999953 222 4555544322211
Q ss_pred h-hhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 221 A-LATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
. ......+..+..... .. .... .......|++.+++|++++. .....+.+|.+++.++..+|+++.++|
T Consensus 153 ~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~g~~~~~rr~~~~~----~~~~~~~eD~~l~~~~~~~G~~~~~~~ 222 (251)
T cd06439 153 GSGSGEGLYWKYENWLK-RA-ESRL-GSTVGANGAIYAIRRELFRP----LPADTINDDFVLPLRIARQGYRVVYEP 222 (251)
T ss_pred ccchhHHHHHHHHHHHH-HH-HHhc-CCeeeecchHHHhHHHHhcC----CCcccchhHHHHHHHHHHcCCeEEecc
Confidence 0 001111111111111 11 1111 12333555666899998882 233345679999999999999999998
No 24
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.93 E-value=4e-25 Score=189.64 Aligned_cols=192 Identities=17% Similarity=0.235 Sum_probs=139.8
Q ss_pred ceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 66 ~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
|++|||||+||++ +.+++||+|+++ |++.++||+||||||+|++. ++++.+..+.+ +++++..+++.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~--------q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~--~~~~~~~~~~~g 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRA--------QTYPNWELCIADDASTDPEVKRVLKKYAAQDP--RIKVVFREENGG 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCC--CEEEEEcccCCC
Confidence 4599999999999 999999999988 56678999999999999865 45565556655 788888989999
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
++.|+|.|++.+++|+++++|+|+.++|++|+++++.+.++++. +++.+...........
T Consensus 71 ~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~~ 130 (202)
T cd04184 71 ISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDA--------------------DLIYSDEDKIDEGGKR 130 (202)
T ss_pred HHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCC--------------------CEEEccHHhccCCCCE
Confidence 99999999999999999999999999999999999999665544 3444433221110000
Q ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 224 TRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
....+. ..... ...... ...+++.+++|++++++.+........+|.||+.|+.++|+++.++|
T Consensus 131 ~~~~~~----~~~~~--~~~~~~---~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~ 194 (202)
T cd04184 131 SEPFFK----PDWSP--DLLLSQ---NYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred eccccC----CCCCH--HHhhhc---CCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEcc
Confidence 000000 00000 011111 23455668999999999433222234579999999999999999998
No 25
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.93 E-value=1.2e-24 Score=200.59 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=145.3
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|.||||||+||+++.|++||+|+++ |++.++|||||||||+|+|.++++++.++++ ++++++. +|.|.
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~--------Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~--~i~vi~~-~n~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIA--------QTWTALEIIIVNDGSTDNSVEIAKHYAENYP--HVRLLHQ-ANAGV 73 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHh--------CCCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEC-CCCCh
Confidence 46799999999999999999999988 5777999999999999999999999998888 8998875 59999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
+.|+|.|++.|+||||+++|+|+.+.|++++.+++.++++. . +++.+............
T Consensus 74 ~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~-~--------------------dvv~~~~~~~~~~~~~~ 132 (328)
T PRK10073 74 SVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDD-L--------------------DVAQCNADWCFRDTGET 132 (328)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCC-C--------------------CEEEEccEEEEeCCCcc
Confidence 99999999999999999999999999999999999886542 1 33332211000000000
Q ss_pred hhh-------hHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-
Q 019818 225 RKW-------YRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS- 296 (335)
Q Consensus 225 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p- 296 (335)
... ..... .....+...+........ +.+.+|||+.+++...........+|.++..++...+.++.+++
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~-~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~ 210 (328)
T PRK10073 133 WQSIPSDRLRSTGVL-SGPDWLRMALSSRRWTHV-VWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQ 210 (328)
T ss_pred cccccccccccccee-chHHHHHHHHhhCCCCcc-HhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECC
Confidence 000 00000 001111122222222222 23468999999987323333333469999999999999999997
Q ss_pred --eEEEecCCC
Q 019818 297 --VNWSEIPGS 305 (335)
Q Consensus 297 --~~~~~~~~s 305 (335)
+.|+.+++|
T Consensus 211 ~ly~Yr~~~~S 221 (328)
T PRK10073 211 SLYKYYLHDTS 221 (328)
T ss_pred CEEEEEecCCc
Confidence 344444444
No 26
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.93 E-value=7e-25 Score=185.39 Aligned_cols=185 Identities=32% Similarity=0.560 Sum_probs=153.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.+.+||+++.++.+ +..++||+|+||+|+|+|.+.++++..+.+ .++++..++|.|+++|+|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~------~~~~~eiivvd~~s~d~~~~~~~~~~~~~~--~~~~~~~~~n~G~~~a~n 72 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLE------EGYDYEIIVVDDGSTDGTAEIARELAARVP--RVRVIRLSRNFGKGAAVR 72 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhc------cCCCEEEEEEcCCCCCChHHHHHHHHHhCC--CeEEEEccCCCCccHHHH
Confidence 689999999999999999998643 145799999999999999999999988887 678999999999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.++||+++++|+|+.+.|++|.+++..+.+.+ . ++|+|.+...... ....+.+
T Consensus 73 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~--------------------~~v~g~~~~~~~~--~~~~~~~ 129 (185)
T cd04179 73 AGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGG-A--------------------DVVIGSRFVRGGG--AGMPLLR 129 (185)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccC-C--------------------cEEEEEeecCCCc--ccchHHH
Confidence 999999999999999999999999999999865432 1 6788877644322 2345566
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHh
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLC 285 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~ 285 (335)
.+.............+..+....|++.+++|++++++.......+|.+|.|+++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~~~~~~~~~~ 185 (185)
T cd04179 130 RLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLVGA 185 (185)
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHHhhccccCcceeeEeeecC
Confidence 66666666666766778888889999999999999996455557788888887764
No 27
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.93 E-value=1.8e-24 Score=196.97 Aligned_cols=228 Identities=17% Similarity=0.175 Sum_probs=154.3
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEE-EcCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII-LLGRNH 142 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi-~~~~~~ 142 (335)
..+++|||||+|||++.|.++|+++.+++.. ....|||||||||+|+|.++++++..+.-. ...++ ..+.|.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~------~~~~EIIVVDDgStD~T~~ia~~~~~~v~~-~~~~~~~~~~n~ 101 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME------PLVDELIVIDSGSTDATAERAAAAGARVVS-REEILPELPPRP 101 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc------CCCcEEEEEeCCCccHHHHHHHHhcchhhc-chhhhhccccCC
Confidence 4578999999999999999999999885431 335799999999999999999887543210 11222 236789
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh-H
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE-K 220 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-~ 220 (335)
||+.|+|.|+..++||+|+++|+|+. ++|+++.++++.+..+++. ++|.|....... .
T Consensus 102 Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~--------------------~~V~g~~~r~~~~~ 161 (306)
T PRK13915 102 GKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGV--------------------HLVKAFYRRPLRVS 161 (306)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCc--------------------eEEEEEeccccccc
Confidence 99999999999999999999999996 8999999999999754433 566664221100 0
Q ss_pred -h---hhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHH-cCC-CEEE
Q 019818 221 -A---LATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKR-FGI-PIIE 294 (335)
Q Consensus 221 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~-~G~-~i~~ 294 (335)
. .......+......++.....+ ..+.++.+|++++||++++++. . ..+|+++.++...+.+ .|+ ++.+
T Consensus 162 ~~~~~~~~gr~~~~~~~~l~~~~~~~l--~~i~dp~sG~~a~rr~~l~~l~--~-~~~yg~e~~~l~~~~~~~g~~~i~~ 236 (306)
T PRK13915 162 GGVDATGGGRVTELVARPLLNLLRPEL--AGFVQPLGGEYAGRRELLESLP--F-VPGYGVEIGLLIDTLDRLGLDAIAQ 236 (306)
T ss_pred cccCcCCCCchHHHHHHHHHHHHHHhh--hcccCcchHhHHHHHHHHHhCC--C-CCCCeehHHHHHHHHHHhCcCceEE
Confidence 0 0000011111111122111111 3566888999999999999872 2 2567789999999874 687 8999
Q ss_pred eeeEEEecCCCcccccchHHHHHHHHHHHhh
Q 019818 295 ISVNWSEIPGSKVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 295 ~p~~~~~~~~s~~~~~~~~~~~~~~~~i~~~ 325 (335)
+++..+.... .......+|....+...+.
T Consensus 237 V~l~~r~h~~--~~~~~~~~m~~~i~~~~~~ 265 (306)
T PRK13915 237 VDLGVRAHRN--QPLRALGRMARQIIATALS 265 (306)
T ss_pred EEecccccCC--CCHHHHHHHHHHHHHHHHH
Confidence 9876554432 2344555555555544433
No 28
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.93 E-value=5e-24 Score=179.99 Aligned_cols=175 Identities=23% Similarity=0.429 Sum_probs=144.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|.++++++..+..+ +..++||+||||||+|+|.++++++.++++ +++++...+|.|++.|+|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~-----~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~i~~i~~~~n~G~~~a~n 73 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLES-----LGYDYEIIFVDDGSTDRTLEILRELAARDP--RVKVIRLSRNFGQQAALL 73 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHh-----cCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEecCCCCcHHHHH
Confidence 6999999999999999999887663 567899999999999999999999988887 899999989999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.+.+|+++++|+|+.+++++|.++++.++++. ++|.|.+.... .....
T Consensus 74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~----------------------~~v~g~~~~~~------~~~~~ 125 (181)
T cd04187 74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEEGY----------------------DVVYGVRKNRK------ESWLK 125 (181)
T ss_pred HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCC----------------------cEEEEEecCCc------chHHH
Confidence 999999999999999999999999999999864322 67888775432 24455
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchH
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDV 279 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~ 279 (335)
.+....+...........+.+..|++.+|+|++++++.+..+...|..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~ 175 (181)
T cd04187 126 RLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLLPERHRFLRGL 175 (181)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhcCCCCccHHHH
Confidence 55555555556666778888999999999999999995444444444333
No 29
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.92 E-value=2.6e-26 Score=201.02 Aligned_cols=208 Identities=24% Similarity=0.255 Sum_probs=125.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G-- 143 (335)
|+|+||||+|||++.+.++|++++.+ +++++||+|+||+|+|++.+.++++.+.+|..+++++..+.+.|
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~--------~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~ 72 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQ--------DYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPG 72 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTS--------HHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcC--------CCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcc
Confidence 45999999999999999999999874 34579999999999999999999999998855678888876555
Q ss_pred -hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 144 -k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|+.++|.|++.+++|+|+++|+|+.++|++|.++++.+ ..++. .+|.|..........
T Consensus 73 ~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~--------------------~~v~~~~~~~~~~~~ 131 (228)
T PF13641_consen 73 GKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF-ADPGV--------------------GAVGGPVFPDNDRNW 131 (228)
T ss_dssp HHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS----------------------EEEEEEEETTCCCE
T ss_pred hHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCC--------------------CeEeeeEeecCCCCH
Confidence 89999999999999999999999999999999999999 44443 344443322111100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee--eEEE
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS--VNWS 300 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p--~~~~ 300 (335)
.............................|++.+|||++++++++... ....+|.+++.|+.++|+++.+.| ..++
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~-~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~ 209 (228)
T PF13641_consen 132 -LTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP-FILGEDFDLCLRLRAAGWRIVYAPDALVYH 209 (228)
T ss_dssp -EEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S-SSSSHHHHHHHHHHHTT--EEEEEEEEEEE
T ss_pred -HHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC-CCcccHHHHHHHHHHCCCcEEEECCcEEEE
Confidence 000000000000000000001111222345678999999999943222 455689999999999999999998 3444
Q ss_pred ecCC
Q 019818 301 EIPG 304 (335)
Q Consensus 301 ~~~~ 304 (335)
+.+.
T Consensus 210 ~~~~ 213 (228)
T PF13641_consen 210 EEPS 213 (228)
T ss_dssp --SS
T ss_pred eCCC
Confidence 4343
No 30
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.92 E-value=2.1e-24 Score=190.92 Aligned_cols=228 Identities=19% Similarity=0.135 Sum_probs=155.0
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
+|||||+||+++.+.++|+++.++.+ +..++|||||||+|+|+|.+.++++.++.+ .++++..+ +.|++.|
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~------~~~~~evivvd~~s~d~~~~~~~~~~~~~~--~v~~i~~~-~~~~~~a 72 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSY------PKDLIEIIVVDGGSTDGTREIVQEYAAKDP--RIRLIDNP-KRIQSAG 72 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccC------CCCccEEEEEeCCCCccHHHHHHHHHhcCC--eEEEEeCC-CCCchHH
Confidence 89999999999999999999987321 226899999999999999999999988766 78888765 5789999
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhh
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKW 227 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 227 (335)
+|.|++.+++|+++++|+|+.++|++|+++++.+.+.+ . +++.|........... ..
T Consensus 73 ~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~-~--------------------~~v~~~~~~~~~~~~~--~~ 129 (249)
T cd02525 73 LNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTG-A--------------------DNVGGPMETIGESKFQ--KA 129 (249)
T ss_pred HHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCC-C--------------------CEEecceecCCCChHH--HH
Confidence 99999999999999999999999999999999876532 1 4555544322111000 00
Q ss_pred hHHHHHHHHHH---HHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-eEEEecC
Q 019818 228 YRNFLMKGFHL---VVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS-VNWSEIP 303 (335)
Q Consensus 228 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p-~~~~~~~ 303 (335)
........+.. ..............+++.+++|++++++..........+|.+++.|+.++|+++.++| +...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 130 IAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYP 209 (249)
T ss_pred HHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcC
Confidence 00000000000 0000000001234556679999999998433222334579999999999999999998 3333332
Q ss_pred -CC-cccccchHHHHHHHHHHHhhhh
Q 019818 304 -GS-KVNPLSIPNMLWELALMSVGYR 327 (335)
Q Consensus 304 -~s-~~~~~~~~~~~~~~~~i~~~y~ 327 (335)
.| +.-+++..++..+..+....+.
T Consensus 210 ~~s~~~~~~~~~r~~~~~~~~~~~~~ 235 (249)
T cd02525 210 RSTLKKLARQYFRYGKWRARTLRKHR 235 (249)
T ss_pred CCCHHHHHHHHHHHhhhhHHHHHhCc
Confidence 22 2234566666666665555544
No 31
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.92 E-value=6.4e-24 Score=184.95 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=138.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc----CCCCCh
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL----GRNHGK 144 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~----~~~~Gk 144 (335)
||||+||+++.|++||+|+++ |.++ ++|||||||||+|+|.++++++.++++..+++++.. +.+.|.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~--------q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 72 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQ--------QDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGV 72 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccH
Confidence 699999999999999999987 3444 699999999999999999999988766446776653 346899
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhh-hhHhhh
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL-EEKALA 223 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~-~~~~~~ 223 (335)
+.|+|.|++.++||+++++|+|+.++|+++.+++..+.+++. .++|.+... ..+..
T Consensus 73 ~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~----------------------~~v~~~~~~~~~~~~- 129 (219)
T cd06913 73 GYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN----------------------SIIGCQVRRIPEDST- 129 (219)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCC----------------------cEEEEEEEecCcccc-
Confidence 999999999999999999999999999999999988866542 233333211 11000
Q ss_pred hhhhhHHHHHHH-HHHHHH-HHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccccchHHHHHHhHHcCCCEEEee---e
Q 019818 224 TRKWYRNFLMKG-FHLVVI-LTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRWCFDVELVYLCKRFGIPIIEIS---V 297 (335)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~~~D~el~~r~~~~G~~i~~~p---~ 297 (335)
..+..+.... ...+.. ...... ........++||++++++++..+ ...+.+|.+|+.|+.++|.++.++| +
T Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 206 (219)
T cd06913 130 --ERYTRWINTLTREQLLTQVYTSHG-PTVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLL 206 (219)
T ss_pred --hhhHHHHHhcCHHHHHHHHHhhcC-CccccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceee
Confidence 1111111110 000111 111111 11112224799999999954322 2345689999999999999999997 3
Q ss_pred EEEecCCC
Q 019818 298 NWSEIPGS 305 (335)
Q Consensus 298 ~~~~~~~s 305 (335)
.|+.+++|
T Consensus 207 ~yr~~~~s 214 (219)
T cd06913 207 LYRYHPGA 214 (219)
T ss_pred eeeecCCC
Confidence 44444443
No 32
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.92 E-value=1.1e-24 Score=186.75 Aligned_cols=191 Identities=18% Similarity=0.205 Sum_probs=137.4
Q ss_pred EEEEeccCCCC--ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 69 SLIIPAFNEEH--RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 69 sViip~~ne~~--~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
||+||+||++. .|++||+|+++ |.+.+.||||||||| +|+|.++++++.++++ ++++..++|.|++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~--------q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~ 69 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILK--------QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLG 69 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHh--------cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHH
Confidence 69999999984 89999999988 466689999999998 7889999988877664 8889988999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.|+|.|++.++||+++++|+|+.++|++|+.+++.++++++.. ++.|.............
T Consensus 70 ~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 129 (201)
T cd04195 70 KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEID--------------------IVGGGVLEFDSDGNDIG 129 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeE--------------------EEcccEEEECCCCCeec
Confidence 9999999999999999999999999999999999998765543 33332211110000000
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
... ............. . .....++..++||++++++.+... ..+.+|.++..|+..+|+++.++|
T Consensus 130 ~~~---~~~~~~~~~~~~~-~-~~~~~~~~~~~rr~~~~~~g~~~~-~~~~eD~~~~~r~~~~g~~~~~~~ 194 (201)
T cd04195 130 KRR---LPTSHDDILKFAR-R-RSPFNHPTVMFRKSKVLAVGGYQD-LPLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred ccc---CCCCHHHHHHHhc-c-CCCCCChHHhhhHHHHHHcCCcCC-CCCchHHHHHHHHHHcCCceeccc
Confidence 000 0000000001111 1 111233456899999999844333 367789999999999999999987
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.92 E-value=2.9e-24 Score=188.80 Aligned_cols=199 Identities=15% Similarity=0.196 Sum_probs=135.8
Q ss_pred EEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 68 ISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 68 vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
||||||+|||+ +.+.+||+++.+ |. ++||+||||+|+|+|.+.+++.. +.+ .+.++. .++.||+.
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~--------q~--~~eiivvdd~s~d~~~~~l~~~~-~~~--~~~v~~-~~~~g~~~ 67 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILR--------QK--PLEIIVVTDGDDEPYLSILSQTV-KYG--GIFVIT-VPHPGKRR 67 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHh--------CC--CCEEEEEeCCCChHHHHHHHhhc-cCC--cEEEEe-cCCCChHH
Confidence 89999999999 999999999988 34 68999999999999998875432 333 455554 56899999
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhh
Q 019818 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRK 226 (335)
Q Consensus 147 aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 226 (335)
|+|.|++.+++|+|+++|+|+.+++++|+++++.+. +++. ++|.|..............
T Consensus 68 a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v--------------------~~v~~~~~~~~~~~~~~~~ 126 (235)
T cd06434 68 ALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKV--------------------GGVGTNQRILRPRDSKWSF 126 (235)
T ss_pred HHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc-CCCE--------------------eEEcCceEeecCcccHHHH
Confidence 999999999999999999999999999999999997 4443 3443332211110000000
Q ss_pred hhHHHHHHHHHHH-HHHHhCCCCccCCCceeeeeHHHHHHhhhhhh---------hccccchHHHHHHhHHcCCCEEEee
Q 019818 227 WYRNFLMKGFHLV-VILTAGPGIRDTQCGFKMFTRAAARKLFTNIR---------LKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~---------~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
............. .............|.+.++||++++++..... ....++|.+++.++.++|+++.+.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~ 206 (235)
T cd06434 127 LAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQY 206 (235)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEec
Confidence 0011111110000 01111112233445567899999998732221 1346679999999999999999997
Q ss_pred --eEEEe
Q 019818 297 --VNWSE 301 (335)
Q Consensus 297 --~~~~~ 301 (335)
..+.+
T Consensus 207 ~~~~~~~ 213 (235)
T cd06434 207 TSEAYTE 213 (235)
T ss_pred CCeEEEE
Confidence 34444
No 34
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.92 E-value=9.5e-24 Score=184.33 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=134.3
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCChH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKG 145 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~~Gk~ 145 (335)
||||+||+++.|++||++++. |.+++ +||+||||+|+|+|.+.++ .....+..+++++..+ .+.|++
T Consensus 1 viip~~n~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~ 71 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSA--------LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKK 71 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHh--------CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhH
Confidence 699999999999999999987 45555 9999999999999999887 4444443378888776 478999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.++|.|++.+++|+|+++|+|+.++|++|+++++.+.+... .++.|...........
T Consensus 72 ~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~---------------------~~v~~~~~~~~~~~~~-- 128 (229)
T cd04192 72 NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI---------------------GLVAGPVIYFKGKSLL-- 128 (229)
T ss_pred HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCC---------------------cEEeeeeeecCCccHH--
Confidence 99999999999999999999999999999999998865432 3444433221111000
Q ss_pred hhhHHHHHHHHH--HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh-hhccccchHHHHHHhHHcCC-CEEEee
Q 019818 226 KWYRNFLMKGFH--LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI-RLKRWCFDVELVYLCKRFGI-PIIEIS 296 (335)
Q Consensus 226 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~-~~~~~~~D~el~~r~~~~G~-~i~~~p 296 (335)
.....+...... .......+... ...+++.+++|++++++.+.. ......+|.+++.++..+|+ ++.+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~ 202 (229)
T cd04192 129 AKFQRLDWLSLLGLIAGSFGLGKPF-MCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLK 202 (229)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcCcc-ccccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEee
Confidence 001111000000 00111111221 223445689999999994432 22344579999999999999 888874
No 35
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.91 E-value=2.7e-23 Score=184.31 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=132.3
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|.||||||+||+++.|+++|+|+.++.. |++.++|||||||||+|+|.++++++.... +++++..+ +.|.+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~-----~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~~-~~G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQ-----DPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSEP-DNGIY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHh-----CCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEECC-CCCHH
Confidence 4699999999999999999999986543 356789999999999999999998875432 47888764 67999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.|+|.|++.|+||+|+++|+|+...|+.++. +..+...+.. ++++|......++..
T Consensus 72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~-~~~~~~~~~~--------------------~~v~g~~~~~~~~~~--- 127 (248)
T PRK10063 72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANF-VRQLKMQKDN--------------------AMIIGDALLDFGDGH--- 127 (248)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccCcCHHHH-HHHHHhCCCC--------------------eEEEeeeEEEcCCCc---
Confidence 9999999999999999999999999987654 4444332222 455565532111100
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEE
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~ 300 (335)
...+.... .... .... . ......+++++.++.. +......+++|.|+..|+..+|+++.++|....
T Consensus 128 ~~~~~~~~---~~~~--~~~~--~-~~~~~~~~~~~~~~~~-~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~ 193 (248)
T PRK10063 128 KIKRSAKP---GWYI--YHSL--P-ASHQAIFFPVSGLKKW-RYDLQYKVSSDYALAARLYKAGYAFKKLNGLVS 193 (248)
T ss_pred EEEEccCC---hhHH--hcCC--C-CCCcEEEEEHHHHhcC-CCCcccchHHhHHHHHHHHHcCCcEEEcCceeE
Confidence 00000000 0000 0011 1 1222346899988754 222234566799999999999999999984333
No 36
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.91 E-value=7.4e-24 Score=183.06 Aligned_cols=195 Identities=17% Similarity=0.178 Sum_probs=137.6
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
||+||+||+++.|+++|+|+++ |+++++|||||||||+|+|.++++++..++| ..+.++..++|.|++.++
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~--------q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~ 71 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILA--------QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNF 71 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHH
Confidence 6899999999999999999988 4566899999999999999999999988876 257788888899999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH-hhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK-ALATRKW 227 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~ 227 (335)
|.|+..++||+|+++|+|+.++|++|.++++.+...+.. .++.|........ .......
T Consensus 72 n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 131 (214)
T cd04196 72 ESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKP--------------------LLVYSDLELVDENGNPIGESF 131 (214)
T ss_pred HHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCc--------------------eEEecCcEEECCCCCCccccc
Confidence 999999999999999999999999999999997665443 3333322111100 0000000
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 228 YRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
................... ...+++.+|+|++++++.+......+.+|.++..++.. |.++.++|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~ 196 (214)
T cd04196 132 FEYQKIKPGTSFNNLLFQN---VVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLD 196 (214)
T ss_pred ccccccCCccCHHHHHHhC---ccCCceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcc
Confidence 0000000000011111111 12344568999999999544443256679888888877 55888887
No 37
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.91 E-value=7e-24 Score=181.04 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=135.0
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
|||||+||+++.|.++|+++.+ |..+++||+||||+|+|+|.++++++..+ +.++...++.|++.|+
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~--------q~~~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~ 67 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLS--------QTYPNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAM 67 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHh--------CCCCCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHH
Confidence 6899999999999999999987 46667999999999999999999887553 3344556789999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
|.|++.+++|+|+++|+|+.+.++++.+++..+...++. +++.|..............
T Consensus 68 n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~--------------------~~v~g~~~~~~~~~~~~~~-- 125 (202)
T cd06433 68 NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEV--------------------DVVYGDVLLVDENGRVIGR-- 125 (202)
T ss_pred HHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCc--------------------cEEEeeeEEEcCCCCcccC--
Confidence 999999999999999999999999999999777665443 5666654322111100000
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee
Q 019818 229 RNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV 297 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~ 297 (335)
.. .......... ....... +..+++|++++++........+++|.|++.|+.+.|+++.++|.
T Consensus 126 ~~----~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~ 188 (202)
T cd06433 126 RR----PPPFLDKFLL-YGMPICH-QATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPE 188 (202)
T ss_pred CC----CcchhhhHHh-hcCcccC-cceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecch
Confidence 00 0000111111 1111222 33479999999994322223456799999999999999998883
No 38
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=5e-23 Score=176.87 Aligned_cols=162 Identities=18% Similarity=0.205 Sum_probs=131.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|+++|+|+.+ |++++.||||+||||+|+|.++++++....+ ++++..++|.|.+.++|
T Consensus 1 viI~~~n~~~~l~~~l~sl~~--------q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n 69 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLA--------QTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFY 69 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHh--------ccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHH
Confidence 699999999999999999988 4666789999999999999999998866543 88899999999999999
Q ss_pred HHHHhc---CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhh
Q 019818 150 KGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRK 226 (335)
Q Consensus 150 ~g~~~a---~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 226 (335)
.|++.+ .+|+++++|+|+.++++++.++++.++ .+.. +++.|.+.....
T Consensus 70 ~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~--------------------~~~~~~~~~~~~------- 121 (202)
T cd04185 70 EGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNP--------------------QFLAPLVLDPDG------- 121 (202)
T ss_pred HHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCc--------------------eEecceeEcCCC-------
Confidence 999876 689999999999999999999999997 2222 455554432110
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhh-hhhccccchHHHHHHhHHcCCCEEEee
Q 019818 227 WYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
..++ .+++|++++++... .....+++|.+++.|+..+|+++ +.|
T Consensus 122 ------------------------~~~~-~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~ 166 (202)
T cd04185 122 ------------------------SFVG-VLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVP 166 (202)
T ss_pred ------------------------ceEE-EEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-Eec
Confidence 2233 48999999998332 22335668999999999999999 887
No 39
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.90 E-value=4.9e-22 Score=176.37 Aligned_cols=224 Identities=14% Similarity=0.086 Sum_probs=148.1
Q ss_pred EEEEEeccCCCCC-hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHH----HHHHHHHHcC-CCcEEEEEcCCC
Q 019818 68 ISLIIPAFNEEHR-LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR----VAFDFVRKYT-VDNVRIILLGRN 141 (335)
Q Consensus 68 vsViip~~ne~~~-l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~----~~~~~~~~~~-~~~i~vi~~~~~ 141 (335)
|||+||+|||+.. +.++|++..+.+..+ .+++++||+++||++++.... .+.+++++++ ..++++++.++|
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~---~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~ 77 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKT---GLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRREN 77 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhc---CCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 6999999999987 788888887766541 234789999999987665432 2233555554 237899999988
Q ss_pred CC-hHHHHHHHHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhh
Q 019818 142 HG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 142 ~G-k~~aln~g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
.| |++++|.++.. +++|+|+++|||..++|++|.+++..|.++++. .+|++.....+
T Consensus 78 ~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~v--------------------g~vq~~~~~~n 137 (254)
T cd04191 78 TGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRA--------------------GIIQTAPKLIG 137 (254)
T ss_pred CCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCE--------------------EEEeCCceeEC
Confidence 88 78899999987 688999999999999999999999999876554 45554332222
Q ss_pred hHhhhhhhhhHHHHHHH---HHHHH---HHHhCCCCccCCCceeeeeHHHHHHhh--------hhhhhccccchHHHHHH
Q 019818 219 EKALATRKWYRNFLMKG---FHLVV---ILTAGPGIRDTQCGFKMFTRAAARKLF--------TNIRLKRWCFDVELVYL 284 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~g~~~~~r~~l~~i~--------~~~~~~~~~~D~el~~r 284 (335)
. .+++.+..... +.... ............|...++||++|+++. +.+......+|.++.++
T Consensus 138 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~ 212 (254)
T cd04191 138 A-----ETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAAL 212 (254)
T ss_pred C-----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHH
Confidence 1 12222222211 11111 111111122233456799999998851 12223457789999999
Q ss_pred hHHcCCCEEEeeeE---EEecCCC-cccccchHHHHHHH
Q 019818 285 CKRFGIPIIEISVN---WSEIPGS-KVNPLSIPNMLWEL 319 (335)
Q Consensus 285 ~~~~G~~i~~~p~~---~~~~~~s-~~~~~~~~~~~~~~ 319 (335)
+..+|+++++.|.. +.+.+.+ +.-+++..||..+.
T Consensus 213 ~~~~G~ri~~~~~~~~~~~~~p~~~~~~~~qr~RW~~G~ 251 (254)
T cd04191 213 MRRAGWEVRLAPDLEGSYEECPPTLIDFLKRDRRWCQGN 251 (254)
T ss_pred HHHcCCEEEEccCCcceEeECCCCHHHHHHHHHHHHhhc
Confidence 99999999999942 3443444 33345555665544
No 40
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.90 E-value=2.1e-21 Score=192.64 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=154.8
Q ss_pred CCCCceEEEEEeccCCCC-----ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHH----HHHHHHHcC-CC
Q 019818 62 DPAEKYISLIIPAFNEEH-----RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV----AFDFVRKYT-VD 131 (335)
Q Consensus 62 ~~~~~~vsViip~~ne~~-----~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~----~~~~~~~~~-~~ 131 (335)
.+..++|+|+||+|||+. .++.+++|+.++ ....++|++++||+++|++... .++++++++ ..
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~-------~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAAT-------GHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc-------CCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCC
Confidence 345678999999999985 355555555542 2345799999999999987643 345666664 23
Q ss_pred cEEEEEcCCCCC-hHHHHHHHHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCe
Q 019818 132 NVRIILLGRNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPI 208 (335)
Q Consensus 132 ~i~vi~~~~~~G-k~~aln~g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (335)
++.+.++..|.| |++++|.+++. +++||++++|||+.+++|++.+++..|+++++. .
T Consensus 193 ~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~v--------------------G 252 (691)
T PRK05454 193 RIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRA--------------------G 252 (691)
T ss_pred cEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCE--------------------E
Confidence 788888887877 88999999998 566999999999999999999999999876654 4
Q ss_pred eeeecchhhhhHhhhhhhhhHHH---HHHHHHHHHHHHh---CCCCccCCCceeeeeHHHHHHhhh--------hhhhcc
Q 019818 209 AAFGSRAHLEEKALATRKWYRNF---LMKGFHLVVILTA---GPGIRDTQCGFKMFTRAAARKLFT--------NIRLKR 274 (335)
Q Consensus 209 ~v~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~g~~~~~r~~l~~i~~--------~~~~~~ 274 (335)
+|++.....+. .+++.+. .+..+........ ...-....|...++|++++.++.+ .+....
T Consensus 253 lVQt~~~~~n~-----~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~ 327 (691)
T PRK05454 253 LIQTLPVAVGA-----DTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHI 327 (691)
T ss_pred EEeCCccCcCC-----CCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCc
Confidence 55543322221 1222222 2222222211100 001112334457899999988721 122345
Q ss_pred ccchHHHHHHhHHcCCCEEEeee---EEEecCCC-cccccchHHHHHHHHHHHh
Q 019818 275 WCFDVELVYLCKRFGIPIIEISV---NWSEIPGS-KVNPLSIPNMLWELALMSV 324 (335)
Q Consensus 275 ~~~D~el~~r~~~~G~~i~~~p~---~~~~~~~s-~~~~~~~~~~~~~~~~i~~ 324 (335)
.++|.+...+++++||++.++|- .|.+.+.+ +.-.+|..|+..++++...
T Consensus 328 LseD~~~a~~l~~~GyrV~~~pd~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~ 381 (691)
T PRK05454 328 LSHDFVEAALMRRAGWGVWLAPDLPGSYEELPPNLLDELKRDRRWCQGNLQHLR 381 (691)
T ss_pred ccHHHHHHHHHHHCCCEEEEcCccccccccCCCCHHHHHHHHHHHHhchHHHHH
Confidence 67899999999999999999984 45555555 3344666777777776554
No 41
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.90 E-value=1.9e-21 Score=193.88 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=141.2
Q ss_pred CCCCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 019818 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 61 ~~~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
.....|.|||+||+|||+.++++++++++.. ++|+++||++++|+++|.|.+.++++++++| +++++..+.
T Consensus 58 ~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~-------ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p--~~~~v~~~~ 128 (727)
T PRK11234 58 YKPDEKPLAIMVPAWNETGVIGNMAELAATT-------LDYENYHIFVGTYPNDPATQADVDAVCARFP--NVHKVVCAR 128 (727)
T ss_pred ccCCCCCEEEEEecCcchhhHHHHHHHHHHh-------CCCCCeEEEEEecCCChhHHHHHHHHHHHCC--CcEEEEeCC
Confidence 3345578999999999999999999998752 5777899999999999999999999999998 566554443
Q ss_pred --CCChHHHHHHHHHhc---------CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCee
Q 019818 141 --NHGKGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIA 209 (335)
Q Consensus 141 --~~Gk~~aln~g~~~a---------~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (335)
|.||+.|+|.|+..+ +.+.+++.|||+.++|+.|. +++.+.+.. ++
T Consensus 129 ~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~----------------------~~ 185 (727)
T PRK11234 129 PGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK----------------------DL 185 (727)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC----------------------Ce
Confidence 789999999999987 23678889999999999997 566664321 34
Q ss_pred eeecchhhhh--HhhhhhhhhHHHHHHHHH-HHHHHHhCCCCccCCCceeee-eH--HHHHHhhh--hhhhccccchHHH
Q 019818 210 AFGSRAHLEE--KALATRKWYRNFLMKGFH-LVVILTAGPGIRDTQCGFKMF-TR--AAARKLFT--NIRLKRWCFDVEL 281 (335)
Q Consensus 210 v~g~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~r--~~l~~i~~--~~~~~~~~~D~el 281 (335)
|++....... .......+.-.+..+... ...+...+..+. ..|...+| || +++.++++ .+..+..+||+++
T Consensus 186 VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~-l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dl 264 (727)
T PRK11234 186 IQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVP-SAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDI 264 (727)
T ss_pred EeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcc-cCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHH
Confidence 5553321111 111111111222221111 122333333332 33334578 56 45667642 4677888999999
Q ss_pred HHHhHHcCCCEEEee
Q 019818 282 VYLCKRFGIPIIEIS 296 (335)
Q Consensus 282 ~~r~~~~G~~i~~~p 296 (335)
+.++..+|+++.+.|
T Consensus 265 g~rL~~~G~~v~f~~ 279 (727)
T PRK11234 265 GFRLKEKGMREIFVR 279 (727)
T ss_pred HHHHHHCCCEEEEcc
Confidence 999999999999998
No 42
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.90 E-value=4.9e-22 Score=178.62 Aligned_cols=111 Identities=18% Similarity=0.267 Sum_probs=98.4
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|.||||||+||+++.+.++|+|+++ |.+.++|||||||||+| .+.++++.+.+...+++++..+.|.|.
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~--------Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~ 73 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLR--------QDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGA 73 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 47899999999999999999999998 57778999999999984 556677766544448999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhc
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~ 185 (335)
+.|+|.|++.|+||||+++|+|+.+.|+.|..+++.+.+..
T Consensus 74 ~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~ 114 (279)
T PRK10018 74 CAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLV 114 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999887643
No 43
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.89 E-value=1.2e-22 Score=172.06 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=117.8
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+|||++.|.++|+++.++.+ +...+||+||||+|+|+|.++++++.. .+.+...+.+.||+.|+|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~------p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~aln 69 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDY------PRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYALD 69 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCC------CCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHHHH
Confidence 699999999999999999987422 235799999999999999998876522 333344456889999999
Q ss_pred HHHHhcC-----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 150 KGMLHSR-----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 150 ~g~~~a~-----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
.|++.+. +|+++++|+|+.++|+++.+++..+.++. ++|.|.+.....+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~----------------------~~v~g~~~~~~~~---- 123 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGA----------------------RVVQAYYNSKNPD---- 123 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCC----------------------CeeEEEEeeeCCc----
Confidence 9999874 89999999999999999999999997543 5666655422111
Q ss_pred hhhhHHHH---HHHHHHHH---HHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHH
Q 019818 225 RKWYRNFL---MKGFHLVV---ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEL 281 (335)
Q Consensus 225 ~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el 281 (335)
.++..... ....+.+. ....+...... |++.+|||+++++. ++......+|.||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~rr~~l~~~--g~~~~~l~ED~~~ 183 (183)
T cd06438 124 DSWITRLYAFAFLVFNRLRPLGRSNLGLSCQLG-GTGMCFPWAVLRQA--PWAAHSLTEDLEF 183 (183)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeec-CchhhhHHHHHHhC--CCCCCCcccccCC
Confidence 11221111 11112211 11223222333 33458999999993 4445566778764
No 44
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.88 E-value=6.5e-22 Score=166.86 Aligned_cols=170 Identities=23% Similarity=0.282 Sum_probs=127.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.++++|+++.+ |++.++||+|+||+|+|+|.++++++.+..+...+.+...+.+.|++.++|
T Consensus 1 ivip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLN--------QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRN 72 (182)
T ss_pred CEEeecCChHHHHHHHHHHHh--------ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHH
Confidence 689999999999999999988 456689999999999999999999887754432344455445567999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.++||+++++|+|+.+++++|.++++.+.. + ..+.|.+.........
T Consensus 73 ~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~----~-------------------~~v~g~~~~~~~~~~~------ 123 (182)
T cd06420 73 KAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP----G-------------------VFLSGSRVLLNEKLTE------ 123 (182)
T ss_pred HHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC----C-------------------cEEecceeecccccce------
Confidence 9999999999999999999999999999988721 1 3555655432211000
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-ccc-cchHHHHHHhHHcCCCEEEe
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-KRW-CFDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~-~~D~el~~r~~~~G~~i~~~ 295 (335)
....+++.+++|+.+.++.+.... ..+ .+|.|++.|+.++|++...+
T Consensus 124 -------------------~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~ 172 (182)
T cd06420 124 -------------------RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKL 172 (182)
T ss_pred -------------------eEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEe
Confidence 123344457788888877333221 222 47999999999999777666
No 45
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.88 E-value=8.8e-23 Score=168.61 Aligned_cols=167 Identities=23% Similarity=0.322 Sum_probs=122.1
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
|||||+||+++.|.++|+|++++ +..++||+||||||+|+|.++++++.+..+ +++++..++|.|++.++
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q--------~~~~~eiivvdd~s~d~~~~~~~~~~~~~~--~i~~i~~~~n~g~~~~~ 70 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQ--------TDPDFEIIVVDDGSTDETEEILEEYAESDP--NIRYIRNPENLGFSAAR 70 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHH--------SGCEEEEEEEECS-SSSHHHHHHHHHCCST--TEEEEEHCCCSHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhc--------cCCCEEEEEecccccccccccccccccccc--ccccccccccccccccc
Confidence 79999999999999999999994 566899999999999999999999977333 89999999999999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
|.|++.++++|++++|+|+.+++++|..+++.+.+.+. +++.|................
T Consensus 71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 129 (169)
T PF00535_consen 71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPP---------------------DVVIGSVIYIDDDNRYPDRRL 129 (169)
T ss_dssp HHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTT---------------------EEEEEEEEEEECTTETEECCC
T ss_pred cccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCC---------------------cEEEEEEEEecCCcccccccc
Confidence 99999999999999999999999999999999988543 455555543221111111100
Q ss_pred H-HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHh
Q 019818 229 R-NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKL 266 (335)
Q Consensus 229 ~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i 266 (335)
. .......................+++.+++|++++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 130 RFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp TSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred chhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 0 0111112222333334555566677789999999987
No 46
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=1.3e-21 Score=161.84 Aligned_cols=157 Identities=22% Similarity=0.333 Sum_probs=131.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
|+||+||+.+.+.++++++.+ |.+.++||+|+||||+|++.+.+++... +++++..+++.|++.|+|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~--------~~~~~~~iiivdd~s~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLA--------QTYPDFEVIVVDNASTDGSVELLRELFP-----EVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHh--------ccCCCeEEEEEECCCCchHHHHHHHhCC-----CeEEEecCCCcChHHHhh
Confidence 689999999999999999987 3557899999999999999988876532 588888889999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.+++++++++|+|+.++++++..+++.+.+.++. .++ +.+
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~--------------------~~~-~~~--------------- 111 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDV--------------------GIV-GPK--------------- 111 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCc--------------------eEE-Ecc---------------
Confidence 99999999999999999999999999999988776432 233 332
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhh-hhhccccchHHHHHHhHHcCCCEEEee
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
..+++.++++++++++.+. .....+.+|.++..|+.++|+++.+.|
T Consensus 112 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 112 ---------------------VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred ---------------------CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEcc
Confidence 4566779999999998322 222235679999999999999999998
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=1.6e-21 Score=169.66 Aligned_cols=178 Identities=25% Similarity=0.265 Sum_probs=124.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
||||||+||+++.|.++|+++.+ |.+.++||+||||+|+|+|.+++++ + ++.++. .+.|++.+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~--------q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~~--~~~g~~~a 63 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRR--------LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVIS--SPKGRARQ 63 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHh--------ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEEe--CCcCHHHH
Confidence 58999999999999999999987 4557899999999999999988876 2 566655 45799999
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhh
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKW 227 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 227 (335)
+|.|+..+++++++++|+|+.++++++++++..+..... .++.+........ ..
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~---------------------~~~~~~~~~~~~~-----~~ 117 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGA---------------------VAGAFRLRFDDPG-----PR 117 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCc---------------------EEEEEEeeecCCc-----cc
Confidence 999999999999999999999999999999776644321 1111111111110 11
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEE
Q 019818 228 YRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
.+... ...... ....... ..+.+.+++|++++++++..... +.+|.||+.|+.+.|+++..
T Consensus 118 ~~~~~---~~~~~~-~~~~~~~-~~~~~~~~r~~~~~~~G~fd~~~-~~ED~d~~~r~~~~G~~~~~ 178 (221)
T cd02522 118 LRLLE---LGANLR-SRLFGLP-YGDQGLFIRRELFEELGGFPELP-LMEDVELVRRLRRRGRPALL 178 (221)
T ss_pred hhhhh---hcccce-ecccCCC-cCCceEEEEHHHHHHhCCCCccc-cccHHHHHHHHHhCCCEEEc
Confidence 11000 000000 0011111 12234689999999995443333 77899999999999988865
No 48
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.88 E-value=1.4e-22 Score=179.67 Aligned_cols=201 Identities=16% Similarity=0.102 Sum_probs=132.2
Q ss_pred EEEeccCCC-CChHHHHHHHHHHHHHhh--hcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 70 LIIPAFNEE-HRLPGALDETLNYLQQRA--AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 70 Viip~~ne~-~~l~~~l~sl~~~~~~~~--~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
||||+|||+ ..|+++|+|++++.++++ .+....++||+||+|||+| .|.||..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~ 56 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD 56 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence 699999997 799999999999654200 0000348999999999999 2456654
Q ss_pred -------HHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh
Q 019818 147 -------AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219 (335)
Q Consensus 147 -------aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 219 (335)
++|.++..+++|+|+++|+|+.++|++|.++++.|.++++. ..|.|.......
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~v--------------------g~v~g~~~~~~~ 116 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEI--------------------GGVCGEIHPMGK 116 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCE--------------------EEEEeeeEEcCC
Confidence 56778888899999999999999999999999999766543 344443322111
Q ss_pred HhhhhhhhhHHHHH------HHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-------------------cc
Q 019818 220 KALATRKWYRNFLM------KGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-------------------KR 274 (335)
Q Consensus 220 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-------------------~~ 274 (335)
. .++...+.. ...........+. .....|.+.+||+++++++.+.... ..
T Consensus 117 ~----~~~~~~~q~~ey~~~~~~~~~~~s~~g~-~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (244)
T cd04190 117 K----QGPLVMYQVFEYAISHWLDKAFESVFGF-VTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLD 191 (244)
T ss_pred c----chhHHHhHheehhhhhhhcccHHHcCCc-eEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHh
Confidence 0 011111111 0111111122222 2334556779999999988433211 23
Q ss_pred ccchHHHHHHhHHcCCCEEE--ee--eEEEecCCC-cccccchHHHHHHH
Q 019818 275 WCFDVELVYLCKRFGIPIIE--IS--VNWSEIPGS-KVNPLSIPNMLWEL 319 (335)
Q Consensus 275 ~~~D~el~~r~~~~G~~i~~--~p--~~~~~~~~s-~~~~~~~~~~~~~~ 319 (335)
.++|.+|+.++..+|+++.+ .| +.+.+.+.+ +..++|..||..+.
T Consensus 192 ~~ED~~l~~~l~~~G~~~~~~~~~~a~~~~~~p~s~~~~~~QR~RW~~g~ 241 (244)
T cd04190 192 LGEDRILCTLLLKAGPKRKYLYVPGAVAETDVPETFVELLSQRRRWINST 241 (244)
T ss_pred HhcccceeHHHhccCCccEEEEecccEEEEECCCCHHHHHHHhHhhhccc
Confidence 57899999999999999999 77 566666666 43445555555443
No 49
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.87 E-value=1.2e-21 Score=172.22 Aligned_cols=188 Identities=15% Similarity=0.090 Sum_probs=123.2
Q ss_pred EEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 70 LIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 70 Viip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
+|||+||++ +.|.+||+|+.+ | ..|||||||+|+|.+.+..+. ..+ ++.++..++|.|+++|+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~--------q---~~~iivvDn~s~~~~~~~~~~---~~~--~i~~i~~~~n~G~~~a~ 64 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAE--------Q---VDKVVVVDNSSGNDIELRLRL---NSE--KIELIHLGENLGIAKAL 64 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhc--------c---CCEEEEEeCCCCccHHHHhhc---cCC--cEEEEECCCceehHHhh
Confidence 589999999 999999999987 3 579999999998887665433 223 79999999999999999
Q ss_pred HHHHHhcCC---CEEEEEeCCCCCCcchHHHHH---HHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 149 RKGMLHSRG---ELLLMLDADGATKVTDLEKLE---SQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 149 n~g~~~a~~---d~v~~~DaD~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|.|++.+++ |+++++|+|+.++|++|.+++ ..+.++++. .+.|..........
T Consensus 65 N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 123 (237)
T cd02526 65 NIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNI---------------------GAVGPRIIDRRTGE 123 (237)
T ss_pred hHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCe---------------------EEEeeeEEcCCCCe
Confidence 999999987 999999999999999999995 334333322 22222211100000
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh-CCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCEEEee
Q 019818 223 ATRKWYRNFLMKGFHLVVILTA-GPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
... ................. ........+++.+++|++++++.+.... ...++|.|++.|+.++|+++.++|
T Consensus 124 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 124 -NSP-GVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred -ecc-ceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEc
Confidence 000 00000000000000000 0011112233458999999999433222 122469999999999999999998
No 50
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.87 E-value=5.2e-21 Score=175.05 Aligned_cols=216 Identities=20% Similarity=0.200 Sum_probs=151.6
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.+++++||++||..+.+.+||+++.+ |++...++++|||+|+|++.+.+++.. +| +++++..++|.|-
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~--------~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~ 69 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAA--------QTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGF 69 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhc--------CCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccc
Confidence 36799999999999999999999988 567777888999999999998887643 45 8999999999999
Q ss_pred HHHHHHHHHhcCCC---EEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh
Q 019818 145 GEAIRKGMLHSRGE---LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 145 ~~aln~g~~~a~~d---~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 221 (335)
+++.|.|++.|.++ ++++++.|+.+++++|++|++.+++.+..+++.+.....+....+.... +.......
T Consensus 70 agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~-- 143 (305)
T COG1216 70 AGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG----GESDGLTG-- 143 (305)
T ss_pred hhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec----cccccccc--
Confidence 99999999999654 9999999999999999999999999877665444444433333333111 00000000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhCCCCc-cCCCceeeeeHHHHHHhhh-hhhhccccchHHHHHHhHHcCCCEEEee--e
Q 019818 222 LATRKWYRNFLMKGFHLVVILTAGPGIR-DTQCGFKMFTRAAARKLFT-NIRLKRWCFDVELVYLCKRFGIPIIEIS--V 297 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~r~~l~~i~~-~~~~~~~~~D~el~~r~~~~G~~i~~~p--~ 297 (335)
..+....... ........... ...|++.+++++++++++. +.....+.+|.|++.|++++|+++.++| .
T Consensus 144 ---~~~~~~~~~~----~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~ 216 (305)
T COG1216 144 ---GWRASPLLEI----APDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAI 216 (305)
T ss_pred ---cceecccccc----cccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccE
Confidence 0000000000 00000000001 2466678999999999933 3344666779999999999999999999 4
Q ss_pred EEEecCCC
Q 019818 298 NWSEIPGS 305 (335)
Q Consensus 298 ~~~~~~~s 305 (335)
.++..+.|
T Consensus 217 i~H~~g~s 224 (305)
T COG1216 217 IYHKIGSS 224 (305)
T ss_pred EEEeccCC
Confidence 45544443
No 51
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.86 E-value=7.4e-20 Score=180.41 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=137.1
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN- 141 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~- 141 (335)
.+.|.+||+||+|||+++|++++++++.. .+|+++||+|+.+..+++|.+.++++..++| +++++..+.+
T Consensus 68 ~~~~~vsIlVPa~nE~~VI~~~v~~ll~~-------ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~~~g 138 (703)
T PRK15489 68 RDEQPLAIMVPAWKEYDVIAKMIENMLAT-------LDYRRYVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVPHDG 138 (703)
T ss_pred cCCCceEEEEeCCCcHHHHHHHHHHHHhc-------CCCCCeEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcCCCC
Confidence 34568999999999999999999998752 4677899999765556689999999988888 7777776654
Q ss_pred -CChHHHHHHHHHhc-------CC--CEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeee
Q 019818 142 -HGKGEAIRKGMLHS-------RG--ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAF 211 (335)
Q Consensus 142 -~Gk~~aln~g~~~a-------~~--d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (335)
.||+.|+|.|+..+ .+ +.|++.|||+.++|+.|..+ +++...+ ++++
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~----------------------~~iQ 195 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK----------------------DLVQ 195 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc----------------------ceee
Confidence 78999999999886 23 34899999999999999766 4443322 4444
Q ss_pred ecchhhhhHhhhhhhhhHHHHHHHHHHH------HHHHhCCCCccCCCceeeeeHHHHHHh---h--hhhhhccccchHH
Q 019818 212 GSRAHLEEKALATRKWYRNFLMKGFHLV------VILTAGPGIRDTQCGFKMFTRAAARKL---F--TNIRLKRWCFDVE 280 (335)
Q Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~r~~l~~i---~--~~~~~~~~~~D~e 280 (335)
+....... ...++........|... .+...+..++- +|...+|||++++++ . ..++.+..+||+|
T Consensus 196 ~pV~~~~~---~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ipl-~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~D 271 (703)
T PRK15489 196 LPVLSLER---KWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVPS-AGVGTCFSRRALLALMKERGNQPFNTSSLTEDYD 271 (703)
T ss_pred eeeccCCC---ccccHHHHHHHHHHHHHhhhHHHHHHHcCCceec-cCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHH
Confidence 43211110 01233333322222221 22223333432 222458999999887 2 2355667789999
Q ss_pred HHHHhHHcCCCEEEe
Q 019818 281 LVYLCKRFGIPIIEI 295 (335)
Q Consensus 281 l~~r~~~~G~~i~~~ 295 (335)
+.+|+.++|++..+.
T Consensus 272 lg~RL~~~G~r~~f~ 286 (703)
T PRK15489 272 FSFRLAELGMQEIFV 286 (703)
T ss_pred HHHHHHHCCCceEEE
Confidence 999999999999984
No 52
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.86 E-value=8.1e-21 Score=162.02 Aligned_cols=101 Identities=27% Similarity=0.427 Sum_probs=86.9
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC---CCCChHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG---RNHGKGE 146 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~---~~~Gk~~ 146 (335)
||||+|||++.|++||+++.+ |. +++||+||||+|+|+|.++++ +....+ +++++... .+.||+.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~--------~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~--~v~~i~~~~~~~~~Gk~~ 68 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLR--------NK-PNFLVLVIDDASDDDTAGIVR-LAITDS--RVHLLRRHLPNARTGKGD 68 (191)
T ss_pred CEEeccccHHHHHHHHHHHHh--------CC-CCeEEEEEECCCCcCHHHHHh-heecCC--cEEEEeccCCcCCCCHHH
Confidence 699999999999999999988 34 679999999999999999997 433344 78888753 4689999
Q ss_pred HHHHHHHhcC-----------CCEEEEEeCCCCCCcchHHHHHHHHH
Q 019818 147 AIRKGMLHSR-----------GELLLMLDADGATKVTDLEKLESQIH 182 (335)
Q Consensus 147 aln~g~~~a~-----------~d~v~~~DaD~~~~~~~l~~l~~~~~ 182 (335)
|+|.|++.+. +|+|+++|+|+.++|++|.++...+.
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~ 115 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS 115 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc
Confidence 9999999875 37999999999999999999888774
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.84 E-value=3.4e-20 Score=167.75 Aligned_cols=186 Identities=18% Similarity=0.178 Sum_probs=120.4
Q ss_pred eccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHH
Q 019818 73 PAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKG 151 (335)
Q Consensus 73 p~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g 151 (335)
.+||++ +.|.++++++.++ ..|||||||+|+|+ +.+++..+..+ ++++++.++|.|.++|+|.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q-----------~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~G 65 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQ-----------VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQG 65 (281)
T ss_pred CccCccHHHHHHHHHHHHhc-----------CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHH
Confidence 379975 7888888888772 36999999998765 22334334455 79999999999999999999
Q ss_pred HHhc---CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 152 MLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 152 ~~~a---~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
++.| .+|+|+++|+|+.++++++.++++.+++.+.. ..++|++........ ..+..
T Consensus 66 i~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~~~ 124 (281)
T TIGR01556 66 LDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQ--------------------ACALGPRFFDRGTSR-RLPAI 124 (281)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCc--------------------eEEECCeEEcCCCcc-cCCce
Confidence 9998 68999999999999999999999999764311 223333221110000 00000
Q ss_pred H--HHHHHHHHHHHHHHhCCCC-ccCCCceeeeeHHHHHHhhh-hhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 229 R--NFLMKGFHLVVILTAGPGI-RDTQCGFKMFTRAAARKLFT-NIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 229 ~--~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~r~~l~~i~~-~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
. ........ .......... ...++|+ +++|+++++++. +.....+.+|.|+++|+.++|+++.++|
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~sg~-li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 125 HLDGLLLRQIS-LDGLTTPQKTSFLISSGC-LITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDP 194 (281)
T ss_pred eecccceeeec-ccccCCceeccEEEcCcc-eeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeC
Confidence 0 00000000 0000000011 1133444 799999999933 2222234569999999999999999999
No 54
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.84 E-value=3.5e-19 Score=161.05 Aligned_cols=200 Identities=23% Similarity=0.267 Sum_probs=133.6
Q ss_pred EEEEeccCCCCC--hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC---CC
Q 019818 69 SLIIPAFNEEHR--LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN---HG 143 (335)
Q Consensus 69 sViip~~ne~~~--l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~---~G 143 (335)
|||||++|+... |.+.+.+++.++.. .+...++|||||||+|++.+.+.++++.+... ...++..+.+ .|
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~---~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQ---FQSDPDFEIIVVDDGSSDEFDEELKKLCEKNG--FIRYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHh---cCCCCCEEEEEEECCCchhHHHHHHHHHhccC--ceEEEEcCCCCCCcC
Confidence 699999999864 44555555555543 24678999999999999999888888887765 4446665544 49
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHH---HHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES---QIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
++.|+|.|++.|++|+|+++|+|+.++|+.+.++++ .+..++.. ++...+......
T Consensus 76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~---------------------~~~~p~~yl~~~ 134 (281)
T PF10111_consen 76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNA---------------------FLVYPCLYLSEE 134 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCc---------------------eEEEeeeeccch
Confidence 999999999999999999999999999999999999 56554322 222222222211
Q ss_pred hhhhhhhhHHHHHHHHHHHH-HHHhC----CCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCEE
Q 019818 221 ALATRKWYRNFLMKGFHLVV-ILTAG----PGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPII 293 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i~ 293 (335)
.. ................ ..... .......+++.+++|+.+.++++..+ ..+| +||.||+.|+.+.|..+.
T Consensus 135 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~ 212 (281)
T PF10111_consen 135 GS--EKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFK 212 (281)
T ss_pred hh--HHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEe
Confidence 11 1111111000000111 11110 11123445778999999999944433 2344 579999999999999998
Q ss_pred Eee
Q 019818 294 EIS 296 (335)
Q Consensus 294 ~~p 296 (335)
..+
T Consensus 213 ~~~ 215 (281)
T PF10111_consen 213 RSP 215 (281)
T ss_pred cCh
Confidence 887
No 55
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.82 E-value=2.5e-20 Score=154.61 Aligned_cols=108 Identities=29% Similarity=0.484 Sum_probs=95.2
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|.++|+++++ |.+.++||+||||+|+|+|.+.+.+.....+ ..+.++..+++.|++.++|
T Consensus 1 Viip~~n~~~~l~~~l~sl~~--------q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~n 71 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLA--------LDYPKLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDKENGGKAGALN 71 (180)
T ss_pred CeecccChHHHHHHHHHHHHh--------CCCCceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEecccCCchHHHH
Confidence 689999999999999999988 4567899999999999999999988866553 1467788888999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhcc
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~ 186 (335)
.|++.+++|+++++|+|+.+++++|.+++..+...++
T Consensus 72 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 108 (180)
T cd06423 72 AGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPK 108 (180)
T ss_pred HHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999777766544
No 56
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.72 E-value=4.1e-17 Score=143.19 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=90.0
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
|||+||+|||++.|++||+|+..+ ..|||||||||+|+|.+++++. +++++.. ++.|.+.+
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~-----------~~eiivvD~gStD~t~~i~~~~-------~~~v~~~-~~~g~~~~ 62 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWA-----------VDEIIVVDSGSTDRTVEIAKEY-------GAKVYQR-WWDGFGAQ 62 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcc-----------cCEEEEEeCCCCccHHHHHHHc-------CCEEEEC-CCCChHHH
Confidence 899999999999999999999762 2499999999999999988754 5778877 78999999
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhcc
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~ 186 (335)
+|.|+..+++|+|+++|+|..++|+.++.+.+.+.+++.
T Consensus 63 ~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 63 RNFALELATNDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred HHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999977643
No 57
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.69 E-value=9.5e-16 Score=123.84 Aligned_cols=153 Identities=29% Similarity=0.347 Sum_probs=123.1
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
|+||++|+.+.+..+++++.+ +.+.+.|++++||++++++.+.+.+...... .+..+..+++.|++.++|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~--------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 70 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLA--------QTYPNFEVIVVDDGSTDGTLEILEEYAKKDP--RVIRVINEENQGLAAARN 70 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCccceEEEEEeCCCCccHHHHHHHHHhcCC--CeEEEEecCCCChHHHHH
Confidence 689999999999999999987 3556899999999999999999988866523 567777888999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|+..+.+|+++++|+|..++++++..++..+...++. .++.+.
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~--------------------~~v~~~---------------- 114 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEA--------------------DAVGGP---------------- 114 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCc--------------------eEEecc----------------
Confidence 99999999999999999999999999986665544332 455443
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCE
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPI 292 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i 292 (335)
++.++++++++++.+.... ..+.+|.++..++...|..+
T Consensus 115 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~ 154 (156)
T cd00761 115 ------------------------GNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVA 154 (156)
T ss_pred ------------------------chheeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhcccc
Confidence 4568999999999433322 33357999999999888654
No 58
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=2.9e-16 Score=133.60 Aligned_cols=106 Identities=35% Similarity=0.558 Sum_probs=93.6
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|.+||+||+||+++.|.++|+|+.++. +.++|||||||||+|+|.++++++..+.+ .+.......|.|+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~--------~~~~eiivvddgs~d~t~~~~~~~~~~~~--~~~~~~~~~~~g~ 71 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQT--------YKDFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGL 71 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhh--------hcceEEEEEeCCCCCChHHHHHHHhhhcc--eEEEeecccCCCh
Confidence 3679999999999999999999999954 44589999999999999999999987753 5667777789999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
+.|+|.|+..+.+++++++|+|.. +++.+..+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 72 GAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 999999999999999999999999 999988855444
No 59
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.8e-13 Score=131.40 Aligned_cols=216 Identities=19% Similarity=0.117 Sum_probs=153.8
Q ss_pred CCCceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch-HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
...|..||||+.+||+ .++-+++.|+++... +..--|||+|||+|+.+- ...+++..+++. .+++++.++
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp------~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~--~v~i~r~~~ 210 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTP------PYLLKEIILVDDFSDRDHLKDKLEEYVKRFS--KVRILRTKK 210 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCC------hhHeEEEEEeecCcchhhhhhhhHHHHhhhc--ceeEEeecc
Confidence 4478999999999995 456677777776432 334589999999998776 566788878877 599999999
Q ss_pred CCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
+.|...|+..|...|+||+++|+|+-++...+||+.+++.+..+....+..-..++++.++.|..+-....|...
T Consensus 211 R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFd----- 285 (578)
T KOG3736|consen 211 REGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFD----- 285 (578)
T ss_pred hhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecccCccceeeee-----
Confidence 999999999999999999999999999999999999999999876555544455667777777753222222221
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH---HhCCCCccCCCceeeeeHHHHHHhhhhh---hhccccchHHHHHHhHHcCCCEEE
Q 019818 221 ALATRKWYRNFLMKGFHLVVIL---TAGPGIRDTQCGFKMFTRAAARKLFTNI---RLKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~r~~l~~i~~~~---~~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
+....++..-......+. .....-+...||.++++|+.|.+++... +..+ ++..||.+|+...|-++.-
T Consensus 286 ----W~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwG-GENlElSfrvWqCGG~lei 360 (578)
T KOG3736|consen 286 ----WELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWG-GENLELSFRVWQCGGRLEI 360 (578)
T ss_pred ----cceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccC-hhhceeeEEEeccCCeEEe
Confidence 011111111111111121 1222234455777899999999993322 1112 3588999999999999999
Q ss_pred ee
Q 019818 295 IS 296 (335)
Q Consensus 295 ~p 296 (335)
+|
T Consensus 361 ~P 362 (578)
T KOG3736|consen 361 VP 362 (578)
T ss_pred cC
Confidence 98
No 60
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.42 E-value=2.1e-12 Score=115.42 Aligned_cols=201 Identities=13% Similarity=0.062 Sum_probs=144.7
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
+..|.||||.|...-++++-..+++.... .|+++|++++-+.++|+..++++++.++||....+++.-.+..
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesffts--------~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~v 153 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFTS--------QYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKV 153 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHhh--------ccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEccccc
Confidence 46788999999999999998888888875 4559999999999999999999999999997777888877777
Q ss_pred C---hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh
Q 019818 143 G---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219 (335)
Q Consensus 143 G---k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 219 (335)
| |-.++--|.+.++.|+|++.|+|..+.||.+..|...+.++..- ..|.|.+..-+.
T Consensus 154 g~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekm--------------------alvtq~py~~dr 213 (431)
T KOG2547|consen 154 GLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKM--------------------ALVTQTPYCKDR 213 (431)
T ss_pred ccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccce--------------------eeecCCceeecc
Confidence 7 77888889999999999999999999999999999999876554 355554443222
Q ss_pred HhhhhhhhhHHHHHHHHHHH-HHHHhCCCCc---cCCCceeeeeHHHHHHhhhhh-hhccccchHHHHHHhHHcCCCEEE
Q 019818 220 KALATRKWYRNFLMKGFHLV-VILTAGPGIR---DTQCGFKMFTRAAARKLFTNI-RLKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~g~~~~~r~~l~~i~~~~-~~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
++. -..+....+... .+....-+.. ..+|...++|++++++..+-. ......+|+-+......+|++-..
T Consensus 214 ~Gf-----~atle~~~fgTsh~r~yl~~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksai 288 (431)
T KOG2547|consen 214 QGF-----DATLEQVYFGTSHPRIYLSGNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAI 288 (431)
T ss_pred ccc-----hhhhhheeeccCCceEEEccccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 211 000100000000 0111111111 123334679999999984332 234555688888888999987766
Q ss_pred ee
Q 019818 295 IS 296 (335)
Q Consensus 295 ~p 296 (335)
..
T Consensus 289 st 290 (431)
T KOG2547|consen 289 ST 290 (431)
T ss_pred cc
Confidence 54
No 61
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.5e-12 Score=115.48 Aligned_cols=223 Identities=17% Similarity=0.132 Sum_probs=145.5
Q ss_pred CCCceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch-HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
...|+.||||..+||. ..|-+|+.|++.... +..--||+.|||-|+.+- .+.+.+....+.+ -+.|+++++
T Consensus 152 e~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP------~~~l~eivlvDDfSdKehLkekLDeYv~~fnG-lVkV~Rne~ 224 (603)
T KOG3737|consen 152 ENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSP------RKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNG-LVKVFRNER 224 (603)
T ss_pred ccCCcceEEEEEecCccHHHHHHHHHHHhcCc------HHhhheEEEeccCCccHHHHHHHHHHHHHhcC-EEEEEecch
Confidence 4578899999999995 456777777776311 222469999999998764 6777777777763 688999999
Q ss_pred CCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
+.|.-.|+..|.++|.|+.++|+||.+++..+|+..|++++.++...--+.-...++.+++.|- -|.|..... ..
T Consensus 225 REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~Eyr----pvyG~dn~h-~r 299 (603)
T KOG3737|consen 225 REGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYR----PVYGGDNDH-AR 299 (603)
T ss_pred hhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEe----eccCCcchh-hc
Confidence 9999999999999999999999999999999999999999977533222211222233334333 233333211 11
Q ss_pred hhhhhhhhHHHHH-HHHHHHHHHHhCCCCc--cCCCceeeeeHHHHHHhhhh-hhhccc-cchHHHHHHhHHcCCCEEEe
Q 019818 221 ALATRKWYRNFLM-KGFHLVVILTAGPGIR--DTQCGFKMFTRAAARKLFTN-IRLKRW-CFDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~~~r~~l~~i~~~-~~~~~~-~~D~el~~r~~~~G~~i~~~ 295 (335)
+...++.+.+-.. .......+.....++. .-.||.+++.|+.|.+++.. ....-| ++..|+.+++.+.|-+|.++
T Consensus 300 GifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fV 379 (603)
T KOG3737|consen 300 GIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFV 379 (603)
T ss_pred chhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEE
Confidence 1111222111111 1111112222233333 34477889999999998222 111111 35788999999999999999
Q ss_pred ee
Q 019818 296 SV 297 (335)
Q Consensus 296 p~ 297 (335)
|.
T Consensus 380 PC 381 (603)
T KOG3737|consen 380 PC 381 (603)
T ss_pred Ec
Confidence 93
No 62
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.3e-12 Score=115.98 Aligned_cols=212 Identities=16% Similarity=0.099 Sum_probs=138.2
Q ss_pred CCceEEEEEeccCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 64 AEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 64 ~~~~vsViip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
+.|..||||..+||+. .|-+|+.|+++... +..-.|||+|||+|+|.+. ...+ .+.+ +++++++.++.
T Consensus 122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP------~~li~EiILVDD~S~Dped--~~~L-~ri~--kvr~LRN~~Re 190 (559)
T KOG3738|consen 122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSP------EHLIHEIILVDDFSQDPED--GKLL-KRIP--KVRVLRNNERE 190 (559)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHcCCh------HHhhheeEEecCCCCChHH--HHHH-hhhh--eeeeecccchh
Confidence 4778999999999964 46677777776322 2234799999999998753 3333 4445 89999999999
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCccccccccccc-CCCeeeeecchhhhhHh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRIS-DIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~g~~~~~~~~~ 221 (335)
|....++.|...|++.++.|+|+.+++..+||+.|++...++....+..-..++.-.++.|. ..+++-.|--
T Consensus 191 GLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFD------- 263 (559)
T KOG3738|consen 191 GLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFD------- 263 (559)
T ss_pred hhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcc-------
Confidence 99999999999999999999999999999999999999988755443222222222222222 1111111111
Q ss_pred hhhhhhhHHHHHHHHHHHHHH---HhCCCCccCCCceeeeeHHHHHHhhhh-hhhccc-cchHHHHHHhHHcCCCEEEee
Q 019818 222 LATRKWYRNFLMKGFHLVVIL---TAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
++...++.......-.++ .....-+...||.+++.++.|++++.. ....-| ++..|+.+|....|-.+.-+|
T Consensus 264 ---WsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvP 340 (559)
T KOG3738|consen 264 ---WSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVP 340 (559)
T ss_pred ---eEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEe
Confidence 111111111000001111 122334456788889999999998322 111111 457889999999999988888
No 63
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.26 E-value=2.5e-10 Score=95.70 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=96.0
Q ss_pred EEEEcCCCCC---hHHHHHHHHHh-cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCee
Q 019818 134 RIILLGRNHG---KGEAIRKGMLH-SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIA 209 (335)
Q Consensus 134 ~vi~~~~~~G---k~~aln~g~~~-a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (335)
+++..++..| |..++..|++. +++|+++++|+|..++|++|.+++..+.+ ++. .+
T Consensus 5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~v--------------------gl 63 (175)
T PF13506_consen 5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD-PGV--------------------GL 63 (175)
T ss_pred EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC-CCC--------------------cE
Confidence 3555555555 99999999998 99999999999999999999999999976 333 46
Q ss_pred eeecchhhhhHhhhhhhhhHHHHHHHHHHHHHHHh-CCCCccCCCceeeeeHHHHHHhhhh-hhhccccchHHHHHHhHH
Q 019818 210 AFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTA-GPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWCFDVELVYLCKR 287 (335)
Q Consensus 210 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~~D~el~~r~~~ 287 (335)
|.+.....+.. ++................. ........|++.++||++|+++++. .......+|+.+..++.+
T Consensus 64 Vt~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~ 138 (175)
T PF13506_consen 64 VTGLPRGVPAR-----GFWSRLEAAFFNFLPGVLQALGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRA 138 (175)
T ss_pred EEecccccCCc-----CHHHHHHHHHHhHHHHHHHHhcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHH
Confidence 66644332222 1222221111111111111 2245556777889999999999333 223577889999999999
Q ss_pred cCCCEEEeee
Q 019818 288 FGIPIIEISV 297 (335)
Q Consensus 288 ~G~~i~~~p~ 297 (335)
+|+++...|.
T Consensus 139 ~G~~v~~~~~ 148 (175)
T PF13506_consen 139 RGYRVVLSPY 148 (175)
T ss_pred CCCeEEEcch
Confidence 9999999983
No 64
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=3.1e-09 Score=99.30 Aligned_cols=217 Identities=17% Similarity=0.121 Sum_probs=124.7
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHH-----HHHHcC-CCcEEEE
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-----FVRKYT-VDNVRII 136 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-----~~~~~~-~~~i~vi 136 (335)
+...+..|++|+|||+. .+.+..+...-.++.......+++++|+.| |.|+....+++ ++++.. ..+|-+.
T Consensus 141 p~~hrTAilmPiynEd~--~rVfAgLrA~~eSla~Tg~~~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYR 217 (736)
T COG2943 141 PDLHRTAILMPIYNEDV--NRVFAGLRATYESLAATGHAEHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYR 217 (736)
T ss_pred CcccceeEEeeccccCH--HHHHHHHHHHHHHHHhhCCcccceEEEEcC-CCCchhhhhHHHHHHHHHHHhCCCCceeee
Confidence 44456899999999984 344444433222222234566899999999 45554444443 333332 3478888
Q ss_pred EcCCCCC-hHHHHHHHHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeec
Q 019818 137 LLGRNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGS 213 (335)
Q Consensus 137 ~~~~~~G-k~~aln~g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~ 213 (335)
++.+|.| |++++..-.+. ..+++++++|||+.+..+++.++++.++.+++.|.+- .. -.+.|.
T Consensus 218 rRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQ-------------t~-P~~~gg 283 (736)
T COG2943 218 RRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQ-------------TS-PKASGG 283 (736)
T ss_pred hHhhhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceee-------------cc-hhhcCc
Confidence 7778877 55555544444 2459999999999999999999999999998875311 00 122222
Q ss_pred chhhhhHhhhhhhhhHHHHHHHHHHHHHH---HhCCCCccCCCceeeeeHHHHHHh-----hhhhhh---ccccchHHHH
Q 019818 214 RAHLEEKALATRKWYRNFLMKGFHLVVIL---TAGPGIRDTQCGFKMFTRAAARKL-----FTNIRL---KRWCFDVELV 282 (335)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~r~~l~~i-----~~~~~~---~~~~~D~el~ 282 (335)
.... ....+|....+..++.. .....-+..-|...++|.+.|-+. +++... .-...|.-=.
T Consensus 284 ~TL~--------AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEA 355 (736)
T COG2943 284 DTLY--------ARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEA 355 (736)
T ss_pred chHH--------HHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHH
Confidence 2211 11222333333222211 011222334566678999988776 222111 1122255456
Q ss_pred HHhHHcCCCEEEee---eEEEecCC
Q 019818 283 YLCKRFGIPIIEIS---VNWSEIPG 304 (335)
Q Consensus 283 ~r~~~~G~~i~~~p---~~~~~~~~ 304 (335)
..+++.|+.+.-.+ =+|.|.|.
T Consensus 356 ALmRRaGW~v~ia~dL~GSyEE~Pp 380 (736)
T COG2943 356 ALMRRAGWGVWIAYDLDGSYEELPP 380 (736)
T ss_pred HHHhhcCceEEEeccCCCchhhCCc
Confidence 67788998887665 35555443
No 65
>PLN02893 Cellulose synthase-like protein
Probab=99.00 E-value=4.5e-08 Score=96.91 Aligned_cols=161 Identities=12% Similarity=-0.017 Sum_probs=95.8
Q ss_pred hHHHHHHHHHh----cCCCEEEEEeCCCCC-CcchHHHHHHHHHHhc-cccccCCCcccccccccccCCCeeeeecchhh
Q 019818 144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHAVG-RKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL 217 (335)
Q Consensus 144 k~~aln~g~~~----a~~d~v~~~DaD~~~-~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 217 (335)
|++|+|.+++. +.|++|+.+|+|..+ +|+.+.+.+-.|.+.. +..+ ..|+-.....
T Consensus 282 KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~v------------------afVQfPQ~F~ 343 (734)
T PLN02893 282 KAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKL------------------GYVQFPQIFH 343 (734)
T ss_pred ccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCce------------------EEEeCccccc
Confidence 99999999996 679999999999996 6899999998886431 1111 3444322211
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhh-----------------------------
Q 019818 218 EEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFT----------------------------- 268 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~----------------------------- 268 (335)
+ ......+.......+......+.+.......|..+++||+++.....
T Consensus 344 ~---i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 420 (734)
T PLN02893 344 G---INKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALA 420 (734)
T ss_pred C---CCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHh
Confidence 1 00111222222222332333333333333333344799999931100
Q ss_pred ------------------hhhhccccchHHHHHHhHHcCCCEEEeee---EE-EecCCC-cccccchHHHHHHHHHHHhh
Q 019818 269 ------------------NIRLKRWCFDVELVYLCKRFGIPIIEISV---NW-SEIPGS-KVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 269 ------------------~~~~~~~~~D~el~~r~~~~G~~i~~~p~---~~-~~~~~s-~~~~~~~~~~~~~~~~i~~~ 325 (335)
++.....+||....++++.+||+.+|++. .+ ..-|.+ .....|..||..+.+++.+.
T Consensus 421 ~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s 500 (734)
T PLN02893 421 HHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFS 500 (734)
T ss_pred hhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhh
Confidence 01112237899999999999999999842 11 122332 22447888999999988764
No 66
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=98.96 E-value=6e-09 Score=88.64 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=83.1
Q ss_pred EEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh-hhhhhhHHHHHHHHH
Q 019818 159 LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL-ATRKWYRNFLMKGFH 237 (335)
Q Consensus 159 ~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 237 (335)
||+++|+|+.++++++.++++.++ +++. +++.|.....+.+.. ....-..........
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~--------------------~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKV--------------------DAVQGPIIFRNRGSLLTRLQDFEYAISHGLS 59 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCc--------------------eEEEccEEecCCCChhheeehhhhhhhhhhh
Confidence 589999999999999999999997 4433 555555443211100 000001111111111
Q ss_pred HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee--EEEecCCC-cccccchHH
Q 019818 238 LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV--NWSEIPGS-KVNPLSIPN 314 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~--~~~~~~~s-~~~~~~~~~ 314 (335)
.......+. .....|++.++|+++++++.+.......+||.+++.++.++|+++.++|- .+.+.|.+ +...+|..|
T Consensus 60 ~~~~~~~~~-~~~~~G~~~~~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~R 138 (193)
T PF13632_consen 60 RLSQSSLGR-PLFLSGSGMLFRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRR 138 (193)
T ss_pred HHHHHhcCC-CccccCcceeeeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHH
Confidence 112222222 22344566799999999993322346677899999999999999999993 45554544 223355556
Q ss_pred HHHH
Q 019818 315 MLWE 318 (335)
Q Consensus 315 ~~~~ 318 (335)
+..+
T Consensus 139 W~~g 142 (193)
T PF13632_consen 139 WARG 142 (193)
T ss_pred HHhh
Confidence 6555
No 67
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.93 E-value=4.9e-09 Score=95.81 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=82.5
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC----CCC
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR----NHG 143 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~----~~G 143 (335)
+.|+|++||..+.+.++|++++++-. ...+++|+|.+||+.+++.+.++.... .++++..+. +.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p------~~~~~~liIs~DG~~~~~~~~v~~~~~-----~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRP------SAEKFPIIVSQDGGYEEVADVAKSFGD-----GVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccc------cCCCceEEEEeCCCchHHHHHHHhhcc-----ccEEEEcccccccccC
Confidence 57999999999999999999998410 456799999999999988888776631 456665432 211
Q ss_pred ----------hH----HHHHHHHHhcCCCEEEEEeCCCCCCcchH---HHHHHHHHHhcc
Q 019818 144 ----------KG----EAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQIHAVGR 186 (335)
Q Consensus 144 ----------k~----~aln~g~~~a~~d~v~~~DaD~~~~~~~l---~~l~~~~~~~~~ 186 (335)
-+ .|+|.++....++.++++++|+.+.|+++ ..+++.+++++.
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~ 130 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPS 130 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCC
Confidence 12 38999998888999999999999999965 566666665543
No 68
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.88 E-value=3.7e-08 Score=94.88 Aligned_cols=214 Identities=17% Similarity=0.214 Sum_probs=133.9
Q ss_pred CceEEEEEeccCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECC------CCcchHHHHHHHHHH----------
Q 019818 65 EKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG------SSDGTKRVAFDFVRK---------- 127 (335)
Q Consensus 65 ~~~vsViip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~------s~d~t~~~~~~~~~~---------- 127 (335)
.+.+-.+|||||| ++.|..+|+|+..+. ++..+-=|+||.|| .+..|.+++.++...
T Consensus 24 ~~~~i~~v~cy~E~~~~l~~tldsl~~~~------y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~ 97 (527)
T PF03142_consen 24 DKFVICLVPCYSEGEEELRTTLDSLATTD------YDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEP 97 (527)
T ss_pred CceEEEEEccccCChHHHHHHHHHHHhcC------CCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCC
Confidence 3457779999999 566777777776542 34445566667765 445578888775440
Q ss_pred ------------------------cCC-----------Cc-EEEEE----------cCCCCChHHHHHHHHHh-------
Q 019818 128 ------------------------YTV-----------DN-VRIIL----------LGRNHGKGEAIRKGMLH------- 154 (335)
Q Consensus 128 ------------------------~~~-----------~~-i~vi~----------~~~~~Gk~~aln~g~~~------- 154 (335)
+.+ .. +.|+. .+.|+||.-.+-..+..
T Consensus 98 ~~~~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~ 177 (527)
T PF03142_consen 98 LSYVSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFN 177 (527)
T ss_pred cceEEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcC
Confidence 000 01 23333 36688877554222211
Q ss_pred ----------------------cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeee
Q 019818 155 ----------------------SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFG 212 (335)
Q Consensus 155 ----------------------a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g 212 (335)
...|+++.+|||+.+.|+.+.+|+..+.++++.+ .+.|
T Consensus 178 ~~~~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~--------------------gvCG 237 (527)
T PF03142_consen 178 NPMTPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIG--------------------GVCG 237 (527)
T ss_pred CCCchHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeE--------------------EEec
Confidence 1249999999999999999999999998766543 2333
Q ss_pred c-chh-hhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHH-------------hhh---------
Q 019818 213 S-RAH-LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARK-------------LFT--------- 268 (335)
Q Consensus 213 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~-------------i~~--------- 268 (335)
. +.. ...+.......+....++.....+....| .+.-..|+|.+||-++++. ++.
T Consensus 238 ~t~i~n~~~s~~t~~Q~fEY~ish~l~Ka~Es~fG-~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dt 316 (527)
T PF03142_consen 238 ETRIDNKGQSWWTMYQVFEYAISHHLQKAFESVFG-SVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDT 316 (527)
T ss_pred eeEEcCCCCCHhhheeccchhHHHHHHHHHHHHhC-ceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchH
Confidence 1 111 11122223333556666776667766666 5666677888998877664 100
Q ss_pred --hhhhccccchHHHHHHhHHc--CCCEEEee--eEEEecCCC
Q 019818 269 --NIRLKRWCFDVELVYLCKRF--GIPIIEIS--VNWSEIPGS 305 (335)
Q Consensus 269 --~~~~~~~~~D~el~~r~~~~--G~~i~~~p--~~~~~~~~s 305 (335)
.......+||-.++..+.+. +++..++| ..++..|.+
T Consensus 317 lh~~nl~~lGEDR~LttLlLk~~~~~k~~y~~~A~a~T~aP~t 359 (527)
T PF03142_consen 317 LHQKNLLDLGEDRWLTTLLLKQFPGYKTEYVPSAVAYTDAPET 359 (527)
T ss_pred HHHHhhhhcchhHHHHHHHHhhCCCceEEEcccccccccCCcc
Confidence 01123578899999988887 78999998 455555554
No 69
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.80 E-value=1.2e-08 Score=88.54 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
||||+++ |.++.+.+|++++.+ +..++.|.|-+++ .....+.+.+
T Consensus 1 isiI~c~-n~~~~~~~~~~~i~~--------~~~~~~~~i~i~~--------------------------~~~~~s~~~~ 45 (217)
T PF13712_consen 1 ISIIICV-NDEELYEECLRSIKR--------LIGPPGELIEIDN--------------------------VRNAKSMAAA 45 (217)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHHH--------TT--TEEEEEEE---------------------------SSS-S-TTTH
T ss_pred CEEEEEE-CCHHHHHHHHHHHHh--------hCCCCceEEEEec--------------------------cCCCcCHHHH
Confidence 4666655 555567777777766 3455666665554 3334678889
Q ss_pred HHHHHHhcCCCEEEEEeCCCCC-CcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh-hhhh
Q 019818 148 IRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA-LATR 225 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~-~~~~ 225 (335)
+|.|++.|+++|+++++.|..+ +++++..+++.|++.++-++ .=|.|+........ ....
T Consensus 46 yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~------------------iGvaG~~~~~~~~~~w~~~ 107 (217)
T PF13712_consen 46 YNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGM------------------IGVAGSKRLPPNGVWWESP 107 (217)
T ss_dssp HHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEE------------------EESEEEESS-S-TTS---E
T ss_pred HHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccE------------------EEeecCCcCCCCCcccccc
Confidence 9999999999999999999977 68999999999977666543 11223332221110 0000
Q ss_pred ------hhhHHH-HHHHHHHHHHH-------HhCCCCccCCCceeeeeHHHHHHhhhhhhhccc-cchHHHHHHhHHcCC
Q 019818 226 ------KWYRNF-LMKGFHLVVIL-------TAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRW-CFDVELVYLCKRFGI 290 (335)
Q Consensus 226 ------~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~-~~D~el~~r~~~~G~ 290 (335)
..+... ........... ....++...-+.+.+.+++++ . +.+....+| .||.++|++++++|+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~-~-fde~~~~gfH~Ydvd~cl~~~~~G~ 185 (217)
T PF13712_consen 108 NKVGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP-R-FDEDLFTGFHFYDVDQCLEARRAGY 185 (217)
T ss_dssp EEEEETTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB-------SS--SSSSHHHHHHHHHHHTT-
T ss_pred cccccccccccccccccccccccccccccccCCceeEEEecceEEEEEcccC-C-CCccccCCcchHHHHHHHHHHHhCC
Confidence 000000 00000001000 112334445567889999988 1 222223455 569999999999999
Q ss_pred CEEEeee
Q 019818 291 PIIEISV 297 (335)
Q Consensus 291 ~i~~~p~ 297 (335)
++...|.
T Consensus 186 ~v~~~~~ 192 (217)
T PF13712_consen 186 RVVVPPP 192 (217)
T ss_dssp EEEE---
T ss_pred EEEecCc
Confidence 9966664
No 70
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=98.24 E-value=1.3e-05 Score=68.77 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=100.7
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
+++||||-+|.++.|...+.-+...+.. ..-.+.|+|+..... ....++.
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~r-----q~~~~~i~vi~Q~~~-------------------------~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQR-----QQLDYRIFVIEQVGN-------------------------FRFNRAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHh-----cCCcEEEEEEEecCC-------------------------ccchhhh
Confidence 4999999999999999999888887775 345677777763110 1244677
Q ss_pred HHHHHHHhcC----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 147 AIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 147 aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
.+|.|+..|. .+++++-|.|..+..+.+.. ...+.+. .+..+--.
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~---------------------H~s~~~~~------- 101 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPR---------------------HLSVPLDK------- 101 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCccccc---cCCCCCe---------------------EEEEeecc-------
Confidence 8888887763 58899999999988877442 1111111 12211100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhh-hhhcccc-chHHHHHHhHHcCCCEEEee
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWC-FDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~-~D~el~~r~~~~G~~i~~~p 296 (335)
.....+.....||..+++++.+.++.+. ....+|+ ||.||..|+..+|+++...+
T Consensus 102 -------------------~~~~lpy~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~ 158 (219)
T cd00899 102 -------------------FHYKLPYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPS 158 (219)
T ss_pred -------------------cccccCcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEecc
Confidence 0001122234667789999999999333 2334565 79999999999999998886
No 71
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=98.05 E-value=0.00013 Score=65.99 Aligned_cols=172 Identities=17% Similarity=0.225 Sum_probs=91.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---cch---HHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DGT---KRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
.+++||||+.||. ..+|+.++.. .+.+.-||+|.|++. |.- .+.++.++..-. ..+.+++..
T Consensus 50 ~~maIVVP~KnE~---l~lleGVL~g--------IPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~-r~~~~vHQk 117 (381)
T PF09488_consen 50 SKMAIVVPCKNEK---LKLLEGVLSG--------IPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTR-RQIIIVHQK 117 (381)
T ss_dssp TTEEEEEEESS-----HHHHHHHHHC--------S-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT
T ss_pred hCcEEEEECCCCc---hhhhhhhhhc--------CCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhc-CceEEEecC
Confidence 3589999999999 7788888884 555889999999887 443 445555554322 256666664
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCc
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (335)
.. .||+.++-.|+-.|+ .+||.|+|||...| +.+.+-+..+..+
T Consensus 118 Dp~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiP-GaV~EYvk~yAAG---------- 186 (381)
T PF09488_consen 118 DPGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIP-GAVNEYVKDYAAG---------- 186 (381)
T ss_dssp -HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-H-HHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCc-chHHHHHHHHHhh----------
Confidence 32 489999999988774 49999999999765 4555555555332
Q ss_pred ccccccccccCCCeeeeecchhhhhHhh------hhhhhhHHHHHHHHHHHHHHHhCCCCc---cCCCceeeeeHHHHHH
Q 019818 195 VTVDSTFRISDIPIAAFGSRAHLEEKAL------ATRKWYRNFLMKGFHLVVILTAGPGIR---DTQCGFKMFTRAAARK 265 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~v~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~r~~l~~ 265 (335)
+..+.++...+--.+....+-. ..++......+...+.+++...+.... ...+|=.+++-+..+.
T Consensus 187 ------f~ms~spytMVRi~W~~KPKv~~~~lyF~kwGRvSeitN~~LN~L~s~~~gfet~ii~TgNAGEHAMTm~LA~~ 260 (381)
T PF09488_consen 187 ------FAMSESPYTMVRIHWRSKPKVVKGELYFKKWGRVSEITNRYLNRLISAITGFETEIIKTGNAGEHAMTMKLAEK 260 (381)
T ss_dssp ------HHC-SSSCEEEEEE------TT---HHHHHHHHHHHHHHHHHHHHHHHHHSS-------TT-SSEEEEHHHHTT
T ss_pred ------hcccCCCceEEEEEecCCCceecCcEEEeecccccHHHHHHHHHHhccccCCCCceEEccCchhhhhhHHHHHh
Confidence 3333344444443333222221 122233344455556666655554433 2334445666666554
Q ss_pred h
Q 019818 266 L 266 (335)
Q Consensus 266 i 266 (335)
+
T Consensus 261 l 261 (381)
T PF09488_consen 261 L 261 (381)
T ss_dssp S
T ss_pred C
Confidence 4
No 72
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.02 E-value=2.9e-05 Score=58.24 Aligned_cols=79 Identities=28% Similarity=0.270 Sum_probs=53.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC---hHH-HHHH
Q 019818 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG---KGE-AIRK 150 (335)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G---k~~-aln~ 150 (335)
+||+..|++.|+-.++. .--+++|+||||+|+|.++++++ + .+.++....... ... .++.
T Consensus 1 rne~~~L~~wl~~~~~l----------G~d~i~i~d~~s~D~t~~~l~~~----~--~v~i~~~~~~~~~~~~~~~~~~~ 64 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLAL----------GVDHIYIYDDGSTDGTREILRAL----P--GVGIIRWVDPYRDERRQRAWRNA 64 (97)
T ss_pred CChHHHHHHHHHHHHHc----------CCCEEEEEECCCCccHHHHHHhC----C--CcEEEEeCCCccchHHHHHHHHH
Confidence 58888888777766541 23479999999999999998776 3 466665543221 222 3333
Q ss_pred HHHh-cCCCEEEEEeCCCCC
Q 019818 151 GMLH-SRGELLLMLDADGAT 169 (335)
Q Consensus 151 g~~~-a~~d~v~~~DaD~~~ 169 (335)
..+. ..+++++++|+|-.+
T Consensus 65 ~~~~~~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 65 LIERAFDADWVLFLDADEFL 84 (97)
T ss_pred HHHhCCCCCEEEEEeeeEEE
Confidence 3333 367999999999865
No 73
>PLN02189 cellulose synthase
Probab=98.01 E-value=7.9e-05 Score=76.28 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=83.4
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHH------------
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR------------ 126 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~------------ 126 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.++
T Consensus 328 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~ 401 (1040)
T PLN02189 328 NMLSPVDIFVSTVDPLKEPPLVTANTVLSILAM------DYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKF 401 (1040)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceeEEEecCCchHHHHHHHHHHHHHHHhhccccccc
Confidence 357889999999665432 33455555553 56888999999999999888877766432
Q ss_pred ----------------------------------------------------HcCC------------------------
Q 019818 127 ----------------------------------------------------KYTV------------------------ 130 (335)
Q Consensus 127 ----------------------------------------------------~~~~------------------------ 130 (335)
+.|+
T Consensus 402 ~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQ 481 (1040)
T PLN02189 402 SIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQ 481 (1040)
T ss_pred CCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHH
Confidence 0000
Q ss_pred ----------------CcEEEEEcCCCCC-----hHHHHHHHHHh----cCCCEEEEEeCCCCCC-cchHHHHHHHHHH
Q 019818 131 ----------------DNVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA 183 (335)
Q Consensus 131 ----------------~~i~vi~~~~~~G-----k~~aln~g~~~----a~~d~v~~~DaD~~~~-~~~l~~l~~~~~~ 183 (335)
.++.++.+++++| |++|+|..++. +.+++|+.+|+|..+. +..+.+.+=.|.+
T Consensus 482 Vll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD 560 (1040)
T PLN02189 482 VFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 560 (1040)
T ss_pred HHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence 0145555555555 99999999955 5799999999999985 5889988888765
No 74
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.01 E-value=9.3e-05 Score=74.58 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=83.1
Q ss_pred HHHHHHhcCC--CEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 148 IRKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 148 ln~g~~~a~~--d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
++........ ++|+++|+|+.+.|+++.+|++.|+.++..|.+.|...+.. ++.....
T Consensus 430 ~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~--------------------~~w~v~~ 489 (862)
T KOG2571|consen 430 MYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKG--------------------GSWVVAY 489 (862)
T ss_pred HHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCC--------------------CceEEeH
Confidence 3444444433 78899999999999999999999998877765444321111 1111122
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhh-----hhh-------hhccccchHHHHHHhHHcCCCEE
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLF-----TNI-------RLKRWCFDVELVYLCKRFGIPII 293 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~-----~~~-------~~~~~~~D~el~~r~~~~G~~i~ 293 (335)
.-+...+++.........+| .+.-..|+|.+||-+++..-. +.. ....+++|-.||.++..+||+++
T Consensus 490 Q~FEY~Ish~l~Ka~ESvFG-~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~ 568 (862)
T KOG2571|consen 490 QNFEYAISHNLQKATESVFG-CVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLK 568 (862)
T ss_pred HHHHHHHHHHHHHhhhhhce-eEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceee
Confidence 33444444444444444444 344566778899997765432 111 11347789999999999999999
Q ss_pred Eeee
Q 019818 294 EISV 297 (335)
Q Consensus 294 ~~p~ 297 (335)
|++.
T Consensus 569 Y~a~ 572 (862)
T KOG2571|consen 569 YVAA 572 (862)
T ss_pred eecc
Confidence 9974
No 75
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.98 E-value=0.00046 Score=62.21 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=99.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcc------hHHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG------TKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~------t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
..++||||+.||. ..+|+-++.. .+.+.-||+|.|++.++ -.+.++.++.-- ...+-+++..
T Consensus 50 ~~maIVVP~KdE~---l~lleGVL~g--------IPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t-~r~~i~vHQk 117 (381)
T TIGR02460 50 GKTAIVVPVKNEK---LHLLEGVLSG--------IPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLT-HRKIIIIHQK 117 (381)
T ss_pred hCcEEEEEcCCCc---hhHHhhHhhc--------CCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhh-cCceEEEEcC
Confidence 4689999999998 6677888874 55578999999987633 233444444321 1245555553
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCc
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (335)
.. .||+.++-.|+-.|+ .+||.|+|||..+|- .+.+-+..+..+
T Consensus 118 Dp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG-aV~EYvk~yAaG---------- 186 (381)
T TIGR02460 118 DPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG-AVNEYVKIYAAG---------- 186 (381)
T ss_pred CHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc-hHHHHHHHHHhh----------
Confidence 22 478888888887774 499999999998764 444445544332
Q ss_pred ccccccccccCCCeeeee----cchhhhhHhh--hhhhhhHHHHHHHHHHHHHHHhCCCCc---cCCCceeeeeHHHHHH
Q 019818 195 VTVDSTFRISDIPIAAFG----SRAHLEEKAL--ATRKWYRNFLMKGFHLVVILTAGPGIR---DTQCGFKMFTRAAARK 265 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~v~g----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~r~~l~~ 265 (335)
+..+.++...+- +..+..++.+ ..++......++..+.+...+.+.... ...+|=.+++++.++.
T Consensus 187 ------f~ma~spy~MVRi~W~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~~gfet~ii~TGnAGEhAmt~~La~~ 260 (381)
T TIGR02460 187 ------FLMATSPYSMVRIHWRYKPKLTKGTLYFRKWGRVSEITNHYLNLLISEHTGFETDIIKTGNAGEHALTMKLAEI 260 (381)
T ss_pred ------hcccCCCCeeEEEEecCCCceecCeEEEcCCCchhHHHHHHHHHHHHhhccccCcceecccchhhhhhHHHHhh
Confidence 111111122111 1111111111 122333444445555555554443332 3355556899999988
Q ss_pred h
Q 019818 266 L 266 (335)
Q Consensus 266 i 266 (335)
+
T Consensus 261 l 261 (381)
T TIGR02460 261 L 261 (381)
T ss_pred C
Confidence 7
No 76
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.88 E-value=0.00041 Score=67.71 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=87.7
Q ss_pred CCCceEEEEEeccCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-Ccc-----hHHHHHHHHHHcCCCcEEE
Q 019818 63 PAEKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDG-----TKRVAFDFVRKYTVDNVRI 135 (335)
Q Consensus 63 ~~~~~vsViip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~-----t~~~~~~~~~~~~~~~i~v 135 (335)
.....|.||||+.+. .+.+.+.|+...+.+.. +..+..++||..++ .|. ..+.++++.++++..++.+
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~-----~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~ 318 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLE-----TDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKW 318 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcc-----cCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEE
Confidence 345789999999999 77777777777666543 45566666666554 222 2347788888888778999
Q ss_pred EEcC-CCCChHHHHHHHHHhcC-CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 136 ILLG-RNHGKGEAIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 136 i~~~-~~~Gk~~aln~g~~~a~-~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
+... .+..++.|+..|++... .++++++|.|..+++++|.+.-..-
T Consensus 319 i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nt 366 (499)
T PF05679_consen 319 ISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNT 366 (499)
T ss_pred EEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhh
Confidence 9988 77889999999999764 5888999999999999998876544
No 77
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.83 E-value=0.0012 Score=60.02 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=70.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcc------hHHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG------TKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~------t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
..++||||+.||. ..+|+-++.. .+.+.-||+|.|++.++ -.+.++.++.-- ...+-+++..
T Consensus 51 ~~mAIVVP~KdE~---l~lleGVL~g--------IPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t-~r~~i~vHQk 118 (393)
T PRK14503 51 GRMAIVVPVKNER---LKLLEGVLKG--------IPHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLT-QRPIIIVHQK 118 (393)
T ss_pred hCcEEEEEcCCCc---hhHHhhHhhc--------CCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhh-cCceEEEEcC
Confidence 4689999999998 6778888874 55578999999976632 233444444321 1245555553
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
.. .||+.++-.|+-.|+ .+||.|+|||..+|- .+.+-+..+
T Consensus 119 Dp~la~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG-aV~EYvk~y 184 (393)
T PRK14503 119 DPGLAEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG-AVNEYVKIY 184 (393)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc-hHHHHHHHH
Confidence 22 478888888887774 499999999998764 444445444
No 78
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.0028 Score=55.23 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=71.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHH--HhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC-
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQ--QRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH- 142 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~--~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~- 142 (335)
+.++++||+-- .+.++.|-..+...+. .-+ ++....+||++++.+.-+ ..++.+....+ ++.++......
T Consensus 2 ~~~~~iiPv~~-S~e~p~~~~R~f~~~~~~k~f--ts~~~~~vi~~~~~~~~d--~~i~~~i~~~~--~~~yl~~~s~~~ 74 (346)
T COG4092 2 QPNGEIIPVAE-SEELPLTDSRQFSRTSAVKVF--TSSDITMVICLRAHEVMD--RLIRSYIDPMP--RVLYLDFGSPEP 74 (346)
T ss_pred CCcceEeecch-hhccchhHHHHHhhHhhhhhc--cccccEEEEEEecchhHH--HHHHHHhcccc--ceEEEecCCCcc
Confidence 34889999843 3445666555555221 111 567789999999876433 55666777777 77776654321
Q ss_pred --ChHHHHHHHHHhcC----CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 143 --GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 143 --Gk~~aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
..+...|.|...+. +++|+++|+|+....|...+++.-.
T Consensus 75 F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~ 119 (346)
T COG4092 75 FASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIA 119 (346)
T ss_pred ccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHH
Confidence 12445566666665 8999999999999977777776443
No 79
>PLN02195 cellulose synthase A
Probab=97.64 E-value=0.00043 Score=70.65 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=41.8
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ..+|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EA 308 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAV------DYPVDKVSCYVSDDGAAMLSFESLVET 308 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceEEEEecCCchHHHHHHHHHH
Confidence 458899999999665432 33455555554 568899999999999998888777664
No 80
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.59 E-value=0.00039 Score=65.57 Aligned_cols=185 Identities=16% Similarity=0.104 Sum_probs=97.5
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC---
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--- 139 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--- 139 (335)
...+.+-|+|-++|....+.+||+++++.-. ....+.|+|-.||+.+.+.+.++++... +..++.+
T Consensus 90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp------~~~~fpIiVSQDg~~~~~~~vi~~y~~~-----v~~i~~~~~~ 158 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYRP------SAEKFPIIVSQDGDDEEVAEVIKSYGDQ-----VTYIQHPDFS 158 (434)
T ss_dssp -------EEEEESS-TT-HHHHHHHHHHH-S-------TTTS-EEEEE-TT-HHHHHHHHGGGGG-----SEEEE-S--S
T ss_pred cCCCcceEEEEecCCcHHHHHHHHHHHHcCC------CCCCccEEEEecCCcHHHHHHHHHhhhh-----heeeecCCcC
Confidence 3466789999999999999999999998521 2346889999999999998888776432 3333322
Q ss_pred ------CC-C---------ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHH--HhccccccCCCcccccccc
Q 019818 140 ------RN-H---------GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH--AVGRKEYNHGDSVTVDSTF 201 (335)
Q Consensus 140 ------~~-~---------Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 201 (335)
.. . ....|++..+..-..+.++++..|..+.||++.-+.+... +. +..+
T Consensus 159 ~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~-D~sl------------ 225 (434)
T PF03071_consen 159 PITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLEN-DPSL------------ 225 (434)
T ss_dssp -----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH--TTE------------
T ss_pred CceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhc-CCCe------------
Confidence 11 0 1223445555444578999999999999999987776653 22 1111
Q ss_pred cccCCCeeeeecchhhhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHH
Q 019818 202 RISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEL 281 (335)
Q Consensus 202 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el 281 (335)
-+|-+-. .++.. ...... ....+.......+.| -|++|+..+++-+.|.... .|..|
T Consensus 226 ------~ciSawN--dnG~~--------~~~~~~---~~~~lyRsdffpglG--Wml~r~~w~el~~~Wp~~~--WDdwm 282 (434)
T PF03071_consen 226 ------WCISAWN--DNGKE--------HFVDDS---RPSLLYRSDFFPGLG--WMLTRELWDELEPKWPKAF--WDDWM 282 (434)
T ss_dssp ------EEEES----TT-BG--------GGS-TT----TT-EEEESS---SS--EEEEHHHHHHHGGG--SS---HHHHH
T ss_pred ------EEEEccc--cCCcc--------ccccCC---CccceEecccCCchH--HHhhHHHHHhhcccCCCCC--chhhh
Confidence 2332221 11100 000000 001122222333333 5899999999877776443 48888
Q ss_pred HHHhHHcCCCEEE
Q 019818 282 VYLCKRFGIPIIE 294 (335)
Q Consensus 282 ~~r~~~~G~~i~~ 294 (335)
-....++|-.+..
T Consensus 283 R~~~~rkgR~cIr 295 (434)
T PF03071_consen 283 RQPEQRKGRQCIR 295 (434)
T ss_dssp TSHHHHTT-EEEE
T ss_pred cCccccCCCceee
Confidence 8889999955554
No 81
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=97.54 E-value=0.00073 Score=69.69 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=83.4
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHH------------
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR------------ 126 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~------------ 126 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.++
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~ 419 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAV------DYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhh------cccccceeEEEecCCchHHHHHHHHHHHHHHHhhccccccc
Confidence 457889999999665433 33455555554 56888999999999999888877766432
Q ss_pred ----------------------------------------------------HcCC------------------------
Q 019818 127 ----------------------------------------------------KYTV------------------------ 130 (335)
Q Consensus 127 ----------------------------------------------------~~~~------------------------ 130 (335)
+.|+
T Consensus 420 ~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~dHp~Iiq 499 (1079)
T PLN02638 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQ 499 (1079)
T ss_pred CCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCccCCCCCCCCCHHHHH
Confidence 0000
Q ss_pred ----------------CcEEEEEcCCCCC-----hHHHHHHHHHhc----CCCEEEEEeCCCCCC-cchHHHHHHHHHH
Q 019818 131 ----------------DNVRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGATK-VTDLEKLESQIHA 183 (335)
Q Consensus 131 ----------------~~i~vi~~~~~~G-----k~~aln~g~~~a----~~d~v~~~DaD~~~~-~~~l~~l~~~~~~ 183 (335)
.++.++.+++++| |++|+|..++.+ .+++|+.+|+|..+. |..+.+.+=.|-+
T Consensus 500 Vll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD 578 (1079)
T PLN02638 500 VFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD 578 (1079)
T ss_pred HHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence 0124455555555 999999999654 799999999999775 9999998888764
No 82
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.21 E-value=0.016 Score=57.85 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=70.4
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---cc---hHHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
..++||||+.||. ..+|+-++.. .+.+.-||||.|++. |. -.+.++.++.-- ...+-+++..
T Consensus 55 ~~~aivvp~k~e~---~~~~~gvl~~--------ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~-~~~~~~vhq~ 122 (694)
T PRK14502 55 KKMAIVLPIKDED---LKVFEGVLSG--------IPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRIT-HRQAIVVHQK 122 (694)
T ss_pred hCcEEEEEcCCCc---hhHHhhHhhc--------CCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhh-cCceEEEEcC
Confidence 4689999999998 6778888874 555789999999775 32 233444444322 1245555543
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
.. .||+.++-.|+-.|+ .+||.|+|||..+|-. +.+-+..+
T Consensus 123 dp~~a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~-v~ey~~~y 188 (694)
T PRK14502 123 NPELANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA-VWEYAKHF 188 (694)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch-HHHHHHHH
Confidence 21 479999888887775 4999999999987754 44444444
No 83
>PLN02190 cellulose synthase-like protein
Probab=97.20 E-value=0.003 Score=63.12 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=40.9
Q ss_pred CCceEEEEEeccC---CCCC-hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHH
Q 019818 64 AEKYISLIIPAFN---EEHR-LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV 125 (335)
Q Consensus 64 ~~~~vsViip~~n---e~~~-l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~ 125 (335)
..|.|.|.|+++| |+.. ..+|+.|+++. ++|..++-++|.|||...-|.+.+.+.+
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~------dYP~eklscYvSDDG~s~LT~~al~EAa 150 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAV------NYPANKLACYVSDDGCSPLTYFSLKEAS 150 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhc------cCCccccceEEecCCCcHhHHHHHHHHH
Confidence 4688999999999 5432 22333444432 5688899999999999998888776643
No 84
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=97.10 E-value=0.0026 Score=56.90 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=74.9
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEE-------E
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII-------L 137 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi-------~ 137 (335)
+-..+-.|-+.||+.+|+++|+|++..++ |.++.=|.|+|+|.|++.++++++|. -+.+. .
T Consensus 86 pl~~~~~iRvKnE~~tl~~si~S~Lpai~-----------~gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~~ 153 (347)
T PF06306_consen 86 PLNPWAFIRVKNEAMTLAESIESILPAID-----------EGVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVIIK 153 (347)
T ss_pred CCCcceEEEEcchhhhHHHHHHHHHHHHh-----------ccEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhcc
Confidence 34578899999999999999999999765 67888888999999999999999994 22221 1
Q ss_pred cCCC--CChHHHHHHHHHhc-CCCEEEEEeCCCCCCcchHHH
Q 019818 138 LGRN--HGKGEAIRKGMLHS-RGELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 138 ~~~~--~Gk~~aln~g~~~a-~~d~v~~~DaD~~~~~~~l~~ 176 (335)
.++. -....=.|.++... +.+|++=+|+|-..+++.|.+
T Consensus 154 n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~k 195 (347)
T PF06306_consen 154 NPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYK 195 (347)
T ss_pred CCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhh
Confidence 1110 01233346666654 579999999999999887644
No 85
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.05 E-value=0.007 Score=53.64 Aligned_cols=111 Identities=18% Similarity=0.141 Sum_probs=76.5
Q ss_pred CCCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--cchHHHHHHHHHHc--------CCC
Q 019818 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS--DGTKRVAFDFVRKY--------TVD 131 (335)
Q Consensus 62 ~~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~--------~~~ 131 (335)
....++|-|+.|..|.+..+++.++.+.... +|...+.+-++.+.++ |.|.+.+++..++. +..
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L~------YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~ 94 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSLT------YPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFR 94 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhCC------CCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcc
Confidence 3456789999999999988888887777652 4677788877777788 88988887554331 122
Q ss_pred cEEEEEcCCC---------C-----------ChHHHHHHHHHhc---CCCEEEEEeCCCCC-CcchHHHHH
Q 019818 132 NVRIILLGRN---------H-----------GKGEAIRKGMLHS---RGELLLMLDADGAT-KVTDLEKLE 178 (335)
Q Consensus 132 ~i~vi~~~~~---------~-----------Gk~~aln~g~~~a---~~d~v~~~DaD~~~-~~~~l~~l~ 178 (335)
.|+++..+-. + --+.|+|..+..+ ..+||+.+|+|..- +|+.|+.|+
T Consensus 95 ~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli 165 (269)
T PF03452_consen 95 SITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLI 165 (269)
T ss_pred eEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHH
Confidence 6777665421 0 1345667766666 35999999999975 555555554
No 86
>PLN02436 cellulose synthase A
Probab=96.83 E-value=0.0098 Score=61.56 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=41.6
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EA 421 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAV------DYPVDKVACYVSDDGAAMLTFEALSET 421 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceEEEEecCCchHHHHHHHHHH
Confidence 458889999999665432 33555555554 568889999999999998887777654
No 87
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.011 Score=53.90 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-Ccch--HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGT--KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~t--~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
..|.|.+++|...+...+.....++.. .+..+.+++|+-=|+ .|+- .+....++.+++ ++.++....
T Consensus 227 ~~pgih~i~pl~gr~~~f~rf~q~~c~--------~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~--~~q~l~lng 296 (494)
T KOG3588|consen 227 EDPGIHMIMPLRGRAAIFARFAQSICA--------RGDDRLALSVVYFGYSEDEMAKRETITSLRASFI--PVQFLGLNG 296 (494)
T ss_pred cCCCceEEEeccchHHHhhhhhHHHhc--------cCCCceEEEEEEecCCChHHHhhhHHHHHhhcCC--ceEEecccc
Confidence 346699999999998888777775544 366678877765443 3332 344556777777 788887776
Q ss_pred CCChHHHHHHHHHhcCCC-EEEEEeCCCCCCcchHHHHH
Q 019818 141 NHGKGEAIRKGMLHSRGE-LLLMLDADGATKVTDLEKLE 178 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d-~v~~~DaD~~~~~~~l~~l~ 178 (335)
...++.||..|.+.-..+ .+.|+|.|.....++|.+.-
T Consensus 297 eFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr 335 (494)
T KOG3588|consen 297 EFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCR 335 (494)
T ss_pred hhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHh
Confidence 677899999999998654 55567999998888877654
No 88
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.032 Score=50.47 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=98.1
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
...-+|+||||-+|.++.|.-.|.-+...+.+ ..-.|.|+||.-...+ ..
T Consensus 148 ~ar~kvAIIIPfR~Re~HL~~~l~~LhP~Lqr-----QrL~y~iyVieQ~g~~-------------------------~F 197 (372)
T KOG3916|consen 148 QARHKVAIIIPFRNREEHLRYLLHHLHPFLQR-----QRLDYRIYVIEQAGNK-------------------------PF 197 (372)
T ss_pred CccceeEEEeecccHHHHHHHHHHHhhHHHHh-----hhhceeEEEEEecCCC-------------------------cc
Confidence 34568999999999999999988888877664 3446777777642221 23
Q ss_pred ChHHHHHHHHHhcC----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhh
Q 019818 143 GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 143 Gk~~aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
.++.-+|.|+..|. -|-++|-|.|..+..| ...| .|--+.|-
T Consensus 198 NRakL~NVGf~eAlkd~~wdCfIFHDVDllPenD-------------rNlY------------------~C~~~PRH--- 243 (372)
T KOG3916|consen 198 NRAKLLNVGFLEALKDYGWDCFIFHDVDLLPEND-------------RNLY------------------GCPEQPRH--- 243 (372)
T ss_pred cHHHhhhhHHHHHHHhcCCCEEEEecccccccCC-------------CCcc------------------CCCCCCcc---
Confidence 36667788887773 3778888999876543 1111 11111110
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh-hhccc-cchHHHHHHhHHcCCCEEEee
Q 019818 219 EKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI-RLKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~-~~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
+...+.......+....-||-.+++++-+.++.+.. ...+| +||-||..|+..+|++|..-|
T Consensus 244 ----------------~sva~dk~gy~LPY~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~ 307 (372)
T KOG3916|consen 244 ----------------MSVALDKFGYRLPYKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPP 307 (372)
T ss_pred ----------------hhhhhhhccccccchhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCC
Confidence 000111222233444456777789999999993222 12223 469999999999999998665
No 89
>PLN02400 cellulose synthase
Probab=96.62 E-value=0.011 Score=61.47 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=41.7
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~Al~Ea 412 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAV------DYPVDKVSCYVSDDGSAMLTFEALSET 412 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceEEEEecCCchHHHHHHHHHH
Confidence 458889999999665432 33455555553 568999999999999998888777664
No 90
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.49 E-value=0.027 Score=49.35 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=60.0
Q ss_pred CCCCceEEEEEE-CCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc---CCCEEEEE--eCCCCCCcc
Q 019818 99 DKSFTYEVLIID-DGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS---RGELLLML--DADGATKVT 172 (335)
Q Consensus 99 ~~~~~~eiivvd-d~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a---~~d~v~~~--DaD~~~~~~ 172 (335)
|+..++..+|+- +.+.+.-.+.++++.+.+| +++++..++. ....++..++..+ .+++++.+ |+|+.++.+
T Consensus 54 QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~d 130 (234)
T PF11316_consen 54 QTDQDFTWLVLFDDDLPEPYRERLRDLLADYP--QFRIVFRPPG-PHRDAMRRAINAARRDGADPVLQFRLDDDDALHRD 130 (234)
T ss_pred ccCCCeEEEEEECCCCCHHHHHHHHHHhccCC--CcEEEecCCc-hHHHHHHHHHhhhccCCCCEEEEEEECCcchhhHH
Confidence 677899998854 4455556778999988888 7777776643 2556666666433 34666665 999999999
Q ss_pred hHHHHHHHHH
Q 019818 173 DLEKLESQIH 182 (335)
Q Consensus 173 ~l~~l~~~~~ 182 (335)
+++++-+...
T Consensus 131 FV~rlr~~a~ 140 (234)
T PF11316_consen 131 FVARLRRAAA 140 (234)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 91
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=96.32 E-value=0.018 Score=59.60 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=41.9
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EA 343 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILAV------DYPVDKVSCYVSDDGASMLLFDTLSET 343 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceeEEEecCCchHhHHHHHHHH
Confidence 358889999998665432 33455555554 568889999999999998888877664
No 92
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=95.58 E-value=0.35 Score=42.51 Aligned_cols=108 Identities=22% Similarity=0.175 Sum_probs=73.8
Q ss_pred EEEEeccCCCCChHHHHH-HHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcE--EEEEcCCCCC--
Q 019818 69 SLIIPAFNEEHRLPGALD-ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNV--RIILLGRNHG-- 143 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~-sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i--~vi~~~~~~G-- 143 (335)
=|-.-.||.++.|+.... ++++....+ .+.+.-|-|+++||.|+|.+.++.+.......+| .+...+....
T Consensus 3 fIA~~l~~~~~iL~~~~~~~ll~li~~L----Gp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~ 78 (241)
T PF11735_consen 3 FIAANLYNNEDILPSLWGDALLELIRFL----GPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDE 78 (241)
T ss_pred EEEEEcccCHhHHHHHHHHHHHHHHHHh----CcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCccccc
Confidence 344456888899998887 888887776 3457888899999999999999998844332222 2222111110
Q ss_pred ------------hHHHHHHHHHhc---------CCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 144 ------------KGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 144 ------------k~~aln~g~~~a---------~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
.+.-+|.|++-- ..+.|++++ |....++.+.+|+..-
T Consensus 79 ~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~ 136 (241)
T PF11735_consen 79 IERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTR 136 (241)
T ss_pred ccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhc
Confidence 245677777532 237899998 8888888887877654
No 93
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=95.31 E-value=0.039 Score=55.22 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=38.6
Q ss_pred EEEEEcCCCCC-----hHHHHHHHHHhc----CCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 133 VRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 133 i~vi~~~~~~G-----k~~aln~g~~~a----~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
+.++.+++++| |++|+|.-++.+ .+++|+.+|+|.. -+|..+.+.+=.|-+
T Consensus 168 lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d 228 (720)
T PF03552_consen 168 LVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMD 228 (720)
T ss_pred EEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhcc
Confidence 44455555555 999999998764 6899999999995 478888887777654
No 94
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=95.11 E-value=0.025 Score=50.09 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=61.9
Q ss_pred EEEEEec-cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 68 ISLIIPA-FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 68 vsViip~-~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
+||+|.+ |+..+.|.++|+.+.+ ...--||+||=++....-.. ....... ..|+++..+.|. -.
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~---------~~~l~~IvVvWn~~~~~P~~--~~~~~~~--vpV~~~~~~~ns--Ln 65 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLAS---------SPSLRKIVVVWNNPNPPPPS--SKWPSTG--VPVRVVRSSRNS--LN 65 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTT---------STTEEEEEEEEE-TS--THH--HHHT-----S-EEEEEESSHH--GG
T ss_pred CEEEEEecccchHHHHHHHHHHHc---------CCCCCeEEEEeCCCCCCCcc--cccCCCC--ceEEEEecCCcc--HH
Confidence 5889999 8887777777766633 34457788876652222111 1221111 268888765431 11
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccc
Q 019818 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 147 aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~ 187 (335)
++-.-....+++.|+.+|+|..++.+.|+...+..++.++.
T Consensus 66 nRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdr 106 (247)
T PF09258_consen 66 NRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDR 106 (247)
T ss_dssp GGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTS
T ss_pred hcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhh
Confidence 22222345678999999999999999999999999877653
No 95
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=95.09 E-value=0.089 Score=41.53 Aligned_cols=78 Identities=21% Similarity=0.393 Sum_probs=53.0
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.-+++||||-+|.++.|...|.-+...+.. ....+.|+||.-..+ . ...+
T Consensus 46 ~~kvAiIIPyRdR~~hL~~fl~~l~~~L~r-----Q~~~y~I~vieQ~~~-~------------------------~FNR 95 (136)
T PF13733_consen 46 RHKVAIIIPYRDREEHLRIFLPHLHPFLQR-----QQLDYRIFVIEQVDN-G------------------------PFNR 95 (136)
T ss_dssp S-EEEEEEEESS-HHHHHHHHHHHHHHHHH-----TT-EEEEEEEEE-SS-S---------------------------H
T ss_pred ccceEEEEEeCCHHHHHHHHHHHHHHHHhh-----CcceEEEEEEeeccC-C------------------------CCch
Confidence 458999999999999999988888877765 234788888875321 1 2346
Q ss_pred HHHHHHHHHhc----CCCEEEEEeCCCCCCcc
Q 019818 145 GEAIRKGMLHS----RGELLLMLDADGATKVT 172 (335)
Q Consensus 145 ~~aln~g~~~a----~~d~v~~~DaD~~~~~~ 172 (335)
+.-+|.|+..| ..|.++|=|.|..+..+
T Consensus 96 g~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 96 GKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 66778888776 35899999999876544
No 96
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=95.06 E-value=0.12 Score=43.99 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=90.0
Q ss_pred CceEEEEEECCCC--cch-HHHHHHHHHHcCCCcEEEEEcCCC---CC-hH-HHHHHHHHhcC-CCEEEEEeCCCCCCcc
Q 019818 102 FTYEVLIIDDGSS--DGT-KRVAFDFVRKYTVDNVRIILLGRN---HG-KG-EAIRKGMLHSR-GELLLMLDADGATKVT 172 (335)
Q Consensus 102 ~~~eiivvdd~s~--d~t-~~~~~~~~~~~~~~~i~vi~~~~~---~G-k~-~aln~g~~~a~-~d~v~~~DaD~~~~~~ 172 (335)
...+++++-..+. +.. .+.+.+-.+++. .+-.....+. .. |. .+++.+.+++. .++++.+|+|..+.++
T Consensus 19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~--Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYG--DILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD 96 (195)
T ss_pred CcEEEEEEEecCCCCcHHHHHHhhhhhhhcC--ceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence 5677777766555 332 333444445566 5655555443 22 22 56777777776 7999999999999998
Q ss_pred hHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCC
Q 019818 173 DLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQ 252 (335)
Q Consensus 173 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
.|...+......... ..+.|........ . .....+...... ......-.....
T Consensus 97 ~l~~~L~~~~~~~~~--------------------~~~~g~~~~~~~~-~-r~~~~kw~v~~~-----~y~~~~yP~y~~ 149 (195)
T PF01762_consen 97 RLVSFLKSLKQDPSK--------------------NSIYGGCIKNGPP-I-RDPSSKWYVSEE-----EYPDDYYPPYCS 149 (195)
T ss_pred HhhhhhhhcccCccc--------------------cccccccccCCcc-c-cccccCceeeee-----ecccccCCCcCC
Confidence 887777666211222 2333333211100 0 000001000000 000011122234
Q ss_pred CceeeeeHHHHHHhhhhhh--hccccchHHHHHHhHHcCCCEEEe
Q 019818 253 CGFKMFTRAAARKLFTNIR--LKRWCFDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 253 ~g~~~~~r~~l~~i~~~~~--~~~~~~D~el~~r~~~~G~~i~~~ 295 (335)
|++.++++++++.+..... ..-..+|.-+...+.+.|.+....
T Consensus 150 G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~ 194 (195)
T PF01762_consen 150 GGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHD 194 (195)
T ss_pred CCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCC
Confidence 5677999999999944322 223345999999999998765443
No 97
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=94.92 E-value=0.13 Score=41.95 Aligned_cols=94 Identities=11% Similarity=0.200 Sum_probs=67.2
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~ 150 (335)
+|. ++...|+.+++.+.+. ..-+|+|+... ++..+ .+ .+. ++.++..+ ...|-..++..
T Consensus 19 ~~i-~g~~li~~~l~~l~~~----------~~~~Ivvv~~~--~~~~~---~~-~~~---~~~~v~~~~~~~G~~~sl~~ 78 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREA----------GVDDIVVVTGE--EEIYE---YL-ERY---GIKVVVDPEPGQGPLASLLA 78 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHH----------TESEEEEEEST--HHHHH---HH-TTT---TSEEEE-STSSCSHHHHHHH
T ss_pred eeE-CCccHHHHHHHHhhcc----------CCceEEEecCh--HHHHH---HH-hcc---CceEEEeccccCChHHHHHH
Confidence 555 7767788887777663 12478888765 22222 22 222 56777665 46899999999
Q ss_pred HHHhc-CCCEEEEEeCCCC-CCcchHHHHHHHHHHhc
Q 019818 151 GMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (335)
Q Consensus 151 g~~~a-~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~ 185 (335)
|+... ..+.++++.+|.. ++++.+.++++.+++.+
T Consensus 79 a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~ 115 (160)
T PF12804_consen 79 ALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSP 115 (160)
T ss_dssp HHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTT
T ss_pred HHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccC
Confidence 99998 8899999999995 59999999999997643
No 98
>PLN02248 cellulose synthase-like protein
Probab=94.68 E-value=0.016 Score=60.29 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=44.5
Q ss_pred HcCCCcEEEEEcCCCCC-----hHHHHHHHHHh----cCCCEEEEEeCCCCCC-cchHHHHHHHHHH
Q 019818 127 KYTVDNVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA 183 (335)
Q Consensus 127 ~~~~~~i~vi~~~~~~G-----k~~aln~g~~~----a~~d~v~~~DaD~~~~-~~~l~~l~~~~~~ 183 (335)
+.| .+.++.+++++| |++|+|.-++. +.+++|+.+|+|..+. +..+.+.+=.|.+
T Consensus 583 ~lP--~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 583 RLP--MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ccc--eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 455 788888888776 99999998874 5799999999999874 4588888877754
No 99
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=94.67 E-value=1.5 Score=37.18 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=93.0
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC----CCcEEEEEc------CC
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRIILL------GR 140 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~i~vi~~------~~ 140 (335)
++|+.|..+.|..+++.+.. ..--+|+|+.+...+...+.+.+. ..++ ..++.++.. +.
T Consensus 23 llpv~g~~pli~~~l~~l~~----------~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVN----------SGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDW 91 (200)
T ss_pred eeEECCeeeeHHHHHHHHHH----------CCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCc
Confidence 77887765677777777765 224678887765443333332211 0011 113555542 33
Q ss_pred CCChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhh
Q 019818 141 NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL 217 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 217 (335)
..|-+.|+..|..... .+.++++.+|. +.+..+.++++...+... .+.+...
T Consensus 92 ~~Gta~al~~a~~~i~~~~~~~~lv~~gD~-v~~~~~~~~l~~~~~~~~---------------------~~t~~~~--- 146 (200)
T cd02508 92 YRGTADAIYQNLDYIERSDPEYVLILSGDH-IYNMDYREMLDFHIESGA---------------------DITVVYK--- 146 (200)
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEecCCE-EEecCHHHHHHHHHHcCC---------------------CEEEEEh---
Confidence 5788999999988763 47888999998 455678888887654321 2222111
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccccchHHHHHHhHHcCCCEEEee
Q 019818 218 EEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
..+|..+|+++++.++..... .....+..|+...+...+ ++...+
T Consensus 147 ---------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~-~v~~~~ 192 (200)
T cd02508 147 ---------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKL-KIYAYE 192 (200)
T ss_pred ---------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccC-cEEEEE
Confidence 466778999999876643321 122234567777777774 555443
No 100
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=94.62 E-value=0.67 Score=42.08 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=71.7
Q ss_pred CceEEEEEec--cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEE-EEECCCCcchHHHHHHHHHHcC----CCcEEEEE
Q 019818 65 EKYISLIIPA--FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVL-IIDDGSSDGTKRVAFDFVRKYT----VDNVRIIL 137 (335)
Q Consensus 65 ~~~vsViip~--~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eii-vvdd~s~d~t~~~~~~~~~~~~----~~~i~vi~ 137 (335)
.++++|-||+ +..+..|.+||.|+++.+.. +.....-|+ .+.|...+.....++++..+++ .+.+.|+.
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~----~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~ 126 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSP----EERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVIS 126 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCH----HHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEe
Confidence 3459999999 44467899999999997664 122233333 3444333334555555544333 22455555
Q ss_pred cCCC-----------CC----------h---HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhc
Q 019818 138 LGRN-----------HG----------K---GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (335)
Q Consensus 138 ~~~~-----------~G----------k---~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~ 185 (335)
.+.. .| | -.|.-.......|+|.+.+.+|....++++.++...+....
T Consensus 127 ~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~ 198 (297)
T PF04666_consen 127 PPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWE 198 (297)
T ss_pred cccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhc
Confidence 5432 11 1 01222223334689999999999999999999999887653
No 101
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=94.62 E-value=0.25 Score=42.81 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=65.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+ ...|..+++++.+. .-.+|+++..... +.+.+....+ ++.++..+...|.+.++..
T Consensus 20 l~~v~g-kpli~~~i~~l~~~----------~i~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g~~~ai~~ 81 (229)
T cd02540 20 LHPLAG-KPMLEHVLDAARAL----------GPDRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLGTGHAVKQ 81 (229)
T ss_pred cceeCC-ccHHHHHHHHHHhC----------CCCeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCCCHHHHHH
Confidence 456544 47777777777651 2346666664222 2233332222 5777777767889999999
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
|+.... .+.++++++|. .+.++.+.++++.+.+.
T Consensus 82 a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~ 118 (229)
T cd02540 82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA 118 (229)
T ss_pred HHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 998875 68999999999 46888999999887653
No 102
>PLN02917 CMP-KDO synthetase
Probab=94.53 E-value=0.58 Score=42.55 Aligned_cols=52 Identities=8% Similarity=0.219 Sum_probs=36.6
Q ss_pred cEEEEEcC--CCCChHHHHHHHHHhcC--CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 132 NVRIILLG--RNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 132 ~i~vi~~~--~~~Gk~~aln~g~~~a~--~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
++.++..+ ...|-+.+ ..|++... .|+++++++|.. ++++.+.++++.+.++
T Consensus 108 ~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~ 164 (293)
T PLN02917 108 GADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 164 (293)
T ss_pred CCEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc
Confidence 35555432 23454444 56776664 589999999997 6999999999988654
No 103
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=94.15 E-value=0.49 Score=40.84 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=61.7
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcC--CC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLG--RN 141 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~--~~ 141 (335)
|.|-||-|+|.......+ |..+.+.+.. -+++.-|||+|+. ++.+.+++++. ++.+.+.. .+
T Consensus 1 p~i~vVTPTy~R~~Q~~~-LtRLa~TL~l------Vp~l~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~~ 66 (223)
T cd00218 1 PTIYVVTPTYARPVQKAE-LTRLAHTLRL------VPPLHWIVVEDSEEKTPLVAELLRRS-------GLMYTHLNAKTP 66 (223)
T ss_pred CeEEEECCCCccchhhHH-HHHHHHHHhc------CCceEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeccCCC
Confidence 348899999999766554 4566666654 3389999999986 33344444443 34444432 11
Q ss_pred --------CChHHHHHHHHHhcC-------CCEEEEEeCCCCCCcchHHH
Q 019818 142 --------HGKGEAIRKGMLHSR-------GELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 142 --------~Gk~~aln~g~~~a~-------~d~v~~~DaD~~~~~~~l~~ 176 (335)
.| ...+|.|+++.+ .-+|.|-|+|...+-+..++
T Consensus 67 ~~~~~~~~rg-~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~e 115 (223)
T cd00218 67 SDPTWLKPRG-VEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEE 115 (223)
T ss_pred CCcccCCccc-HHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHH
Confidence 22 356888888763 24677778888888776666
No 104
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=93.96 E-value=0.47 Score=40.75 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=60.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|. ++...+..+++.+.. ....-+|+|+.+.... +.............+.++.. ..|...++..
T Consensus 22 l~~i-~Gkpll~~~i~~l~~---------~~~~~~ivVv~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~ 86 (218)
T cd02516 22 FLEL-GGKPVLEHTLEAFLA---------HPAIDEIVVVVPPDDI---DLAKELAKYGLSKVVKIVEG--GATRQDSVLN 86 (218)
T ss_pred eeEE-CCeEHHHHHHHHHhc---------CCCCCEEEEEeChhHH---HHHHHHHhcccCCCeEEECC--chHHHHHHHH
Confidence 4444 455667777776654 1113467777653322 22222211111113444432 2467888999
Q ss_pred HHHhc---CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GMLHS---RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a---~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
|++.. ..++++++++|.. ++++.+.++++.+.+.
T Consensus 87 al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (218)
T cd02516 87 GLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY 124 (218)
T ss_pred HHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC
Confidence 99986 4689999999986 6999999999988553
No 105
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.93 E-value=0.52 Score=39.10 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=59.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~g~~~ 154 (335)
++...++.+++.+... ...+|+|+.+.... +. ....... ++.++..+ ...|...++..|++.
T Consensus 24 ~g~~li~~~i~~l~~~----------~~~~i~vv~~~~~~---~~-~~~~~~~---~~~~~~~~~~~~G~~~~i~~al~~ 86 (186)
T cd04182 24 DGKPLLRHALDAALAA----------GLSRVIVVLGAEAD---AV-RAALAGL---PVVVVINPDWEEGMSSSLAAGLEA 86 (186)
T ss_pred CCeeHHHHHHHHHHhC----------CCCcEEEECCCcHH---HH-HHHhcCC---CeEEEeCCChhhCHHHHHHHHHHh
Confidence 4556677776766541 12467777543222 11 1221221 35555543 336888999999998
Q ss_pred cC--CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 155 SR--GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 155 a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
+. .|+++++.+|. .++++.+.++++.+.+
T Consensus 87 ~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 87 LPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred ccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 86 79999999999 4688999999988764
No 106
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=93.89 E-value=0.071 Score=48.24 Aligned_cols=100 Identities=18% Similarity=0.317 Sum_probs=66.1
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NH 142 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~~ 142 (335)
..+.||||+-+.. |...+++....+. ++++|||-|+...+..++.+.+ +..+..... -.
T Consensus 8 ~~~divi~~~~~~--l~~~~~~wr~~~~---------~~hliiv~d~~~~~~~~~p~g~-------~~~~y~~~di~~~l 69 (348)
T PF03214_consen 8 DEVDIVIPALRPN--LTDFLEEWRPFFS---------PYHLIIVQDPDPNEEIKVPEGF-------DYEVYNRNDIERVL 69 (348)
T ss_pred CcccEEeeccccc--HHHHHHHHHHhhc---------ceeEEEEeCCCccccccCCccc-------ceeeecHhhHHhhc
Confidence 3499999998753 4567777766433 6999999997665554443332 223322211 01
Q ss_pred C--------hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 143 G--------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 143 G--------k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
| -.+.+|.|+-.++.+|++++|.|+.+..|..-..++.+..
T Consensus 70 g~~~~i~~~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~q 118 (348)
T PF03214_consen 70 GAKTLIPFKGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQ 118 (348)
T ss_pred CCcccccccccchhhhHhhhcccceEEEEccccccccCCccceehhhhc
Confidence 1 2345889999999999999999999887766555555543
No 107
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=93.55 E-value=0.15 Score=45.29 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=57.6
Q ss_pred cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhHHHHHH
Q 019818 155 SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMK 234 (335)
Q Consensus 155 a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 234 (335)
...+|.+++|+|+.+..+.|.+++..+.... ++.+|.+........ ...+
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~----------------------~~yiG~~~~~~~~~~-----~~~~--- 134 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYDPSE----------------------PIYIGRPSGDRPIEI-----IHRF--- 134 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS-TTS------------------------EEE-EE-------------------
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCCCcc----------------------CEEeeeeccCcccee-----eccc---
Confidence 4569999999999999999999998875432 577787753211000 0000
Q ss_pred HHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhh---hhhh------ccccchHHHHHHhHH-cCCCEEEeeeEEEecCC
Q 019818 235 GFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFT---NIRL------KRWCFDVELVYLCKR-FGIPIIEISVNWSEIPG 304 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~---~~~~------~~~~~D~el~~r~~~-~G~~i~~~p~~~~~~~~ 304 (335)
........+..+...++| .+++|.+++++.+ .... ....+|+.+..-+.. .|.++...+..+.+.+.
T Consensus 135 --~~~~~~~~~~~f~~GGaG-~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 135 --NPNKSKDSGFWFATGGAG-YVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp -------------EE-GGG--EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred --cccccCcCceEeeCCCee-HHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 000001111222334444 4899999999822 1111 234679999999988 99888888766555433
No 108
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=93.50 E-value=0.094 Score=37.51 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=31.3
Q ss_pred ccCCCceeeeeHHHHHHhhhh-hhhccc-cchHHHHHHhHHcCCCEEEee
Q 019818 249 RDTQCGFKMFTRAAARKLFTN-IRLKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 249 ~~~~~g~~~~~r~~l~~i~~~-~~~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
....+|..+++|+.++++.+. ....+| .||.||..|+..+|.++..++
T Consensus 17 ~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 17 PNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp TT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SS
T ss_pred CCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecC
Confidence 335677789999999999433 233555 379999999999999988765
No 109
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=93.20 E-value=1.1 Score=37.53 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=61.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~g~~~ 154 (335)
++...+..+++.+++ . .--+|+||.+.. ++..+.+.+...... ++.++..+. ..|...++..|++.
T Consensus 24 ~g~~ll~~~i~~~~~---------~-~~~~i~vv~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~si~~gl~~ 90 (190)
T TIGR03202 24 GETTLGSASLKTALS---------S-RLSKVIVVIGEK-YAHLSWLDPYLLADE--RIMLVCCRDACEGQAHSLKCGLRK 90 (190)
T ss_pred CCccHHHHHHHHHHh---------C-CCCcEEEEeCCc-cchhhhhhHhhhcCC--CeEEEECCChhhhHHHHHHHHHHH
Confidence 556667776666544 2 234777777543 222222222111112 455554443 45888899999997
Q ss_pred c---CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 155 S---RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 155 a---~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
+ ..|+++++++|.. ++++.+.+|++.+.+.
T Consensus 91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 91 AEAMGADAVVILLADQPFLTADVINALLALAKRR 124 (190)
T ss_pred hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhC
Confidence 6 3699999999996 5889999999887654
No 110
>PLN02458 transferase, transferring glycosyl groups
Probab=93.08 E-value=1.5 Score=39.99 Aligned_cols=102 Identities=11% Similarity=0.146 Sum_probs=61.6
Q ss_pred CCceEEEEEeccCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--C
Q 019818 64 AEKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--R 140 (335)
Q Consensus 64 ~~~~vsViip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~ 140 (335)
..+.|-||-|+|.. ... ..-|..+.+.+.. -.+++.-|||+|+. .|.++ .++.++. ++.+.+.. .
T Consensus 110 ~~rlIivVTPTY~rR~~Q-~a~LTRLahTL~l-----Vp~pL~WIVVEd~~--~t~~v-a~lLrrs---Gl~y~HL~~k~ 177 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQ-GVLLRRLANTLRL-----VPPPLLWIVVEGQS--DSEEV-SEMLRKT---GIMYRHLVFKE 177 (346)
T ss_pred CCceEEEECCCCCCcchh-HHHHHHHHHHHhc-----CCCCceEEEEeCCC--CCHHH-HHHHHHc---CCceEEeccCC
Confidence 45679999999984 333 3345666666653 34468888888865 33332 2333333 34444332 2
Q ss_pred CC----C-hHHHHHHHHHhcC----CCEEEEEeCCCCCCcchHHHH
Q 019818 141 NH----G-KGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKL 177 (335)
Q Consensus 141 ~~----G-k~~aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l 177 (335)
+. + ....+|.|+++.+ .-+|.|-|+|...+-+..++|
T Consensus 178 ~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 178 NFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred CCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 32 2 2456899998874 366777788888776666553
No 111
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=92.60 E-value=2 Score=36.85 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
++...+..+++.+.. ....-+|+|+.+... .+.+.+...... .+.++.. ..+...++..|+...
T Consensus 25 ~gkpll~~~l~~l~~---------~~~~~~ivVv~~~~~---~~~~~~~~~~~~--~~~~~~~--~~~~~~sl~~~l~~~ 88 (217)
T TIGR00453 25 GGRPLLEHTLDAFLA---------HPAIDEVVVVVSPED---QEFFQKYLVARA--VPKIVAG--GDTRQDSVRNGLKAL 88 (217)
T ss_pred CCeEHHHHHHHHHhc---------CCCCCEEEEEEChHH---HHHHHHHhhcCC--cEEEeCC--CchHHHHHHHHHHhC
Confidence 455667777776654 222457777765321 122222211111 2333322 124667888999887
Q ss_pred -CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 156 -~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
..|+++++++|.. ++++.+.++++.+.++
T Consensus 89 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 89 KDAEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred CCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 6799999999995 7999999999988653
No 112
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=92.58 E-value=2 Score=35.24 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=66.7
Q ss_pred cCCCC-ChHHHHHHHHHHHHHhhh--------cCCCCceEEEEEECCCC---cchHHHHHHHHH-------H--------
Q 019818 75 FNEEH-RLPGALDETLNYLQQRAA--------KDKSFTYEVLIIDDGSS---DGTKRVAFDFVR-------K-------- 127 (335)
Q Consensus 75 ~ne~~-~l~~~l~sl~~~~~~~~~--------~~~~~~~eiivvdd~s~---d~t~~~~~~~~~-------~-------- 127 (335)
|||++ .+.+||.++.+.+..+.. +....+.-|.||.||-. ..|.+.+..+.- .
T Consensus 2 YNEd~~ll~rTL~gv~~Ni~~l~~r~~s~~wG~d~WkkiVVcIv~DGr~ki~~~tl~~L~~lGvyq~gi~k~~v~~k~v~ 81 (163)
T PF01644_consen 2 YNEDEILLARTLHGVMKNIAHLCSRKRSKTWGKDAWKKIVVCIVSDGRAKINPRTLDLLAALGVYQEGIAKNQVNGKPVT 81 (163)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCcCCcCCCCCCcEEEEEEEecCcccCCHHHHHHHHHcCCCcchhhhhhcCCCcce
Confidence 78854 467788888877665541 11234566777888855 345555544321 0
Q ss_pred ----------------------cCCCcEEEEE--cCCCCChHHHHHHHHHh----cCCCEEEEEeCCCCCCcchHHHHHH
Q 019818 128 ----------------------YTVDNVRIIL--LGRNHGKGEAIRKGMLH----SRGELLLMLDADGATKVTDLEKLES 179 (335)
Q Consensus 128 ----------------------~~~~~i~vi~--~~~~~Gk~~aln~g~~~----a~~d~v~~~DaD~~~~~~~l~~l~~ 179 (335)
.....+.++. -++|.||-..-..-+.. .+-++.+++|+-+.+.++.|-+|+.
T Consensus 82 aHifEyTtq~~i~~~~~~~~~~~~~~PvQ~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwk 161 (163)
T PF01644_consen 82 AHIFEYTTQLSIDSDLKFKGPEKNIVPVQIIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWK 161 (163)
T ss_pred eEEEEecccceecccccccccccCCCCEEEEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHh
Confidence 0011343322 23467776665554443 4679999999999999999999987
Q ss_pred HH
Q 019818 180 QI 181 (335)
Q Consensus 180 ~~ 181 (335)
.|
T Consensus 162 af 163 (163)
T PF01644_consen 162 AF 163 (163)
T ss_pred hC
Confidence 64
No 113
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=92.30 E-value=1.7 Score=36.77 Aligned_cols=94 Identities=10% Similarity=0.183 Sum_probs=68.2
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHHHHH
Q 019818 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGML 153 (335)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~g~~ 153 (335)
++....+..+++..++ ..--++|+|.-.- ..+..+..... .+++++.+++ .+|.+..+..|++
T Consensus 28 ~~g~plv~~~~~~a~~----------a~~~~vivV~g~~---~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~~ 91 (199)
T COG2068 28 LDGKPLVRASAETALS----------AGLDRVIVVTGHR---VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGLR 91 (199)
T ss_pred cCCCcHHHHHHHHHHh----------cCCCeEEEEeCcc---hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHHH
Confidence 4555666766666655 2234788887543 33333333222 2688888876 6899999999999
Q ss_pred hcCCC--EEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 154 HSRGE--LLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a~~d--~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.+.++ .++++-+|.. +.++.+.++++.+...
T Consensus 92 a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 92 AADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred hcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 99865 9999999997 8999999999999654
No 114
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=92.25 E-value=1.6 Score=37.21 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=61.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..+..+++++.+. . --+|+++.+...+...+.+.+... ....+.++..+...|.+.++..
T Consensus 23 ll~v~g~-pli~~~l~~l~~~---------g-~~~i~vv~~~~~~~i~~~~~~~~~--~~~~i~~~~~~~~~g~~~al~~ 89 (217)
T cd04181 23 LLPIAGK-PILEYIIERLARA---------G-IDEIILVVGYLGEQIEEYFGDGSK--FGVNIEYVVQEEPLGTAGAVRN 89 (217)
T ss_pred ccEECCe-eHHHHHHHHHHHC---------C-CCEEEEEeccCHHHHHHHHcChhh--cCceEEEEeCCCCCccHHHHHH
Confidence 4455454 7777777777652 1 356777766443333332222110 1124666666556888999999
Q ss_pred HHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
++.....+.++++++|.....+ +.++++...+
T Consensus 90 ~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~ 121 (217)
T cd04181 90 AEDFLGDDDFLVVNGDVLTDLD-LSELLRFHRE 121 (217)
T ss_pred hhhhcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 9988877889999999987666 5555655443
No 115
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=2.8 Score=37.87 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=63.2
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
.|.|-||-|+|+......+ |..+.+.+.+ -++..-|||.||+ +..+..++++..-. ..+ +..+.+.
T Consensus 86 ~~~iivVTPTY~R~~q~~~-LtRlanTL~~------V~nLhWIVVEd~~~~~p~v~~~L~rtgl~----yth-l~~~t~~ 153 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAE-LTRLANTLRL------VPNLHWIVVEDGEGTTPEVSGILRRTGLP----YTH-LVHKTPM 153 (330)
T ss_pred CccEEEEcccccchhHHHH-HHHHHHHHhh------cCCeeEEEEecCCCCCHHHHHHHHHcCCc----eEE-EeccCCC
Confidence 6889999999999855443 5666666654 3389999999984 33445555544222 222 3333344
Q ss_pred C-h----HHHHHHHHHhcC--------C-CEEEEEeCCCCCCcchHHH
Q 019818 143 G-K----GEAIRKGMLHSR--------G-ELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 143 G-k----~~aln~g~~~a~--------~-d~v~~~DaD~~~~~~~l~~ 176 (335)
| + ...+|.|++..+ . -+|.|-|+|...+-+..++
T Consensus 154 ~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e 201 (330)
T KOG1476|consen 154 GYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE 201 (330)
T ss_pred CCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH
Confidence 4 3 457888887754 2 4556668888777666655
No 116
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=91.97 E-value=3.9 Score=38.04 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=73.8
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH--H----------------HHHHHHHH--
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK--R----------------VAFDFVRK-- 127 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~--~----------------~~~~~~~~-- 127 (335)
|=|.|+.|... ....||.++++... .+.++.|=|++-...++.. . ........
T Consensus 2 IFvsiasyRD~-~c~~Tl~~~~~~A~------~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 74 (343)
T PF11397_consen 2 IFVSIASYRDP-ECAPTLKDLFARAT------NPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSA 74 (343)
T ss_pred EEEEEeeecCc-hHHHHHHHHHHhcC------CCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccc
Confidence 66788898885 48888888887543 2345555555543222221 0 00111110
Q ss_pred ----------cCCCcEEEEEcC--CCCChHHHHHHHHHhcCC-CEEEEEeCCCCCCcchHHHHHHHHHHhc
Q 019818 128 ----------YTVDNVRIILLG--RNHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVG 185 (335)
Q Consensus 128 ----------~~~~~i~vi~~~--~~~Gk~~aln~g~~~a~~-d~v~~~DaD~~~~~~~l~~l~~~~~~~~ 185 (335)
....+|++++.+ +.+|...|+..+.+.-+| +|++.+|+.+...++|=..|++.++.-+
T Consensus 75 ~~~~~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~ 145 (343)
T PF11397_consen 75 CAEWPDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLR 145 (343)
T ss_pred ccccccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcC
Confidence 112367777665 468888899988888765 9999999999999999888888887764
No 117
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=91.81 E-value=6.8 Score=33.98 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC--CcEEEEEcCCCCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGRNHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~i~vi~~~~~~Gk~~aln~g~~ 153 (335)
++...|..+++.+.. ...--+|+|+.+. +....+++...++.. .++.++. ...+...++..|+.
T Consensus 28 ~gkpll~~~i~~~~~---------~~~~~~ivVv~~~---~~~~~~~~~~~~~~~~~~~~~~v~--~g~~r~~sv~~gl~ 93 (230)
T PRK13385 28 VGEPIFIHALRPFLA---------DNRCSKIIIVTQA---QERKHVQDLMKQLNVADQRVEVVK--GGTERQESVAAGLD 93 (230)
T ss_pred CCeEHHHHHHHHHHc---------CCCCCEEEEEeCh---hhHHHHHHHHHhcCcCCCceEEcC--CCchHHHHHHHHHH
Confidence 556677777777654 2223467776643 222333333333321 1344443 22356688888888
Q ss_pred hcC-CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 154 HSR-GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a~-~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
... .+++++.|+|.. ++++.+.++++.+.+.
T Consensus 94 ~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 94 RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 763 578999999996 5999999999988653
No 118
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=91.72 E-value=3.4 Score=36.21 Aligned_cols=92 Identities=7% Similarity=0.132 Sum_probs=53.5
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~Gk~~aln~ 150 (335)
++. ++...|..+++.+.. .. --+|+|+.|. +. +.+..+.+ ++.++.. +...|-......
T Consensus 19 ~~l-~GkPli~~~le~~~~---------~~-~d~VvVvt~~--~~----i~~~~~~~---g~~~v~~~~~~~~Gt~r~~~ 78 (238)
T TIGR00466 19 EDI-FGKPMIVHVAENANE---------SG-ADRCIVATDD--ES----VAQTCQKF---GIEVCMTSKHHNSGTERLAE 78 (238)
T ss_pred ccc-CCcCHHHHHHHHHHh---------CC-CCeEEEEeCH--HH----HHHHHHHc---CCEEEEeCCCCCChhHHHHH
Confidence 444 456777777777654 22 3567777652 22 23333333 3444432 222232222233
Q ss_pred HHHh---cCCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 151 GMLH---SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~---a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
+++. ...|+|+++|+|.. ++++.+.++++.+.+
T Consensus 79 ~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~ 115 (238)
T TIGR00466 79 VVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLAT 115 (238)
T ss_pred HHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhc
Confidence 3332 24689999999997 799999999998854
No 119
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=91.70 E-value=1.1 Score=37.38 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=62.2
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~ 150 (335)
+|. +....+..+++.+.+ .. .-+|+|+.+...+ +..+.+...+ ++.++..+. ..|...++..
T Consensus 20 l~~-~g~pll~~~i~~l~~---------~~-~~~iivv~~~~~~---~~~~~~~~~~---~v~~v~~~~~~~g~~~si~~ 82 (188)
T TIGR03310 20 LPY-KGKTILEHVVDNALR---------LF-FDEVILVLGHEAD---ELVALLANHS---NITLVHNPQYAEGQSSSIKL 82 (188)
T ss_pred ccc-CCeeHHHHHHHHHHH---------cC-CCcEEEEeCCcHH---HHHHHhccCC---CeEEEECcChhcCHHHHHHH
Confidence 344 455667777766655 21 3467776553322 2233332222 466666543 3578888999
Q ss_pred HHH-hcCCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GML-HSRGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~-~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
|++ ....+.++++++|.. ++++.+.++++.+.+.
T Consensus 83 ~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 118 (188)
T TIGR03310 83 GLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred HhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence 988 455789999999995 6899999999887654
No 120
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.08 E-value=9.7 Score=37.15 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=60.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|..+. ..|..+|+++... ..-+++++.....+...+. +....+ .+.++..+...|.+.++..
T Consensus 26 llpi~gk-pli~~~l~~l~~~----------g~~~iivvv~~~~~~i~~~---~~~~~~--~~~~~~~~~~~Gt~~si~~ 89 (482)
T PRK14352 26 LHTLAGR-SMLGHVLHAAAGL----------APQHLVVVVGHDRERVAPA---VAELAP--EVDIAVQDEQPGTGHAVQC 89 (482)
T ss_pred eceeCCc-cHHHHHHHHHHhc----------CCCcEEEEECCCHHHHHHH---hhccCC--ccEEEeCCCCCCcHHHHHH
Confidence 5566553 4667777766541 1236666654332222222 211112 3555555556788889999
Q ss_pred HHHhcC---CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR---GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~---~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
|+.... .+.++++++|. .+.++.+.++++...+.
T Consensus 90 al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~ 127 (482)
T PRK14352 90 ALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE 127 (482)
T ss_pred HHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 988764 37899999998 47888999999877553
No 121
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=91.04 E-value=1.2 Score=36.89 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=60.5
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~ 150 (335)
+|. +....|..+++.+... .-+|+|+.+...+. . ... ++.++..+ ...|...++..
T Consensus 21 l~~-~g~~ll~~~i~~l~~~-----------~~~iivv~~~~~~~----~----~~~---~~~~v~~~~~~~G~~~si~~ 77 (181)
T cd02503 21 LEL-GGKPLLEHVLERLKPL-----------VDEVVISANRDQER----Y----ALL---GVPVIPDEPPGKGPLAGILA 77 (181)
T ss_pred eEE-CCEEHHHHHHHHHHhh-----------cCEEEEECCCChHH----H----hhc---CCcEeeCCCCCCCCHHHHHH
Confidence 344 4566777777766542 24677776533222 1 111 45666554 35788899999
Q ss_pred HHHhcCCCEEEEEeCCCC-CCcchHHHHHHHH
Q 019818 151 GMLHSRGELLLMLDADGA-TKVTDLEKLESQI 181 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~ 181 (335)
|++....+.++++.+|.. ++++.+..+++.+
T Consensus 78 ~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 78 ALRAAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred HHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 999988899999999996 6899999998877
No 122
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=90.54 E-value=13 Score=36.58 Aligned_cols=112 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC-CcEEEEEcCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLGRNH 142 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~i~vi~~~~~~ 142 (335)
..++|.|++=+|-.+ .++++++.+.+ .+..++++|-.+. ++..+.+++..++.+. .++.|+.. +|+
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~---------~p~~~Dl~ITt~~--~~~~~~i~~~l~~~~~~~~~~v~vv-~Nr 329 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLAN---------IPFPYDLFITTDS--EEKKEEIEEILAKRPGFKNAEVRVV-ENR 329 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHh---------CCCCeEEEEECCc--hhhHHHHHHHHHhccCCCceEEEEe-CCC
Confidence 457899999999874 45566665544 5667898887542 2334455555444442 25666665 578
Q ss_pred ChH-HHHHHHHH----hcCCCEEEEEeCCCCCC--------------------cchHHHHHHHHHHhcccc
Q 019818 143 GKG-EAIRKGML----HSRGELLLMLDADGATK--------------------VTDLEKLESQIHAVGRKE 188 (335)
Q Consensus 143 Gk~-~aln~g~~----~a~~d~v~~~DaD~~~~--------------------~~~l~~l~~~~~~~~~~~ 188 (335)
|.- +++-.++. ..+.|+|+.+..--... ++.+.++++.|+++++.|
T Consensus 330 GRDi~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lG 400 (498)
T PF05045_consen 330 GRDILPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLG 400 (498)
T ss_pred CccHHHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCce
Confidence 833 33332332 24679999987654443 233555666666666554
No 123
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=90.25 E-value=0.91 Score=41.59 Aligned_cols=112 Identities=10% Similarity=0.133 Sum_probs=78.3
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC------C--CcEE
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT------V--DNVR 134 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~--~~i~ 134 (335)
..+|-+.||+-+.|....+.++++.++..-. ....+-|||--|++..++.+.++.+..... + ..|.
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yrP------saekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~ 137 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYRP------SAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEIS 137 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhCc------chhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccc
Confidence 4456789999999999999999999988421 233577888888888888888877655322 0 0122
Q ss_pred EEEcCC-CC-------ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 135 IILLGR-NH-------GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 135 vi~~~~-~~-------Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
|-..+. .. ...-|+|..+..-+.+.++++-+|....|++...+...
T Consensus 138 v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t 191 (411)
T KOG1413|consen 138 VPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNT 191 (411)
T ss_pred cCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHH
Confidence 211111 11 13457777777778899999999999999988776654
No 124
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=90.25 E-value=0.73 Score=40.34 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=66.7
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEE-EEEECCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCChHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEV-LIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~ei-ivvdd~s~d~t~~~~~~~~~~~~--~~~i~vi~~~~~~Gk~~a 147 (335)
++|..|..+.|..+|+.+.+ ...-++ +|+.....+. +.+...... ..++.++..+...|-+.|
T Consensus 24 ll~i~g~~pli~~~l~~l~~----------~g~~~ii~V~~~~~~~~----i~~~~~~~~~~~~~i~~i~~~~~~Gta~a 89 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLAN----------AGIKEIIVVVNGYKEEQ----IEEHLGSGYKFGVKIEYIVQPEPLGTAGA 89 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHH----------TTCSEEEEEEETTTHHH----HHHHHTTSGGGTEEEEEEEESSSSCHHHH
T ss_pred cceecCCCcchhhhhhhhcc----------cCCceEEEEEeeccccc----ccccccccccccccceeeecccccchhHH
Confidence 56676765667777777665 224564 4444332222 222222222 124788888888899999
Q ss_pred HHHHHHhcCCCE----EEEEeCCCCCCcchHHHHHHHHHHhcc
Q 019818 148 IRKGMLHSRGEL----LLMLDADGATKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 148 ln~g~~~a~~d~----v~~~DaD~~~~~~~l~~l~~~~~~~~~ 186 (335)
+..+......+. ++++.+|...+. .+..+++...+...
T Consensus 90 l~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~ 131 (248)
T PF00483_consen 90 LLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA 131 (248)
T ss_dssp HHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred HHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence 999999988765 999999998877 67788877766543
No 125
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=90.08 E-value=2.8 Score=35.73 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=60.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc-CCCcEEEEEcCCCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY-TVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~i~vi~~~~~~Gk~~aln 149 (335)
++|.-+. ..|...++.+.+ .. --+|+|+.+...+...+. +.... ....+.+.......|.+.++.
T Consensus 23 ll~i~g~-pli~~~l~~l~~---------~g-~~~v~vv~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~G~~~~l~ 88 (223)
T cd06915 23 LAPVAGR-PFLEYLLEYLAR---------QG-ISRIVLSVGYLAEQIEEY---FGDGYRGGIRIYYVIEPEPLGTGGAIK 88 (223)
T ss_pred ccEECCc-chHHHHHHHHHH---------CC-CCEEEEEcccCHHHHHHH---HcCccccCceEEEEECCCCCcchHHHH
Confidence 4555453 667777777655 21 236777765333322222 22111 111344445455688888999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
.|++....+.++++++|...+. .+.+++..+.+
T Consensus 89 ~a~~~~~~~~~lv~~~D~~~~~-~~~~~l~~~~~ 121 (223)
T cd06915 89 NALPKLPEDQFLVLNGDTYFDV-DLLALLAALRA 121 (223)
T ss_pred HHHhhcCCCCEEEEECCcccCC-CHHHHHHHHHh
Confidence 9999887788999999997754 57777777654
No 126
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=90.07 E-value=5.1 Score=35.97 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=59.5
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHH-cCCCcEEEEEcCCCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i~vi~~~~~~Gk~~aln 149 (335)
.+|..++...|..+++++... ...-+|+|+.+.. -.+.+++.... .+ ++.++..+...|-+.|+.
T Consensus 26 ll~l~g~~~li~~~l~~l~~~---------~~~~~i~vvt~~~---~~~~v~~~l~~~~~--~~~ii~ep~~~gTa~ai~ 91 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGL---------VPPDRILVVTNEE---YRFLVREQLPEGLP--EENIILEPEGRNTAPAIA 91 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcC---------CCCCcEEEEechH---HHHHHHHHHhhcCC--CceEEECCCCCCcHHHHH
Confidence 577777677777777776541 1234777777531 22233333222 23 577777777788888888
Q ss_pred HHHHhcC----CCEEEEEeCCCCCCc-chHHHHHH
Q 019818 150 KGMLHSR----GELLLMLDADGATKV-TDLEKLES 179 (335)
Q Consensus 150 ~g~~~a~----~d~v~~~DaD~~~~~-~~l~~l~~ 179 (335)
.+..... .+.++++.+|..... +.+.++++
T Consensus 92 ~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~ 126 (274)
T cd02509 92 LAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVK 126 (274)
T ss_pred HHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHH
Confidence 8877653 479999999987753 44444443
No 127
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=89.97 E-value=3.4 Score=35.87 Aligned_cols=98 Identities=10% Similarity=0.113 Sum_probs=57.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
+.|. ++...+..+++.+.+. ...-+|+|+.+.... . +.+.+..... ++.++..+...+.+ ....
T Consensus 18 ll~l-~Gkpli~~~i~~l~~~---------~~~~~ivVv~~~~~~-~-~~i~~~~~~~---~v~~v~~~~~~~l~-~~~~ 81 (233)
T cd02518 18 LKPL-GGKPLLEHLLDRLKRS---------KLIDEIVIATSTNEE-D-DPLEALAKKL---GVKVFRGSEEDVLG-RYYQ 81 (233)
T ss_pred cccc-CCccHHHHHHHHHHhC---------CCCCeEEEECCCCcc-c-HHHHHHHHHc---CCeEEECCchhHHH-HHHH
Confidence 4444 4556777777777551 112467776654431 1 1222222222 46677665432222 2233
Q ss_pred HHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
+++....|+++++++|.. ++++.++++++.+.+.
T Consensus 82 ~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 82 AAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 444456799999999996 6999999999988654
No 128
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=89.63 E-value=2.9 Score=35.15 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhcC--CCEEEEEeCCCC-CCcchHHHHHHHHH
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIH 182 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a~--~d~v~~~DaD~~-~~~~~l~~l~~~~~ 182 (335)
++.++..+. .|...++..|++... ++.++++-+|.. +.++.+.++++.+.
T Consensus 65 ~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 65 GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 466776654 489999999998754 468999999996 69999999998774
No 129
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=89.52 E-value=0.38 Score=43.80 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=52.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-C---
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-N--- 141 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~--- 141 (335)
..+.||||+-.+ .++|++....+. ++++|+|-|+..-.+..+-+. ....+...++ +
T Consensus 11 ~evdIVi~TI~~----~~fL~~~r~~l~---------~~h~iiV~d~D~~~~~~~~~G-------~d~~vy~r~d~~~~L 70 (346)
T PLN03180 11 DELDIVIPTIRN----LDFLEMWRPFFQ---------PYHLIIVQDGDPSKEIKVPEG-------FDYELYNRNDINRIL 70 (346)
T ss_pred CcceEEEeccCc----hhHHHHHHHhcC---------cccEEEEecCCcccceeccCC-------CceeecCHHHHHhhh
Confidence 459999999555 467777777443 567788777433222111110 1122211111 0
Q ss_pred --------CChHHHHHHHHHhcCCCEEEEEeCCCCCCcc
Q 019818 142 --------HGKGEAIRKGMLHSRGELLLMLDADGATKVT 172 (335)
Q Consensus 142 --------~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~ 172 (335)
..-.+.++.|+-.++.+|++.+|.|+.+..+
T Consensus 71 g~~~~~Ip~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 71 GPKASCISFKDSACRCFGYLVSKKKYIFTIDDDCFVAKD 109 (346)
T ss_pred cccccccccCcccchhhhheeecceEEEEECCCCCCCCC
Confidence 1122357888888889999999999998777
No 130
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=89.34 E-value=3 Score=35.84 Aligned_cols=97 Identities=14% Similarity=0.004 Sum_probs=58.8
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln 149 (335)
++|+-+. ..|...++++.+. .--+|+++.....+...+.+.+ +.....+.+.... +..|-+.++.
T Consensus 24 llpi~g~-~li~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~g~~~~l~ 89 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAA----------GIRRIVVNTHHLADQIEAHLGD---SRFGLRITISDEPDELLETGGGIK 89 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHC----------CCCEEEEEccCCHHHHHHHHhc---ccCCceEEEecCCCcccccHHHHH
Confidence 5666555 7777777777652 2346666655433333333322 1221234444433 3468888999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~ 182 (335)
.++.....+.++++.+|...+.+.. +++....
T Consensus 90 ~~~~~~~~~~~lv~~~D~i~~~~~~-~~~~~~~ 121 (221)
T cd06422 90 KALPLLGDEPFLVVNGDILWDGDLA-PLLLLHA 121 (221)
T ss_pred HHHHhcCCCCEEEEeCCeeeCCCHH-HHHHHHH
Confidence 9999876688999999998877644 4555443
No 131
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=89.16 E-value=4.5 Score=36.02 Aligned_cols=186 Identities=11% Similarity=0.054 Sum_probs=105.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~Gk~~al 148 (335)
++|+|+- +.|.-+++.+.. ..--+|+||.. ++.....+++.-.. -+.++++...++..|.+.|+
T Consensus 25 LlpV~~K-Pmi~y~l~~L~~----------aGI~dI~II~~---~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av 90 (286)
T COG1209 25 LLPVYDK-PMIYYPLETLML----------AGIRDILIVVG---PEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAV 90 (286)
T ss_pred cceecCc-chhHhHHHHHHH----------cCCceEEEEec---CCchhhhhhhhcCccccCcceEEEecCCCCcHHHHH
Confidence 7899886 567777777765 33457777754 22222233332220 12379999999999999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
-.|-.....|=++++=+|..+.. -+.+++..+.+....+.+....+.+.+.+ .+|-=..
T Consensus 91 ~~a~~fv~~~~f~l~LGDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rf------GV~e~d~-------------- 149 (286)
T COG1209 91 LIAEDFVGDDDFVLYLGDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRY------GVVEFDE-------------- 149 (286)
T ss_pred HHHHhhcCCCceEEEecCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccc------eEEEEcC--------------
Confidence 99999998544555556666666 88888988876444433222222222111 1110000
Q ss_pred HHHHHHHHHHHHHHHh---CCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCEEEeeeE
Q 019818 229 RNFLMKGFHLVVILTA---GPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPIIEISVN 298 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i~~~p~~ 298 (335)
.. ...+..- ..+-.....|..+|+.++++.+-.-..+ -+-.|=.|..-....+|..+.++...
T Consensus 150 -----~~--~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~ 216 (286)
T COG1209 150 -----DG--KVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIR 216 (286)
T ss_pred -----CC--cEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEcc
Confidence 00 0000000 0111124467789999999988211111 12223456778888999999988754
No 132
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=89.15 E-value=2.3 Score=40.94 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=61.7
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+ ...|..+++.+.+. ...+++++.....+. +++....+ ++.++..++..|.+.++..
T Consensus 22 l~~i~g-kpli~~~l~~l~~~----------g~~~iiiv~~~~~~~----i~~~~~~~---~i~~~~~~~~~G~~~ai~~ 83 (451)
T TIGR01173 22 LHPLAG-KPMLEHVIDAARAL----------GPQKIHVVYGHGAEQ----VRKALANR---DVNWVLQAEQLGTGHAVLQ 83 (451)
T ss_pred hceeCC-ccHHHHHHHHHHhC----------CCCeEEEEECCCHHH----HHHHhcCC---CcEEEEcCCCCchHHHHHH
Confidence 555544 46777777776551 134666665432222 23322222 4666666656788888999
Q ss_pred HHHhcC-CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~-~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
++.... .+.++++++|. .++++.+.++++.+.+
T Consensus 84 a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~ 118 (451)
T TIGR01173 84 ALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQ 118 (451)
T ss_pred HHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhh
Confidence 988874 47899999998 5688899998887754
No 133
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=89.15 E-value=2.7 Score=40.70 Aligned_cols=110 Identities=11% Similarity=0.007 Sum_probs=70.0
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRN 141 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~ 141 (335)
+....+|.++-+||.-+.|...+..... -+.--+|+||=|+-..+.. +..+.. ....+++....+|
T Consensus 440 ~~~qgFTlim~TYdR~d~L~k~v~~ys~---------vPsL~kIlVVWNnq~k~PP~es~~~~----~~VPlr~r~qkeN 506 (691)
T KOG1022|consen 440 GHSQGFTLIMLTYDRVDLLKKLVKHYSR---------VPSLKKILVVWNNQGKNPPPESLEPD----IAVPLRFRQQKEN 506 (691)
T ss_pred CcccceeeeeehHHHHHHHHHHHHHHhh---------CCCcceEEEEecCCCCCCChhhcccc----CCccEEEEehhhh
Confidence 4445699999999987666665555543 3334677777664222221 211111 1124555555443
Q ss_pred CChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccc
Q 019818 142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 142 ~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~ 187 (335)
+-.++-.-....+.+.|+.+|+|..++-+.|+---+..++.++.
T Consensus 507 --sLnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~ 550 (691)
T KOG1022|consen 507 --SLNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDR 550 (691)
T ss_pred --hhhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccc
Confidence 33333334445678999999999999999999999999888864
No 134
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=89.14 E-value=2.1 Score=35.96 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=56.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~aln~g~~ 153 (335)
+....+..+++.+... --+|+|+.+.. .+... .. ++.++.... ..|...++..|++
T Consensus 28 ~g~~ll~~~i~~l~~~-----------~~~i~vv~~~~----~~~~~----~~---~~~~v~~~~~~~~g~~~~i~~~l~ 85 (193)
T PRK00317 28 NGKPLIQHVIERLAPQ-----------VDEIVINANRN----LARYA----AF---GLPVIPDSLADFPGPLAGILAGLK 85 (193)
T ss_pred CCEEHHHHHHHHHhhh-----------CCEEEEECCCC----hHHHH----hc---CCcEEeCCCCCCCCCHHHHHHHHH
Confidence 5566777777766521 23677764422 11121 11 344554432 3677788999999
Q ss_pred hcCCCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 154 ~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
....++++++++|. .++++.+..+++.+.+
T Consensus 86 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 86 QARTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred hcCCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 88889999999999 4699999999987754
No 135
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=88.43 E-value=3 Score=37.32 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=68.0
Q ss_pred EEEEE-eccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-------
Q 019818 68 ISLII-PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------- 139 (335)
Q Consensus 68 vsVii-p~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~------- 139 (335)
++|.+ |.|..+.... .+.+.+..... ..--.+++-+.++++.+.++++...+. + .++++.-+
T Consensus 3 ~~vCv~pl~~~~~~~~-~l~e~ie~~~~------~G~~~~~~Y~~~~~~~~~~vL~~Y~~~-g--~v~~~~w~~~~~~~~ 72 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWL-QLIEWIEYHRL------LGVDHFYFYDNSSSPSVRKVLKEYERS-G--YVEVIPWPLRPKFPD 72 (285)
T ss_pred EEEEccchhcccccHH-HHHHHHHHHHH------hCCCEEEEEEccCCHHHHHhHHHHhhc-C--eEEEEEcccccccCC
Confidence 56666 6666443222 23333332222 134677777788999999999887665 2 57776664
Q ss_pred -------CC-----CChHHHHHHHHHhcC--CCEEEEEeCCCCCCcch----HHHHHHHHHHhc
Q 019818 140 -------RN-----HGKGEAIRKGMLHSR--GELLLMLDADGATKVTD----LEKLESQIHAVG 185 (335)
Q Consensus 140 -------~~-----~Gk~~aln~g~~~a~--~d~v~~~DaD~~~~~~~----l~~l~~~~~~~~ 185 (335)
.+ .|-..|.|..+.+.+ .++++++|.|..+-|.. ...+...+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~ 136 (285)
T PF01697_consen 73 FPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFP 136 (285)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhcc
Confidence 01 234667788887765 58999999999775544 666666665543
No 136
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=87.84 E-value=3.4 Score=35.11 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=59.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~g~~~ 154 (335)
+....|+.+++.+... .-+|+|+... . +....... . ++.++..+. ..|...++..|+..
T Consensus 31 ~g~~ll~~~i~~l~~~-----------~~~ivvv~~~-~----~~~~~~~~--~--~~~~i~~~~~~~G~~~si~~~l~~ 90 (200)
T PRK02726 31 QGVPLLQRVARIAAAC-----------ADEVYIITPW-P----ERYQSLLP--P--GCHWLREPPPSQGPLVAFAQGLPQ 90 (200)
T ss_pred CCEeHHHHHHHHHHhh-----------CCEEEEECCC-H----HHHHhhcc--C--CCeEecCCCCCCChHHHHHHHHHh
Confidence 5566777777776441 2366666431 1 12222211 1 466666543 47888999999999
Q ss_pred cCCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 155 SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 155 a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
...++++++++|.. ++++.+.++++..++
T Consensus 91 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 91 IKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 88899999999996 589999999988754
No 137
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=87.33 E-value=2.9 Score=34.76 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~Gk~~aln~g~~ 153 (335)
++...|..+++.+... -.+|+|+.+... .+.. .... ++.++.. +...|...++..|+.
T Consensus 25 ~g~pll~~~l~~l~~~-----------~~~ivv~~~~~~---~~~~---~~~~---~~~~i~~~~~~~~g~~~si~~al~ 84 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ-----------VSDLAISANRNP---ERYA---QAGF---GLPVVPDALADFPGPLAGILAGLR 84 (186)
T ss_pred CCEEHHHHHHHHHHhh-----------CCEEEEEcCCCH---HHHh---hccC---CCcEEecCCCCCCCCHHHHHHHHH
Confidence 4556677777766431 236777654321 1111 1111 3455554 234788999999999
Q ss_pred hcCCCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 154 ~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
....++++++++|. .++++.+.++++.+.+
T Consensus 85 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 85 WAGTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred hcCCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 88889999999998 5799999999998854
No 138
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=87.30 E-value=3.4 Score=35.68 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=57.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~al 148 (335)
++|+-+ ...|...++++.+. .--+|+||.....+ .+.+...... ++.++..+. ..|.+.++
T Consensus 23 l~~~~g-~~li~~~l~~l~~~----------gi~~i~vv~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~g~~~s~ 85 (229)
T cd02523 23 LLEING-KPLLERQIETLKEA----------GIDDIVIVTGYKKE----QIEELLKKYP--NIKFVYNPDYAETNNIYSL 85 (229)
T ss_pred eeeECC-EEHHHHHHHHHHHC----------CCceEEEEeccCHH----HHHHHHhccC--CeEEEeCcchhhhCcHHHH
Confidence 455544 36777777776652 23477777653222 2233322223 577776653 47888899
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHH
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLE 178 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~ 178 (335)
..|.... .+.++++.+|....++.+..+.
T Consensus 86 ~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 86 YLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 9998887 6778999999988876655544
No 139
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=87.11 E-value=11 Score=32.68 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=58.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..+...++.+.+. .--+|+++.....+...+.+.+.. +++ ..+.++..+...|-+.++..
T Consensus 25 l~~i~g~-~li~~~l~~l~~~----------~~~~i~vv~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~g~~~sl~~ 91 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREA----------GIEDIGIVVGPTGEEIKEALGDGS-RFG-VRITYILQEEPLGLAHAVLA 91 (236)
T ss_pred eeEECCc-chHHHHHHHHHHC----------CCCEEEEEcCCCHHHHHHHhcchh-hcC-CeEEEEECCCCCChHHHHHH
Confidence 5666454 7777777777651 234677776543333333332211 111 24556655556788899999
Q ss_pred HHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
|......+-++++.+|...+.+ +..+++.+.+
T Consensus 92 a~~~i~~~~~li~~~D~~~~~~-~~~~~~~~~~ 123 (236)
T cd04189 92 ARDFLGDEPFVVYLGDNLIQEG-ISPLVRDFLE 123 (236)
T ss_pred HHHhcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 9887754445668899988765 4556665543
No 140
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=86.96 E-value=4.3 Score=39.32 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=63.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+.+. +.+...++++.+. .--+++++.....+ ++.+.+ .+.. .+.++..++..|-+.++..
T Consensus 25 l~pi~g~-pli~~~l~~l~~~----------gi~~iiiv~~~~~~---~i~~~~-~~~~--~i~~~~~~~~~Gt~~al~~ 87 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREA----------GAGRIVLVVGHQAE---KVREHF-AGDG--DVSFALQEEQLGTGHAVAC 87 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhc----------CCCeEEEEECCCHH---HHHHHh-ccCC--ceEEEecCCCCCHHHHHHH
Confidence 5666554 6677777766551 23466666553322 222222 2222 4666666667788899999
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
++.... .|.++++++|. .+.+..+.++++.+.+.
T Consensus 88 a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~ 124 (459)
T PRK14355 88 AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT 124 (459)
T ss_pred HHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc
Confidence 988764 47899999998 57888999999877553
No 141
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=86.70 E-value=4.5 Score=34.63 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHhcC-----CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 143 GKGEAIRKGMLHSR-----GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 143 Gk~~aln~g~~~a~-----~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
|...++..|++... .|.++++++|.. +.++.+.++++.+.+.
T Consensus 79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~ 126 (223)
T cd02513 79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE 126 (223)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC
Confidence 56777888887653 389999999996 5889999999988654
No 142
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=86.64 E-value=4.8 Score=34.91 Aligned_cols=99 Identities=10% Similarity=0.102 Sum_probs=59.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEE--cCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL--LGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~--~~~~~Gk~~al 148 (335)
++|+-+. +.|..+++++.++ .--+|+++.....+...+.+.+.... . ++.++. .....|-+.++
T Consensus 25 llpv~g~-pli~~~l~~l~~~----------g~~~v~iv~~~~~~~~~~~l~~~~~~-~--~~~i~~~~~~~~~G~~~al 90 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAKA----------GVKEIILAVNYRPEDMVPFLKEYEKK-L--GIKITFSIETEPLGTAGPL 90 (233)
T ss_pred cCeECCc-chHHHHHHHHHHC----------CCcEEEEEeeeCHHHHHHHHhccccc-C--CeEEEeccCCCCCccHHHH
Confidence 4566554 6777777777652 12466666654444434444332111 1 344433 33457888899
Q ss_pred HHHHHhcCC--CEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a~~--d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
..|...... +-++++.+|...+.+ +.++++...+.
T Consensus 91 ~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 127 (233)
T cd06425 91 ALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKH 127 (233)
T ss_pred HHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHc
Confidence 999887753 446777999877655 57888776554
No 143
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=86.51 E-value=10 Score=33.69 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcC-
Q 019818 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR- 156 (335)
Q Consensus 78 ~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~- 156 (335)
...|..+++.+.. ....-+|++|.+... .+..+.....++ ..+.++ ....+....+..|++...
T Consensus 52 kpll~~tl~~~~~---------~~~i~~IvVV~~~~~---~~~~~~~~~~~~-~~i~~v--~gg~~r~~SV~~gl~~l~~ 116 (252)
T PLN02728 52 QPIALYSLYTFAR---------MPEVKEIVVVCDPSY---RDVFEEAVENID-VPLKFA--LPGKERQDSVFNGLQEVDA 116 (252)
T ss_pred eEHHHHHHHHHHh---------CCCCCeEEEEeCHHH---HHHHHHHHHhcC-CceEEc--CCCCchHHHHHHHHHhccC
Confidence 3455555555544 122457777765321 233333333332 134332 233456777888888763
Q ss_pred -CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 157 -GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 157 -~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.++|++.|++-. ++++.+.++++.....
T Consensus 117 ~~~~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 117 NSELVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred CCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 578999998764 6888889999877653
No 144
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=86.46 E-value=1.9 Score=37.40 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCC-hHHHHHHHHHh
Q 019818 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHG-KGEAIRKGMLH 154 (335)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~G-k~~aln~g~~~ 154 (335)
..+-|..++++|.+ ...-|+++|.+|-. .+.++++..+++. +.+++.++. .+| -+..+-.|...
T Consensus 30 gr~ii~~~i~~L~~----------~gi~e~vvV~~g~~---~~lve~~l~~~~~-~~~iv~N~~y~ktN~~~Sl~~akd~ 95 (239)
T COG1213 30 GREIIYRTIENLAK----------AGITEFVVVTNGYR---ADLVEEFLKKYPF-NAKIVINSDYEKTNTGYSLLLAKDY 95 (239)
T ss_pred CeEeHHHHHHHHHH----------cCCceEEEEeccch---HHHHHHHHhcCCc-ceEEEeCCCcccCCceeEEeeehhh
Confidence 44677888888876 34578999987654 3456667777774 577777763 233 35678888888
Q ss_pred cCCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 155 SRGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 155 a~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
+.++ ++++++|...+|..+++++++-
T Consensus 96 ~~~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 96 MDGR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred hcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence 8888 8889999999999999988643
No 145
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=86.38 E-value=9.2 Score=32.05 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=62.8
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|. +....|...++++.. .. .-+|+++.+..++.+.+.+++ . ...+. .....|....+..
T Consensus 21 Ll~i-~GkplI~~vi~~l~~---------~~-i~~I~Vv~~~~~~~~~~~l~~---~----~~~~~-~~~g~G~~~~l~~ 81 (183)
T TIGR00454 21 LIEV-CGRCLIDHVLSPLLK---------SK-VNNIIIATSPHTPKTEEYINS---A----YKDYK-NASGKGYIEDLNE 81 (183)
T ss_pred EeEE-CCEEHHHHHHHHHHh---------CC-CCEEEEEeCCCHHHHHHHHhh---c----CcEEE-ecCCCCHHHHHHH
Confidence 3444 445667777666654 12 346777765444455444432 1 22233 2456778888999
Q ss_pred HHHhc-CCCEEEEEeCCCC-CCcchHHHHHHHHHHhccc
Q 019818 151 GMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 151 g~~~a-~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~~~ 187 (335)
|++.. ..+.++++-+|.. +.++.+..+++.+...+..
T Consensus 82 al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~ 120 (183)
T TIGR00454 82 CIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAP 120 (183)
T ss_pred HhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCC
Confidence 99853 3578999999996 6999999999988665443
No 146
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=86.00 E-value=10 Score=32.91 Aligned_cols=94 Identities=9% Similarity=0.148 Sum_probs=55.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~al 148 (335)
++|+ ++...|..+++.+.+ ...--+|+|+-+. + .+.+....+ ++.++..++ ..|.+. +
T Consensus 20 l~~i-~gkpll~~~l~~l~~---------~~~i~~ivvv~~~--~----~i~~~~~~~---~~~~~~~~~~~~~gt~~-~ 79 (239)
T cd02517 20 LADI-AGKPMIQHVYERAKK---------AKGLDEVVVATDD--E----RIADAVESF---GGKVVMTSPDHPSGTDR-I 79 (239)
T ss_pred Cccc-CCcCHHHHHHHHHHh---------CCCCCEEEEECCc--H----HHHHHHHHc---CCEEEEcCcccCchhHH-H
Confidence 4454 455677777777655 1123467776431 2 223333333 355544432 335543 4
Q ss_pred HHHHHhcCC--CEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHSRG--ELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a~~--d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
..++..... |.++++++|. .++++.+.++++.+.++
T Consensus 80 ~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 80 AEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred HHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 455555554 8899999999 67899999999877543
No 147
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=85.59 E-value=7.3 Score=34.38 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=62.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..|...|+++.+ ...--+|+++.....+...+.+.+.... ....+.++...+..|-+.|+..
T Consensus 25 llpv~g~-plI~~~l~~l~~---------~~gi~~i~iv~~~~~~~i~~~l~~~~~~-~~~~i~~~~~~~~~Gt~~al~~ 93 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAK---------VPDLKEVLLIGFYPESVFSDFISDAQQE-FNVPIRYLQEYKPLGTAGGLYH 93 (257)
T ss_pred cCeECCe-eHHHHHHHHHHh---------cCCCcEEEEEecCCHHHHHHHHHhcccc-cCceEEEecCCccCCcHHHHHH
Confidence 6677666 777777777754 1123577777665444444444332111 1124555555556788888877
Q ss_pred HHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR---GELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
+..... .+.++++.+|..... .+..+++...+.
T Consensus 94 a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~ 129 (257)
T cd06428 94 FRDQILAGNPSAFFVLNADVCCDF-PLQELLEFHKKH 129 (257)
T ss_pred HHHHhhccCCCCEEEEcCCeecCC-CHHHHHHHHHHc
Confidence 776542 467889999998655 478888766543
No 148
>PLN03153 hypothetical protein; Provisional
Probab=85.48 E-value=4.3 Score=39.48 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=66.5
Q ss_pred CChHHHHHH------HHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeec
Q 019818 142 HGKGEAIRK------GMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGS 213 (335)
Q Consensus 142 ~Gk~~aln~------g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~ 213 (335)
.|...+++. .++. -..++++++|+|+.+..+.|.++++.++.. + ...+|.
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDpt--k--------------------p~YIGs 245 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPS--E--------------------MVYVGG 245 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCC--C--------------------CEEecc
Confidence 465556544 3333 346999999999999877777777666432 1 456676
Q ss_pred chhhhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHh---hhhhhh---ccccchHHHHHHhHH
Q 019818 214 RAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKL---FTNIRL---KRWCFDVELVYLCKR 287 (335)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i---~~~~~~---~~~~~D~el~~r~~~ 287 (335)
..-... . ....+..+..+++|+ ++++.+++++ +..... ..++.|..|..-+..
T Consensus 246 ~Se~~~-------q-------------n~~f~~~fA~GGAG~-~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~e 304 (537)
T PLN03153 246 PSESHS-------A-------------NSYFSHNMAFGGGGI-AISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITE 304 (537)
T ss_pred cccccc-------c-------------ccccccccccCCceE-EEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHH
Confidence 642110 0 000011233355555 8999666665 333321 235679988888888
Q ss_pred cCCCEEEee
Q 019818 288 FGIPIIEIS 296 (335)
Q Consensus 288 ~G~~i~~~p 296 (335)
.|.++...|
T Consensus 305 lGV~LT~~~ 313 (537)
T PLN03153 305 LGVPLSREP 313 (537)
T ss_pred cCCCceecC
Confidence 898886665
No 149
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=85.37 E-value=12 Score=33.85 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=62.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~Gk~~al 148 (335)
++|+++. +.|.-.|+.+.. ..--+|++|...... +.++++.... -+.++.+...++..|-+.|+
T Consensus 28 Llpv~gk-PmI~~~l~~l~~----------aGi~~I~ii~~~~~~---~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al 93 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQDT---PRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAF 93 (292)
T ss_pred EeEECCE-EHHHHHHHHHHH----------CCCCEEEEEecCCch---HHHHHHHcCccccCceeEEEECCCCCCHHHHH
Confidence 7899887 777777777765 223577777543221 2223332111 11257777777788999999
Q ss_pred HHHHHhcCC-CEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 149 RKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 149 n~g~~~a~~-d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|...... ++++ +-+|..+....+..+++...+
T Consensus 94 ~~a~~~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 94 IIGEEFIGGDDCAL-VLGDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred HHHHHHhCCCCEEE-EECCeeeeccCHHHHHHHHHh
Confidence 999888754 5555 457776655668888876644
No 150
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=85.32 E-value=7.6 Score=35.02 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=64.8
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---C--
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---N-- 141 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~-- 141 (335)
.++||....|=...+..++.|++.. ...++.+.|++|+.+++..+.+.+....++ ..+.++..+. .
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n--------~~~~~~fhii~d~~s~~~~~~l~~~~~~~~-~~i~f~~i~~~~~~~~ 72 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFY--------RRNPLHFHLITDEIARRILATLFQTWMVPA-VEVSFYNAEELKSRVS 72 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHc--------CCCCEEEEEEECCcCHHHHHHHHHhccccC-cEEEEEEhHHhhhhhc
Confidence 3788888855566777788888762 445699999999887777666665433322 2455555431 1
Q ss_pred ----CChHHH---HHHHHHh-c--CCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 142 ----HGKGEA---IRKGMLH-S--RGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 142 ----~Gk~~a---ln~g~~~-a--~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
...+.. ....+.. - .-|-++.+|+|..+. +.|.+|.+.+
T Consensus 73 ~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~-~di~eL~~~~ 121 (280)
T cd06431 73 WIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFA-TDIAELWKIF 121 (280)
T ss_pred cCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEc-CCHHHHHHHh
Confidence 111111 1222222 2 358999999999876 4567777765
No 151
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=85.09 E-value=9.7 Score=32.98 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEE-EEcC-----CCCChHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI-ILLG-----RNHGKGEAIR 149 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~v-i~~~-----~~~Gk~~aln 149 (335)
++.+.+..+++.+.+ ....-+|+|..|. ++. .+.+++++ +.+ +.++ ...|...++.
T Consensus 22 ~GkpLi~~ti~~a~~---------s~~~d~IvVstd~--~~i----~~~a~~~g---~~v~~~r~~~l~~d~~~~~~si~ 83 (222)
T TIGR03584 22 CGKPMIAYSIEAALN---------SGLFDKVVVSTDD--EEI----AEVAKSYG---ASVPFLRPKELADDFTGTAPVVK 83 (222)
T ss_pred CCcCHHHHHHHHHHh---------CCCCCEEEEeCCC--HHH----HHHHHHcC---CEeEEeChHHHcCCCCCchHHHH
Confidence 556677777777765 2223455554331 222 23333443 333 2222 2356777888
Q ss_pred HHHHhc----CCCEEEEEeCCCCC-CcchHHHHHHHHHH
Q 019818 150 KGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA 183 (335)
Q Consensus 150 ~g~~~a----~~d~v~~~DaD~~~-~~~~l~~l~~~~~~ 183 (335)
.|+... ..|+++++++|..+ .++.+.++++.+.+
T Consensus 84 ~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 84 HAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred HHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 888765 26999999999964 88999999999976
No 152
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.51 E-value=5.8 Score=38.19 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=60.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+ ...|..+|+++.+. ...+++++.....+. +++...+.. ++.++..+...|-+.++..
T Consensus 23 ll~v~g-kpli~~~l~~l~~~----------g~~~iivvv~~~~~~----i~~~~~~~~--~i~~v~~~~~~G~~~sv~~ 85 (450)
T PRK14360 23 LHPLGG-KSLVERVLDSCEEL----------KPDRRLVIVGHQAEE----VEQSLAHLP--GLEFVEQQPQLGTGHAVQQ 85 (450)
T ss_pred cCEECC-hhHHHHHHHHHHhC----------CCCeEEEEECCCHHH----HHHHhcccC--CeEEEEeCCcCCcHHHHHH
Confidence 455544 36677777776551 224566655432222 233323333 5777766556777888888
Q ss_pred HHHhcC--CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
++.... .+.++++++|.. +.++.+.++++.+.+.
T Consensus 86 ~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~ 122 (450)
T PRK14360 86 LLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS 122 (450)
T ss_pred HHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 887653 356788999984 6888999999887654
No 153
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=84.37 E-value=8.3 Score=33.26 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=58.1
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
++...+..+++.+.. ....-+|+|+.+... ..+..+....... ++.++.. ..+...++..|+...
T Consensus 29 ~g~pli~~~l~~l~~---------~~~~~~ivvv~~~~~--~~~~~~~~~~~~~--~~~~~~~--~~~~~~sv~~~l~~~ 93 (227)
T PRK00155 29 GGKPILEHTLEAFLA---------HPRIDEIIVVVPPDD--RPDFAELLLAKDP--KVTVVAG--GAERQDSVLNGLQAL 93 (227)
T ss_pred CCEEHHHHHHHHHHc---------CCCCCEEEEEeChHH--HHHHHHHhhccCC--ceEEeCC--cchHHHHHHHHHHhC
Confidence 455666666666654 222347777765322 1222222221111 3444432 235788899999876
Q ss_pred -CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 156 -~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
..|+++++|+|.. ++++.+.++++.+.++
T Consensus 94 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 94 PDDDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred CCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 5789999999986 6999999999988654
No 154
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=84.14 E-value=9 Score=34.63 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=61.3
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~Gk~~al 148 (335)
++|+++. +.|.-.|+.+.. ..--+|++|..... .+.+++..... -+.++.++..++..|-+.|+
T Consensus 24 Llpv~gk-PmI~~~L~~l~~----------aGi~~I~iv~~~~~---~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al 89 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAF 89 (286)
T ss_pred eeEECCE-EhHHHHHHHHHH----------CCCCEEEEEecCCc---HHHHHHHhccccccCceEEEEEccCCCCHHHHH
Confidence 7888887 777777777765 22357766653222 12222222111 11256666666678999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|......+-++++-+|..+....+..+++...+
T Consensus 90 ~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~ 124 (286)
T TIGR01207 90 IIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAA 124 (286)
T ss_pred HHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHh
Confidence 99998876543444558876666778888776543
No 155
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=83.46 E-value=20 Score=31.00 Aligned_cols=90 Identities=12% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~aln~g~~ 153 (335)
+..+.|..+++.+.+ ...--+|+|+.|. +... +..+.+ ++.++..++ ..|.+ .+..++.
T Consensus 25 ~GkPli~~~i~~l~~---------~~~~~~ivv~t~~--~~i~----~~~~~~---~~~v~~~~~~~~~g~~-~~~~a~~ 85 (238)
T PRK13368 25 LGKPMIQHVYERAAQ---------AAGVEEVYVATDD--QRIE----DAVEAF---GGKVVMTSDDHLSGTD-RLAEVML 85 (238)
T ss_pred CCcCHHHHHHHHHHh---------cCCCCeEEEECCh--HHHH----HHHHHc---CCeEEecCccCCCccH-HHHHHHH
Confidence 345666666666655 1123567776542 3333 333333 344444332 23443 3555666
Q ss_pred hcCCCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
....|.++++++|. .+.++.+.++++.+.+.
T Consensus 86 ~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~ 117 (238)
T PRK13368 86 KIEADIYINVQGDEPMIRPRDIDTLIQPMLDD 117 (238)
T ss_pred hCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHC
Confidence 66668999999999 47899999999988653
No 156
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=83.28 E-value=6.6 Score=38.39 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+. +.|..+++++... .--+|+++.....+ .+++.... .++.++..+...|.+.++..
T Consensus 29 llpi~gk-pli~~~l~~l~~~----------gi~~ivvv~~~~~~----~i~~~~~~---~~i~~v~~~~~~Gt~~al~~ 90 (481)
T PRK14358 29 LHPVAGR-PMVAWAVKAARDL----------GARKIVVVTGHGAE----QVEAALQG---SGVAFARQEQQLGTGDAFLS 90 (481)
T ss_pred ecEECCe-eHHHHHHHHHHhC----------CCCeEEEEeCCCHH----HHHHHhcc---CCcEEecCCCcCCcHHHHHH
Confidence 4566554 6777777766541 23567777653222 22332222 25777776667788999988
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
|++... .+-++++++|. .+.+..+.++++...+.
T Consensus 91 ~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~ 127 (481)
T PRK14358 91 GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ 127 (481)
T ss_pred HHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 887753 23377899998 56788899998877554
No 157
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=82.75 E-value=6.3 Score=37.93 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=59.0
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+. ..|..+++.+.. ..--+|+++.....+.. .+...... ..+.++...+..|.+.++..
T Consensus 27 ll~v~gk-pli~~~l~~l~~----------~gi~~ivvv~~~~~~~i----~~~~~~~~-~~~~~~~~~~~~G~~~sl~~ 90 (446)
T PRK14353 27 LHPVAGR-PMLAHVLAAAAS----------LGPSRVAVVVGPGAEAV----AAAAAKIA-PDAEIFVQKERLGTAHAVLA 90 (446)
T ss_pred cCEECCc-hHHHHHHHHHHh----------CCCCcEEEEECCCHHHH----HHHhhccC-CCceEEEcCCCCCcHHHHHH
Confidence 4565453 666666666654 12346666664332222 22222221 13444444556788888888
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
+++... .|.++++++|. .++++.+..+++..++
T Consensus 91 a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~ 126 (446)
T PRK14353 91 AREALAGGYGDVLVLYGDTPLITAETLARLRERLAD 126 (446)
T ss_pred HHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence 887753 47788899998 6788999999886543
No 158
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=82.14 E-value=34 Score=31.97 Aligned_cols=193 Identities=13% Similarity=0.029 Sum_probs=103.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCC---CCceEEEEEECCCCcch--HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK---SFTYEVLIIDDGSSDGT--KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~---~~~~eiivvdd~s~d~t--~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
|.+-++|...-+. ..+ +..++.+... +. ..+..++++-.-..++. ...+.+-++.+. .|.+....+
T Consensus 95 ~~lLl~V~S~~~~--far--R~aiR~TW~~---~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~yg--DIi~~df~D 165 (349)
T KOG2287|consen 95 PELLLLVKSAPDN--FAR--RNAIRKTWGN---ENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYG--DIIQVDFED 165 (349)
T ss_pred ceEEEEEecCCCC--HHH--HHHHHHHhcC---ccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhC--CEEEEeccc
Confidence 5566666664443 232 3334444331 12 23466666555444332 344444456666 677666665
Q ss_pred CCC----hH-HHHHHHHHhcC-CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecc
Q 019818 141 NHG----KG-EAIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSR 214 (335)
Q Consensus 141 ~~G----k~-~aln~g~~~a~-~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~ 214 (335)
+.. |. ..++.+...+. .++|+-+|+|..+.++.|.+.+.... .+.. ....|.-
T Consensus 166 ty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~--------------------~~~~G~v 224 (349)
T KOG2287|consen 166 TYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLN-DPSS--------------------DLYYGRV 224 (349)
T ss_pred chhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccC-CCCc--------------------ceEEEee
Confidence 433 33 45677776664 79999999999999988777665542 1222 5566644
Q ss_pred hhhhhHhhhhhhhhHHHHHHHHHHHHHHHhC--CCCccCCCceeeeeHHHHHHhhhhhhh-c-cccchHHHHHHhHHc-C
Q 019818 215 AHLEEKALATRKWYRNFLMKGFHLVVILTAG--PGIRDTQCGFKMFTRAAARKLFTNIRL-K-RWCFDVELVYLCKRF-G 289 (335)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~r~~l~~i~~~~~~-~-~~~~D~el~~r~~~~-G 289 (335)
.... ...|..-++ .+....... .-.....|+..++++++.+.+...... . ...+|.-++.-++.. |
T Consensus 225 ~~~~-------~p~R~~~~K--wyVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~g 295 (349)
T KOG2287|consen 225 IQNA-------PPIRDKTSK--WYVPESEYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLG 295 (349)
T ss_pred cccC-------CCCCCCCCC--CccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC
Confidence 3210 001111000 001111111 122334555779999999999543221 1 223588888888887 7
Q ss_pred CCEEEeee
Q 019818 290 IPIIEISV 297 (335)
Q Consensus 290 ~~i~~~p~ 297 (335)
.+....+-
T Consensus 296 i~~~~~~~ 303 (349)
T KOG2287|consen 296 IKPVNHPG 303 (349)
T ss_pred CCcccCcc
Confidence 66666653
No 159
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=81.28 E-value=11 Score=36.37 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=60.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..|..+++++.+. . -.+++++.....+ .+++.... .+.++..++..|.+.++..
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~---------g-i~~iivvv~~~~~----~i~~~~~~----~~~~~~~~~~~g~~~al~~ 84 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKA---------G-IDKIVTVVGHGAE----EVKEVLGD----RSEFALQEEQLGTGHAVMQ 84 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhC---------C-CCeEEEEeCCCHH----HHHHHhcC----CcEEEEcCCCCCHHHHHHH
Confidence 4566554 7777777777651 1 2456655432222 12222111 3455555556788888888
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
++.... .|.++++++|. .++++.+.++++..++
T Consensus 85 a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 85 AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred HHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 888764 47899999998 5788899999987754
No 160
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=80.91 E-value=22 Score=30.94 Aligned_cols=93 Identities=6% Similarity=0.136 Sum_probs=53.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~Gk~~al 148 (335)
++|. ++...|..+++.+... ...+|+|+.+ .+.. .+....+ ++.++.. +...|.+...
T Consensus 21 Ll~i-~Gkpll~~~l~~l~~~----------~i~~ivvv~~--~~~i----~~~~~~~---~~~v~~~~~~~~~gt~~~~ 80 (245)
T PRK05450 21 LADI-GGKPMIVRVYERASKA----------GADRVVVATD--DERI----ADAVEAF---GGEVVMTSPDHPSGTDRIA 80 (245)
T ss_pred cccc-CCcCHHHHHHHHHHhc----------CCCeEEEECC--cHHH----HHHHHHc---CCEEEECCCcCCCchHHHH
Confidence 3444 4456777777776552 2356776654 2222 2222332 3444443 2233544333
Q ss_pred HHHHHhc---CCCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHS---RGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a---~~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
.++... ..+.++++++|. .++++.+.++++.+...
T Consensus 81 -~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 81 -EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred -HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence 233332 458899999999 57999999999877543
No 161
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=80.75 E-value=12 Score=29.19 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=42.5
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc--CCCEEEEEeCCCC-CCcchHHHH
Q 019818 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGA-TKVTDLEKL 177 (335)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a--~~d~v~~~DaD~~-~~~~~l~~l 177 (335)
....++++.-++..+..... +. ...+ .+.+.... ..+.+.-++.+++.+ ..+-|+++-+|+. ++++.|.+.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~--~~-~~~~--~~~~~~Q~-g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A 81 (122)
T PF09837_consen 8 ADGADVVLAYTPDGDHAAFR--QL-WLPS--GFSFFPQQ-GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQA 81 (122)
T ss_dssp TSSSEEEEEE----TTHHHH--HH-HH-T--TSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHH
T ss_pred CCCcCEEEEEcCCccHHHHh--cc-ccCC--CCEEeecC-CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Confidence 34577777777665554332 11 1112 45555543 345666677777776 4589999999995 688889888
Q ss_pred HHHHHHh
Q 019818 178 ESQIHAV 184 (335)
Q Consensus 178 ~~~~~~~ 184 (335)
.+.++++
T Consensus 82 ~~~L~~~ 88 (122)
T PF09837_consen 82 FEALQRH 88 (122)
T ss_dssp HHHTTT-
T ss_pred HHHhccC
Confidence 8888554
No 162
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=79.41 E-value=18 Score=31.41 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=58.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC-cchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
++|+- ..+.|..+|+++.+ ..--+|++|..... +...+.+... ..+. .++.+...++..|-+.|+.
T Consensus 25 llpv~-~~pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~~~~~l~~~-~~~~-~~i~~~~~~~~~G~~~al~ 91 (240)
T cd02538 25 LLPVY-DKPMIYYPLSTLML----------AGIREILIISTPEDLPLFKELLGDG-SDLG-IRITYAVQPKPGGLAQAFI 91 (240)
T ss_pred eeEEC-CEEhHHHHHHHHHH----------CCCCEEEEEeCcchHHHHHHHHhcc-cccC-ceEEEeeCCCCCCHHHHHH
Confidence 44554 45677777776654 12347777654322 2222222110 1111 1355555555678899999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
.+......+-++++.+|....+..+.++++...+
T Consensus 92 ~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~ 125 (240)
T cd02538 92 IGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAA 125 (240)
T ss_pred HHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence 9988876666777789987766667788776543
No 163
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=79.21 E-value=9.8 Score=36.72 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=58.7
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|. +....|..+++++.. ...-+|+++.....+ .+++.. +..+++++..+...|-+.++..
T Consensus 27 l~~i-~gkpli~~~l~~l~~----------~~~~~iivv~~~~~~----~i~~~~---~~~~~~~v~~~~~~Gt~~al~~ 88 (456)
T PRK14356 27 LQTL-LGEPMLRFVYRALRP----------LFGDNVWTVVGHRAD----MVRAAF---PDEDARFVLQEQQLGTGHALQC 88 (456)
T ss_pred eccc-CCCcHHHHHHHHHHh----------cCCCcEEEEECCCHH----HHHHhc---cccCceEEEcCCCCCcHHHHHH
Confidence 4454 345666666666543 122467666543222 222222 1125677776666788888888
Q ss_pred HHHhcC---CCEEEEEeCCC-CCCcchHHHHHHHHH
Q 019818 151 GMLHSR---GELLLMLDADG-ATKVTDLEKLESQIH 182 (335)
Q Consensus 151 g~~~a~---~d~v~~~DaD~-~~~~~~l~~l~~~~~ 182 (335)
++.... .|.++++++|. .++++.+..+++...
T Consensus 89 a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 89 AWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred HHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 876653 58999999999 578888999888754
No 164
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=78.94 E-value=78 Score=32.09 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=43.6
Q ss_pred eEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcCC---CCC-hHH-HHHHHHHhcCCCEEEEEeCCCCCCcchHHHH
Q 019818 104 YEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGR---NHG-KGE-AIRKGMLHSRGELLLMLDADGATKVTDLEKL 177 (335)
Q Consensus 104 ~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~~---~~G-k~~-aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l 177 (335)
..+.++---+.++ +.+.+++-++.|. ++.+....+ |.. |.- .+..+....+.+|++-.|+|.-+..+.|.+.
T Consensus 419 v~~rFvVG~s~n~~l~~~L~~Ea~~yg--DIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~ 496 (636)
T PLN03133 419 VAVRFFVGLHKNQMVNEELWNEARTYG--DIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (636)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHcC--CeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHH
Confidence 4444544434443 3345555556676 565554443 322 332 3344544457899999999999988876665
Q ss_pred HH
Q 019818 178 ES 179 (335)
Q Consensus 178 ~~ 179 (335)
+.
T Consensus 497 L~ 498 (636)
T PLN03133 497 LK 498 (636)
T ss_pred HH
Confidence 53
No 165
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=78.77 E-value=13 Score=31.56 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=55.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~Gk~~al 148 (335)
++|..|. ..|..+++.+.+. .--+|+++.+... +.+++...+. ...++.++..+...|-+.++
T Consensus 23 ll~~~g~-pli~~~l~~l~~~----------~~~~iivv~~~~~----~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l 87 (220)
T cd06426 23 MLKVGGK-PILETIIDRFIAQ----------GFRNFYISVNYLA----EMIEDYFGDGSKFGVNISYVREDKPLGTAGAL 87 (220)
T ss_pred cCeECCc-chHHHHHHHHHHC----------CCcEEEEECccCH----HHHHHHHCCccccCccEEEEECCCCCcchHHH
Confidence 5666665 6777777777652 1236666654322 2222322211 11135555544456777777
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
..+... ..+.++++.+|... ...+..+++.+...
T Consensus 88 ~~~~~~-~~~~~lv~~~D~i~-~~~~~~l~~~~~~~ 121 (220)
T cd06426 88 SLLPEK-PTDPFLVMNGDILT-NLNYEHLLDFHKEN 121 (220)
T ss_pred HHHHhh-CCCCEEEEcCCEee-ccCHHHHHHHHHhc
Confidence 655443 36778888999755 45677888877653
No 166
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=78.58 E-value=32 Score=30.39 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=63.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHH---H---HHHc-------------CCC
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD---F---VRKY-------------TVD 131 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~---~---~~~~-------------~~~ 131 (335)
.+|+-+. ..|..+|+++.+. .--+|+++.....+...+.+.+ + ..+. +..
T Consensus 25 llpv~gk-pli~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAA----------GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLA 93 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHC----------CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCc
Confidence 5677665 7777777777651 2246777665433322222211 0 0010 112
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcc--hHHHHHHHHHH
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHA 183 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~--~l~~l~~~~~~ 183 (335)
.+.++..+...|-+.++..+......+-++++.+|.....+ .+.++++...+
T Consensus 94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 45566666668999999999988866778888899877654 58888887754
No 167
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=78.12 E-value=29 Score=30.52 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=38.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcc--hHHHHHHHHHHh
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHAV 184 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~--~l~~l~~~~~~~ 184 (335)
++.+.......|-+.|+..+......+-++++.+|...... .+.++++...+.
T Consensus 94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~ 148 (260)
T TIGR01099 94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKY 148 (260)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHh
Confidence 34455455568899999999887755667888888877654 788888877543
No 168
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=77.78 E-value=14 Score=33.07 Aligned_cols=93 Identities=23% Similarity=0.241 Sum_probs=45.3
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCCh--
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGK-- 144 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~vi~~~~~~Gk-- 144 (335)
-|||++.+. .+...+ .++..+..+ ...-++||+...+ +|-+.+..+++..... ..+++-+..++-.++
T Consensus 3 GIVi~~g~~--~~~~a~-~lI~~LR~~---g~~LPIEI~~~~~--~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~ 74 (271)
T PF11051_consen 3 GIVITAGDK--YLWLAL-RLIRVLRRL---GNTLPIEIIYPGD--DDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSF 74 (271)
T ss_pred EEEEEecCc--cHHHHH-HHHHHHHHh---CCCCCEEEEeCCc--cccCHHHHHHHhhhhhhheecceEEeecccccccc
Confidence 478888773 333333 333334433 3666788888742 2223333333322000 012332222222221
Q ss_pred ---HHH-HHHHHHhcCCCEEEEEeCCCCC
Q 019818 145 ---GEA-IRKGMLHSRGELLLMLDADGAT 169 (335)
Q Consensus 145 ---~~a-ln~g~~~a~~d~v~~~DaD~~~ 169 (335)
+.. --.|+-.++-+=|+++|+|+.+
T Consensus 75 ~~~~~~~K~lA~l~ssFeevllLDaD~vp 103 (271)
T PF11051_consen 75 SKKGFQNKWLALLFSSFEEVLLLDADNVP 103 (271)
T ss_pred ccCCchhhhhhhhhCCcceEEEEcCCccc
Confidence 222 2234445677889999999986
No 169
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=77.65 E-value=21 Score=30.66 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=55.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHH-HHHHcCCCcEEEEEc-CCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-FVRKYTVDNVRIILL-GRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-~~~~~~~~~i~vi~~-~~~~Gk~~al 148 (335)
++|+.+. ..|..+|+.+.+ ..--++++|.. ......+.+.+ +....+ ++.++.. +...|-+.++
T Consensus 23 ll~i~g~-pli~~~l~~l~~----------~g~~~ivvv~~-~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~g~~~~l 88 (231)
T cd04183 23 LIEVDGK-PMIEWVIESLAK----------IFDSRFIFICR-DEHNTKFHLDESLKLLAP--NATVVELDGETLGAACTV 88 (231)
T ss_pred eeEECCE-EHHHHHHHhhhc----------cCCceEEEEEC-hHHhhhhhHHHHHHHhCC--CCEEEEeCCCCCcHHHHH
Confidence 4576665 677777776654 12345666653 22222222222 222222 3444333 3467888999
Q ss_pred HHHHHhcC-CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 149 RKGMLHSR-GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 149 n~g~~~a~-~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
..|..... .+.++++.+|...+.+.. .++...
T Consensus 89 ~~a~~~l~~~~~~lv~~~D~i~~~~~~-~~~~~~ 121 (231)
T cd04183 89 LLAADLIDNDDPLLIFNCDQIVESDLL-AFLAAF 121 (231)
T ss_pred HHHHhhcCCCCCEEEEecceeeccCHH-HHHHHh
Confidence 99988774 477889999998877755 444433
No 170
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=77.28 E-value=30 Score=28.72 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCC
Q 019818 79 HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGE 158 (335)
Q Consensus 79 ~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d 158 (335)
+.|...++++.+ .-.+|+++-+-++..|.+.+++. .+.++..+ ..|...-++.+++....
T Consensus 28 pLI~~v~~al~~-----------~~d~i~v~isp~tp~t~~~~~~~-------gv~vi~tp-G~GYv~Dl~~al~~l~~- 87 (177)
T COG2266 28 PLIDRVLEALRK-----------IVDEIIVAISPHTPKTKEYLESV-------GVKVIETP-GEGYVEDLRFALESLGT- 87 (177)
T ss_pred cHHHHHHHHHHh-----------hcCcEEEEeCCCCHhHHHHHHhc-------CceEEEcC-CCChHHHHHHHHHhcCC-
Confidence 455555555544 24699999999999999888766 68888876 47899999999998866
Q ss_pred EEEEEeCCCC-CCcchHHHHHHHHH
Q 019818 159 LLLMLDADGA-TKVTDLEKLESQIH 182 (335)
Q Consensus 159 ~v~~~DaD~~-~~~~~l~~l~~~~~ 182 (335)
=++++-+|.. +.|..+..+.+.+.
T Consensus 88 P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 88 PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEEecccccCCHHHHHHHHHHHh
Confidence 5777888885 58889999999886
No 171
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=76.54 E-value=16 Score=31.00 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=43.8
Q ss_pred cEEEEEcCCCC-ChHHHHHHHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 132 NVRIILLGRNH-GKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 132 ~i~vi~~~~~~-Gk~~aln~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
++.++...... |.-+++.+|+++..+++++++-+|+. ++++.+..|.+.+.+.
T Consensus 61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~ 115 (192)
T COG0746 61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQT 115 (192)
T ss_pred CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhccc
Confidence 46666666555 99999999999999999999999996 5888888888887653
No 172
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=76.26 E-value=22 Score=32.99 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=59.5
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG-SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
++|+-+. ..|..+++++.+. .--+|+++... ..+...+.+.+. ..+. .++.++..+...|-+.++.
T Consensus 24 l~pv~g~-pli~~~l~~l~~~----------gi~~i~vv~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~G~~~al~ 90 (353)
T TIGR01208 24 LIPVANK-PILQYAIEDLAEA----------GITDIGIVVGPVTGEEIKEIVGEG-ERFG-AKITYIVQGEPLGLAHAVY 90 (353)
T ss_pred ccEECCE-eHHHHHHHHHHHC----------CCCEEEEEeCCCCHHHHHHHHhcc-cccC-ceEEEEECCCCCCHHHHHH
Confidence 4566555 6777777777651 23467766654 322222222210 1111 1455665556688999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
.+......+-++++.+|...+ ..+.++++.+.+
T Consensus 91 ~a~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~ 123 (353)
T TIGR01208 91 TARDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEE 123 (353)
T ss_pred HHHHhcCCCCEEEEECCeecC-ccHHHHHHHHHh
Confidence 999887554466778999775 567778877654
No 173
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=76.19 E-value=15 Score=34.60 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHhcCCCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 142 HGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 142 ~Gk~~aln~g~~~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
.|...++..|++....++++++++|. .++++.+.++++.+.+
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 57888899999998889999999997 4699999999987654
No 174
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=76.10 E-value=25 Score=32.98 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=69.8
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHH--cCCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK--YTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~vi~~~~~~Gk~~al 148 (335)
++|+-|. +.|+-.|+++.+ ..--|++++..-- .+.+++.... ....++.++......|-++++
T Consensus 26 llpI~gk-Pii~~~l~~L~~----------~Gv~eivi~~~y~----~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l 90 (358)
T COG1208 26 LLPIAGK-PLIEYVLEALAA----------AGVEEIVLVVGYL----GEQIEEYFGDGEGLGVRITYVVEKEPLGTAGAL 90 (358)
T ss_pred cceeCCc-cHHHHHHHHHHH----------CCCcEEEEEeccc----hHHHHHHHhcccccCCceEEEecCCcCccHHHH
Confidence 5777655 567777777655 3346777774322 2233332222 112378888888889999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
..+.....++-++++.+|...+-+ +..+++..++.
T Consensus 91 ~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 91 KNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred HHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 999999988889999999999988 98988877665
No 175
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=76.01 E-value=48 Score=28.22 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=58.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC-----CCcEEEEEcCCCCChH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-----VDNVRIILLGRNHGKG 145 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-----~~~i~vi~~~~~~Gk~ 145 (335)
++|+-|. +.|.-+++.+.+ ..--+|+++.... ..+.+++..+.++ ...+.+....+..|-+
T Consensus 25 Llpv~g~-pli~~~l~~l~~----------~g~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~ 90 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEK----------AGFEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTA 90 (214)
T ss_pred cCEECCe-eHHHHHHHHHHH----------CCCCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChH
Confidence 5666565 677777777765 2235777776521 1222333333321 1123333344568899
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
.++..+.....++ ++++.+|... +..+..+++.+...
T Consensus 91 ~al~~~~~~i~~d-~lv~~~D~i~-~~~l~~~l~~h~~~ 127 (214)
T cd04198 91 DSLRHIRKKIKKD-FLVLSCDLIT-DLPLIELVDLHRSH 127 (214)
T ss_pred HHHHHHHhhcCCC-EEEEeCcccc-ccCHHHHHHHHhcc
Confidence 9999999887555 7788899654 45567777766543
No 176
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=75.93 E-value=17 Score=34.95 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=61.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. +.|..+|+++.+. .-+|+++.+... +.+.+.... .+.++..++..|.+.++..
T Consensus 22 l~~v~gk-pli~~~l~~l~~~-----------~~~i~vv~~~~~----~~i~~~~~~----~~~~~~~~~~~g~~~ai~~ 81 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKV-----------AQKVGVVLGHEA----ELVKKLLPE----WVKIFLQEEQLGTAHAVMC 81 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhc-----------CCcEEEEeCCCH----HHHHHhccc----ccEEEecCCCCChHHHHHH
Confidence 5676554 7777777766651 136666654222 223332211 3555655566788999999
Q ss_pred HHHhcC-CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~-~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
++.... .|.++++++|. .+.+..+.++++.+.+
T Consensus 82 a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 82 ARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred HHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 988764 58999999998 4677888999887754
No 177
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=75.12 E-value=24 Score=33.31 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
+....+..+++.+.+ ...--+|++|.+.. ..+..+.....+. .+.++. ...+...++..|++..
T Consensus 31 ~GkPll~~tl~~l~~---------~~~i~~IvVVv~~~---~~~~~~~~~~~~~--~v~~v~--gG~~r~~SV~~gL~~l 94 (378)
T PRK09382 31 GGKPLWLHVLENLSS---------APAFKEIVVVIHPD---DIAYMKKALPEIK--FVTLVT--GGATRQESVRNALEAL 94 (378)
T ss_pred CCeeHHHHHHHHHhc---------CCCCCeEEEEeChH---HHHHHHHhcccCC--eEEEeC--CCchHHHHHHHHHHhc
Confidence 455677777777655 12124677775422 2233333322221 233332 2244677888999888
Q ss_pred CCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 156 RGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 156 ~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
..|++++.|+|.. ++++.+.++++.+.+
T Consensus 95 ~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 95 DSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred CCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 7799999999974 588999999988754
No 178
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=74.96 E-value=32 Score=30.16 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHhcCC-CEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 141 NHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~-d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|.++++..+...... +.++++++|...+.+. ..+++....
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~ 143 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRS 143 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence 35578888888888765 8899999999887665 788875543
No 179
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=73.45 E-value=48 Score=30.11 Aligned_cols=102 Identities=10% Similarity=0.081 Sum_probs=61.0
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHH-------------------HHHH-cCC
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-------------------FVRK-YTV 130 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-------------------~~~~-~~~ 130 (335)
++|+.+. +.|...|+.+.. ..--+|+++.....+.-.+.+.. .... .+.
T Consensus 28 LvpV~gk-PiI~~vl~~l~~----------~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (297)
T TIGR01105 28 MLPIVDK-PMIQYIVDEIVA----------AGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPG 96 (297)
T ss_pred eeEECCE-EHHHHHHHHHHH----------CCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCC
Confidence 6777664 466666666655 22457777776443332222211 0000 112
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCc-------chHHHHHHHHHH
Q 019818 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKV-------TDLEKLESQIHA 183 (335)
Q Consensus 131 ~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~-------~~l~~l~~~~~~ 183 (335)
.++.++..++..|-++|+..+......+-++++-+|...++ -.+.++++...+
T Consensus 97 ~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~ 156 (297)
T TIGR01105 97 VTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNE 156 (297)
T ss_pred ceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHH
Confidence 25777777778999999999998875433444458877654 277788876643
No 180
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=73.34 E-value=58 Score=28.31 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=55.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CCC-
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NHG- 143 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~~G- 143 (335)
|+-+|-+|+.. .+.++.++..++. +.+.=+|-||-.+++...+.++++...++ ++.++.... ..|
T Consensus 1 iAylil~h~~~---~~~~~~l~~~l~~------~~~~f~iHiD~k~~~~~~~~~~~~~~~~~--nv~~v~~r~~v~WG~~ 69 (244)
T PF02485_consen 1 IAYLILAHKND---PEQLERLLRLLYH------PDNDFYIHIDKKSPDYFYEEIKKLISCFP--NVHFVPKRVDVRWGGF 69 (244)
T ss_dssp EEEEEEESS-----HHHHHHHHHHH--------TTSEEEEEE-TTS-HHHHHHHHHHHCT-T--TEEE-SS-----TTSH
T ss_pred CEEEEEecCCC---HHHHHHHHHHhcC------CCCEEEEEEcCCCChHHHHHHHHhcccCC--ceeecccccccccCCc
Confidence 35577887744 5555666665542 33455666887777777777777777777 787776332 223
Q ss_pred -hHHH----HHHHHH-hcCCCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 144 -KGEA----IRKGML-HSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 144 -k~~a----ln~g~~-~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
...| +..+++ ...-++++.+.+++.+ -....++.+.|+.+
T Consensus 70 S~v~A~l~ll~~al~~~~~~~y~~llSg~D~P-l~s~~~i~~~l~~~ 115 (244)
T PF02485_consen 70 SLVEATLNLLREALKRDGDWDYFILLSGQDYP-LKSNEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHHHHHHHH-S---EEEEEETTEEE-SS-HHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEccccccc-ccchHHHHHHHHhc
Confidence 3333 344444 2356888888777743 22335566666665
No 181
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=71.75 E-value=69 Score=28.00 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=62.3
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHh
Q 019818 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLH 154 (335)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~ 154 (335)
+++...++.+|+.++. .+.--+|+|+.+...+...+.+.+ ....+ ++.++.- ...+......|++.
T Consensus 29 l~g~pll~~tl~~f~~---------~~~i~~Ivvv~~~~~~~~~~~~~~-~~~~~--~v~~v~G--G~~R~~SV~~gL~~ 94 (230)
T COG1211 29 LGGRPLLEHTLEAFLE---------SPAIDEIVVVVSPEDDPYFEKLPK-LSADK--RVEVVKG--GATRQESVYNGLQA 94 (230)
T ss_pred ECCEEehHHHHHHHHh---------CcCCCeEEEEEChhhhHHHHHhhh-hccCC--eEEEecC--CccHHHHHHHHHHH
Confidence 3566788888888877 333578888887656655544332 11112 4555542 34577788888888
Q ss_pred cC---CCEEEEEeCCCC-CCcchHHHHHHHH
Q 019818 155 SR---GELLLMLDADGA-TKVTDLEKLESQI 181 (335)
Q Consensus 155 a~---~d~v~~~DaD~~-~~~~~l~~l~~~~ 181 (335)
.. .++|++-|+==. ++++.+.+++...
T Consensus 95 ~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~ 125 (230)
T COG1211 95 LSKYDSDWVLVHDAARPFLTPKLIKRLIELA 125 (230)
T ss_pred hhccCCCEEEEeccccCCCCHHHHHHHHHhh
Confidence 77 799999988654 5888899988433
No 182
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=71.30 E-value=31 Score=30.11 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=47.4
Q ss_pred CceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC--------CC----hHHHHHHHHHhc-CCCEEEEEeCCCC
Q 019818 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN--------HG----KGEAIRKGMLHS-RGELLLMLDADGA 168 (335)
Q Consensus 102 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~--------~G----k~~aln~g~~~a-~~d~v~~~DaD~~ 168 (335)
.++.++++.++-++...+.++++..... ..++++..+.. .+ ...+.-...... ..+-++++|+|..
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~~~-~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~l 107 (248)
T cd04194 29 RDYDFYILNDDISEENKKKLKELLKKYN-SSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADII 107 (248)
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEE
Confidence 4799999999888888988888876532 35666555321 01 111122222222 3688999999997
Q ss_pred CCcchHHHHHH
Q 019818 169 TKVTDLEKLES 179 (335)
Q Consensus 169 ~~~~~l~~l~~ 179 (335)
+-. .+..+.+
T Consensus 108 v~~-di~~L~~ 117 (248)
T cd04194 108 VLG-DLSELFD 117 (248)
T ss_pred ecC-CHHHHhc
Confidence 764 4555554
No 183
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=70.03 E-value=63 Score=28.03 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=59.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
+..+.|..+|+.+.+ ...--+|+++... +-.+.++++..+ . .+.++.-. ..+......|++..
T Consensus 26 ~Gkpvl~~tl~~f~~---------~~~i~~Ivvv~~~---~~~~~~~~~~~~-~--~v~iv~GG--~tR~~SV~ngL~~l 88 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLA---------SPEIDEIVVVVPP---EDIDYVEELLSK-K--KVKIVEGG--ATRQESVYNGLKAL 88 (221)
T ss_dssp TTEEHHHHHHHHHHT---------TTTESEEEEEESG---GGHHHHHHHHHH-T--TEEEEE----SSHHHHHHHHHHCH
T ss_pred CCeEeHHHHHHHHhc---------CCCCCeEEEEecc---hhHHHHHHhhcC-C--CEEEecCC--hhHHHHHHHHHHHH
Confidence 455677777777765 3445677777653 333445555444 3 67777532 34677788888875
Q ss_pred CC--CEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 156 RG--ELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 156 ~~--d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
.+ |+|++=|+== -++++.+.++++.+.+
T Consensus 89 ~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 89 AEDCDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp HCTSSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred HcCCCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 43 6999988765 4588999999999876
No 184
>PLN02248 cellulose synthase-like protein
Probab=69.76 E-value=25 Score=37.61 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=43.4
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV 125 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~ 125 (335)
.+.|.|.|.|.+-+..++ ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.+
T Consensus 364 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKLacYvSDDGgS~LTf~AL~EAa 424 (1135)
T PLN02248 364 SDLPGIDVFVSTADPEKEPPLVTANTILSILAA------DYPVEKLACYLSDDGGALLTFEAMAEAA 424 (1135)
T ss_pred ccCCcceeEeecCCCccCcchHHHHHHHHHhcc------cccccceeEEEecCCchHHHHHHHHHHH
Confidence 358999999999665443 33455555553 5788999999999999999998887743
No 185
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=69.62 E-value=24 Score=34.06 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=58.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+ ...|+.+++.+.. ...-+++++..... +.+++.... .++.++..++..|-+.++..
T Consensus 27 l~~i~g-kpli~~~i~~l~~----------~gi~~i~vv~~~~~----~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~ 88 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANE----------LGAQHVHLVYGHGG----DLLKQTLAD---EPLNWVLQAEQLGTGHAMQQ 88 (456)
T ss_pred cceeCC-hhHHHHHHHHHHh----------cCCCcEEEEECCCH----HHHHHhhcc---CCcEEEECCCCCCcHHHHHH
Confidence 455544 4556666666644 12346776665221 222222221 15677766666788899998
Q ss_pred HHHhcC-CCEEEEEeCCC-CCCcchHHHHHHHH
Q 019818 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQI 181 (335)
Q Consensus 151 g~~~a~-~d~v~~~DaD~-~~~~~~l~~l~~~~ 181 (335)
++.... .+.++++++|. .+.++.+.++++..
T Consensus 89 a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~ 121 (456)
T PRK09451 89 AAPFFADDEDILMLYGDVPLISVETLQRLRDAK 121 (456)
T ss_pred HHHhhccCCcEEEEeCCcccCCHHHHHHHHHHh
Confidence 887764 47899999998 46778888887654
No 186
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=69.36 E-value=43 Score=29.58 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--C---C--CCh--HH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--R---N--HGK--GE 146 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~---~--~Gk--~~ 146 (335)
+....+..++.|++.. +..++.++|++|+-+++..+.++++..+++. .+.++... . . .+. ..
T Consensus 11 ~y~~~~~v~l~Sll~n--------n~~~~~fyil~~~is~e~~~~l~~~~~~~~~-~i~~i~i~~~~~~~~~~~~~~~~~ 81 (248)
T cd06432 11 LYERFLRIMMLSVMKN--------TKSPVKFWFIKNFLSPQFKEFLPEMAKEYGF-EYELVTYKWPRWLHKQTEKQRIIW 81 (248)
T ss_pred HHHHHHHHHHHHHHHc--------CCCCEEEEEEeCCCCHHHHHHHHHHHHHhCC-ceEEEEecChhhhhcccccchhHH
Confidence 3344556677777662 3457999999999999999999999888753 45555443 1 0 111 11
Q ss_pred HHH-HHHH-hc--CCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 147 AIR-KGML-HS--RGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 147 aln-~g~~-~a--~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
+.. ..+. .- .-|-++.+|+|..+. +.|.+|.+.
T Consensus 82 ~y~rL~~~~lLP~~vdkvLYLD~Dilv~-~dL~eL~~~ 118 (248)
T cd06432 82 GYKILFLDVLFPLNVDKVIFVDADQIVR-TDLKELMDM 118 (248)
T ss_pred HHHHHHHHHhhhhccCEEEEEcCCceec-ccHHHHHhc
Confidence 111 1112 11 348899999999776 667777753
No 187
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=69.25 E-value=22 Score=32.55 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=57.7
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch-HHHHHHH-HHHcCCCcEEEEEcCCCCC------hHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDF-VRKYTVDNVRIILLGRNHG------KGEA 147 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~-~~~~~~~~i~vi~~~~~~G------k~~a 147 (335)
.++....+|++++.. ..+..|||+..=..+|-+ .+. .++ ..+.|+..+.........| --.+
T Consensus 17 ~~~~~t~~~l~siR~---------~~P~A~IILSTW~~~d~~~l~~-D~vv~s~DPG~~~~~~~~~~~~~~~NiNrQi~S 86 (311)
T PF07507_consen 17 QEPDITKNCLASIRK---------HFPGAEIILSTWEGQDISGLDY-DQVVISDDPGSNVVLYKKDGKPGPNNINRQIVS 86 (311)
T ss_pred ccchhHHHHHHHHHH---------hCCCCEEEEECCCCCCcccCCc-ceEEecCCCCcceeeccCCCCCcccchhHHHHH
Confidence 456667788888877 566789998543222211 110 111 1233422222121111122 1234
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
-.+|+++++.+|++=+=+|..+..+.+.++.+.+..
T Consensus 87 t~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~ 122 (311)
T PF07507_consen 87 TLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKYPD 122 (311)
T ss_pred HHHHHHHhCCceEEEEcccccccchHHHHHHHHhcc
Confidence 468999999999999999999988877777776654
No 188
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=68.07 E-value=64 Score=29.87 Aligned_cols=106 Identities=18% Similarity=0.121 Sum_probs=65.5
Q ss_pred ceEEEEEec-cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC----
Q 019818 66 KYISLIIPA-FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---- 140 (335)
Q Consensus 66 ~~vsViip~-~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---- 140 (335)
..+.|+..+ .|=...+.-++.|++.. .+...+.+.|++|+-+++..+.++++...++. ++.++....
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~n-------n~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~-~i~~~~id~~~~~ 95 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLN-------NPDKSLVFHVFTDYISDADKQRFSALAKQYNT-RINIYLINCERLK 95 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHh-------CCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCC-eEEEEEeCHHHHh
Confidence 457777777 22244455556666542 23446899999999999999999998887752 566554421
Q ss_pred ------CCChHHHHHHHH-Hhc--CCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 141 ------NHGKGEAIRKGM-LHS--RGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 141 ------~~Gk~~aln~g~-~~a--~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
+..++.=...-+ +.- .-|-|+.+|+|..+.. .|.+|.+.
T Consensus 96 ~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~~ 143 (334)
T PRK15171 96 SLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELIDL 143 (334)
T ss_pred CCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHhc
Confidence 111211111112 222 3689999999998764 56666644
No 189
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=67.76 E-value=66 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 140 ~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
+..|-++|+..+......+.++++++|...+ ..+..+++...+
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~ 143 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRK 143 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHH
Confidence 3467788998888877667788999998764 456677765543
No 190
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=67.55 E-value=69 Score=31.22 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=55.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+....|..+++.+... ..-+++||.+. .-...+++....+.....+++..+...|-+.|+..
T Consensus 26 ~l~l~g~~~ll~~tl~~l~~~----------~~~~iviv~~~---~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~ 92 (468)
T TIGR01479 26 FLALVGDLTMLQQTLKRLAGL----------PCSSPLVICNE---EHRFIVAEQLREIGKLASNIILEPVGRNTAPAIAL 92 (468)
T ss_pred eeEcCCCCcHHHHHHHHHhcC----------CCcCcEEecCH---HHHHHHHHHHHHcCCCcceEEecccccCchHHHHH
Confidence 456656666677777776541 13466666542 11222333323332112456666666777666555
Q ss_pred HHHhc----C-CCEEEEEeCCCCCC-cchHHHHHHHH
Q 019818 151 GMLHS----R-GELLLMLDADGATK-VTDLEKLESQI 181 (335)
Q Consensus 151 g~~~a----~-~d~v~~~DaD~~~~-~~~l~~l~~~~ 181 (335)
+.... . .++++++-+|..+. ++.+.++++..
T Consensus 93 aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 93 AALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 44433 2 46899999997654 45677777654
No 191
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=67.47 E-value=47 Score=28.10 Aligned_cols=93 Identities=10% Similarity=0.241 Sum_probs=55.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-CChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN-HGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~-~Gk~~aln~g~~~ 154 (335)
+..+.|..+++.+.+ ...--+|+|..| +++-.+++++. . +.++..++. ..-......++.+
T Consensus 22 ~gkpLi~~~i~~a~~---------s~~~d~IvVaTd--~~~i~~~~~~~----g---~~v~~~~~~~~~~~~r~~~~~~~ 83 (217)
T PF02348_consen 22 GGKPLIEYVIERAKQ---------SKLIDEIVVATD--DEEIDDIAEEY----G---AKVIFRRGSLADDTDRFIEAIKH 83 (217)
T ss_dssp TTEEHHHHHHHHHHH---------TTTTSEEEEEES--SHHHHHHHHHT----T---SEEEE--TTSSSHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHh---------CCCCCeEEEeCC--CHHHHHHHHHc----C---CeeEEcChhhcCCcccHHHHHHH
Confidence 444566777777765 233456777665 33344444444 2 333433332 3333445566666
Q ss_pred cCCC---EEEEEeCCCC-CCcchHHHHHHHHHHhcc
Q 019818 155 SRGE---LLLMLDADGA-TKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 155 a~~d---~v~~~DaD~~-~~~~~l~~l~~~~~~~~~ 186 (335)
...+ +++.+.+|+. ++|..+.++++.+.++..
T Consensus 84 ~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 84 FLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp HTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred hhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 6666 9999999996 599999999999988643
No 192
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=66.70 E-value=7.7 Score=35.70 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
.-+|.|+..++.++++++|.|..+.++.-..+.+.....
T Consensus 117 ~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~ 155 (317)
T PF13896_consen 117 LLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRN 155 (317)
T ss_pred HHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhh
Confidence 457999999999999999999999999888887776544
No 193
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=65.66 E-value=36 Score=31.73 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=39.8
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
+.+.|||=++|..+.|...|+|+.+.- .-...-+|+.-|.-+++.-++++.+
T Consensus 31 ~~~vivvqVH~r~~yl~~li~sL~~~~-------~I~~~llifSHd~~~~ein~~v~~I 82 (356)
T PF05060_consen 31 DSIVIVVQVHNRPEYLKLLIDSLSQAR-------GIEEALLIFSHDFYSEEINDLVQSI 82 (356)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHhh-------CccceEEEEeccCChHHHHHHHHhC
Confidence 569999999999999999999987741 2335667777777777777777653
No 194
>PRK10122 GalU regulator GalF; Provisional
Probab=65.06 E-value=91 Score=28.28 Aligned_cols=101 Identities=12% Similarity=0.166 Sum_probs=60.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHH-------------------HHHHHc-CC
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAF-------------------DFVRKY-TV 130 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~-------------------~~~~~~-~~ 130 (335)
++|+-+. +.|...++++.+ ..--+|+++..-..+...+.+. .+.... +.
T Consensus 28 llpi~gk-piI~~~l~~l~~----------~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~ 96 (297)
T PRK10122 28 MLPIVDK-PMIQYIVDEIVA----------AGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPG 96 (297)
T ss_pred eeEECCE-EHHHHHHHHHHH----------CCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCC
Confidence 6777665 777777777765 2235777775433222222221 000111 22
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHhcC-CCEEEEEeCCCCCCcc-------hHHHHHHHHHH
Q 019818 131 DNVRIILLGRNHGKGEAIRKGMLHSR-GELLLMLDADGATKVT-------DLEKLESQIHA 183 (335)
Q Consensus 131 ~~i~vi~~~~~~Gk~~aln~g~~~a~-~d~v~~~DaD~~~~~~-------~l~~l~~~~~~ 183 (335)
.++.++..++..|-++|+..+..... .+++++. +|...+++ .+..+++...+
T Consensus 97 ~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 97 VTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred ceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHH
Confidence 25677777778999999999998874 4566555 88877543 57888876644
No 195
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=64.69 E-value=8.4 Score=34.57 Aligned_cols=101 Identities=9% Similarity=0.133 Sum_probs=56.6
Q ss_pred CCceEEEEEec-cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEE-EECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 019818 64 AEKYISLIIPA-FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLI-IDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (335)
Q Consensus 64 ~~~~vsViip~-~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~ 141 (335)
..++.-+.+++ ++.-+.+...+... ..++.|++ .=||..|+=.+. + ..+ .-|+|... +
T Consensus 39 ~~~k~Lla~~VG~kqk~~vd~~v~Kf------------~~nF~i~LfhYDg~vd~w~~~-~-ws~----~aiHv~~~--k 98 (294)
T PF05212_consen 39 KKPKYLLAMTVGIKQKDNVDAIVKKF------------SDNFDIMLFHYDGRVDEWDDF-E-WSD----RAIHVSAR--K 98 (294)
T ss_pred CCCceEEEEEecHHHHhhhhHHHhhh------------ccCceEEEEEecCCcCchhhc-c-ccc----ceEEEEec--c
Confidence 34567777777 66654444444433 22566655 557766653221 1 111 12444332 2
Q ss_pred CChHHHHHHHH---HhcCCCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 142 HGKGEAIRKGM---LHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 142 ~Gk~~aln~g~---~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
+.|---...-+ -.+..|||.+.|.|..++...+.++++-+.+.
T Consensus 99 qtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~ 144 (294)
T PF05212_consen 99 QTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKE 144 (294)
T ss_pred ceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHh
Confidence 22221111111 12468999999999999999999999888764
No 196
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=64.58 E-value=98 Score=30.30 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=55.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|..++...|..+++.+.. .. .-+.++|.+ +.-...+++-....+....+++..|..++-+.|+..
T Consensus 31 ~l~l~~~~sllq~t~~r~~~---------~~-~~~~iivt~---~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaial 97 (478)
T PRK15460 31 FLCLKGDLTMLQTTICRLNG---------VE-CESPVVICN---EQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIAL 97 (478)
T ss_pred eeECCCCCCHHHHHHHHHHh---------CC-CCCcEEEeC---HHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHH
Confidence 57887777888888887655 11 224445543 233334443333333111356666666666666555
Q ss_pred HHHhc--C----CCEEEEEeCCCCCCcc--hHHHHHHHHH
Q 019818 151 GMLHS--R----GELLLMLDADGATKVT--DLEKLESQIH 182 (335)
Q Consensus 151 g~~~a--~----~d~v~~~DaD~~~~~~--~l~~l~~~~~ 182 (335)
|...+ + ...++++-||-.+.+. +...+.+.+.
T Consensus 98 aa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~ 137 (478)
T PRK15460 98 AALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMP 137 (478)
T ss_pred HHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHH
Confidence 44443 1 2589999999876543 3444444443
No 197
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=63.77 E-value=17 Score=31.12 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=37.1
Q ss_pred ceEEEEEECCCCcc--hHHHHHHHHHHcCCCcEEEEEcCCCC---------Ch---HHHHHHHHHhcC-------CCEEE
Q 019818 103 TYEVLIIDDGSSDG--TKRVAFDFVRKYTVDNVRIILLGRNH---------GK---GEAIRKGMLHSR-------GELLL 161 (335)
Q Consensus 103 ~~eiivvdd~s~d~--t~~~~~~~~~~~~~~~i~vi~~~~~~---------Gk---~~aln~g~~~a~-------~d~v~ 161 (335)
++.-|||+|+..-. +.+++++. ++.+.+..... .+ ...+|.|++..+ .-+|.
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~~s-------gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVy 82 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLRRS-------GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVY 82 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHHHH-------TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHc-------CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEE
Confidence 79999999975432 34444443 33343332111 12 347899998765 25677
Q ss_pred EEeCCCCCCcchHHH
Q 019818 162 MLDADGATKVTDLEK 176 (335)
Q Consensus 162 ~~DaD~~~~~~~l~~ 176 (335)
|.|+|...+.+..++
T Consensus 83 FaDDdNtYdl~LF~e 97 (207)
T PF03360_consen 83 FADDDNTYDLRLFDE 97 (207)
T ss_dssp E--TTSEE-HHHHHH
T ss_pred ECCCCCeeeHHHHHH
Confidence 889999877666665
No 198
>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]
Probab=63.54 E-value=36 Score=29.44 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=86.0
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
++..++.|++|.++.-+.+-+.+.-+...+.. ..-.-.|+|++. .|. . +.
T Consensus 71 aS~HklavlVPfRdRfEELl~FvPHM~~FL~r-----q~v~HHI~vlNQ--vD~----------------f-------RF 120 (310)
T KOG3917|consen 71 ASYHKLAVLVPFRDRFEELLEFVPHMSKFLHR-----QNVSHHILVLNQ--VDP----------------F-------RF 120 (310)
T ss_pred ccceeEEEEechHHHHHHHHHhhHHHHHHHhh-----cCcceEEEEeec--cCc----------------c-------ee
Confidence 45678999999988766666655555554443 233344555442 110 1 23
Q ss_pred ChHHHHHHHHHhcC--CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 143 GKGEAIRKGMLHSR--GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 143 Gk~~aln~g~~~a~--~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
.+++-+|.|+..|+ .|||++-|.|..+-.+.|.. -| +.. .++.-+.+...+
T Consensus 121 NRAsLINVGf~eas~~~DYiaMhDVDLLPlN~el~Y---~f---P~~-----------------~gp~HiasP~lH---- 173 (310)
T KOG3917|consen 121 NRASLINVGFNEASRLCDYIAMHDVDLLPLNPELPY---DF---PGI-----------------GGPRHIASPQLH---- 173 (310)
T ss_pred chhhheecchhhhcchhceeeecccccccCCCCCCC---CC---Ccc-----------------CCcccccCcccC----
Confidence 46667788888875 59999999998653322211 01 110 011222222221
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh-hhcccc-chHHHHHHhHHcCCCEEEe
Q 019818 221 ALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI-RLKRWC-FDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~-~~~~~~-~D~el~~r~~~~G~~i~~~ 295 (335)
..+.. ....||..+.+++-++.+.+.. ...+|+ +|-||-.|+..+|..+...
T Consensus 174 ----PkYHY-------------------~~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRp 227 (310)
T KOG3917|consen 174 ----PKYHY-------------------EKFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRP 227 (310)
T ss_pred ----chhhh-------------------hhhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEecc
Confidence 01100 0135677789999998883221 112332 4889999999999777654
No 199
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=63.44 E-value=42 Score=32.06 Aligned_cols=162 Identities=14% Similarity=0.195 Sum_probs=91.2
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc-CC-C-EEEEEeCCCCC-CcchHHHHH
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS-RG-E-LLLMLDADGAT-KVTDLEKLE 178 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a-~~-d-~v~~~DaD~~~-~~~~l~~l~ 178 (335)
+-++++|-....+...+.+ .+.+ .+.++...+..|-+.|...+...- .+ + .++++.+|..+ .++.|+.|+
T Consensus 45 ~~~i~vVvGh~ae~V~~~~----~~~~--~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~ 118 (460)
T COG1207 45 PDDIVVVVGHGAEQVREAL----AERD--DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELL 118 (460)
T ss_pred cceEEEEEcCCHHHHHHHh----cccc--CceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHH
Confidence 3456655554444333322 2222 478888888899999999999887 33 3 68999999964 888888777
Q ss_pred HHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhHHHHHHHHHHH-------HHHHhCCCCccC
Q 019818 179 SQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLV-------VILTAGPGIRDT 251 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 251 (335)
+.-....... .++......+ .-|-++....-... ...-....+...
T Consensus 119 ~~~~~~~~~~--------------------tvLt~~~~dP-------~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~ei 171 (460)
T COG1207 119 AAHPAHGAAA--------------------TVLTAELDDP-------TGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEI 171 (460)
T ss_pred HhhhhcCCce--------------------EEEEEEcCCC-------CCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEE
Confidence 7665333221 1111111000 00000000000000 000001233446
Q ss_pred CCceeeeeHHHHHHhhhh---hhhccccchHHHHHHhHHcCCCEEEeee
Q 019818 252 QCGFKMFTRAAARKLFTN---IRLKRWCFDVELVYLCKRFGIPIIEISV 297 (335)
Q Consensus 252 ~~g~~~~~r~~l~~i~~~---~~~~~~~~D~el~~r~~~~G~~i~~~p~ 297 (335)
.+|..+|..+.|.+.+.. .+..+-.|=.|+...+...|.++..+-.
T Consensus 172 NtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~ 220 (460)
T COG1207 172 NTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHV 220 (460)
T ss_pred eeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEec
Confidence 788889998888777443 3344445678899999999988877644
No 200
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=63.37 E-value=63 Score=29.00 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCC--cchHHHHHHHHHHh
Q 019818 130 VDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK--VTDLEKLESQIHAV 184 (335)
Q Consensus 130 ~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~--~~~l~~l~~~~~~~ 184 (335)
..++.+++.++..|.+.|...|=.....|-++++=+|+.+. +..+..|++.+++-
T Consensus 96 ~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~ 152 (291)
T COG1210 96 LVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEET 152 (291)
T ss_pred CceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHh
Confidence 34788899999999999999999998887555555666554 67899999988764
No 201
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=62.52 E-value=98 Score=28.17 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=60.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH-------H--------HH-----cCC
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF-------V--------RK-----YTV 130 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~-------~--------~~-----~~~ 130 (335)
++|+-+. +.|..+|+++.+. .--+|+|+..-..+...+.+..- . .+ .|.
T Consensus 33 l~pv~g~-pii~~~l~~l~~~----------gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~ 101 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIAA----------GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPH 101 (302)
T ss_pred eeEECCE-EHHHHHHHHHHHC----------CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccC
Confidence 6677665 7777777777662 23567777664443333333210 0 00 011
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCC-------cchHHHHHHHHHH
Q 019818 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK-------VTDLEKLESQIHA 183 (335)
Q Consensus 131 ~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~-------~~~l~~l~~~~~~ 183 (335)
..+.........|-+.|+..+......+-++++.+|...+ ...+..+++...+
T Consensus 102 ~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~ 161 (302)
T PRK13389 102 VTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDE 161 (302)
T ss_pred ceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHh
Confidence 1344444455688999988887776445567778888764 3678888876644
No 202
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=62.05 E-value=86 Score=26.65 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=56.3
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC---CCcEEEEEcCCCCChHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT---VDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~i~vi~~~~~~Gk~~a 147 (335)
++|+-|. ..|.-.|+.+.+ ..--+|+++.+...+...+.+.+...... ...+.++..++..|-+.|
T Consensus 25 llpi~g~-piI~~~l~~l~~----------~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~a 93 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLAL----------NGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA 93 (217)
T ss_pred eeEECCE-ehHHHHHHHHHH----------CCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCccchH
Confidence 6777776 577777777766 23457877776444333333332211100 013566665555666666
Q ss_pred HHHHHHhc-CCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 148 IRKGMLHS-RGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 148 ln~g~~~a-~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
+....... -.+.++++.+|...+ ..+..+++...+
T Consensus 94 l~~~~~~~~~~~~flv~~gD~i~~-~dl~~~l~~h~~ 129 (217)
T cd04197 94 LRDLDAKGLIRGDFILVSGDVVSN-IDLKEILEEHKE 129 (217)
T ss_pred HHHHhhccccCCCEEEEeCCeeec-cCHHHHHHHHHH
Confidence 54322211 134467899998765 447777877655
No 203
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=61.21 E-value=83 Score=27.43 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=55.3
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC--ChH---------
Q 019818 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH--GKG--------- 145 (335)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~--Gk~--------- 145 (335)
-...+.-++.|++.. ...++.++|++|+-+++..+.++++...+. ..+.++...... .+.
T Consensus 12 y~~~~~v~i~Sl~~~--------~~~~~~~~il~~~is~~~~~~L~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~ 82 (246)
T cd00505 12 YLRGAIVLMKSVLRH--------RTKPLRFHVLTNPLSDTFKAALDNLRKLYN-FNYELIPVDILDSVDSEHLKRPIKIV 82 (246)
T ss_pred hhHHHHHHHHHHHHh--------CCCCeEEEEEEccccHHHHHHHHHHHhccC-ceEEEEeccccCcchhhhhcCccccc
Confidence 344445555566552 233799999999988888888887755432 246666553211 010
Q ss_pred -HHHHHHHHhc-CCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 146 -EAIRKGMLHS-RGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 146 -~aln~g~~~a-~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
..+-...+.. .-+-|+++|+|..+- +.+.+|.+.
T Consensus 83 ~y~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 83 TLTKLHLPNLVPDYDKILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred eeHHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhhc
Confidence 0111111112 368899999999876 456666654
No 204
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=61.03 E-value=1.3e+02 Score=27.44 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=59.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CCcchHHHHHHHHHHcCC-C--cEEEEEcCCCC-
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG-SSDGTKRVAFDFVRKYTV-D--NVRIILLGRNH- 142 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~-~--~i~vi~~~~~~- 142 (335)
++||....+ .+.+..+|.|++. ....++++.|+.|. ..+...+.++++...+.. . .+..+..|...
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~--------~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~ 73 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIV--------FSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNA 73 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHH--------hCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccch
Confidence 677777666 3444555555544 14457899888887 666667778887554321 1 23333333211
Q ss_pred -C-----hHHH-HHHHHHh-c-CCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 143 -G-----KGEA-IRKGMLH-S-RGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 143 -G-----k~~a-ln~g~~~-a-~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
+ |..+ ...-+.. - .-|-++.+|+|.... +.|.++.+.+.+
T Consensus 74 ~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~-~dI~eL~~~~~d 122 (304)
T cd06430 74 AEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFL-RPVEEIWSFLKK 122 (304)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeec-CCHHHHHHHHhh
Confidence 1 1111 1111111 1 348999999999775 457778876644
No 205
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=60.53 E-value=12 Score=35.19 Aligned_cols=107 Identities=16% Similarity=0.040 Sum_probs=64.9
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCC--cEEEEEcCCC--
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVD--NVRIILLGRN-- 141 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~--~i~vi~~~~~-- 141 (335)
|.|-+.+-++|-+..++-.+..+-++ |++....-|.+-.|.+.|++.+.+++..+..... .|.+-...+.
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~------Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s 76 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEG------DYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKS 76 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhcc------CCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccc
Confidence 44666666778777777666544442 2455667788889999999999999987654321 3333322221
Q ss_pred ----CC--------h---HHHHHHHHHhc---CCCEEEEEeCCCCC-CcchHHHHH
Q 019818 142 ----HG--------K---GEAIRKGMLHS---RGELLLMLDADGAT-KVTDLEKLE 178 (335)
Q Consensus 142 ----~G--------k---~~aln~g~~~a---~~d~v~~~DaD~~~-~~~~l~~l~ 178 (335)
.| + ..-...++..+ ..||+++.|.|+.+ .++.|.-++
T Consensus 77 ~~d~~~pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm 132 (568)
T KOG4179|consen 77 YPDEHGPKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLM 132 (568)
T ss_pred cCcccCCccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHH
Confidence 11 0 01112333333 35999999999987 455555444
No 206
>PHA01631 hypothetical protein
Probab=59.17 E-value=12 Score=30.49 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=39.2
Q ss_pred CceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC-----ChHHHHHHHHHh---cCCCEEEEEeCCCCCCcc
Q 019818 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH-----GKGEAIRKGMLH---SRGELLLMLDADGATKVT 172 (335)
Q Consensus 102 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~-----Gk~~aln~g~~~---a~~d~v~~~DaD~~~~~~ 172 (335)
-+++.++|||.-.+-|.-.+++- ...+++...|. -.+..+...+.. ..-|+++++|+|..+++-
T Consensus 16 ~~~D~V~VD~~~~~~~~c~~~~~-------~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 16 LDFDYVVVDKTFNDMTECQIPKY-------QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred ccccEEEEccccccccccccccc-------CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 36899999997665443221111 33455554432 244456666443 456888999999988765
No 207
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=54.98 E-value=1.2e+02 Score=25.17 Aligned_cols=81 Identities=17% Similarity=0.104 Sum_probs=45.6
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCCCc-EEEEEcCCCCChHHHHHHHHHhc--CC-CEEEEEeCCCCCCcchHHH
Q 019818 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDN-VRIILLGRNHGKGEAIRKGMLHS--RG-ELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~-i~vi~~~~~~Gk~~aln~g~~~a--~~-d~v~~~DaD~~~~~~~l~~ 176 (335)
..++|++=-.||.+....+............. -+.+ .+...|-..+-...++.+ ++ ++++++-+|..+.+++.+.
T Consensus 27 ~~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~l-t~gEiGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~~~f~~~ 105 (200)
T PF01755_consen 27 GINFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPL-TPGEIGCALSHIKAWQRIVDSGLEYALILEDDVIFDPDFKEF 105 (200)
T ss_pred CCceEEEEeecccccchHHHHHHhhhhhhhccccccC-CcceEeehhhHHHHHHHHHHcCCCeEEEEeccccccccHHHH
Confidence 55799998888877666333333321111000 0111 122355444444444443 34 9999999999999886655
Q ss_pred HHHHHH
Q 019818 177 LESQIH 182 (335)
Q Consensus 177 l~~~~~ 182 (335)
+.....
T Consensus 106 l~~~~~ 111 (200)
T PF01755_consen 106 LEEILS 111 (200)
T ss_pred HHHHHh
Confidence 544443
No 208
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=54.96 E-value=69 Score=26.30 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=35.9
Q ss_pred EEEEEcC-CCCChHHHHHHHHHhc---CCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 133 VRIILLG-RNHGKGEAIRKGMLHS---RGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 133 i~vi~~~-~~~Gk~~aln~g~~~a---~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
++++... +..|...++-.|++.+ ..|+++++=+|.. ++++.+.++++...+
T Consensus 47 ~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 47 APVLRDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCEeccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 4555432 2356667677677654 5799999999996 488889898887643
No 209
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=54.44 E-value=61 Score=30.41 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=54.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~g~~~ 154 (335)
+....|..+++.+... .-+|+|+.+.+.. +... . . ++.++.... ..|..+++..|++.
T Consensus 198 ~Gk~ll~~~l~~l~~~-----------~~~vvV~~~~~~~---~~~~----~-~--~v~~i~d~~~~~Gpl~gi~~al~~ 256 (369)
T PRK14490 198 HESNQLVHTAALLRPH-----------CQEVFISCRAEQA---EQYR----S-F--GIPLITDSYLDIGPLGGLLSAQRH 256 (369)
T ss_pred CCccHHHHHHHHHHhh-----------CCEEEEEeCCchh---hHHh----h-c--CCcEEeCCCCCCCcHHHHHHHHHh
Confidence 5556666666666431 2366666543311 1111 1 1 466665543 46777888999988
Q ss_pred cCCCEEEEEeCCCCC-CcchHHHHHHHH
Q 019818 155 SRGELLLMLDADGAT-KVTDLEKLESQI 181 (335)
Q Consensus 155 a~~d~v~~~DaD~~~-~~~~l~~l~~~~ 181 (335)
+..+.++++=+|... +++.+..|+...
T Consensus 257 ~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 257 HPDAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred CCCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 888889999999964 888888888764
No 210
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=53.85 E-value=2.1e+02 Score=27.38 Aligned_cols=113 Identities=8% Similarity=0.000 Sum_probs=63.1
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcC-----CCCceEEEEEECCCC--cc-hHHHHHHHHHHcCCCcEE
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKD-----KSFTYEVLIIDDGSS--DG-TKRVAFDFVRKYTVDNVR 134 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~-----~~~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~~~i~ 134 (335)
+..+++.++|-+.=.....++ +..+..+.....+. ....+.+.+|-..|. ++ ....+++-.+.+. .+.
T Consensus 134 ~~~~~~~LvIgI~Sap~~~~R--R~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~yg--DIL 209 (408)
T PLN03193 134 SGKRRYLMVVGINTAFSSRKR--RDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHG--DFL 209 (408)
T ss_pred CCcceEEEEEEEeCCCCCHHH--HHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhC--CEE
Confidence 344556666666555444444 23333333210000 113366666666554 22 3334555556666 566
Q ss_pred EEEcCCCC----ChH-HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHH
Q 019818 135 IILLGRNH----GKG-EAIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179 (335)
Q Consensus 135 vi~~~~~~----Gk~-~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~ 179 (335)
+....+.. .|. ..+..+.+....+|++-.|+|.-+..+.|...+.
T Consensus 210 ~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~ 259 (408)
T PLN03193 210 RLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLV 259 (408)
T ss_pred EEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHH
Confidence 65554432 244 3355666667889999999999999887777664
No 211
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=50.76 E-value=87 Score=30.29 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=63.6
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CCC
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NHG 143 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~~G 143 (335)
.+..+.-+|...+.+ +.++.+.|+ +.+.-.+.||..|+++-...++++...++ ||.+..... ..|
T Consensus 104 ~~a~~~~v~kd~~~v----erll~aiYh------PqN~ycihvD~~s~~~fk~~~~~L~~cf~--NV~v~~k~~~v~~~G 171 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQV----ERLLQAIYH------PQNVYCIHVDAKSPPEFRVAMQQLASCFP--NVIVLPKRESVTYGG 171 (439)
T ss_pred ceEEEEeecccHHHH----HHHHHHHhC------CcCcceEEECCCCCHHHHHHHHHHHhcCC--ceEEeccccceecCC
Confidence 467777778775554 455555553 55778899999999999999999999999 898886332 233
Q ss_pred --hHHHHHHHHHh----c-CCCEEEEEeCCC-CC-CcchHHHHHHHH
Q 019818 144 --KGEAIRKGMLH----S-RGELLLMLDADG-AT-KVTDLEKLESQI 181 (335)
Q Consensus 144 --k~~aln~g~~~----a-~~d~v~~~DaD~-~~-~~~~l~~l~~~~ 181 (335)
.-.|-..+++. . .-+|++.+-+.+ .+ ..+.+.++...+
T Consensus 172 ~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 172 HSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred chhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 22222222322 1 247777775544 33 333344444444
No 212
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=48.06 E-value=2e+02 Score=26.56 Aligned_cols=85 Identities=19% Similarity=0.150 Sum_probs=46.8
Q ss_pred eccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHH---HcCCCcEEEEEcCCCCChHHHHH
Q 019818 73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR---KYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 73 p~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
........+..|++.+.. ....-+++||.+. +--..+.+++.+ ..+ ..++..|..+.-+.|+-
T Consensus 29 ~L~~~~Sllq~T~~R~~~---------l~~~~~~~vVtne--~~~f~v~eql~e~~~~~~---~~illEP~gRnTApAIA 94 (333)
T COG0836 29 KLFGDLSLLQQTVKRLAF---------LGDIEEPLVVTNE--KYRFIVKEQLPEIDIENA---AGIILEPEGRNTAPAIA 94 (333)
T ss_pred eeCCCCcHHHHHHHHHhh---------cCCccCeEEEeCH--HHHHHHHHHHhhhhhccc---cceEeccCCCCcHHHHH
Confidence 344455667777777765 2235688888762 222222233322 222 12555555555555555
Q ss_pred HHHHhcC---C-CEEEEEeCCCCCCc
Q 019818 150 KGMLHSR---G-ELLLMLDADGATKV 171 (335)
Q Consensus 150 ~g~~~a~---~-d~v~~~DaD~~~~~ 171 (335)
.|...+. + ..++++-+|-.+..
T Consensus 95 ~aa~~~~~~~~d~~~lVlpsDH~I~d 120 (333)
T COG0836 95 LAALSATAEGGDALVLVLPSDHVIAD 120 (333)
T ss_pred HHHHHHHHhCCCcEEEEecCcceecc
Confidence 5555542 2 47999999987654
No 213
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=45.89 E-value=1e+02 Score=21.61 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=44.0
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCC
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA 168 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~ 168 (335)
..++.++-..|.|+ |++....+.+ ++..++-+.++|-..|+...++..+..+-+.+-+|..
T Consensus 9 ~~~~~~lvS~s~DG--e~ia~~~~~~---G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDGP 69 (74)
T PF04028_consen 9 RRKIAALVSRSRDG--ELIARVLERF---GFRTIRGSSSRGGARALREMLRALKEGYSIAITPDGP 69 (74)
T ss_pred CCCEEEEEccCcCH--HHHHHHHHHc---CCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 46677777777776 4445555555 4778888888999999999999987655556666654
No 214
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=45.27 E-value=90 Score=25.09 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=41.7
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
+++|+.|+. |++.+.++++.++.+ +.+...+-.......+...+....-...+++|.|..+-...+...+..
T Consensus 65 ~~~vV~Vs~---D~~~~~~~~f~~~~~---~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~ 136 (146)
T cd03008 65 QLALVYVSM---DQSEQQQESFLKDMP---KKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILR 136 (146)
T ss_pred CEEEEEEEC---CCCHHHHHHHHHHCC---CCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHH
Confidence 599999974 444555667766654 222111111112223434444445599999999998766666655543
No 215
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=44.99 E-value=88 Score=29.00 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=58.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC-----CcEEEEEc------C
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV-----DNVRIILL------G 139 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-----~~i~vi~~------~ 139 (335)
++|+-+..+.|...|+++.+. .--||+|+..-..+...+.+. +.+.. ..+.++.. +
T Consensus 23 llpv~g~~pli~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCINS----------GIRRIGVLTQYKSHSLNRHIQ---RGWDFDGFIDGFVTLLPAQQRESGT 89 (361)
T ss_pred cceecceeeEeeehhhhhhhc----------CCceEEEEeccChHHHHHHHH---hccCccCccCCCEEEeCCcccCCCC
Confidence 566655545777777777652 235777776644444333333 22110 02344221 1
Q ss_pred -CCCChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 140 -RNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 140 -~~~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
...|-+.++..++.... .+.++++.+|...+. .+..+++...+
T Consensus 90 ~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~-~l~~~l~~~~~ 136 (361)
T TIGR02091 90 DWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKM-DYEKMLDYHIE 136 (361)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHH
Confidence 12688888888887764 578999999997654 46777776654
No 216
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=44.09 E-value=41 Score=28.96 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=40.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~ 138 (335)
=.|||..+||+ .|+...+ ..+.+.=.++|=++.|.-.+.++.+.++|| ++.++-+
T Consensus 30 N~VIi~gR~e~-----~L~e~~~---------~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P--~lNvliN 84 (245)
T COG3967 30 NTVIICGRNEE-----RLAEAKA---------ENPEIHTEVCDVADRDSRRELVEWLKKEYP--NLNVLIN 84 (245)
T ss_pred CEEEEecCcHH-----HHHHHHh---------cCcchheeeecccchhhHHHHHHHHHhhCC--chheeee
Confidence 47899999985 3344444 234566677787788889999999999999 7777765
No 217
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=43.10 E-value=1.1e+02 Score=25.97 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=55.5
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHH--cCCCcEEEEEc--CCCCChHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK--YTVDNVRIILL--GRNHGKGE 146 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~vi~~--~~~~Gk~~ 146 (335)
++|+-|. +.|.-+++.+.+ ..--+|+|+.....+...+.+.+.... .+...+.++.. .+..|-+.
T Consensus 25 llpv~g~-pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~ 93 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEK----------AGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDAL 93 (216)
T ss_pred cceECCE-EHHHHHHHHHHH----------CCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHH
Confidence 5566665 677777776655 223467777664444433333321100 01113333333 34678888
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 147 aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
++..+.....++ ++++.+|...+.+ +..+++.
T Consensus 94 ~l~~~~~~i~~d-flv~~gD~i~~~~-l~~~l~~ 125 (216)
T cd02507 94 RLRDIRGLIRSD-FLLLSCDLVSNIP-LSELLEE 125 (216)
T ss_pred HHHHHhhcCCCC-EEEEeCCEeecCC-HHHHHHH
Confidence 888887777666 6779999876654 5566643
No 218
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=41.60 E-value=49 Score=28.40 Aligned_cols=75 Identities=19% Similarity=0.040 Sum_probs=41.8
Q ss_pred CceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC------------CC---h-HHHHHHHHHh-cCCCEEEEEe
Q 019818 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN------------HG---K-GEAIRKGMLH-SRGELLLMLD 164 (335)
Q Consensus 102 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~------------~G---k-~~aln~g~~~-a~~d~v~~~D 164 (335)
..+.+++++|+.+++..+.+++...+.. .+..+..... .+ + ..+.-...+. ...|-++++|
T Consensus 29 ~~~~i~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD 106 (250)
T PF01501_consen 29 SNLHIYIITDDISEEDFEKLRALAAEVI--EIEPIEFPDISMLEEFQFNSPSKRHFSPATFARLFIPDLLPDYDRILYLD 106 (250)
T ss_dssp SSEEEEEEESSS-HHHHHHHHHHSCCCC--TTECEEETSGGHHH--TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-
T ss_pred ccceEEEecCCCCHHHHHHHhhhccccc--ceeeeccchHHhhhhhhhcccccccccHHHHHHhhhHHHHhhcCeEEEEc
Confidence 5788999999888888877776655443 2222222111 00 1 1112223344 4679999999
Q ss_pred CCCCCCcchHHHHHH
Q 019818 165 ADGATKVTDLEKLES 179 (335)
Q Consensus 165 aD~~~~~~~l~~l~~ 179 (335)
+|..+-. .+..+.+
T Consensus 107 ~D~lv~~-dl~~lf~ 120 (250)
T PF01501_consen 107 ADTLVLG-DLDELFD 120 (250)
T ss_dssp TTEEESS--SHHHHC
T ss_pred CCeeeec-Chhhhhc
Confidence 9998743 4555554
No 219
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=41.57 E-value=1.1e+02 Score=25.37 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=31.3
Q ss_pred EEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC-hHHHHHHHHHhc-CCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 105 EVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-KGEAIRKGMLHS-RGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 105 eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G-k~~aln~g~~~a-~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
|||||.. .|++..+-+.+ ++.++.... .+ ....+..--..+ +-.+++|+|+|.. -+.+.+.+..
T Consensus 4 evIVVEG--K~D~~~lk~~~-------d~~~I~T~G-s~i~~~~i~~i~~~~~~rgVIIfTDpD~~--GekIRk~i~~ 69 (174)
T TIGR00334 4 EIIVVEG--KDDQARIKQAF-------DVDVIETNG-SALKDETINLIKKAQKKQGVIILTDPDFP--GEKIRKKIEQ 69 (174)
T ss_pred eEEEEec--chHHHHHHHhc-------CceEEEECC-CccCHHHHHHHHHHhhcCCEEEEeCCCCc--hHHHHHHHHH
Confidence 7777764 34454443322 355555432 22 112222222222 3578888888874 3445554443
No 220
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.14 E-value=23 Score=34.78 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=68.3
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC--CcEEEEEcCCCCC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGRNHG 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~i~vi~~~~~~G 143 (335)
-.++||+-+|..+++|-..|+.+... || --.|+||=|+..|..-+. .+|. ..|.+++.++|.=
T Consensus 649 EQFTvVmLTYERe~VLm~sLeRL~gL--------PY-LnKvvVVWNspk~P~ddl------~WPdigvPv~viR~~~NsL 713 (907)
T KOG2264|consen 649 EQFTVVMLTYEREAVLMGSLERLHGL--------PY-LNKVVVVWNSPKDPPDDL------TWPDIGVPVEVIRVAENSL 713 (907)
T ss_pred ceEEEEEEEehHHHHHHHHHHHhhCC--------cc-cceEEEEeCCCCCChhcc------cCcCCCCceEEEEcccccc
Confidence 36999999999998888877777652 44 357778877776664432 3442 3567788776521
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhcc
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~ 186 (335)
. ++-.-+.....|.|+-+|+|..+-.+.+.--...+.++.+
T Consensus 714 N--NRFlPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RD 754 (907)
T KOG2264|consen 714 N--NRFLPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRD 754 (907)
T ss_pred c--ccccCchhhhheeeeecccchhhhhhheeeeeehhhhccc
Confidence 1 1112234567899999999998776666544555556554
No 221
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=38.05 E-value=3e+02 Score=26.04 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=49.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~al 148 (335)
++|+-+ .+.|..+++.+... .-+|+++-. ... .++.+.+.+.++ +++++..++ ..|.+.++
T Consensus 24 Llpi~g-kPli~~~i~~l~~~-----------~~~i~Ivv~-~~~--~~i~~~~~~~~~--~v~~~~~~~~~~~gt~~al 86 (430)
T PRK14359 24 LHTICG-KPMLFYILKEAFAI-----------SDDVHVVLH-HQK--ERIKEAVLEYFP--GVIFHTQDLENYPGTGGAL 86 (430)
T ss_pred eCEECC-ccHHHHHHHHHHHc-----------CCcEEEEEC-CCH--HHHHHHHHhcCC--ceEEEEecCccCCCcHHHH
Confidence 456644 46677777777652 124555443 222 222222322333 577765542 35677777
Q ss_pred HHHHHhcCCCEEEEEeCCCC-CCcchHHHHH
Q 019818 149 RKGMLHSRGELLLMLDADGA-TKVTDLEKLE 178 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~ 178 (335)
... ....|.++++++|.. ..++.++++.
T Consensus 87 ~~~--~~~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 87 MGI--EPKHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred hhc--ccCCCeEEEEECCccCCCHHHHHHHH
Confidence 552 224689999999984 4666666654
No 222
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=36.77 E-value=2.5e+02 Score=23.45 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=49.3
Q ss_pred CC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCChHHHHHHHH
Q 019818 76 NE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGM 152 (335)
Q Consensus 76 ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~Gk~~aln~g~ 152 (335)
+. ...++.+++.+... .-+|+|+.+. +.. + . .+.++.. ....|.-+++..++
T Consensus 32 ~g~~~ll~~~i~~l~~~-----------~~~vvvv~~~--~~~-~----~-------~~~~v~d~~~~~~gpl~gi~~~l 86 (196)
T PRK00560 32 GSYSSLLEYQYTRLLKL-----------FKKVYISTKD--KKF-E----F-------NAPFLLEKESDLFSPLFGIINAF 86 (196)
T ss_pred CCCCcHHHHHHHHHHHh-----------CCEEEEEECc--hhc-c----c-------CCcEEecCCCCCCCcHHHHHHHH
Confidence 55 66777777776542 2456666552 111 0 1 2334443 22356666777788
Q ss_pred HhcCCCEEEEEeCCCCC-CcchHHHHH
Q 019818 153 LHSRGELLLMLDADGAT-KVTDLEKLE 178 (335)
Q Consensus 153 ~~a~~d~v~~~DaD~~~-~~~~l~~l~ 178 (335)
.....++++++=+|... +++.++++.
T Consensus 87 ~~~~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 87 LTLQTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred HhcCCCeEEEEecCcCcCCHHHHHHHH
Confidence 77788999999999965 888888874
No 223
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=36.26 E-value=3.5e+02 Score=25.87 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=59.3
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC------CCcEEEEEc------
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT------VDNVRIILL------ 138 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~~~i~vi~~------ 138 (335)
++|+-+....|.-.|+++.+ ..--+|+++..-..+...+.+.+ .+. ...+.++..
T Consensus 40 llpv~gkp~lI~~~l~~l~~----------~Gi~~i~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~ 106 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCIN----------SGIRRIGVLTQYKAHSLIRHIQR---GWSFFREELGEFVDLLPAQQRVDE 106 (425)
T ss_pred eEEECCEEEEhHHHHHHHHH----------CCCCeEEEEecCCHHHHHHHHHh---hhcccccCCCCeEEEeCCcccCCC
Confidence 67776665577777777765 22357877776544433333322 111 001222211
Q ss_pred -CCCCChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 139 -GRNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 139 -~~~~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
+...|-+.|+..+..... .|.++++.+|...+ ..+..+++...+
T Consensus 107 e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~ 154 (425)
T PRK00725 107 ENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVE 154 (425)
T ss_pred CccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHH
Confidence 113688899888877664 47899999998654 457788876544
No 224
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=35.94 E-value=2.4e+02 Score=23.02 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=37.3
Q ss_pred CCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHH
Q 019818 100 KSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLE 178 (335)
Q Consensus 100 ~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~ 178 (335)
...++|||+|+ +|.+.+-+.+.....+ .-....+-+..+..-+..=.....=+-+.++..|...-+..-..++
T Consensus 65 ~~~~fEVvfVS---~D~~~~~~~~y~~~~~---~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v 137 (157)
T KOG2501|consen 65 NAAPFEVVFVS---SDRDEESLDEYMLEHH---GDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLV 137 (157)
T ss_pred cCCceEEEEEe---cCCCHHHHHHHHHhcC---CCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHH
Confidence 45589999995 4555555566555544 2222222111122222222233344788888888854333333333
No 225
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=34.96 E-value=1.8e+02 Score=21.74 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=5.2
Q ss_pred EEEEEeccCCC
Q 019818 68 ISLIIPAFNEE 78 (335)
Q Consensus 68 vsViip~~ne~ 78 (335)
+.-.+|..||+
T Consensus 73 ~~~~~~~~~eD 83 (102)
T PF15176_consen 73 VGSQIPDTNED 83 (102)
T ss_pred ccccCCCCCCC
Confidence 33345555553
No 226
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=34.89 E-value=1.3e+02 Score=27.96 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=38.9
Q ss_pred EEEEEc-CCCCChHHHHHHHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHH
Q 019818 133 VRIILL-GRNHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIH 182 (335)
Q Consensus 133 i~vi~~-~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~ 182 (335)
+.++.. .+..|..+++..|++.+..+.++++=+|.. ++++.+..+++.+.
T Consensus 220 v~~I~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 220 LPTLPDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred CeEEeCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 444433 335799999999999887667789999997 68899999988774
No 227
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=34.71 E-value=1.2e+02 Score=31.72 Aligned_cols=218 Identities=15% Similarity=0.090 Sum_probs=105.9
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcc----h--HHHHHHHHHH-cC---CCcEEE
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG----T--KRVAFDFVRK-YT---VDNVRI 135 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~----t--~~~~~~~~~~-~~---~~~i~v 135 (335)
.+++.||.+-.=.+.-.+..+++...+. .++..+|-.||...+.. + ...+-+...+ .+ ...+-=
T Consensus 190 ~KF~yVVs~Q~yg~~~~~~a~~i~~Lm~------~~P~LrVAYide~~~~~~~~~~~yYS~Lv~~~~~~~~~g~~~~~yr 263 (817)
T PF02364_consen 190 RKFTYVVSCQRYGKFKKEEAEDIEFLMR------AYPSLRVAYIDEVPDRNGGGEPEYYSVLVKGDCEIDENGKRQEIYR 263 (817)
T ss_pred cCCCEEEecchhcCCChHHHHHHHHHHH------hCCceEEEEEeeecccCCCCCceEEEEEecCCccccccCcccceEE
Confidence 4567777763322222444444444333 57789999998543211 0 1111110000 00 012222
Q ss_pred EEcCCC----CChHHHHHHHHHhcCCCEEEEEeCCCCC-Ccch--HHHHHHHHHHhccccccCCCcccccccccccCCCe
Q 019818 136 ILLGRN----HGKGEAIRKGMLHSRGELLLMLDADGAT-KVTD--LEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPI 208 (335)
Q Consensus 136 i~~~~~----~Gk~~aln~g~~~a~~d~v~~~DaD~~~-~~~~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (335)
+.+|.| -||+.+.|.|+--++||++=.+|++..- -.++ +..+++.|++..... . ..+.-+.. .-...+.
T Consensus 264 i~LpG~pilGeGK~eNQNhaiiF~rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~-~--~~~~~~~~-~~~~~~~ 339 (817)
T PF02364_consen 264 IKLPGNPILGEGKPENQNHAIIFTRGEYLQTIDMNQDNYLEEALKMRNLLEEFEEMHGDS-S--SPYIPGIE-EEGKRPV 339 (817)
T ss_pred EECCCCCcCCCCCccccceeEEEEccccccccccchhhhHHHHHHHHHHHHHHHhcCCCC-C--CCCCCCcc-ccCCCCc
Confidence 444544 4799999999999999999999987631 1111 334555555431100 0 00000000 1112345
Q ss_pred eeeecchhhhhHhhhhhhhhHHHHHHHHHHHHHHHh-------CCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHH
Q 019818 209 AAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTA-------GPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEL 281 (335)
Q Consensus 209 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el 281 (335)
.++|.|.+.-.+....-.++...-...+..+..+.+ ....+|.--..++..|--+.+.- ......||.--
T Consensus 340 aIlG~RE~IFs~~vg~L~~~aa~qE~~F~Tl~qR~la~p~~rlHYGHPD~~n~~f~~TRGGvSKAs---k~lhLsEDIfa 416 (817)
T PF02364_consen 340 AILGFREHIFSENVGSLGDFAAGQEQSFGTLFQRTLANPLVRLHYGHPDVFNRIFMTTRGGVSKAS---KGLHLSEDIFA 416 (817)
T ss_pred eEecccceEecCCcchHHHHhhhhhHHHHHHHHHHHhcchhhccCCCchhhhhhheeccCccchHh---hcccccHHHHH
Confidence 777888664332222222222222233333333322 22233333333444444443331 12344569999
Q ss_pred HHHhHHcCCCEEEee
Q 019818 282 VYLCKRFGIPIIEIS 296 (335)
Q Consensus 282 ~~r~~~~G~~i~~~p 296 (335)
.+-+..+|-+|....
T Consensus 417 G~n~~lRGG~i~h~e 431 (817)
T PF02364_consen 417 GMNATLRGGRIKHCE 431 (817)
T ss_pred HHHHHhcCCceeehh
Confidence 999999999998775
No 228
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=34.71 E-value=2.3e+02 Score=22.46 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC-CCcEEEEEcCCCCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-VDNVRIILLGRNHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~vi~~~~~~Gk~~aln~g~~~ 154 (335)
+....+...|....+.+.. .+...-.|+++.||..++..+..+.+.+... ...+..+......+ ...+..-.+.
T Consensus 77 ~g~T~l~~al~~a~~~l~~----~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~-~~~l~~ia~~ 151 (171)
T cd01461 77 LGGTNMNDALEAALELLNS----SPGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDVN-TYLLERLARE 151 (171)
T ss_pred CCCcCHHHHHHHHHHhhcc----CCCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCccC-HHHHHHHHHc
Confidence 3444555555555444331 2455689999999987666655555543322 22344444432122 2344444444
Q ss_pred cCCCEEEEEeCCC
Q 019818 155 SRGELLLMLDADG 167 (335)
Q Consensus 155 a~~d~v~~~DaD~ 167 (335)
..|.++-+.|++.
T Consensus 152 ~gG~~~~~~~~~~ 164 (171)
T cd01461 152 GRGIARRIYETDD 164 (171)
T ss_pred CCCeEEEecChHH
Confidence 5566666665543
No 229
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=34.52 E-value=2.2e+02 Score=24.03 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=24.9
Q ss_pred eEEEEEECC-CCcch-HHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 104 YEVLIIDDG-SSDGT-KRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 104 ~eiivvdd~-s~d~t-~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..|++|||. ||-.| ..+++++.+.+|..++.+...-...+
T Consensus 122 ~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~ 163 (191)
T PF15609_consen 122 RTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRS 163 (191)
T ss_pred CCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCC
Confidence 378888887 44444 56677777777744555555544444
No 230
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=33.40 E-value=4.5e+02 Score=25.33 Aligned_cols=108 Identities=17% Similarity=0.073 Sum_probs=57.3
Q ss_pred CCCceEEEEEecc-CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHH------HHcCCCcEEE
Q 019818 63 PAEKYISLIIPAF-NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV------RKYTVDNVRI 135 (335)
Q Consensus 63 ~~~~~vsViip~~-ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~------~~~~~~~i~v 135 (335)
+..|+++-+|-++ ++.+. ++.++..+++ +.+.-+|=+|-.|++.-...+.... ..++ +|.+
T Consensus 75 ~~~~r~AYLI~~h~~d~~~----l~RLL~aLYh------prN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~--NV~v 142 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEK----LWRTLRALYH------PRNQYVVHLDLESPAEERLELASRVENDPMFSKVG--NVYM 142 (421)
T ss_pred CCCCeEEEEEEecCCcHHH----HHHHHHHhcC------CCceEEEEecCCCChHHHHHHHHHhhccchhhccC--cEEE
Confidence 4578999999998 55444 4455554442 3344445577767665433333222 2344 7888
Q ss_pred EEcCC---CCC--hHHHHH----HHHHhc-CCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 136 ILLGR---NHG--KGEAIR----KGMLHS-RGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 136 i~~~~---~~G--k~~aln----~g~~~a-~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
+.... ..| ...|-- ..++.+ .-||++.+.+.+.+-. .-+.++..|..
T Consensus 143 l~k~~~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLk-TqdelI~~F~~ 199 (421)
T PLN03183 143 ITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLV-TQDDLIHTFST 199 (421)
T ss_pred EecceeeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCccccc-CHHHHHHHHHh
Confidence 76532 233 222322 222322 3489999888775421 22344554433
No 231
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=32.95 E-value=1.9e+02 Score=21.62 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=19.4
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCC
Q 019818 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTV 130 (335)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~ 130 (335)
.++.+.|+|-|++..+ .++-.++++++|+
T Consensus 62 fP~~kfiLIGDsgq~D-peiY~~ia~~~P~ 90 (100)
T PF09949_consen 62 FPERKFILIGDSGQHD-PEIYAEIARRFPG 90 (100)
T ss_pred CCCCcEEEEeeCCCcC-HHHHHHHHHHCCC
Confidence 4455555555544433 7888889999996
No 232
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=31.73 E-value=2.3e+02 Score=26.36 Aligned_cols=101 Identities=17% Similarity=0.066 Sum_probs=57.3
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC----CCcEEEE----EcCC--
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRII----LLGR-- 140 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~i~vi----~~~~-- 140 (335)
++|+-+....|..+|+.+.+ ..--+|+++-.--.+.-.+.+.+. .++. ..++.++ ...+
T Consensus 28 llpv~gk~pli~~~l~~l~~----------~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 96 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCAN----------SGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGGVTILPPYSESEGGK 96 (380)
T ss_pred eeeeCCceeehhHHHHHHHh----------CCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCCEEEeCCcccCCCCc
Confidence 67776654677877777765 223477777654332222222110 1111 0124443 1122
Q ss_pred -CCChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 141 -NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 141 -~~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|-+.|+..+..... .|.++++.+|...+. .+.++++...+
T Consensus 97 ~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~ 142 (380)
T PRK05293 97 WYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKE 142 (380)
T ss_pred ccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHh
Confidence 2678889988887754 478999999996654 45666665543
No 233
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=31.10 E-value=2.9e+02 Score=22.42 Aligned_cols=28 Identities=14% Similarity=0.117 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 157 GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 157 ~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.++++.+|-... ++...+.+.+......
T Consensus 65 ~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~ 93 (153)
T TIGR00246 65 KAHVVTLDIPGKPWTTPQLADTLEKWKTD 93 (153)
T ss_pred CCeEEEEcCCCCcCCHHHHHHHHHHHhcc
Confidence 589999999985 6777788877776543
No 234
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.08 E-value=46 Score=26.05 Aligned_cols=6 Identities=33% Similarity=1.121 Sum_probs=2.4
Q ss_pred EeccCC
Q 019818 72 IPAFNE 77 (335)
Q Consensus 72 ip~~ne 77 (335)
+|.|++
T Consensus 63 ~P~y~~ 68 (130)
T PF12273_consen 63 VPPYTE 68 (130)
T ss_pred CCCCCC
Confidence 344443
No 235
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=30.16 E-value=2.7e+02 Score=26.39 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=59.0
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC--CcEEEEEc-C--C-----
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILL-G--R----- 140 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~i~vi~~-~--~----- 140 (335)
++|+-+..+.|.-.|+++.+ ..--+|+++-....+...+.+. ..+.. ..+.++.. + .
T Consensus 30 llPv~gk~plI~~~L~~l~~----------~Gi~~i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVN----------SGYLRIYVLTQYKSHSLDRHIS---QTWRLSGLLGNYITPVPAQQRLGKR 96 (407)
T ss_pred ceeeCCcceEhHHHHHHHHH----------CCCCEEEEEeccCHHHHHHHHH---hCcCccccCCCeEEECCcccCCCCC
Confidence 67777765677777777765 2345777777654444444332 21110 01222321 1 1
Q ss_pred -CCChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 141 -NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 141 -~~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|-+.|+..+..... .|+++++.+|...+ ..+.++++...+
T Consensus 97 ~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~ 142 (407)
T PRK00844 97 WYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIE 142 (407)
T ss_pred cccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHh
Confidence 3688889888877753 26899999998654 456777765544
No 236
>PF15102 TMEM154: TMEM154 protein family
Probab=29.51 E-value=34 Score=27.43 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=9.4
Q ss_pred ceEEEEEeccCCC
Q 019818 66 KYISLIIPAFNEE 78 (335)
Q Consensus 66 ~~vsViip~~ne~ 78 (335)
..=.|.+|.|.|+
T Consensus 106 ~~Env~~PiFEed 118 (146)
T PF15102_consen 106 GSENVKVPIFEED 118 (146)
T ss_pred CcccccccccccC
Confidence 3456788998885
No 237
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.94 E-value=3.7e+02 Score=22.95 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=51.1
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEE-ECCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLII-DDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivv-dd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|.||+|..+.. ......+.+.+....+ .+++.++ +...+.+ -.+.++.+.++.+ +.-++.........
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~~-------g~~~~~~~~~~~d~~~q~~~i~~~i~~~~--d~Iiv~~~~~~~~~ 70 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKEL-------GYEVEIVFDAQNDPEEQIEQIEQAISQGV--DGIIVSPVDPDSLA 70 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHHH-------TCEEEEEEESTTTHHHHHHHHHHHHHTTE--SEEEEESSSTTTTH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHHc-------CCEEEEeCCCCCCHHHHHHHHHHHHHhcC--CEEEecCCCHHHHH
Confidence 56788887776 6666777777766653 4677775 5555444 3666666666655 44444443333333
Q ss_pred HHHHHHHHhcCCCEEEEEeCC
Q 019818 146 EAIRKGMLHSRGELLLMLDAD 166 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD 166 (335)
..++.+. ..|=-|+++|.|
T Consensus 71 ~~l~~~~--~~gIpvv~~d~~ 89 (257)
T PF13407_consen 71 PFLEKAK--AAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHH--HTTSEEEEESST
T ss_pred HHHHHHh--hcCceEEEEecc
Confidence 4444422 235567888888
No 238
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=28.67 E-value=2.6e+02 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=24.2
Q ss_pred CCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 156 RGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 156 ~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
.++-++++-++..+.++|+....+.+.+
T Consensus 157 ~~~~f~~vASE~~i~~ewi~~a~e~~~e 184 (188)
T PF09886_consen 157 EGNSFAFVASEETIKDEWIEEAKEMIEE 184 (188)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999887777654
No 239
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=28.23 E-value=5.2e+02 Score=24.46 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=54.7
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHG 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~~G 143 (335)
+.+++-|..+||+ -|.+.|+.+-+-.. +...-++|++.|.+++.+.. +++++ .+++.+- +=+-
T Consensus 32 ~~~slavAGRn~~-KL~~vL~~~~~k~~------~~ls~~~i~i~D~~n~~Sl~---emak~-----~~vivN~vGPyR~ 96 (423)
T KOG2733|consen 32 EGLSLAVAGRNEK-KLQEVLEKVGEKTG------TDLSSSVILIADSANEASLD---EMAKQ-----ARVIVNCVGPYRF 96 (423)
T ss_pred cCceEEEecCCHH-HHHHHHHHHhhccC------CCcccceEEEecCCCHHHHH---HHHhh-----hEEEEecccccee
Confidence 3478899999985 35555555544221 23356778888877776654 33332 3333332 2122
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
.+.+.-.+--.....+| |..=+|.++++|....++
T Consensus 97 hGE~VVkacienG~~~v-----DISGEP~f~E~mq~kYhd 131 (423)
T KOG2733|consen 97 HGEPVVKACIENGTHHV-----DISGEPQFMERMQLKYHD 131 (423)
T ss_pred cCcHHHHHHHHcCCcee-----ccCCCHHHHHHHHHHHHH
Confidence 33333332222333443 666789999999877643
No 240
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=28.14 E-value=4.1e+02 Score=23.22 Aligned_cols=99 Identities=6% Similarity=0.021 Sum_probs=63.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
++.|.-. +..|..+|+.+..+ ...-+|++.. |++++-..++..+.+++ +.+++-++. ---.-.-
T Consensus 21 vLlpL~~-~pmI~~~lervrks---------~~~d~ivvAT--S~~~~d~~l~~~~~~~G---~~vfrGs~~-dVL~Rf~ 84 (241)
T COG1861 21 VLLPLGG-EPMIEYQLERVRKS---------KDLDKIVVAT--SDKEEDDALEEVCRSHG---FYVFRGSEE-DVLQRFI 84 (241)
T ss_pred hhhhcCC-CchHHHHHHHHhcc---------ccccceEEEe--cCCcchhHHHHHHHHcC---eeEecCCHH-HHHHHHH
Confidence 4556544 46788888888773 3345666654 55666667777776654 555543210 0111223
Q ss_pred HHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 150 KGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.+++.-.++.|+-+-+|+. ++|+.+..++....+.
T Consensus 85 ~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~ 120 (241)
T COG1861 85 IAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEK 120 (241)
T ss_pred HHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhc
Confidence 3444556899999999996 5899999888877653
No 241
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=27.64 E-value=2.9e+02 Score=26.41 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=59.3
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC----Cc-EEEEEcC---C--
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV----DN-VRIILLG---R-- 140 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~----~~-i~vi~~~---~-- 140 (335)
++|+-|....|.-+|+.+.+ ..--+|+++..-..+...+.+.+ .+.. .. +.+.... .
T Consensus 28 Llpi~gk~plI~~~L~~l~~----------~Gi~~vivv~~~~~~~i~~~l~~---~~~~~~~~~g~~~i~~~~~~~~~~ 94 (429)
T PRK02862 28 AVPLAGKYRLIDIPISNCIN----------SGINKIYVLTQFNSASLNRHISQ---TYNFDGFSGGFVEVLAAQQTPENP 94 (429)
T ss_pred eeEECCeeEEeHHHHHHHHH----------CCCCEEEEEecCCHHHHHHHHhc---CcCccccCCCEEEEeCCcccCCCC
Confidence 77877765777777777765 22357777766433333333322 1110 01 2222211 1
Q ss_pred --CCChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 141 --NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 141 --~~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|-+.|+..+..... .+.++++.+|...+ ..+..+++...+
T Consensus 95 ~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~ 141 (429)
T PRK02862 95 SWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRE 141 (429)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHH
Confidence 1588899988887653 36789999999654 567788876644
No 242
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=27.08 E-value=3.3e+02 Score=25.58 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred CCCEEEEEeCCCCCCcchHHHHH
Q 019818 156 RGELLLMLDADGATKVTDLEKLE 178 (335)
Q Consensus 156 ~~d~v~~~DaD~~~~~~~l~~l~ 178 (335)
.+|+|++.|.|.++.|+.|..|-
T Consensus 178 ~dDliivSDvDEIP~p~~l~~Lr 200 (356)
T PF04724_consen 178 DDDLIIVSDVDEIPSPETLKFLR 200 (356)
T ss_pred CCCEEEEcCcccccCHHHHHHHH
Confidence 47999999999999999887663
No 243
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=25.50 E-value=2.3e+02 Score=19.45 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred CCCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 156 RGELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 156 ~~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
.++|..++|-|. +.+.+.++++.+++.
T Consensus 40 ~~~y~Ffvd~~~--~~~~~~~~l~~L~~~ 66 (74)
T cd04904 40 GSEYEFFVDCEV--DRGDLDQLISSLRRV 66 (74)
T ss_pred CceEEEEEEEEc--ChHHHHHHHHHHHHh
Confidence 479999999998 455678888877653
No 244
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=25.29 E-value=4.1e+02 Score=22.30 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHH
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~ 176 (335)
..+...++...-|+++...-...++++.+..
T Consensus 69 ~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~ 99 (190)
T TIGR00639 69 QAIIEELRAHEVDLVVLAGFMRILGPTFLSR 99 (190)
T ss_pred HHHHHHHHhcCCCEEEEeCcchhCCHHHHhh
Confidence 4556667777889998888777778776653
No 245
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=25.01 E-value=3.8e+02 Score=21.77 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCC-CCcchHHHHHHHHHHhc
Q 019818 156 RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (335)
Q Consensus 156 ~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~ 185 (335)
.+++++.+|.+.. ++...+.+.++......
T Consensus 66 ~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g 96 (155)
T PF02590_consen 66 PNDYVILLDERGKQLSSEEFAKKLERWMNQG 96 (155)
T ss_dssp TTSEEEEE-TTSEE--HHHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCccCChHHHHHHHHHHHhcC
Confidence 5899999999984 68888888888876543
No 246
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.75 E-value=1.7e+02 Score=23.24 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=24.8
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCc----chHHHHHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSD----GTKRVAFDF 124 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d----~t~~~~~~~ 124 (335)
+.-...+.++.+.|.+.++...+ ..+++|+.-|+.. -|.+.++++
T Consensus 43 v~~~~~v~Dd~~~i~~~l~~~~~------------~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 43 VSRLGIVPDDPEEIREILRKAVD------------EADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred EEEEeecCCCHHHHHHHHHHHHh------------CCCEEEECCCCCCCCCccHHHHHHHh
Confidence 44455556666555555544433 4778887766554 344444443
No 247
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=24.37 E-value=3.4e+02 Score=23.54 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.6
Q ss_pred cCCCEEEEEeCCCCCCcchHHHHHH
Q 019818 155 SRGELLLMLDADGATKVTDLEKLES 179 (335)
Q Consensus 155 a~~d~v~~~DaD~~~~~~~l~~l~~ 179 (335)
...|-++++|+|..+-.+ |..+.+
T Consensus 88 ~~~drvlylD~D~~v~~~-i~~Lf~ 111 (240)
T cd02537 88 TEYDKVVFLDADTLVLRN-IDELFD 111 (240)
T ss_pred cccceEEEEeCCeeEccC-HHHHhC
Confidence 356999999999987654 445444
No 248
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=24.23 E-value=15 Score=20.89 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=10.4
Q ss_pred eEEEEEeccCCCCCh
Q 019818 67 YISLIIPAFNEEHRL 81 (335)
Q Consensus 67 ~vsViip~~ne~~~l 81 (335)
.|.|+.|+||+...|
T Consensus 8 gvgvl~pvy~~kgei 22 (36)
T PF09151_consen 8 GVGVLEPVYNQKGEI 22 (36)
T ss_dssp SSSBEEEEE-TTS-E
T ss_pred CceEEEEeecCCCcE
Confidence 377899999997654
No 249
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=23.07 E-value=89 Score=27.03 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHH
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQI 181 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~ 181 (335)
++.++..+ ..|.-.|++.|+.....+-++++=+|.. +.++.|..++...
T Consensus 64 g~~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 64 GAEVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp SSEEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred CCeEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhcc
Confidence 57788766 5677777777755455678889999995 5888888888664
No 250
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=22.91 E-value=2.4e+02 Score=25.53 Aligned_cols=75 Identities=7% Similarity=0.168 Sum_probs=49.7
Q ss_pred EEEEEE--CCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc--CCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 105 EVLIID--DGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 105 eiivvd--d~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a--~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
.+.++. --|.|+|.+++..+.+++| .+.......-..-...+..|++.. .-|+++++-+-..-..+.|.++...
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p--~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~ 236 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFP--KIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKR 236 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCc--cccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHH
Confidence 455544 4578999999999999999 444333332222334455566554 3599999988887777777777655
Q ss_pred H
Q 019818 181 I 181 (335)
Q Consensus 181 ~ 181 (335)
.
T Consensus 237 ~ 237 (294)
T COG0761 237 H 237 (294)
T ss_pred h
Confidence 4
No 251
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=22.77 E-value=3.7e+02 Score=20.95 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=31.8
Q ss_pred CCceEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEE
Q 019818 101 SFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLM 162 (335)
Q Consensus 101 ~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~ 162 (335)
..+..|+++.||.... ..+.++.+.+. ...+.++......+....++...+...|.|+-.
T Consensus 98 ~~~~~iv~iTDG~~~~~~~~~~~~~~~~--~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~ 158 (172)
T PF13519_consen 98 NRRRAIVLITDGEDNSSDIEAAKALKQQ--GITIYTVGIGSDSDANEFLQRLAEATGGRYFHV 158 (172)
T ss_dssp SEEEEEEEEES-TTHCHHHHHHHHHHCT--TEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE
T ss_pred CCceEEEEecCCCCCcchhHHHHHHHHc--CCeEEEEEECCCccHHHHHHHHHHhcCCEEEEe
Confidence 4567889999987553 34555555422 124555655544443345555555555565444
No 252
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=22.69 E-value=4.2e+02 Score=21.53 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 156 RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 156 ~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.+++++.+|.... ++...+.+.+......
T Consensus 66 ~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~ 95 (157)
T PRK00103 66 KGARVIALDERGKQLSSEEFAQELERWRDD 95 (157)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhc
Confidence 4789999999985 6778888888777544
No 253
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=21.59 E-value=4e+02 Score=20.85 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC-cchHHHHHHHHHHcCCCcEEEEEc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILL 138 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~i~vi~~ 138 (335)
.....+...|+..+.... .+...-.|+++.||.. ++..++++...+... ++++...
T Consensus 75 ~G~t~l~~aL~~a~~~~~-----~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~--~~~i~~~ 131 (155)
T PF13768_consen 75 SGGTDLLAALRAALALLQ-----RPGCVRAIILLTDGQPVSGEEEILDLVRRARG--HIRIFTF 131 (155)
T ss_pred CCCccHHHHHHHHHHhcc-----cCCCccEEEEEEeccCCCCHHHHHHHHHhcCC--CceEEEE
Confidence 344455555555554321 2456788888999984 444555554433222 4554443
No 254
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=21.59 E-value=3.5e+02 Score=23.71 Aligned_cols=51 Identities=20% Similarity=0.072 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhc--------CCCEEEEEeCCCCCCcchHHHHHHHHH
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHS--------RGELLLMLDADGATKVTDLEKLESQIH 182 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a--------~~d~v~~~DaD~~~~~~~l~~l~~~~~ 182 (335)
++.-+.-+.+.||.-.+.....++ .+--|+|+|-|...+--.|.+++++-.
T Consensus 39 ~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL 97 (293)
T KOG2859|consen 39 TLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRL 97 (293)
T ss_pred cEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHH
Confidence 566677888999999988888776 136799999999999888888777643
No 255
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=21.53 E-value=3.8e+02 Score=20.50 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=36.9
Q ss_pred eEEEEEeccCCCCC-hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 019818 67 YISLIIPAFNEEHR-LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 67 ~vsViip~~ne~~~-l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
+++||......... -...+..+.+....+. +....+++++.|.-....++.+.++++.++++ .+..++..+
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~-~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~-~~~~~l~~~ 94 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLG-ADGGDDVQVVFISVDPERDTPEVLKAYAKAFG-PGWIGLTGT 94 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhh-HhhcCceEEEEEEECCCCCCHHHHHHHHHHhC-CCcEEEECC
Confidence 35666665555543 3444444433222210 00103588988875555456667777777764 245555543
No 256
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=20.53 E-value=3.2e+02 Score=19.23 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCC
Q 019818 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA 168 (335)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~ 168 (335)
..+++++.|.- |++.+..++..++.......+.. ..+....+...+....-..++++|.|..
T Consensus 33 ~~~v~~v~Vs~---d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 33 KDDVEFVFVSL---DEDEEEWKKFLKKNNFPWYNVPF---DDDNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp TTTEEEEEEE----SSSHHHHHHHHHTCTTSSEEEET---TTHHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred CCCEEEEEEEe---CCCHHHHHHHHHhcCCCceEEee---CcchHHHHHHHCCCCcCCEEEEECCCCC
Confidence 56899999976 45555556666665211333332 2233445666666666799999999864
No 257
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=20.50 E-value=4.4e+02 Score=24.16 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=48.3
Q ss_pred eccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEEC-----------------C---CCcchHHHHHHHHHHcCCCc
Q 019818 73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDD-----------------G---SSDGTKRVAFDFVRKYTVDN 132 (335)
Q Consensus 73 p~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd-----------------~---s~d~t~~~~~~~~~~~~~~~ 132 (335)
.+||++..+.+.++.+.+. . + |++|+.| + ..|.|.+++.+.+-.+-..+
T Consensus 95 ~A~~~~givqravr~ik~~---------~-p-~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAG 163 (330)
T COG0113 95 EAYDPDGIVQRAVRAIKEA---------F-P-ELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAG 163 (330)
T ss_pred cccCCCChHHHHHHHHHHh---------C-C-CeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcC
Confidence 4788888888888888763 2 2 5555543 2 34667777766554443334
Q ss_pred EEEEEcCC-CCChHHHHHHHHHhcCCCEEEEE
Q 019818 133 VRIILLGR-NHGKGEAIRKGMLHSRGELLLML 163 (335)
Q Consensus 133 i~vi~~~~-~~Gk~~aln~g~~~a~~d~v~~~ 163 (335)
..++-.+. --|..+++..++..+...-+.++
T Consensus 164 AdivAPSdMMDGrV~aIR~aLd~ag~~~v~IM 195 (330)
T COG0113 164 ADIVAPSDMMDGRVGAIREALDEAGFIDVPIM 195 (330)
T ss_pred CCeecccccccchHHHHHHHHHHcCCCcceee
Confidence 55555443 24677777777777654444444
No 258
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.31 E-value=4.8e+02 Score=21.29 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=35.6
Q ss_pred ceEEEEEECCCCcchHHHH-HHHHHHcCCCcEEEEEc-CCCCCh--HHHHHHHHHhcCCCEEEEE
Q 019818 103 TYEVLIIDDGSSDGTKRVA-FDFVRKYTVDNVRIILL-GRNHGK--GEAIRKGMLHSRGELLLML 163 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~-~~~~~~~~~~~i~vi~~-~~~~Gk--~~aln~g~~~a~~d~v~~~ 163 (335)
+..|.++ |+++++.+.+ +.+.+++| ++.++.. ..-.+. ..++...+..+..|+|++-
T Consensus 46 ~~~v~ll--G~~~~~~~~~~~~l~~~yp--~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 46 GLRVFLL--GAKPEVLEKAAERLRARYP--GLKIVGYHHGYFGPEEEEEIIERINASGADILFVG 106 (171)
T ss_pred CCeEEEE--CCCHHHHHHHHHHHHHHCC--CcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 5788888 5666665544 56888899 7777763 223332 2234566676777876664
Done!