Query 019819
Match_columns 335
No_of_seqs 150 out of 1356
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.2E-50 2.7E-55 386.7 34.0 295 15-332 83-396 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 6.1E-48 1.3E-52 366.0 31.7 297 15-333 45-359 (398)
3 cd05472 cnd41_like Chloroplast 100.0 4.3E-46 9.3E-51 341.3 30.6 255 16-332 1-264 (299)
4 cd05478 pepsin_A Pepsin A, asp 100.0 6.7E-46 1.5E-50 342.6 28.2 269 12-332 2-286 (317)
5 PTZ00165 aspartyl protease; Pr 100.0 1.5E-45 3.2E-50 353.9 29.1 272 9-331 109-409 (482)
6 cd05477 gastricsin Gastricsins 100.0 3.6E-45 7.7E-50 338.0 29.4 265 15-331 2-280 (318)
7 cd05486 Cathespin_E Cathepsin 100.0 2.4E-45 5.3E-50 338.7 27.1 264 17-331 1-280 (316)
8 cd05475 nucellin_like Nucellin 100.0 5.5E-45 1.2E-49 329.5 28.8 237 15-333 1-237 (273)
9 cd05488 Proteinase_A_fungi Fun 100.0 7E-45 1.5E-49 336.2 27.4 269 11-331 1-284 (320)
10 cd05489 xylanase_inhibitor_I_l 100.0 3.6E-44 7.8E-49 335.2 31.4 292 23-333 2-328 (362)
11 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.7E-44 3.7E-49 334.3 28.5 263 15-332 2-293 (326)
12 cd05490 Cathepsin_D2 Cathepsin 100.0 1.9E-44 4.2E-49 334.0 28.7 267 15-331 5-289 (325)
13 cd05485 Cathepsin_D_like Cathe 100.0 5.8E-44 1.3E-48 331.1 27.9 267 15-331 10-293 (329)
14 cd05487 renin_like Renin stimu 100.0 1.9E-43 4.2E-48 327.4 27.7 265 15-331 7-289 (326)
15 cd06098 phytepsin Phytepsin, a 100.0 5E-43 1.1E-47 323.3 29.5 252 15-330 9-280 (317)
16 PTZ00147 plasmepsin-1; Provisi 100.0 7.2E-43 1.6E-47 332.9 27.4 272 8-332 127-416 (453)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 6.2E-42 1.3E-46 325.9 28.8 273 6-331 124-414 (450)
18 cd05473 beta_secretase_like Be 100.0 8.8E-41 1.9E-45 314.1 28.4 278 16-329 3-310 (364)
19 cd06097 Aspergillopepsin_like 100.0 1.3E-40 2.9E-45 301.8 24.6 213 17-257 1-225 (278)
20 cd05474 SAP_like SAPs, pepsin- 100.0 3E-40 6.5E-45 302.0 23.8 239 15-333 1-265 (295)
21 cd05476 pepsin_A_like_plant Ch 100.0 1.1E-39 2.4E-44 293.7 25.6 214 16-332 1-231 (265)
22 cd05471 pepsin_like Pepsin-lik 100.0 1.9E-38 4.1E-43 287.8 26.8 239 17-299 1-256 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 5.7E-39 1.2E-43 296.1 16.7 265 16-331 1-281 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7.8E-30 1.7E-34 212.7 16.1 156 17-189 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 1.4E-22 2.9E-27 157.7 13.4 108 19-152 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.7 2.5E-17 5.3E-22 137.2 10.4 118 211-332 1-128 (161)
27 cd05483 retropepsin_like_bacte 98.0 3.1E-05 6.8E-10 57.9 7.3 93 15-153 1-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.0 0.0049 1.1E-07 48.5 8.7 94 15-154 10-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.4 0.031 6.7E-07 40.8 8.7 89 19-153 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.5 0.14 3.1E-06 40.3 9.0 30 15-46 15-44 (124)
31 cd05484 retropepsin_like_LTR_2 92.6 0.15 3.3E-06 37.6 3.6 28 17-46 1-28 (91)
32 PF13975 gag-asp_proteas: gag- 88.5 0.82 1.8E-05 32.1 4.0 30 15-46 7-36 (72)
33 PF13650 Asp_protease_2: Aspar 86.5 1.3 2.7E-05 32.0 4.2 30 218-252 2-31 (90)
34 PF13975 gag-asp_proteas: gag- 85.1 1.9 4.1E-05 30.3 4.4 30 218-252 12-41 (72)
35 PF00077 RVP: Retroviral aspar 84.6 1.5 3.3E-05 32.6 4.0 27 18-46 7-33 (100)
36 cd05484 retropepsin_like_LTR_2 84.2 1.9 4.1E-05 31.6 4.3 30 218-252 4-33 (91)
37 COG3577 Predicted aspartyl pro 82.0 7.2 0.00016 33.3 7.2 76 15-128 104-179 (215)
38 TIGR02281 clan_AA_DTGA clan AA 81.9 2.9 6.2E-05 32.7 4.6 36 209-252 9-44 (121)
39 PF11925 DUF3443: Protein of u 81.1 15 0.00033 34.3 9.6 58 96-155 82-149 (370)
40 cd05483 retropepsin_like_bacte 79.9 4.1 8.8E-05 29.6 4.7 30 218-252 6-35 (96)
41 cd06095 RP_RTVL_H_like Retrope 77.0 4.2 9.1E-05 29.5 3.9 29 219-252 3-31 (86)
42 cd05479 RP_DDI RP_DDI; retrope 71.1 7.3 0.00016 30.5 4.3 30 218-252 20-49 (124)
43 cd06095 RP_RTVL_H_like Retrope 70.5 5.9 0.00013 28.7 3.4 25 20-46 2-26 (86)
44 PF00077 RVP: Retroviral aspar 70.3 5.1 0.00011 29.7 3.1 27 218-249 9-35 (100)
45 cd05482 HIV_retropepsin_like R 66.2 9.1 0.0002 28.0 3.6 25 20-46 2-26 (87)
46 cd05481 retropepsin_like_LTR_1 62.0 10 0.00022 28.0 3.2 31 219-253 3-33 (93)
47 PF12384 Peptidase_A2B: Ty3 tr 60.4 13 0.00028 30.7 3.7 28 19-46 35-62 (177)
48 PF09668 Asp_protease: Asparty 58.4 18 0.0004 28.4 4.2 30 15-46 23-52 (124)
49 TIGR03698 clan_AA_DTGF clan AA 55.3 10 0.00022 28.8 2.3 21 231-251 17-38 (107)
50 COG5550 Predicted aspartyl pro 53.5 11 0.00023 29.5 2.1 20 233-252 29-49 (125)
51 PF09668 Asp_protease: Asparty 49.7 27 0.00058 27.5 3.9 29 218-251 28-56 (124)
52 COG3577 Predicted aspartyl pro 48.9 54 0.0012 28.1 5.8 43 199-251 95-137 (215)
53 cd06098 phytepsin Phytepsin, a 40.8 40 0.00086 30.9 4.3 40 7-46 178-227 (317)
54 TIGR03698 clan_AA_DTGF clan AA 39.9 41 0.00088 25.5 3.5 26 19-44 2-32 (107)
55 PF08284 RVP_2: Retroviral asp 39.4 45 0.00098 26.5 3.8 30 15-46 20-49 (135)
56 PF12384 Peptidase_A2B: Ty3 tr 37.2 1E+02 0.0023 25.5 5.5 24 230-253 45-68 (177)
57 cd06096 Plasmepsin_5 Plasmepsi 31.3 54 0.0012 30.1 3.5 40 7-46 198-248 (326)
58 cd05485 Cathepsin_D_like Cathe 30.5 77 0.0017 29.2 4.4 40 7-46 180-227 (329)
59 PTZ00165 aspartyl protease; Pr 28.6 81 0.0018 31.0 4.4 41 6-46 294-344 (482)
60 cd05486 Cathespin_E Cathepsin 25.4 74 0.0016 29.0 3.3 39 8-46 168-215 (316)
61 cd05471 pepsin_like Pepsin-lik 25.2 89 0.0019 27.5 3.8 31 16-46 181-219 (283)
62 cd06097 Aspergillopepsin_like 24.0 1E+02 0.0022 27.5 3.9 40 7-46 166-215 (278)
63 cd05475 nucellin_like Nucellin 24.0 88 0.0019 27.8 3.5 39 8-46 145-194 (273)
64 PTZ00147 plasmepsin-1; Provisi 23.3 90 0.0019 30.4 3.6 40 7-46 305-349 (453)
65 PF12508 DUF3714: Protein of u 22.7 4.9E+02 0.011 22.3 7.5 50 210-261 101-151 (200)
66 cd05476 pepsin_A_like_plant Ch 22.3 1E+02 0.0022 27.3 3.5 18 29-46 176-193 (265)
67 cd05490 Cathepsin_D2 Cathepsin 21.4 1.1E+02 0.0024 28.0 3.6 39 8-46 176-223 (325)
68 PF13752 DUF4165: Domain of un 20.8 1.7E+02 0.0038 22.9 4.0 49 185-238 74-122 (124)
69 cd05473 beta_secretase_like Be 20.1 1.2E+02 0.0026 28.4 3.6 39 8-46 177-228 (364)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.2e-50 Score=386.70 Aligned_cols=295 Identities=27% Similarity=0.510 Sum_probs=240.8
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCC----cccCCcccccCCCCCCCCCCCCCCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPND 90 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S----~~~c~~~~C~~~~~~~~~~~~~~~~ 90 (335)
..|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|||++| .++|.++.|..++. ...|... +
T Consensus 83 ~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~-~ 158 (431)
T PLN03146 83 GEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE-N 158 (431)
T ss_pred ccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC-C
Confidence 68999999999999999999999999999999 999999888999999998 39999999987653 2346553 5
Q ss_pred CceeEEEeCCCCeEEEEEEEEEEEeeecCC-cccccceEEeceeecCCCCCCCCCCCceEEeeCCCCCchHHHHhhcCcc
Q 019819 91 QCDYEIEYGDGGSSIGALVTDLFPLRFSNG-SVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLI 169 (335)
Q Consensus 91 ~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g-~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i 169 (335)
.|.|.+.|++|+.+.|.+++|+|+|+...+ ...++++.|||++...+.+. ...+||||||++..|+++||..+ +
T Consensus 159 ~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~--~ 233 (431)
T PLN03146 159 TCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS--I 233 (431)
T ss_pred CCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh--h
Confidence 799999999998889999999999964322 23578999999998765442 35899999999999999999764 5
Q ss_pred cceeeeeecc-----CCceeEEeCCCCCCC-CCceeeeceeCCCCCCceEEEeeEEEecCEEeecCC--------CcEEE
Q 019819 170 RNVIGHCIGQ-----NGRGVLFLGDGKVPS-SGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKD--------LTLIF 235 (335)
Q Consensus 170 ~~~Fs~~l~~-----~~~g~l~fG~~~~~~-~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~--------~~~ii 235 (335)
.++||+||.+ ...|.|+||+..+.. ..+.|+|++.+.. ..+|.|.|++|.||++.+.++. ..+||
T Consensus 234 ~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ii 312 (431)
T PLN03146 234 GGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIII 312 (431)
T ss_pred CCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEE
Confidence 5699999962 247999999864443 4589999986432 4789999999999999886533 47999
Q ss_pred ecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeE
Q 019819 236 DSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAY 315 (335)
Q Consensus 236 DtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y 315 (335)
||||++++||+++|++|.+++.+.+...... .....++.||... . . ..+|+|+|+|+| ++++|++++|
T Consensus 313 DSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~C~~~~--~--~--~~~P~i~~~F~G----a~~~l~~~~~ 380 (431)
T PLN03146 313 DSGTTLTLLPSDFYSELESAVEEAIGGERVS--DPQGLLSLCYSST--S--D--IKLPIITAHFTG----ADVKLQPLNT 380 (431)
T ss_pred eCCccceecCHHHHHHHHHHHHHHhccccCC--CCCCCCCccccCC--C--C--CCCCeEEEEECC----CeeecCccee
Confidence 9999999999999999999999988632211 1223467899742 1 1 258999999987 8999999999
Q ss_pred EEEEeCCCEEEEEEecC
Q 019819 316 LVISVSTSIIIIAYLTG 332 (335)
Q Consensus 316 ~~~~~~~~~~cl~~~~g 332 (335)
++...+ +..|++++++
T Consensus 381 ~~~~~~-~~~Cl~~~~~ 396 (431)
T PLN03146 381 FVKVSE-DLVCFAMIPT 396 (431)
T ss_pred EEEcCC-CcEEEEEecC
Confidence 997654 5789999865
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-48 Score=366.00 Aligned_cols=297 Identities=30% Similarity=0.566 Sum_probs=241.6
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCC-CCCCCCCCCCCCCCC----cccCCcccccCCCCCCCCCCCCCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCT-GCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPN 89 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~-~C~~~~~~~f~p~~S----~~~c~~~~C~~~~~~~~~~~~~~~ 89 (335)
+.|+++|.||||||++.|++||||+++||+|. +|. .|..+.++.|+|++| .+.|.+..|...... |...
T Consensus 45 ~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~----~~~~- 118 (398)
T KOG1339|consen 45 GEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS----CSPN- 118 (398)
T ss_pred cccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCccccccccC----cccC-
Confidence 78999999999999999999999999999999 999 798665566999998 499999999987632 4443
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCCCchHHHHhhcCcc
Q 019819 90 DQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLI 169 (335)
Q Consensus 90 ~~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i 169 (335)
+.|.|.+.|++|+.++|.+++|+|+++..+ ...++++.|||+..+.+.+... ...+||||||++..++..|+......
T Consensus 119 ~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~~~~~-~~~dGIlGLg~~~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 119 SSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGSFGLF-AAFDGILGLGRGSLSVPSQLPSFYNA 196 (398)
T ss_pred CcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccccccc-cccceEeecCCCCccceeecccccCC
Confidence 899999999998799999999999996322 2567789999999986642111 46899999999999999999988776
Q ss_pred cceeeeeeccC-----CceeEEeCCCCC--CCCCceeeeceeCCCCCCceEEEeeEEEecCEE------eecCCCcEEEe
Q 019819 170 RNVIGHCIGQN-----GRGVLFLGDGKV--PSSGVAWTPMLQNSADLKHYILGPAELLYSGKS------CGLKDLTLIFD 236 (335)
Q Consensus 170 ~~~Fs~~l~~~-----~~g~l~fG~~~~--~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~------~~~~~~~~iiD 236 (335)
.++||+||.+. .+|.|+||+.+. ..+.+.|+||..+.. .+|.|.+++|.|+++. ...+...+|+|
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiD 274 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIID 274 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCccCCCcceEecCCCCEEEE
Confidence 66999999844 479999999764 357899999998753 5999999999999843 22224889999
Q ss_pred cCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEE
Q 019819 237 SGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYL 316 (335)
Q Consensus 237 tGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~ 316 (335)
|||++++||.++|++|.++|.+... + .......+..|+...... ..+|.|+|+|++ ++.|.|++++|+
T Consensus 275 SGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~-----~~~P~i~~~f~~---g~~~~l~~~~y~ 342 (398)
T KOG1339|consen 275 SGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSG-----VKLPDITFHFGG---GAVFSLPPKNYL 342 (398)
T ss_pred CCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCc-----ccCCcEEEEECC---CcEEEeCccceE
Confidence 9999999999999999999998751 1 111234556899863211 248999999996 499999999999
Q ss_pred EEEeCCCEEEEEEecCC
Q 019819 317 VISVSTSIIIIAYLTGK 333 (335)
Q Consensus 317 ~~~~~~~~~cl~~~~g~ 333 (335)
+....+...|++++.+.
T Consensus 343 ~~~~~~~~~Cl~~~~~~ 359 (398)
T KOG1339|consen 343 VEVSDGGGVCLAFFNGM 359 (398)
T ss_pred EEECCCCCceeeEEecC
Confidence 98766444499987764
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.3e-46 Score=341.27 Aligned_cols=255 Identities=28% Similarity=0.480 Sum_probs=209.5
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCceeE
Q 019819 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 95 (335)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~ 95 (335)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c------------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC------------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC------------------------------------------Ceee
Confidence 5999999999999999999999999999876 44 2689
Q ss_pred EEeCCCCeEEEEEEEEEEEeeecCCcc-cccceEEeceeecCCCCCCCCCCCceEEeeCCCCCchHHHHhhcCcccceee
Q 019819 96 IEYGDGGSSIGALVTDLFPLRFSNGSV-FNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIG 174 (335)
Q Consensus 96 ~~Y~~g~~~~G~~~~D~v~~~~~~g~~-~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs 174 (335)
+.|++|+.++|.+++|+|+|+ +. .++++.|||+....+.+ ...+||||||+...+++.||..+ .+++||
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig----~~~~~~~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql~~~--~~~~FS 107 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLG----SSDVVPGFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQTASS--YGGVFS 107 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeC----CCCccCCEEEECCccCCCcc----CCCCEEEECCCCcchHHHHhhHh--hcCceE
Confidence 999999778999999999994 44 68899999999876543 36899999999999999998765 478999
Q ss_pred eeecc---CCceeEEeCCCCCCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecC-----CCcEEEecCCcceeeCH
Q 019819 175 HCIGQ---NGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-----DLTLIFDSGASYAYFTS 246 (335)
Q Consensus 175 ~~l~~---~~~g~l~fG~~~~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~-----~~~~iiDtGt~~~~lp~ 246 (335)
+||.+ ..+|+|+||+++...+++.|+|+..++....+|.|+|++|.|+++.+... ...+|+||||++++||+
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred EEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 99974 45899999998655789999999876544578999999999999988652 46899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEEEeCCCEEE
Q 019819 247 RVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISVSTSIII 326 (335)
Q Consensus 247 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~~~~~~~~c 326 (335)
++|++|.+++.++.... .+......++.||..+... ...+|+|+|+|++ +++++|++++|++....++..|
T Consensus 188 ~~~~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~~C 258 (299)
T cd05472 188 SAYAALRDAFRAAMAAY--PRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQVC 258 (299)
T ss_pred HHHHHHHHHHHHHhccC--CCCCCCCCCCccCcCCCCc----CCccCCEEEEECC---CCEEEeCcccEEEEecCCCCEE
Confidence 99999999999876532 1211222344698753221 1358999999985 4999999999999544556789
Q ss_pred EEEecC
Q 019819 327 IAYLTG 332 (335)
Q Consensus 327 l~~~~g 332 (335)
++|...
T Consensus 259 ~~~~~~ 264 (299)
T cd05472 259 LAFAGT 264 (299)
T ss_pred EEEeCC
Confidence 998875
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=6.7e-46 Score=342.60 Aligned_cols=269 Identities=19% Similarity=0.314 Sum_probs=217.3
Q ss_pred eee----ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCC
Q 019819 12 PIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKH 87 (335)
Q Consensus 12 Pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~ 87 (335)
||+ ..|+++|+||+|+|++.|+|||||+++||+|. .|..|.++.++.|+|++|+ ++..
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Ss-----------------t~~~ 63 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSS-----------------TYQS 63 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCc-----------------ceee
Confidence 666 78999999999999999999999999999999 8987666678999999883 2222
Q ss_pred CCCCceeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCC------CchHH
Q 019819 88 PNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVS 161 (335)
Q Consensus 88 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ 161 (335)
..+.+.+.|++| ++.|.+++|+|+| |+..++++.|||+....+.+. .....+||||||++. .++++
T Consensus 64 --~~~~~~~~yg~g-s~~G~~~~D~v~i----g~~~i~~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (317)
T cd05478 64 --TGQPLSIQYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSFF-YYAPFDGILGLAYPSIASSGATPVFD 135 (317)
T ss_pred --CCcEEEEEECCc-eEEEEEeeeEEEE----CCEEECCEEEEEEEecCcccc-ccccccceeeeccchhcccCCCCHHH
Confidence 356899999999 5899999999999 466789999999987654431 113579999999864 35899
Q ss_pred HHhhcCcc-cceeeeeeccC--CceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecC-CCcEEE
Q 019819 162 QLREYGLI-RNVIGHCIGQN--GRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-DLTLIF 235 (335)
Q Consensus 162 ql~~~g~i-~~~Fs~~l~~~--~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~-~~~~ii 235 (335)
+|+++|+| +++||+||.+. .+|+|+||+++ +..+++.|+|+.. ..+|.|.+++|.|+++.+... +..+||
T Consensus 136 ~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~~~~ii 211 (317)
T cd05478 136 NMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGGCQAIV 211 (317)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCCCEEEE
Confidence 99999999 89999999853 46999999975 3478999999964 378999999999999988653 468999
Q ss_pred ecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeE
Q 019819 236 DSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAY 315 (335)
Q Consensus 236 DtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y 315 (335)
||||++++||++++++|.+++.+.... ......+|+.. ..+|.|+|+|+| ++++|||++|
T Consensus 212 DTGts~~~lp~~~~~~l~~~~~~~~~~-------~~~~~~~C~~~---------~~~P~~~f~f~g----~~~~i~~~~y 271 (317)
T cd05478 212 DTGTSLLVGPSSDIANIQSDIGASQNQ-------NGEMVVNCSSI---------SSMPDVVFTING----VQYPLPPSAY 271 (317)
T ss_pred CCCchhhhCCHHHHHHHHHHhCCcccc-------CCcEEeCCcCc---------ccCCcEEEEECC----EEEEECHHHh
Confidence 999999999999999999988553221 11112357642 358999999977 9999999999
Q ss_pred EEEEeCCCEEEEEEecC
Q 019819 316 LVISVSTSIIIIAYLTG 332 (335)
Q Consensus 316 ~~~~~~~~~~cl~~~~g 332 (335)
++.. +..|.++|++.
T Consensus 272 ~~~~--~~~C~~~~~~~ 286 (317)
T cd05478 272 ILQD--QGSCTSGFQSM 286 (317)
T ss_pred eecC--CCEEeEEEEeC
Confidence 9864 34555567763
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.5e-45 Score=353.86 Aligned_cols=272 Identities=21% Similarity=0.393 Sum_probs=216.7
Q ss_pred eEEeee----ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCC
Q 019819 9 FFFPIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPR 84 (335)
Q Consensus 9 ~~~Pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~ 84 (335)
...||. .+|+++|+||||||++.|+|||||+++||+|. .|..|.+..++.|+|++|+ ++.
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SS---------------Ty~ 172 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSS---------------TYT 172 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccC---------------CcE
Confidence 567777 78999999999999999999999999999999 8987665678999999984 111
Q ss_pred C--CCCCCCceeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCC------
Q 019819 85 C--KHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ 156 (335)
Q Consensus 85 ~--~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------ 156 (335)
- ... ....+.++|++| .+.|.+++|+|+| |+..++++.||+++...+.. +....+|||||||++.
T Consensus 173 ~~~~~~-~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~s~~~-f~~~~~DGILGLg~~~~s~~s~ 245 (482)
T PTZ00165 173 KLKLGD-ESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEESLHP-FADLPFDGLVGLGFPDKDFKES 245 (482)
T ss_pred ecCCCC-ccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEeccccc-cccccccceeecCCCccccccc
Confidence 1 110 122678999999 7889999999999 56779999999999864421 2225789999999864
Q ss_pred ---CchHHHHhhcCcc-cceeeeeecc--CCceeEEeCCCCC--C--CCCceeeeceeCCCCCCceEEEeeEEEecCEEe
Q 019819 157 ---ISIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGKV--P--SSGVAWTPMLQNSADLKHYILGPAELLYSGKSC 226 (335)
Q Consensus 157 ---~s~~~ql~~~g~i-~~~Fs~~l~~--~~~g~l~fG~~~~--~--~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~ 226 (335)
.+++++|.+||+| +++||+||.+ ..+|+|+|||++. . .+++.|+|+.. ..+|+|.+++|.++++.+
T Consensus 246 ~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~ 321 (482)
T PTZ00165 246 KKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSL 321 (482)
T ss_pred CCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEe
Confidence 4678999999999 8999999973 3579999999853 2 46899999976 379999999999999876
Q ss_pred ec--CCCcEEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCC-C
Q 019819 227 GL--KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNR-R 303 (335)
Q Consensus 227 ~~--~~~~~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~-~ 303 (335)
.. ....+|+||||+++++|++++++|.+++.+. ..|++. +.+|+|+|+|+|. +
T Consensus 322 ~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~---------------~~C~~~---------~~lP~itf~f~g~~g 377 (482)
T PTZ00165 322 GFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE---------------EDCSNK---------DSLPRISFVLEDVNG 377 (482)
T ss_pred eecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------cccccc---------ccCCceEEEECCCCC
Confidence 54 4578999999999999999999998877321 258753 3589999999861 2
Q ss_pred CceEEEeCCCeEEEEE---eCCC-EEEEEEec
Q 019819 304 NSVRLVVPPEAYLVIS---VSTS-IIIIAYLT 331 (335)
Q Consensus 304 ~~~~~~l~~~~y~~~~---~~~~-~~cl~~~~ 331 (335)
..++|+|+|++|+++. ..++ .|-++|+.
T Consensus 378 ~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~ 409 (482)
T PTZ00165 378 RKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIP 409 (482)
T ss_pred ceEEEEEchHHeeeecccCCCCCCeEEEEEEE
Confidence 2359999999999974 2233 45578875
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.6e-45 Score=337.97 Aligned_cols=265 Identities=18% Similarity=0.347 Sum_probs=214.9
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
..|+++|+||||||++.|+|||||+++||+|. .|..+.+..++.|+|++|+ ++.. ..|.|
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~Ss-----------------T~~~--~~~~~ 61 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSS-----------------TYST--NGETF 61 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCC-----------------CceE--CCcEE
Confidence 37999999999999999999999999999999 8986554567899999984 2222 46799
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCC------CCchHHHHhhcCc
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRG------RISIVSQLREYGL 168 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~------~~s~~~ql~~~g~ 168 (335)
++.|++| ++.|.+++|+|++ |+..++++.|||+....+.. +.....+||||||++ ..++++||+++|.
T Consensus 62 ~~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~ 135 (318)
T cd05477 62 SLQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETEPGTN-FVYAQFDGILGLAYPSISAGGATTVMQGMMQQNL 135 (318)
T ss_pred EEEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEeccccc-ccccceeeEeecCcccccccCCCCHHHHHHhcCC
Confidence 9999999 6899999999999 46678999999999864421 112457999999985 4678999999999
Q ss_pred c-cceeeeeeccC---CceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeec--CCCcEEEecCCc
Q 019819 169 I-RNVIGHCIGQN---GRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFDSGAS 240 (335)
Q Consensus 169 i-~~~Fs~~l~~~---~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~--~~~~~iiDtGt~ 240 (335)
| +++||+||.+. ..|.|+||+++ +..+++.|+|+.. ..+|.|.+++|.++++.+.. .+..+||||||+
T Consensus 136 i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt 211 (318)
T cd05477 136 LQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTS 211 (318)
T ss_pred cCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCCceeeECCCCc
Confidence 9 89999999843 46999999975 4468899999865 37899999999999988653 345799999999
Q ss_pred ceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEEEe
Q 019819 241 YAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISV 320 (335)
Q Consensus 241 ~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~~~ 320 (335)
+++||++++++|++++.+..... .....+|... ..+|+|+|+|+| +++.|++++|++..
T Consensus 212 ~~~lP~~~~~~l~~~~~~~~~~~-------~~~~~~C~~~---------~~~p~l~~~f~g----~~~~v~~~~y~~~~- 270 (318)
T cd05477 212 LLTAPQQVMSTLMQSIGAQQDQY-------GQYVVNCNNI---------QNLPTLTFTING----VSFPLPPSAYILQN- 270 (318)
T ss_pred cEECCHHHHHHHHHHhCCccccC-------CCEEEeCCcc---------ccCCcEEEEECC----EEEEECHHHeEecC-
Confidence 99999999999999886543211 1122356542 358999999987 99999999999863
Q ss_pred CCCEEEEEEec
Q 019819 321 STSIIIIAYLT 331 (335)
Q Consensus 321 ~~~~~cl~~~~ 331 (335)
.+.|.++|++
T Consensus 271 -~~~C~~~i~~ 280 (318)
T cd05477 271 -NGYCTVGIEP 280 (318)
T ss_pred -CCeEEEEEEe
Confidence 3466678864
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.4e-45 Score=338.75 Aligned_cols=264 Identities=17% Similarity=0.285 Sum_probs=209.8
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCceeEE
Q 019819 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEI 96 (335)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~ 96 (335)
|+++|+||||+|+++|+|||||+++||+|. .|..+.+..++.|+|++|+ ++.. ..|.|.+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~~~~~y~~~~Ss-----------------T~~~--~~~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACTKHNRFQPSESS-----------------TYVS--NGEAFSI 60 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccCccceECCCCCc-----------------cccc--CCcEEEE
Confidence 899999999999999999999999999999 8974333467899999983 2323 4679999
Q ss_pred EeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCCC------chHHHHhhcCcc-
Q 019819 97 EYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLREYGLI- 169 (335)
Q Consensus 97 ~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~ql~~~g~i- 169 (335)
.|++| .+.|.+++|+|+| |+..++++.|||+....+.. +.....+||||||++.. +++++|++||+|
T Consensus 61 ~Yg~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 61 QYGTG-SLTGIIGIDQVTV----EGITVQNQQFAESVSEPGST-FQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EeCCc-EEEEEeeecEEEE----CCEEEcCEEEEEeeccCccc-ccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 99999 6899999999999 46678999999987764422 12246899999998654 468899999999
Q ss_pred cceeeeeeccC----CceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeec-CCCcEEEecCCcce
Q 019819 170 RNVIGHCIGQN----GRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSGASYA 242 (335)
Q Consensus 170 ~~~Fs~~l~~~----~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~-~~~~~iiDtGt~~~ 242 (335)
+++||+||.++ ..|.|+||+++ +..+++.|+|+.. ..+|.|.+++|.|+++.+.. ....+||||||+++
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~ 210 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLI 210 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCCCEEEECCCcchh
Confidence 89999999742 47999999975 4468999999875 37899999999999987654 34689999999999
Q ss_pred eeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEEEe-C
Q 019819 243 YFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISV-S 321 (335)
Q Consensus 243 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~~~-~ 321 (335)
+||++++++|.+++.+... ......+|... +.+|+|+|+|+| ++++|+|++|++... +
T Consensus 211 ~lP~~~~~~l~~~~~~~~~--------~~~~~~~C~~~---------~~~p~i~f~f~g----~~~~l~~~~y~~~~~~~ 269 (316)
T cd05486 211 TGPSGDIKQLQNYIGATAT--------DGEYGVDCSTL---------SLMPSVTFTING----IPYSLSPQAYTLEDQSD 269 (316)
T ss_pred hcCHHHHHHHHHHhCCccc--------CCcEEEecccc---------ccCCCEEEEECC----EEEEeCHHHeEEecccC
Confidence 9999999999887743211 11122357542 358999999977 999999999998752 2
Q ss_pred CCEEE-EEEec
Q 019819 322 TSIII-IAYLT 331 (335)
Q Consensus 322 ~~~~c-l~~~~ 331 (335)
++..| ++|+.
T Consensus 270 ~~~~C~~~~~~ 280 (316)
T cd05486 270 GGGYCSSGFQG 280 (316)
T ss_pred CCCEEeeEEEE
Confidence 33445 46753
No 8
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.5e-45 Score=329.50 Aligned_cols=237 Identities=56% Similarity=1.063 Sum_probs=197.9
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
+.|+++|+||||||++.|++||||+++||+|.++|..| .|.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------------------------------~c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------------------------------QCDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------------------------------cCcc
Confidence 47999999999999999999999999999984245444 3479
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCCCchHHHHhhcCcccceee
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIG 174 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs 174 (335)
.+.|++++.+.|.+++|+|+|+..+|...++++.|||+....+.+.......+||||||++..++++||.++++|+++||
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs 122 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIG 122 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEE
Confidence 99999888999999999999986656667889999999876544322225789999999999999999999998899999
Q ss_pred eeeccCCceeEEeCCCCCCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecCCCcEEEecCCcceeeCHHHHHHHHH
Q 019819 175 HCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVS 254 (335)
Q Consensus 175 ~~l~~~~~g~l~fG~~~~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l~~ 254 (335)
+||.+..+|.|+||+..+..+++.|+|+..++. ..+|.|++.+|+|+++.+......+|+||||++++||+++|
T Consensus 123 ~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y----- 196 (273)
T cd05475 123 HCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY----- 196 (273)
T ss_pred EEccCCCCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc-----
Confidence 999876679999998666678899999987642 47899999999999987665567899999999999998765
Q ss_pred HHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEEEeCCCEEEEEEecCC
Q 019819 255 LIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISVSTSIIIIAYLTGK 333 (335)
Q Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~~~~~~~~cl~~~~g~ 333 (335)
+|+|+|+|++...+++++|+|++|++...+ +..|++++++.
T Consensus 197 -------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~-~~~Cl~~~~~~ 237 (273)
T cd05475 197 -------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK-GNVCLGILNGS 237 (273)
T ss_pred -------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC-CCEEEEEecCC
Confidence 378999998721127999999999997543 46899998764
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=7e-45 Score=336.19 Aligned_cols=269 Identities=19% Similarity=0.312 Sum_probs=214.1
Q ss_pred Eeee----ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCC
Q 019819 11 FPIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCK 86 (335)
Q Consensus 11 ~Pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~ 86 (335)
+||+ ..|+++|+||||+|++.|+|||||+++||+|. +|..+.+..++.|+|++|+ ++.
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Ss-----------------t~~ 62 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASS-----------------TYK 62 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCc-----------------cee
Confidence 3666 68999999999999999999999999999999 8975444467899998883 232
Q ss_pred CCCCCceeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCCCc------hH
Q 019819 87 HPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRIS------IV 160 (335)
Q Consensus 87 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~ 160 (335)
. +.|.+.+.|++| ++.|.+++|+|+| |+..++++.|||+....+.. +.....+||||||++..+ .+
T Consensus 63 ~--~~~~~~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~a~~~~g~~-~~~~~~dGilGLg~~~~s~~~~~~~~ 134 (320)
T cd05488 63 A--NGTEFKIQYGSG-SLEGFVSQDTLSI----GDLTIKKQDFAEATSEPGLA-FAFGKFDGILGLAYDTISVNKIVPPF 134 (320)
T ss_pred e--CCCEEEEEECCc-eEEEEEEEeEEEE----CCEEECCEEEEEEecCCCcc-eeeeeeceEEecCCccccccCCCCHH
Confidence 2 477999999999 5899999999999 46678899999998764431 122467999999997643 45
Q ss_pred HHHhhcCcc-cceeeeeecc--CCceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecCCCcEEE
Q 019819 161 SQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIF 235 (335)
Q Consensus 161 ~ql~~~g~i-~~~Fs~~l~~--~~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ii 235 (335)
.+|+++|+| +++||+||.+ ...|.|+||+++ +..++++|+|+.. ..+|.|.+++|.++++.+...+..++|
T Consensus 135 ~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~~~~iv 210 (320)
T cd05488 135 YNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELENTGAAI 210 (320)
T ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCCCeEEE
Confidence 688999999 8999999985 367999999975 3468999999975 378999999999999988777789999
Q ss_pred ecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeE
Q 019819 236 DSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAY 315 (335)
Q Consensus 236 DtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y 315 (335)
||||++++||++++++|.+++.+.... ......+|+.. ..+|.|+|+|+| ++++|+|++|
T Consensus 211 DSGtt~~~lp~~~~~~l~~~~~~~~~~-------~~~~~~~C~~~---------~~~P~i~f~f~g----~~~~i~~~~y 270 (320)
T cd05488 211 DTGTSLIALPSDLAEMLNAEIGAKKSW-------NGQYTVDCSKV---------DSLPDLTFNFDG----YNFTLGPFDY 270 (320)
T ss_pred cCCcccccCCHHHHHHHHHHhCCcccc-------CCcEEeecccc---------ccCCCEEEEECC----EEEEECHHHh
Confidence 999999999999999998888543210 11112356542 358999999987 9999999999
Q ss_pred EEEEeCCCEEEEEEec
Q 019819 316 LVISVSTSIIIIAYLT 331 (335)
Q Consensus 316 ~~~~~~~~~~cl~~~~ 331 (335)
+++. ++.|.+.|+.
T Consensus 271 ~~~~--~g~C~~~~~~ 284 (320)
T cd05488 271 TLEV--SGSCISAFTG 284 (320)
T ss_pred eecC--CCeEEEEEEE
Confidence 9853 2354445543
No 10
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.6e-44 Score=335.21 Aligned_cols=292 Identities=21% Similarity=0.373 Sum_probs=223.1
Q ss_pred eCCCCcE-EEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCC---------CCCCCCCCCCc
Q 019819 23 VGKPPKL-FDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPN---------PPRCKHPNDQC 92 (335)
Q Consensus 23 iGtP~q~-~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~---------~~~~~~~~~~~ 92 (335)
+|+|..+ +.|++||||+++||+|. +|. ...|. .++|.+..|+..++.. ...|.+ +.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~--~~C 68 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCGN--NTC 68 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCCC----ccCcCChhhccccccCCCccccCCCCCCCCC--CcC
Confidence 5888777 99999999999999988 552 12333 4899999998765431 124533 568
Q ss_pred eeEEE-eCCCCeEEEEEEEEEEEeeecCCc----ccccceEEeceeecCCCCCCCCCCCceEEeeCCCCCchHHHHhhcC
Q 019819 93 DYEIE-YGDGGSSIGALVTDLFPLRFSNGS----VFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYG 167 (335)
Q Consensus 93 ~~~~~-Y~~g~~~~G~~~~D~v~~~~~~g~----~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g 167 (335)
.|... |++|+...|.+++|+|+|+..+|. .+++++.|||+......... ...|||||||++++|++.||..++
T Consensus 69 ~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~--~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 69 TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP--PGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc--cccccccccCCCccchHHHhhhhc
Confidence 88765 778989999999999999765544 26889999999886321111 458999999999999999998876
Q ss_pred cccceeeeeecc--CCceeEEeCCCCC--------CCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecC--------
Q 019819 168 LIRNVIGHCIGQ--NGRGVLFLGDGKV--------PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-------- 229 (335)
Q Consensus 168 ~i~~~Fs~~l~~--~~~g~l~fG~~~~--------~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~-------- 229 (335)
.++++||+||.+ ..+|.|+||+.+. ..+++.|+||+.++..+.+|.|+|++|.|+++.+.++
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 568999999974 3579999998652 1378999999987544579999999999999988652
Q ss_pred --CCcEEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceE
Q 019819 230 --DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVR 307 (335)
Q Consensus 230 --~~~~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~ 307 (335)
...+||||||++++||+++|++|.+++.+++...+.... .....+.||........++...+|+|+|+|+|+ +++
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~--g~~ 303 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASALGNTRLGYAVPAIDLVLDGG--GVN 303 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCcCCcccccccceEEEEEeCC--CeE
Confidence 357999999999999999999999999988764322111 112236899853221112224689999999862 399
Q ss_pred EEeCCCeEEEEEeCCCEEEEEEecCC
Q 019819 308 LVVPPEAYLVISVSTSIIIIAYLTGK 333 (335)
Q Consensus 308 ~~l~~~~y~~~~~~~~~~cl~~~~g~ 333 (335)
|+|+|++|+++..+ +..|++|+++.
T Consensus 304 ~~l~~~ny~~~~~~-~~~Cl~f~~~~ 328 (362)
T cd05489 304 WTIFGANSMVQVKG-GVACLAFVDGG 328 (362)
T ss_pred EEEcCCceEEEcCC-CcEEEEEeeCC
Confidence 99999999998654 46789998754
No 11
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.7e-44 Score=334.35 Aligned_cols=263 Identities=23% Similarity=0.427 Sum_probs=211.4
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCC----cccCCcccccCCCCCCCCCCCCCCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPND 90 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S----~~~c~~~~C~~~~~~~~~~~~~~~~ 90 (335)
+.|+++|+||||+|++.|+|||||+++||+|. +|.+|..+.++.|+|++| .+.|.+..|.. ...|.+ +
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~~--~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCLN--N 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCCC--C
Confidence 47999999999999999999999999999999 999999888899999988 38899999953 234544 6
Q ss_pred CceeEEEeCCCCeEEEEEEEEEEEeeecCCc---ccccceEEeceeecCCCCCCCCCCCceEEeeCCCCC----chHHHH
Q 019819 91 QCDYEIEYGDGGSSIGALVTDLFPLRFSNGS---VFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI----SIVSQL 163 (335)
Q Consensus 91 ~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~---~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~----s~~~ql 163 (335)
.|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+..+.+.+.. ...+||||||+... +...+|
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GilGLg~~~~~~~~~~~~~l 151 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLT--QQATGILGLSLTKNNGLPTPIILL 151 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccc--cccceEEEccCCcccccCchhHHH
Confidence 8999999999988999999999999632110 01235789999987665422 56899999999753 233345
Q ss_pred hhcCcc-c--ceeeeeeccCCceeEEeCCCCCC--C----------CCceeeeceeCCCCCCceEEEeeEEEecCEE---
Q 019819 164 REYGLI-R--NVIGHCIGQNGRGVLFLGDGKVP--S----------SGVAWTPMLQNSADLKHYILGPAELLYSGKS--- 225 (335)
Q Consensus 164 ~~~g~i-~--~~Fs~~l~~~~~g~l~fG~~~~~--~----------~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~--- 225 (335)
.+++.+ . ++||+||.+ ..|+|+||+++.. . +++.|+|+... .+|.|.+++|.++++.
T Consensus 152 ~~~~~~~~~~~~FS~~l~~-~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~----~~y~v~l~~i~vg~~~~~~ 226 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSE-DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK----YYYYVKLEGLSVYGTTSNS 226 (326)
T ss_pred HHhcccccCCceEEEEEcC-CCeEEEECccChhhhcccccccccccCCceEEeccCC----ceEEEEEEEEEEcccccce
Confidence 566555 4 899999985 4799999997532 2 78999998763 7899999999999885
Q ss_pred eecCCCcEEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCc
Q 019819 226 CGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNS 305 (335)
Q Consensus 226 ~~~~~~~~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~ 305 (335)
.......+|+||||++++||+++|++|.+++ |+|+|+|++ +
T Consensus 227 ~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------------P~i~~~f~~---g 267 (326)
T cd06096 227 GNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------------PTITIIFEN---N 267 (326)
T ss_pred ecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------------CcEEEEEcC---C
Confidence 2234678999999999999999999877654 689999985 4
Q ss_pred eEEEeCCCeEEEEEeCCCEEEEEEecC
Q 019819 306 VRLVVPPEAYLVISVSTSIIIIAYLTG 332 (335)
Q Consensus 306 ~~~~l~~~~y~~~~~~~~~~cl~~~~g 332 (335)
++++|+|++|++...+ ..||+++...
T Consensus 268 ~~~~i~p~~y~~~~~~-~~c~~~~~~~ 293 (326)
T cd06096 268 LKIDWKPSSYLYKKES-FWCKGGEKSV 293 (326)
T ss_pred cEEEECHHHhccccCC-ceEEEEEecC
Confidence 9999999999997543 4688887653
No 12
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.9e-44 Score=334.05 Aligned_cols=267 Identities=18% Similarity=0.273 Sum_probs=210.9
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCC--CCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCc
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC--TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQC 92 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C--~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~ 92 (335)
.+|+++|+||||+|++.|+|||||+++||+|. .|..| .+..++.|+|++|+ ++.. ..|
T Consensus 5 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~~~~~y~~~~Ss-----------------T~~~--~~~ 64 (325)
T cd05490 5 AQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACWLHHKYNSSKSS-----------------TYVK--NGT 64 (325)
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCccccCcCcCCcccCc-----------------ceee--CCc
Confidence 58999999999999999999999999999998 89732 23357899999984 2222 357
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCC------CchHHHHhhc
Q 019819 93 DYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREY 166 (335)
Q Consensus 93 ~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~ 166 (335)
.|.+.|++| .+.|.+++|+|+| |+..++++.|||+....+.. +.....+||||||++. .+++++|+++
T Consensus 65 ~~~i~Yg~G-~~~G~~~~D~v~~----g~~~~~~~~Fg~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~ 138 (325)
T cd05490 65 EFAIQYGSG-SLSGYLSQDTVSI----GGLQVEGQLFGEAVKQPGIT-FIAAKFDGILGMAYPRISVDGVTPVFDNIMAQ 138 (325)
T ss_pred EEEEEECCc-EEEEEEeeeEEEE----CCEEEcCEEEEEEeeccCCc-ccceeeeEEEecCCccccccCCCCHHHHHHhc
Confidence 999999999 6899999999999 46678999999998765421 1224689999999864 3578899999
Q ss_pred Ccc-cceeeeeeccC----CceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeec-CCCcEEEecC
Q 019819 167 GLI-RNVIGHCIGQN----GRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSG 238 (335)
Q Consensus 167 g~i-~~~Fs~~l~~~----~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~-~~~~~iiDtG 238 (335)
++| +++||+||.++ .+|+|+||+++ +..+++.|+|+.. ..+|.|++++|.|+++.... ....+|||||
T Consensus 139 g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 214 (325)
T cd05490 139 KLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKGGCEAIVDTG 214 (325)
T ss_pred CCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCCCCEEEECCC
Confidence 999 89999999742 36999999975 3468999999865 37899999999999875432 3468999999
Q ss_pred CcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEE
Q 019819 239 ASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVI 318 (335)
Q Consensus 239 t~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~ 318 (335)
|+++++|++++++|.+++.+.- .. .......|+.. ..+|+|+|+|+| ++++|+|++|+++
T Consensus 215 Tt~~~~p~~~~~~l~~~~~~~~------~~-~~~~~~~C~~~---------~~~P~i~f~fgg----~~~~l~~~~y~~~ 274 (325)
T cd05490 215 TSLITGPVEEVRALQKAIGAVP------LI-QGEYMIDCEKI---------PTLPVISFSLGG----KVYPLTGEDYILK 274 (325)
T ss_pred CccccCCHHHHHHHHHHhCCcc------cc-CCCEEeccccc---------ccCCCEEEEECC----EEEEEChHHeEEe
Confidence 9999999999999999885421 11 11233467652 358999999977 9999999999997
Q ss_pred EeC-CCEEEE-EEec
Q 019819 319 SVS-TSIIII-AYLT 331 (335)
Q Consensus 319 ~~~-~~~~cl-~~~~ 331 (335)
... ++..|+ +|+.
T Consensus 275 ~~~~~~~~C~~~~~~ 289 (325)
T cd05490 275 VSQRGTTICLSGFMG 289 (325)
T ss_pred ccCCCCCEEeeEEEE
Confidence 543 334565 5764
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.8e-44 Score=331.12 Aligned_cols=267 Identities=19% Similarity=0.303 Sum_probs=212.5
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCC--CCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCc
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCT--KPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQC 92 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~--~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~ 92 (335)
..|+++|+||||+|++.|++||||+++||+|. .|..|. +..++.|+|++|+ ++.. ..|
T Consensus 10 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss-----------------t~~~--~~~ 69 (329)
T cd05485 10 AQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACLLHNKYDSTKSS-----------------TYKK--NGT 69 (329)
T ss_pred CeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCccccCCCeECCcCCC-----------------CeEE--CCe
Confidence 78999999999999999999999999999998 897321 2356789999883 2222 467
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCCCc------hHHHHhhc
Q 019819 93 DYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRIS------IVSQLREY 166 (335)
Q Consensus 93 ~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~ 166 (335)
.|.+.|++| .+.|.+++|+|+| |+..++++.|||+..+.+.. +.....+||||||++..+ ++.||+++
T Consensus 70 ~~~i~Y~~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~q 143 (329)
T cd05485 70 EFAIQYGSG-SLSGFLSTDTVSV----GGVSVKGQTFAEAINEPGLT-FVAAKFDGILGMGYSSISVDGVVPVFYNMVNQ 143 (329)
T ss_pred EEEEEECCc-eEEEEEecCcEEE----CCEEECCEEEEEEEecCCcc-ccccccceEEEcCCccccccCCCCHHHHHHhC
Confidence 999999999 5899999999999 45668899999998764421 222468999999997544 57899999
Q ss_pred Ccc-cceeeeeeccC----CceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecCCCcEEEecCC
Q 019819 167 GLI-RNVIGHCIGQN----GRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGA 239 (335)
Q Consensus 167 g~i-~~~Fs~~l~~~----~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~iiDtGt 239 (335)
|+| +++||+||.+. ..|+|+||+.+ +..+++.|+|+.. ..+|.|.+++|.++++.+...+..+||||||
T Consensus 144 g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGt 219 (329)
T cd05485 144 KLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGGCQAIADTGT 219 (329)
T ss_pred CCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCCCcEEEEccCC
Confidence 999 89999999742 46999999975 3468999999964 3889999999999998876566789999999
Q ss_pred cceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEEE
Q 019819 240 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS 319 (335)
Q Consensus 240 ~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~~ 319 (335)
++++||++++++|.+++.+... . ......+|+.. ..+|+|+|+|+| ++++|++++|+++.
T Consensus 220 t~~~lP~~~~~~l~~~~~~~~~----~---~~~~~~~C~~~---------~~~p~i~f~fgg----~~~~i~~~~yi~~~ 279 (329)
T cd05485 220 SLIAGPVDEIEKLNNAIGAKPI----I---GGEYMVNCSAI---------PSLPDITFVLGG----KSFSLTGKDYVLKV 279 (329)
T ss_pred cceeCCHHHHHHHHHHhCCccc----c---CCcEEEecccc---------ccCCcEEEEECC----EEeEEChHHeEEEe
Confidence 9999999999999988854311 0 11123456542 347999999977 99999999999976
Q ss_pred eC-CC-EEEEEEec
Q 019819 320 VS-TS-IIIIAYLT 331 (335)
Q Consensus 320 ~~-~~-~~cl~~~~ 331 (335)
.+ ++ .|.++|+.
T Consensus 280 ~~~~~~~C~~~~~~ 293 (329)
T cd05485 280 TQMGQTICLSGFMG 293 (329)
T ss_pred cCCCCCEEeeeEEE
Confidence 53 23 44456774
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.9e-43 Score=327.38 Aligned_cols=265 Identities=15% Similarity=0.279 Sum_probs=210.9
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCC--CCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCc
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC--TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQC 92 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C--~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~ 92 (335)
..|+++|+||||+|+++|+|||||+++||++. .|..| .+..++.|+|++|+ ++.. ..|
T Consensus 7 ~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss-----------------T~~~--~~~ 66 (326)
T cd05487 7 TQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSS-----------------TYKE--NGT 66 (326)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCe-----------------eeeE--CCE
Confidence 68999999999999999999999999999998 88753 33467899999984 2222 478
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCC------CchHHHHhhc
Q 019819 93 DYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREY 166 (335)
Q Consensus 93 ~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~ 166 (335)
.|++.|++| .+.|.+++|+|+++ ...+ ++.||++...... .+.....|||||||++. .+++.+|++|
T Consensus 67 ~~~~~Yg~g-~~~G~~~~D~v~~g----~~~~-~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~q 139 (326)
T cd05487 67 EFTIHYASG-TVKGFLSQDIVTVG----GIPV-TQMFGEVTALPAI-PFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQ 139 (326)
T ss_pred EEEEEeCCc-eEEEEEeeeEEEEC----CEEe-eEEEEEEEeccCC-ccceeecceEEecCChhhcccCCCCHHHHHHhc
Confidence 999999999 69999999999994 4434 4789998875321 11124689999999864 3578899999
Q ss_pred Ccc-cceeeeeecc----CCceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecC-CCcEEEecC
Q 019819 167 GLI-RNVIGHCIGQ----NGRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-DLTLIFDSG 238 (335)
Q Consensus 167 g~i-~~~Fs~~l~~----~~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~-~~~~iiDtG 238 (335)
|+| +++||+||.+ ...|+|+||+.+ +..++++|+|+.. ..+|+|.+++|.++++.+... ...++||||
T Consensus 140 g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 215 (326)
T cd05487 140 GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCEDGCTAVVDTG 215 (326)
T ss_pred CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCCCCEEEECCC
Confidence 999 8999999974 247999999985 3478899999864 378999999999999887543 468999999
Q ss_pred CcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEE
Q 019819 239 ASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVI 318 (335)
Q Consensus 239 t~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~ 318 (335)
|++++||++++++|++++.+... ......+|... ..+|+|+|+|+| .+++|++++|+++
T Consensus 216 ts~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~~~---------~~~P~i~f~fgg----~~~~v~~~~yi~~ 274 (326)
T cd05487 216 ASFISGPTSSISKLMEALGAKER--------LGDYVVKCNEV---------PTLPDISFHLGG----KEYTLSSSDYVLQ 274 (326)
T ss_pred ccchhCcHHHHHHHHHHhCCccc--------CCCEEEecccc---------CCCCCEEEEECC----EEEEeCHHHhEEe
Confidence 99999999999999998854321 11223467652 358999999977 9999999999997
Q ss_pred EeC--CCEEEEEEec
Q 019819 319 SVS--TSIIIIAYLT 331 (335)
Q Consensus 319 ~~~--~~~~cl~~~~ 331 (335)
..+ ++.|.++|+.
T Consensus 275 ~~~~~~~~C~~~~~~ 289 (326)
T cd05487 275 DSDFSDKLCTVAFHA 289 (326)
T ss_pred ccCCCCCEEEEEEEe
Confidence 543 3456678875
No 15
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5e-43 Score=323.31 Aligned_cols=252 Identities=22% Similarity=0.354 Sum_probs=202.9
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCC---CCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCT---GCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQ 91 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~---~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~ 91 (335)
..|+++|+||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +.+ . ..
T Consensus 9 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~Ss---------------T~~--~--~~ 66 (317)
T cd06098 9 AQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKSS---------------TYK--K--NG 66 (317)
T ss_pred CEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccCC---------------Ccc--c--CC
Confidence 68999999999999999999999999999999 896 575 57889999984 222 2 34
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCC------CchHHHHhh
Q 019819 92 CDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLRE 165 (335)
Q Consensus 92 ~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~ 165 (335)
..+.+.|++| .+.|.+++|+|+| |...++++.||++..+.... +.....+||||||++. .+++.+|++
T Consensus 67 ~~~~i~Yg~G-~~~G~~~~D~v~i----g~~~v~~~~f~~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 140 (317)
T cd06098 67 TSASIQYGTG-SISGFFSQDSVTV----GDLVVKNQVFIEATKEPGLT-FLLAKFDGILGLGFQEISVGKAVPVWYNMVE 140 (317)
T ss_pred CEEEEEcCCc-eEEEEEEeeEEEE----CCEEECCEEEEEEEecCCcc-ccccccceeccccccchhhcCCCCHHHHHHh
Confidence 5899999999 6899999999999 46678999999998764321 1225689999999864 346789999
Q ss_pred cCcc-cceeeeeeccC----CceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeec--CCCcEEEe
Q 019819 166 YGLI-RNVIGHCIGQN----GRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFD 236 (335)
Q Consensus 166 ~g~i-~~~Fs~~l~~~----~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~--~~~~~iiD 236 (335)
+|+| +++||+||.+. ..|.|+||+++ +..++++|+|+.. ..+|.|.+++|.|+++.+.. ....+|+|
T Consensus 141 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~~~aivD 216 (317)
T cd06098 141 QGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCAGGCAAIAD 216 (317)
T ss_pred cCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecCCCcEEEEe
Confidence 9999 88999999732 47999999975 4578999999974 37899999999999987653 34679999
Q ss_pred cCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEE
Q 019819 237 SGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYL 316 (335)
Q Consensus 237 tGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~ 316 (335)
|||++++||++++++|. ....|+.. ..+|+|+|+|+| ++++|+|++|+
T Consensus 217 TGTs~~~lP~~~~~~i~-------------------~~~~C~~~---------~~~P~i~f~f~g----~~~~l~~~~yi 264 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN-------------------SAVDCNSL---------SSMPNVSFTIGG----KTFELTPEQYI 264 (317)
T ss_pred cCCcceeCCHHHHHhhh-------------------ccCCcccc---------ccCCcEEEEECC----EEEEEChHHeE
Confidence 99999999998776543 11358753 258999999977 99999999999
Q ss_pred EEEeCC-CEEEE-EEe
Q 019819 317 VISVST-SIIII-AYL 330 (335)
Q Consensus 317 ~~~~~~-~~~cl-~~~ 330 (335)
++..++ ...|+ +|+
T Consensus 265 ~~~~~~~~~~C~~~~~ 280 (317)
T cd06098 265 LKVGEGAAAQCISGFT 280 (317)
T ss_pred EeecCCCCCEEeceEE
Confidence 975442 23454 565
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7.2e-43 Score=332.90 Aligned_cols=272 Identities=19% Similarity=0.238 Sum_probs=211.4
Q ss_pred eeEEeee----ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCC
Q 019819 8 FFFFPIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPP 83 (335)
Q Consensus 8 ~~~~Pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~ 83 (335)
...+||. ..|+++|+||||+|++.|+|||||+++||+|. .|..|.++.++.|+|++|+ +
T Consensus 127 ~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss---------------T- 189 (453)
T PTZ00147 127 FDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK---------------T- 189 (453)
T ss_pred CCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc---------------c-
Confidence 3456776 78999999999999999999999999999999 8987666678899999984 2
Q ss_pred CCCCCCCCceeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCC-CCCCCCCceEEeeCCCCC-----
Q 019819 84 RCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPG-PLSPPDTAGVLGLGRGRI----- 157 (335)
Q Consensus 84 ~~~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~-~~~~~~~~GIlGLg~~~~----- 157 (335)
+.. ..+.|.+.|++| .+.|.+++|+|+| |+..++ ..|+++.+..+.. .......|||||||++..
T Consensus 190 -~~~--~~~~f~i~Yg~G-svsG~~~~DtVti----G~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 190 -YEK--DGTKVEMNYVSG-TVSGFFSKDLVTI----GNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred -eEE--CCCEEEEEeCCC-CEEEEEEEEEEEE----CCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 222 466999999999 6999999999999 455566 5799887654320 112246899999999754
Q ss_pred -chHHHHhhcCcc-cceeeeeecc--CCceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecCCC
Q 019819 158 -SIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDL 231 (335)
Q Consensus 158 -s~~~ql~~~g~i-~~~Fs~~l~~--~~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~ 231 (335)
+++.+|.+|++| +++||+||.+ ...|.|+|||++ +..+++.|+|+.. ..+|.|.++ +.+++.. ....
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~--~~~~ 333 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVS--SEKA 333 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEe--cCce
Confidence 467899999999 8899999974 357999999985 3478999999963 378999998 5777643 2457
Q ss_pred cEEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeC
Q 019819 232 TLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVP 311 (335)
Q Consensus 232 ~~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~ 311 (335)
.+|+||||+++++|++++++|.+++.+... .. .......|+. ..+|+|+|+|+| .+++|+
T Consensus 334 ~aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~~--~~~y~~~C~~----------~~lP~~~f~f~g----~~~~L~ 393 (453)
T PTZ00147 334 NVIVDSGTSVITVPTEFLNKFVESLDVFKV----PF--LPLYVTTCNN----------TKLPTLEFRSPN----KVYTLE 393 (453)
T ss_pred eEEECCCCchhcCCHHHHHHHHHHhCCeec----CC--CCeEEEeCCC----------CCCCeEEEEECC----EEEEEC
Confidence 899999999999999999999998854321 11 1112346764 248999999987 899999
Q ss_pred CCeEEEEEeC-CCEEE-EEEecC
Q 019819 312 PEAYLVISVS-TSIII-IAYLTG 332 (335)
Q Consensus 312 ~~~y~~~~~~-~~~~c-l~~~~g 332 (335)
|++|+.+..+ ++..| ++|++.
T Consensus 394 p~~yi~~~~~~~~~~C~~~i~~~ 416 (453)
T PTZ00147 394 PEYYLQPIEDIGSALCMLNIIPI 416 (453)
T ss_pred HHHheeccccCCCcEEEEEEEEC
Confidence 9999986433 33345 467753
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=6.2e-42 Score=325.88 Aligned_cols=273 Identities=19% Similarity=0.260 Sum_probs=208.8
Q ss_pred cceeEEeee----ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCC
Q 019819 6 IEFFFFPIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPN 81 (335)
Q Consensus 6 ~~~~~~Pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~ 81 (335)
.+.-.+||. .+|+++|+||||+|++.|+|||||+++||+|. .|..+.++.++.|+|++|+
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~Ss--------------- 187 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSK--------------- 187 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCc---------------
Confidence 344456775 78999999999999999999999999999999 8985444577899999883
Q ss_pred CCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCC-CCCCCCCceEEeeCCCCC---
Q 019819 82 PPRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPG-PLSPPDTAGVLGLGRGRI--- 157 (335)
Q Consensus 82 ~~~~~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~-~~~~~~~~GIlGLg~~~~--- 157 (335)
++.. ..+.+.+.|++| .+.|.+++|+|+| |+..++ ..|+++.+..... .+.....|||||||++..
T Consensus 188 --T~~~--~~~~~~i~YG~G-sv~G~~~~Dtv~i----G~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 188 --SYEK--DGTKVDITYGSG-TVKGFFSKDLVTL----GHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred --cccc--CCcEEEEEECCc-eEEEEEEEEEEEE----CCEEEc-cEEEEEEeccccccceecccccceecccCCccccc
Confidence 2222 467999999999 5999999999999 455555 5888887653211 111246899999998753
Q ss_pred ---chHHHHhhcCcc-cceeeeeecc--CCceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecC
Q 019819 158 ---SIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK 229 (335)
Q Consensus 158 ---s~~~ql~~~g~i-~~~Fs~~l~~--~~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~ 229 (335)
+++.+|++||+| +++||+||.. ...|.|+|||++ +..+++.|+|+.. ..+|.|.++ +.++.... .
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~--~ 330 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTM--Q 330 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceec--c
Confidence 578899999999 8899999974 357999999986 3478999999964 378999998 67765443 4
Q ss_pred CCcEEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEE
Q 019819 230 DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLV 309 (335)
Q Consensus 230 ~~~~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~ 309 (335)
...+|+||||+++++|+++++++.+++..... .. ......+|+. ..+|+|+|+|+| .+++
T Consensus 331 ~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~~--~~~y~~~C~~----------~~lP~i~F~~~g----~~~~ 390 (450)
T PTZ00013 331 KANVIVDSGTTTITAPSEFLNKFFANLNVIKV----PF--LPFYVTTCDN----------KEMPTLEFKSAN----NTYT 390 (450)
T ss_pred ccceEECCCCccccCCHHHHHHHHHHhCCeec----CC--CCeEEeecCC----------CCCCeEEEEECC----EEEE
Confidence 56899999999999999999999888754321 11 1112346754 247999999987 8999
Q ss_pred eCCCeEEEEEe--CCCEEEEEEec
Q 019819 310 VPPEAYLVISV--STSIIIIAYLT 331 (335)
Q Consensus 310 l~~~~y~~~~~--~~~~~cl~~~~ 331 (335)
|+|++|+.+.. +++.|-+++++
T Consensus 391 L~p~~Yi~~~~~~~~~~C~~~i~~ 414 (450)
T PTZ00013 391 LEPEYYMNPLLDVDDTLCMITMLP 414 (450)
T ss_pred ECHHHheehhccCCCCeeEEEEEE
Confidence 99999997532 22344457764
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=8.8e-41 Score=314.06 Aligned_cols=278 Identities=19% Similarity=0.224 Sum_probs=202.9
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCceeE
Q 019819 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 95 (335)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~ 95 (335)
.|+++|.||||+|++.|+|||||+++||+|. +|.. .++.|+|++|+ ++.. ..|.|+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~Ss-----------------T~~~--~~~~~~ 58 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSS-----------------TYRD--LGKGVT 58 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCc-----------------Cccc--CCceEE
Confidence 6999999999999999999999999999998 7743 35789999984 2322 467999
Q ss_pred EEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCC--------CchHHHHhhcC
Q 019819 96 IEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR--------ISIVSQLREYG 167 (335)
Q Consensus 96 ~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~--------~s~~~ql~~~g 167 (335)
+.|++| ++.|.+++|+|+|+. +......+.|+++....+.+ ......|||||||++. .+++++|.+|+
T Consensus 59 i~Yg~G-s~~G~~~~D~v~ig~--~~~~~~~~~~~~~~~~~~~~-~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~ 134 (364)
T cd05473 59 VPYTQG-SWEGELGTDLVSIPK--GPNVTFRANIAAITESENFF-LNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQT 134 (364)
T ss_pred EEECcc-eEEEEEEEEEEEECC--CCccceEEeeEEEeccccce-ecccccceeeeecccccccCCCCCCCHHHHHHhcc
Confidence 999999 689999999999952 11111123455655443322 1113579999999864 35788999998
Q ss_pred cccceeeeeecc-----------CCceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecC-----
Q 019819 168 LIRNVIGHCIGQ-----------NGRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK----- 229 (335)
Q Consensus 168 ~i~~~Fs~~l~~-----------~~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~----- 229 (335)
.++++||++|.. ...|.|+||+++ +..+++.|+|+... .+|.|.+++|.|+++.+...
T Consensus 135 ~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~----~~~~v~l~~i~vg~~~~~~~~~~~~ 210 (364)
T cd05473 135 GIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE----WYYEVIILKLEVGGQSLNLDCKEYN 210 (364)
T ss_pred CCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc----eeEEEEEEEEEECCEeccccccccc
Confidence 887899998731 237999999975 45788999999753 78999999999999987643
Q ss_pred CCcEEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCC--CCceE
Q 019819 230 DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNR--RNSVR 307 (335)
Q Consensus 230 ~~~~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~--~~~~~ 307 (335)
...+|+||||++++||+++|++|.+++.++.................|+.... .....+|+|+|+|+|. +..++
T Consensus 211 ~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~----~~~~~~P~i~~~f~g~~~~~~~~ 286 (364)
T cd05473 211 YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGT----TPWEIFPKISIYLRDENSSQSFR 286 (364)
T ss_pred CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccC----chHhhCCcEEEEEccCCCCceEE
Confidence 13699999999999999999999999988764211111000111246876421 1113589999999862 12357
Q ss_pred EEeCCCeEEEEEeC--CCEEEEEE
Q 019819 308 LVVPPEAYLVISVS--TSIIIIAY 329 (335)
Q Consensus 308 ~~l~~~~y~~~~~~--~~~~cl~~ 329 (335)
++|+|++|++.... .+..|+++
T Consensus 287 l~l~p~~Y~~~~~~~~~~~~C~~~ 310 (364)
T cd05473 287 ITILPQLYLRPVEDHGTQLDCYKF 310 (364)
T ss_pred EEECHHHhhhhhccCCCcceeeEE
Confidence 89999999986432 23567653
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.3e-40 Score=301.80 Aligned_cols=213 Identities=19% Similarity=0.320 Sum_probs=179.4
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCceeEE
Q 019819 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEI 96 (335)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~ 96 (335)
|+++|+||+|+|++.|+|||||+++||+|+ .|..|.++.++.|+|++|+ +..+. ..|.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss---------------t~~~~---~~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS---------------TAKLL---PGATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc---------------cceec---CCcEEEE
Confidence 899999999999999999999999999999 8999988788889999883 22221 3579999
Q ss_pred EeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCCC---------chHHHHhhcC
Q 019819 97 EYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI---------SIVSQLREYG 167 (335)
Q Consensus 97 ~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~---------s~~~ql~~~g 167 (335)
.|++|+.+.|.+++|+|+| |...++++.|||+....+.. +.....+||||||++.. +++++|.+++
T Consensus 62 ~Y~~G~~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSI----GGVEVPNQAIELATAVSASF-FSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EeCCCCeEEEEEEEEEEEE----CCEEECCeEEEEEeecCccc-cccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 9999977999999999999 46678999999998875422 12257899999998643 5677888876
Q ss_pred cccceeeeeeccCCceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCEE-eecCCCcEEEecCCcceee
Q 019819 168 LIRNVIGHCIGQNGRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGKS-CGLKDLTLIFDSGASYAYF 244 (335)
Q Consensus 168 ~i~~~Fs~~l~~~~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~-~~~~~~~~iiDtGt~~~~l 244 (335)
. +++||+||.+...|+|+|||++ +..++++|+|+..+ ..+|.|.+++|.++++. .......++|||||+++++
T Consensus 137 ~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~l 212 (278)
T cd06097 137 D-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILL 212 (278)
T ss_pred c-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcC
Confidence 5 8999999987678999999975 34789999999864 37899999999999873 3335678999999999999
Q ss_pred CHHHHHHHHHHHH
Q 019819 245 TSRVYQEIVSLIM 257 (335)
Q Consensus 245 p~~~~~~l~~~i~ 257 (335)
|++++++|.+++.
T Consensus 213 P~~~~~~l~~~l~ 225 (278)
T cd06097 213 PDAIVEAYYSQVP 225 (278)
T ss_pred CHHHHHHHHHhCc
Confidence 9999999998884
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3e-40 Score=302.00 Aligned_cols=239 Identities=22% Similarity=0.391 Sum_probs=198.5
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
..|+++|.||||+|++.|+|||||+++||+ .|
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~ 32 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DF 32 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------ee
Confidence 369999999999999999999999999996 36
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCCC-----------chHHHH
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI-----------SIVSQL 163 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql 163 (335)
.+.|++|+.+.|.+++|+|+|+ +..++++.|||+... ...+||||||+... ++++||
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~g----~~~~~~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L 100 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSIG----GATVKNLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIAL 100 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEEC----CeEecceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHH
Confidence 8889998799999999999994 556889999999984 35799999999765 799999
Q ss_pred hhcCcc-cceeeeeecc--CCceeEEeCCCC--CCCCCceeeeceeCCC--CCCceEEEeeEEEecCEEee----cCCCc
Q 019819 164 REYGLI-RNVIGHCIGQ--NGRGVLFLGDGK--VPSSGVAWTPMLQNSA--DLKHYILGPAELLYSGKSCG----LKDLT 232 (335)
Q Consensus 164 ~~~g~i-~~~Fs~~l~~--~~~g~l~fG~~~--~~~~~~~~~p~~~~~~--~~~~~~v~l~~i~v~~~~~~----~~~~~ 232 (335)
.++|+| +++||+||.+ ...|.|+||+++ +..++++|+|+..+.. ...+|.|.+++|.++++.+. .....
T Consensus 101 ~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~ 180 (295)
T cd05474 101 KKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLP 180 (295)
T ss_pred HHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCcc
Confidence 999999 8999999985 368999999975 3468899999987642 23789999999999998753 34578
Q ss_pred EEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCC
Q 019819 233 LIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPP 312 (335)
Q Consensus 233 ~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~ 312 (335)
++|||||++++||++++++|.+++.+..... .......|+.. .. |+|+|+|+| ++++||+
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~------~~~~~~~C~~~---------~~-p~i~f~f~g----~~~~i~~ 240 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATYDSD------EGLYVVDCDAK---------DD-GSLTFNFGG----ATISVPL 240 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEEcCC------CcEEEEeCCCC---------CC-CEEEEEECC----eEEEEEH
Confidence 9999999999999999999999997665421 12234567653 13 999999987 9999999
Q ss_pred CeEEEEEeC----CCEEEEEEecCC
Q 019819 313 EAYLVISVS----TSIIIIAYLTGK 333 (335)
Q Consensus 313 ~~y~~~~~~----~~~~cl~~~~g~ 333 (335)
++|+++... ++.|+++|++..
T Consensus 241 ~~~~~~~~~~~~~~~~C~~~i~~~~ 265 (295)
T cd05474 241 SDLVLPASTDDGGDGACYLGIQPST 265 (295)
T ss_pred HHhEeccccCCCCCCCeEEEEEeCC
Confidence 999997642 456778998753
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.1e-39 Score=293.74 Aligned_cols=214 Identities=38% Similarity=0.689 Sum_probs=183.4
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCceeE
Q 019819 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 95 (335)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~ 95 (335)
+|+++|+||||+|++.|+|||||+++||+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~----------------------------------------------~~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC----------------------------------------------CSYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC----------------------------------------------CceE
Confidence 599999999999999999999999999963 1578
Q ss_pred EEeCCCCeEEEEEEEEEEEeeecCCcc--cccceEEeceeecCCCCCCCCCCCceEEeeCCCCCchHHHHhhcCccccee
Q 019819 96 IEYGDGGSSIGALVTDLFPLRFSNGSV--FNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVI 173 (335)
Q Consensus 96 ~~Y~~g~~~~G~~~~D~v~~~~~~g~~--~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~F 173 (335)
+.|++|+.+.|.+++|+|+|+ .. .++++.|||+....+ + .....+||||||+...|+++||..++ ++|
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g----~~~~~~~~~~Fg~~~~~~~-~--~~~~~~GIlGLg~~~~s~~~ql~~~~---~~F 104 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFG----DSSVSVPNVAFGCGTDNEG-G--SFGGADGILGLGRGPLSLVSQLGSTG---NKF 104 (265)
T ss_pred eEeCCCceeeeeEEEEEEEec----CCCCccCCEEEEecccccC-C--ccCCCCEEEECCCCcccHHHHhhccc---Cee
Confidence 999988899999999999995 44 688999999998865 2 22678999999999999999999887 899
Q ss_pred eeeecc----CCceeEEeCCCCC-CCCCceeeeceeCCCCCCceEEEeeEEEecCEEeec----------CCCcEEEecC
Q 019819 174 GHCIGQ----NGRGVLFLGDGKV-PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL----------KDLTLIFDSG 238 (335)
Q Consensus 174 s~~l~~----~~~g~l~fG~~~~-~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~----------~~~~~iiDtG 238 (335)
|+||.+ ...|+|+||+++. ..+++.|+|+..++....+|.|++++|.++++.+.+ ....+|+|||
T Consensus 105 s~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTG 184 (265)
T cd05476 105 SYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSG 184 (265)
T ss_pred EEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCC
Confidence 999974 4589999999753 468999999988643358899999999999998752 3478999999
Q ss_pred CcceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEE
Q 019819 239 ASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVI 318 (335)
Q Consensus 239 t~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~ 318 (335)
|++++||+++| |+|+|+|++ ++++.|++++|++.
T Consensus 185 Ts~~~lp~~~~-------------------------------------------P~i~~~f~~---~~~~~i~~~~y~~~ 218 (265)
T cd05476 185 TTLTYLPDPAY-------------------------------------------PDLTLHFDG---GADLELPPENYFVD 218 (265)
T ss_pred CcceEcCcccc-------------------------------------------CCEEEEECC---CCEEEeCcccEEEE
Confidence 99999998766 679999995 49999999999996
Q ss_pred EeCCCEEEEEEecC
Q 019819 319 SVSTSIIIIAYLTG 332 (335)
Q Consensus 319 ~~~~~~~cl~~~~g 332 (335)
.. .+..|+++++.
T Consensus 219 ~~-~~~~C~~~~~~ 231 (265)
T cd05476 219 VG-EGVVCLAILSS 231 (265)
T ss_pred CC-CCCEEEEEecC
Confidence 43 45788999875
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.9e-38 Score=287.81 Aligned_cols=239 Identities=28% Similarity=0.470 Sum_probs=194.7
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCC--CCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQ--YKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~--f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
|+++|.||+|+|++.|++||||+++||+|. .|..|.++.... |++..| ..|.. ..|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s-----------------~~~~~--~~~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKS-----------------STYKD--TGCTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCC-----------------ceeec--CCCEE
Confidence 789999999999999999999999999999 899887655544 555444 22222 57899
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCCC------CchHHHHhhcCc
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREYGL 168 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~g~ 168 (335)
.+.|++| .+.|.+++|+|+|+ +..++++.|||+......+ .....+||||||+.. .++++||.++++
T Consensus 61 ~~~Y~~g-~~~g~~~~D~v~~~----~~~~~~~~fg~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 61 SITYGDG-SVTGGLGTDTVTIG----GLTIPNQTFGCATSESGDF--SSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred EEEECCC-eEEEEEEEeEEEEC----CEEEeceEEEEEeccCCcc--cccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 9999998 89999999999994 5558899999999986532 226799999999987 899999999999
Q ss_pred c-cceeeeeecc----CCceeEEeCCCCC--CCCCceeeeceeCCCCCCceEEEeeEEEecCE--EeecCCCcEEEecCC
Q 019819 169 I-RNVIGHCIGQ----NGRGVLFLGDGKV--PSSGVAWTPMLQNSADLKHYILGPAELLYSGK--SCGLKDLTLIFDSGA 239 (335)
Q Consensus 169 i-~~~Fs~~l~~----~~~g~l~fG~~~~--~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~--~~~~~~~~~iiDtGt 239 (335)
| +++||+||.+ ...|.|+||+.+. ..+++.|+|+.... ..+|.|.+++|.+++. ........++|||||
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt 211 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNG--PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGT 211 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCC--CCEEEEEeCeEEECCceeeecCCCcEEEEecCC
Confidence 8 9999999986 3789999999864 47899999998862 4899999999999997 444456899999999
Q ss_pred cceeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEE
Q 019819 240 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSF 299 (335)
Q Consensus 240 ~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 299 (335)
++++||++++++|++++.+.... ...|+...+.. ...+|+|+|+|
T Consensus 212 ~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~----~~~~p~i~f~f 256 (283)
T cd05471 212 SLIYLPSSVYDAILKALGAAVSS-----------SDGGYGVDCSP----CDTLPDITFTF 256 (283)
T ss_pred CCEeCCHHHHHHHHHHhCCcccc-----------cCCcEEEeCcc----cCcCCCEEEEE
Confidence 99999999999999999877652 11122221111 14589999999
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=5.7e-39 Score=296.14 Aligned_cols=265 Identities=25% Similarity=0.450 Sum_probs=211.7
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCC-CCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC-TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C-~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
+|+++|+||+|+|+++|++||||+++||++. .|..| .+..+..|++.+|+ ++.. ..+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~-----------------t~~~--~~~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS-----------------TFSN--QGKPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST-----------------TEEE--EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc-----------------cccc--ceeee
Confidence 5999999999999999999999999999998 89876 44567899998773 2222 35679
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCCC-------CCchHHHHhhcC
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRG-------RISIVSQLREYG 167 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~-------~~s~~~ql~~~g 167 (335)
.+.|++|+ +.|.+++|+|+| |+..+.++.||++....... +.....+||||||+. ..+++.+|.++|
T Consensus 61 ~~~y~~g~-~~G~~~~D~v~i----g~~~~~~~~f~~~~~~~~~~-~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDGS-VSGNLVSDTVSI----GGLTIPNQTFGLADSYSGDP-FSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTEE-EEEEEEEEEEEE----TTEEEEEEEEEEEEEEESHH-HHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCcc-cccccccceEee----eeccccccceeccccccccc-cccccccccccccCCcccccccCCcceecchhhc
Confidence 99999995 999999999999 56778899999999853320 011578999999963 468999999999
Q ss_pred cc-cceeeeeeccC--CceeEEeCCCC--CCCCCceeeeceeCCCCCCceEEEeeEEEecCE-EeecCCCcEEEecCCcc
Q 019819 168 LI-RNVIGHCIGQN--GRGVLFLGDGK--VPSSGVAWTPMLQNSADLKHYILGPAELLYSGK-SCGLKDLTLIFDSGASY 241 (335)
Q Consensus 168 ~i-~~~Fs~~l~~~--~~g~l~fG~~~--~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~-~~~~~~~~~iiDtGt~~ 241 (335)
+| +++||++|.+. ..|.|+||+++ +..++++|+|+.. ..+|.+.+++|.+++. ........++||||+++
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~ 210 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSGQQAILDTGTSY 210 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSS
T ss_pred cccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccceeeeccccccc
Confidence 99 89999999854 37999999975 3468899999983 4889999999999998 44444568999999999
Q ss_pred eeeCHHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccCCcccccccccccccEEEEEcCCCCceEEEeCCCeEEEEEeC
Q 019819 242 AYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISVS 321 (335)
Q Consensus 242 ~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~~~~ 321 (335)
+.||.+++++|++++...... .....+|... ..+|.|+|+|++ .+++|+|++|+++...
T Consensus 211 i~lp~~~~~~i~~~l~~~~~~--------~~~~~~c~~~---------~~~p~l~f~~~~----~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 211 IYLPRSIFDAIIKALGGSYSD--------GVYSVPCNST---------DSLPDLTFTFGG----VTFTIPPSDYIFKIED 269 (317)
T ss_dssp EEEEHHHHHHHHHHHTTEEEC--------SEEEEETTGG---------GGSEEEEEEETT----EEEEEEHHHHEEEESS
T ss_pred ccccchhhHHHHhhhcccccc--------eeEEEecccc---------cccceEEEeeCC----EEEEecchHhcccccc
Confidence 999999999999999776542 1112345431 357999999988 9999999999998765
Q ss_pred CC--EEEEEEec
Q 019819 322 TS--IIIIAYLT 331 (335)
Q Consensus 322 ~~--~~cl~~~~ 331 (335)
.+ .|.++|+.
T Consensus 270 ~~~~~C~~~i~~ 281 (317)
T PF00026_consen 270 GNGGYCYLGIQP 281 (317)
T ss_dssp TTSSEEEESEEE
T ss_pred cccceeEeeeec
Confidence 33 56677776
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=7.8e-30 Score=212.71 Aligned_cols=156 Identities=40% Similarity=0.738 Sum_probs=124.6
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCC----cccCCcccccCCCCCCCCCCCCCCCCc
Q 019819 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPNDQC 92 (335)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S----~~~c~~~~C~~~~~~~~~~~~~~~~~~ 92 (335)
|+++|.||||+|++.|++||||+++|++| ..+.|+|.+| .++|.++.|...+.. ...|...++.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 89999999999999999999999999986 2578999998 499999999977642 12333334789
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEeeecCC-cccccceEEeceeecCCCCCCCCCCCceEEeeCCCCCchHHHHhhcCcccc
Q 019819 93 DYEIEYGDGGSSIGALVTDLFPLRFSNG-SVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRN 171 (335)
Q Consensus 93 ~~~~~Y~~g~~~~G~~~~D~v~~~~~~g-~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~ 171 (335)
.|.+.|++++.+.|.+++|+|+++..++ ...++++.|||+....+.+ ...+||||||+++.||+.||+++ ..+
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~--~~~ 143 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLASS--SGN 143 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHHHH----S
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHHHh--cCC
Confidence 9999999999999999999999986643 2457899999999987554 47999999999999999999988 678
Q ss_pred eeeeeecc---CCceeEEeCC
Q 019819 172 VIGHCIGQ---NGRGVLFLGD 189 (335)
Q Consensus 172 ~Fs~~l~~---~~~g~l~fG~ 189 (335)
+||+||.+ ...|+|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999985 5789999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.4e-22 Score=157.72 Aligned_cols=108 Identities=31% Similarity=0.608 Sum_probs=89.6
Q ss_pred EEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCC-CCCCCcccCCcccccCCCCCCCCCCCCCCCCceeEEE
Q 019819 19 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQY-KPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEIE 97 (335)
Q Consensus 19 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f-~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 97 (335)
++|.||+|+|++.|+|||||+++||+|. +|..|.++.++.| +|+.|+ .+.. ..|.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss-----------------t~~~--~~~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS-----------------TYSD--NGCTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC-----------------CCCC--CCcEEEEE
Confidence 4799999999999999999999999999 8998877666667 887773 1222 47899999
Q ss_pred eCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEee
Q 019819 98 YGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGL 152 (335)
Q Consensus 98 Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGL 152 (335)
|++| .+.|.++.|+|+| |...++++.|||+....+.+. .....+|||||
T Consensus 61 Y~~g-~~~g~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~-~~~~~~GilGL 109 (109)
T cd05470 61 YGTG-SLSGGLSTDTVSI----GDIEVVGQAFGCATDEPGATF-LPALFDGILGL 109 (109)
T ss_pred eCCC-eEEEEEEEEEEEE----CCEEECCEEEEEEEecCCccc-cccccccccCC
Confidence 9999 6889999999999 456688999999999866532 22578999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.72 E-value=2.5e-17 Score=137.16 Aligned_cols=118 Identities=21% Similarity=0.399 Sum_probs=87.4
Q ss_pred ceEEEeeEEEecCEEeecCC---------CcEEEecCCcceeeCHHHHHHHHHHHHHHhcCCCCcc-CCCCCCCCccccC
Q 019819 211 HYILGPAELLYSGKSCGLKD---------LTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKL-APDDKTLPICWRG 280 (335)
Q Consensus 211 ~~~v~l~~i~v~~~~~~~~~---------~~~iiDtGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~C~~~ 280 (335)
+|.|.|++|+|+++.+.++. ..++|||||++++||+++|++|.+++.+.+...++.+ ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999987643 5799999999999999999999999999998654333 2245677899997
Q ss_pred CcccccccccccccEEEEEcCCCCceEEEeCCCeEEEEEeCCCEEEEEEecC
Q 019819 281 PFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISVSTSIIIIAYLTG 332 (335)
Q Consensus 281 ~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~~~~y~~~~~~~~~~cl~~~~g 332 (335)
+..+.+.....+|+|+|+|.| +++++|++++|++..+ ++..|++|.++
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~---ga~l~l~~~~y~~~~~-~~~~Cla~~~~ 128 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEG---GADLTLPPENYFVQVS-PGVFCLAFVPS 128 (161)
T ss_dssp GCS-EETTEESS--EEEEETT---SEEEEE-HHHHEEEEC-TTEEEESEEEE
T ss_pred cccccccccccCCeEEEEEeC---Ccceeeeccceeeecc-CCCEEEEEEcc
Confidence 542222334579999999998 5999999999999876 46999999987
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.97 E-value=3.1e-05 Score=57.86 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=64.2
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
+.|++++.|+. +++.+++|||++.+|+... ....+. . .. . .....
T Consensus 1 ~~~~v~v~i~~--~~~~~llDTGa~~s~i~~~-~~~~l~---~-~~----------------------~------~~~~~ 45 (96)
T cd05483 1 GHFVVPVTING--QPVRFLLDTGASTTVISEE-LAERLG---L-PL----------------------T------LGGKV 45 (96)
T ss_pred CcEEEEEEECC--EEEEEEEECCCCcEEcCHH-HHHHcC---C-Cc----------------------c------CCCcE
Confidence 36899999995 9999999999999999754 111111 0 00 0 12356
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeC
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLG 153 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg 153 (335)
.+...+|.........+.+++ |+...+++.+........ ..+||||+.
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~~~-------~~~gIlG~d 93 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGDAL-------GVDGLLGMD 93 (96)
T ss_pred EEEecCCCccceEEEcceEEE----CCcEEeccEEEEeCCccc-------CCceEeChH
Confidence 677777766666666888999 566677777776655421 479999985
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.04 E-value=0.0049 Score=48.47 Aligned_cols=94 Identities=12% Similarity=0.107 Sum_probs=61.5
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
+.|++++.|.. +++.+++|||++.+-+... .-... ..++.. .....
T Consensus 10 g~~~v~~~InG--~~~~flVDTGAs~t~is~~-~A~~L------gl~~~~-------------------------~~~~~ 55 (121)
T TIGR02281 10 GHFYATGRVNG--RNVRFLVDTGATSVALNEE-DAQRL------GLDLNR-------------------------LGYTV 55 (121)
T ss_pred CeEEEEEEECC--EEEEEEEECCCCcEEcCHH-HHHHc------CCCccc-------------------------CCceE
Confidence 89999999987 7999999999999988643 11110 011100 12244
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeCC
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGR 154 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 154 (335)
.+.-+.|........-|.+++ |.....|+.+.+.... ...+|+||+.+
T Consensus 56 ~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~--------~~~~~LLGm~f 103 (121)
T TIGR02281 56 TVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGG--------ALSESLLGMSF 103 (121)
T ss_pred EEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCC--------cCCceEcCHHH
Confidence 555566744455568888999 5777888887766432 12479999863
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.41 E-value=0.031 Score=40.78 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=53.5
Q ss_pred EEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCceeEEEe
Q 019819 19 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEIEY 98 (335)
Q Consensus 19 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~Y 98 (335)
+++.|+. +++.+++|||++.+.+.-. -..... ..+ . . ......+.-
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~-~~~~l~------~~~---------------------~--~--~~~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRS-LAKKLG------LKP---------------------R--P--KSVPISVSG 46 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHH-HHHHcC------CCC---------------------c--C--CceeEEEEe
Confidence 4677887 8999999999998887643 111100 000 0 0 111344454
Q ss_pred CCCCeEEEEEEEEEEEeeecCCcccccceEEeceeecCCCCCCCCCCCceEEeeC
Q 019819 99 GDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLG 153 (335)
Q Consensus 99 ~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg 153 (335)
.+|........-+.+++ |.....++.|-..... ...+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~i----g~~~~~~~~~~v~~~~--------~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITI----GGITLKNVPFLVVDLG--------DPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEE----CCEEEEeEEEEEECCC--------CCCEEEeCCc
Confidence 55544555566678888 4555667776655511 4679999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.46 E-value=0.14 Score=40.27 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=27.0
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
..+++++.|+. +++.+++|||++.+++.-.
T Consensus 15 ~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEING--VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEECC--EEEEEEEeCCCceEEeCHH
Confidence 67899999998 8999999999999999754
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.65 E-value=0.15 Score=37.59 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
|++++.|+. +++.+++||||+..++..+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 578999998 9999999999999999754
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.47 E-value=0.82 Score=32.13 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=27.3
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
+.+++++.||. +.+.+++|||++...|..+
T Consensus 7 g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 7 GLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred CEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 67899999999 9999999999999988765
No 33
>PF13650 Asp_protease_2: Aspartyl protease
Probab=86.45 E-value=1.3 Score=31.99 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=24.2
Q ss_pred EEEecCEEeecCCCcEEEecCCcceeeCHHHHHHH
Q 019819 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (335)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 252 (335)
.+.++|+.+ .+++|||++.+.++++.++.+
T Consensus 2 ~v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 356777644 599999999999999988765
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.13 E-value=1.9 Score=30.28 Aligned_cols=30 Identities=13% Similarity=0.342 Sum_probs=24.4
Q ss_pred EEEecCEEeecCCCcEEEecCCcceeeCHHHHHHH
Q 019819 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (335)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 252 (335)
.+.+++..+. +++|||++..+++.+..+.+
T Consensus 12 ~~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 4567776553 99999999999999988865
No 35
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.60 E-value=1.5 Score=32.60 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.5
Q ss_pred EEEEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 18 AVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 18 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
+++|.|.. +++.+++||||+.+-++.+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 57888888 8999999999999988754
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=84.24 E-value=1.9 Score=31.60 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=25.1
Q ss_pred EEEecCEEeecCCCcEEEecCCcceeeCHHHHHHH
Q 019819 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (335)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 252 (335)
.+.|+|+.+. +++|||++.+.++.+.+..+
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 4677887664 89999999999999988865
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=82.00 E-value=7.2 Score=33.32 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=52.9
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCcee
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~C~~~~~~~~~~~~~~~~~~~~ 94 (335)
++|.++..|-. |++..++|||.+..-++-+ ... .--++.+. ...++
T Consensus 104 GHF~a~~~VNG--k~v~fLVDTGATsVal~~~-dA~------RlGid~~~-------------------------l~y~~ 149 (215)
T COG3577 104 GHFEANGRVNG--KKVDFLVDTGATSVALNEE-DAR------RLGIDLNS-------------------------LDYTI 149 (215)
T ss_pred CcEEEEEEECC--EEEEEEEecCcceeecCHH-HHH------HhCCCccc-------------------------cCCce
Confidence 89999999988 9999999999998887644 221 12344322 23366
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeecCCcccccceE
Q 019819 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLT 128 (335)
Q Consensus 95 ~~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~ 128 (335)
.+.-++|....-.+--|.|.| |.+...++.
T Consensus 150 ~v~TANG~~~AA~V~Ld~v~I----G~I~~~nV~ 179 (215)
T COG3577 150 TVSTANGRARAAPVTLDRVQI----GGIRVKNVD 179 (215)
T ss_pred EEEccCCccccceEEeeeEEE----ccEEEcCch
Confidence 777788855566688899999 455455543
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=81.87 E-value=2.9 Score=32.70 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCceEEEeeEEEecCEEeecCCCcEEEecCCcceeeCHHHHHHH
Q 019819 209 LKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (335)
Q Consensus 209 ~~~~~v~l~~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 252 (335)
.++|.+ .+.++|+.+ .+++|||++.+.++++..+.+
T Consensus 9 ~g~~~v---~~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYA---TGRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEE---EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 356643 456788744 599999999999999988765
No 39
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=81.09 E-value=15 Score=34.26 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=33.5
Q ss_pred EEeCCCCeEEEEEEEEEEEeeecCCcccccceEEe----------ceeecCCCCCCCCCCCceEEeeCCC
Q 019819 96 IEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFG----------CGYNQHNPGPLSPPDTAGVLGLGRG 155 (335)
Q Consensus 96 ~~Y~~g~~~~G~~~~D~v~~~~~~g~~~~~~~~fg----------~~~~~~~~~~~~~~~~~GIlGLg~~ 155 (335)
..|++| +.-|.+.+-+|+|+.+.. ..++-|.++ |...............+||||+|.-
T Consensus 82 ~~F~sg-ytWGsVr~AdV~igge~A-~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASG-YTWGSVRTADVTIGGETA-SSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCc-ccccceEEEEEEEcCeec-cccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 357777 888999999999973211 123334443 2211111111223578999999873
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=79.86 E-value=4.1 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=23.5
Q ss_pred EEEecCEEeecCCCcEEEecCCcceeeCHHHHHHH
Q 019819 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (335)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 252 (335)
.+.++++.+ .+++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 456676554 599999999999999877654
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.96 E-value=4.2 Score=29.49 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.1
Q ss_pred EEecCEEeecCCCcEEEecCCcceeeCHHHHHHH
Q 019819 219 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (335)
Q Consensus 219 i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 252 (335)
+.+||+.+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567777654 89999999999999988765
No 42
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=71.14 E-value=7.3 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.1
Q ss_pred EEEecCEEeecCCCcEEEecCCcceeeCHHHHHHH
Q 019819 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (335)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 252 (335)
.+.++|+.+ .+++|||++.+.++++..+.+
T Consensus 20 ~~~Ing~~~-----~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 20 NVEINGVPV-----KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEEECCEEE-----EEEEeCCCceEEeCHHHHHHc
Confidence 345566654 489999999999999987753
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=70.48 E-value=5.9 Score=28.72 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 20 NLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 20 ~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
.+.|.. +++.+++|||++.+-+...
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHH
Confidence 456666 8999999999999999754
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=70.31 E-value=5.1 Score=29.69 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEecCEEeecCCCcEEEecCCcceeeCHHHH
Q 019819 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVY 249 (335)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~ 249 (335)
.|.++++.+ .+++|||+..+.++.+.+
T Consensus 9 ~v~i~g~~i-----~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-----KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-----EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-----EEEEecCCCcceeccccc
Confidence 466677754 499999999999997643
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=66.15 E-value=9.1 Score=28.03 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=20.9
Q ss_pred EEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 20 NLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 20 ~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
++.|+. |.+.+++|||+.++-+...
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccc
Confidence 466775 9999999999999988743
No 46
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=61.97 E-value=10 Score=28.04 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=23.4
Q ss_pred EEecCEEeecCCCcEEEecCCcceeeCHHHHHHHH
Q 019819 219 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIV 253 (335)
Q Consensus 219 i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l~ 253 (335)
+.++++ .+..+.+|||++...+|.+.++.+.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 455553 2345899999999999999888654
No 47
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=60.44 E-value=13 Score=30.67 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=21.5
Q ss_pred EEEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 19 VNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 19 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
..+.++.-..++.++|||||+..++...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3444555558999999999999998754
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=58.38 E-value=18 Score=28.40 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=23.0
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
...|++++|.. +++++.+|||...+-+..+
T Consensus 23 ~mLyI~~~ing--~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 23 SMLYINCKING--VPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ---EEEEEETT--EEEEEEEETT-SS-EEEHH
T ss_pred ceEEEEEEECC--EEEEEEEeCCCCccccCHH
Confidence 67899999999 9999999999999988754
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=55.28 E-value=10 Score=28.84 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.9
Q ss_pred CcEEEecCCccee-eCHHHHHH
Q 019819 231 LTLIFDSGASYAY-FTSRVYQE 251 (335)
Q Consensus 231 ~~~iiDtGt~~~~-lp~~~~~~ 251 (335)
..+++|||.+... +|.++++.
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~ 38 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNK 38 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHH
Confidence 5699999999886 99988775
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=11 Score=29.50 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=17.7
Q ss_pred EEEecCCc-ceeeCHHHHHHH
Q 019819 233 LIFDSGAS-YAYFTSRVYQEI 252 (335)
Q Consensus 233 ~iiDtGt~-~~~lp~~~~~~l 252 (335)
.++|||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999998864
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=49.73 E-value=27 Score=27.47 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.5
Q ss_pred EEEecCEEeecCCCcEEEecCCcceeeCHHHHHH
Q 019819 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQE 251 (335)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~ 251 (335)
.++++|+.+ .|++|||+..+.++.+..+.
T Consensus 28 ~~~ing~~v-----kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV-----KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE-----EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE-----EEEEeCCCCccccCHHHHHH
Confidence 566788765 49999999999999998886
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=48.90 E-value=54 Score=28.13 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=30.8
Q ss_pred eeeceeCCCCCCceEEEeeEEEecCEEeecCCCcEEEecCCcceeeCHHHHHH
Q 019819 199 WTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQE 251 (335)
Q Consensus 199 ~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~ 251 (335)
.+.+.+.. .+||.+ ...|||+.+. .++|||.+.+.++++..+.
T Consensus 95 ~v~Lak~~--~GHF~a---~~~VNGk~v~-----fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 95 EVSLAKSR--DGHFEA---NGRVNGKKVD-----FLVDTGATSVALNEEDARR 137 (215)
T ss_pred EEEEEecC--CCcEEE---EEEECCEEEE-----EEEecCcceeecCHHHHHH
Confidence 34444443 477754 4578888775 8999999999999887654
No 53
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=40.77 E-value=40 Score=30.87 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=27.1
Q ss_pred ceeEEeee--ceEEEE---EEeCCC-----CcEEEEEEeCCCCceeEeCC
Q 019819 7 EFFFFPIF--SYFAVN---LTVGKP-----PKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 7 ~~~~~Pl~--~~y~~~---i~iGtP-----~q~~~v~~DTGS~~~Wv~~~ 46 (335)
.....|+. ..|.++ |.||.. .+...+++|||++++++|-.
T Consensus 178 ~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 178 EHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred ceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 34456665 456555 577752 23457999999999999843
No 54
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=39.89 E-value=41 Score=25.51 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=19.8
Q ss_pred EEEEeCCCC----cEEEEEEeCCCCcee-Ee
Q 019819 19 VNLTVGKPP----KLFDFDFDTGSDLTW-VQ 44 (335)
Q Consensus 19 ~~i~iGtP~----q~~~v~~DTGS~~~W-v~ 44 (335)
+++.|..|. -++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 678888883 368899999998654 44
No 55
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=39.36 E-value=45 Score=26.50 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=24.8
Q ss_pred ceEEEEEEeCCCCcEEEEEEeCCCCceeEeCC
Q 019819 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 46 (335)
..-.+.+.|.+ ++..++||+|++..+|..+
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 34567788888 9999999999999998644
No 56
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=37.21 E-value=1e+02 Score=25.47 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=19.6
Q ss_pred CCcEEEecCCcceeeCHHHHHHHH
Q 019819 230 DLTLIFDSGASYAYFTSRVYQEIV 253 (335)
Q Consensus 230 ~~~~iiDtGt~~~~lp~~~~~~l~ 253 (335)
...++||||++..+.-.+..+.|-
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 357999999999998888777653
No 57
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=31.32 E-value=54 Score=30.15 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=27.6
Q ss_pred ceeEEeee--ceEEEE---EEeCCC------CcEEEEEEeCCCCceeEeCC
Q 019819 7 EFFFFPIF--SYFAVN---LTVGKP------PKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 7 ~~~~~Pl~--~~y~~~---i~iGtP------~q~~~v~~DTGS~~~Wv~~~ 46 (335)
+....|+. ..|.++ |.||.. .....+++|||+++++++..
T Consensus 198 ~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 198 KIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred CceEEeccCCceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 34456666 566555 577753 24456899999999999854
No 58
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=30.46 E-value=77 Score=29.17 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=27.3
Q ss_pred ceeEEeee--ceEEEE---EEeCCC---CcEEEEEEeCCCCceeEeCC
Q 019819 7 EFFFFPIF--SYFAVN---LTVGKP---PKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 7 ~~~~~Pl~--~~y~~~---i~iGtP---~q~~~v~~DTGS~~~Wv~~~ 46 (335)
....+|+. ..|.++ +.||.- .++..++||||++.+++|-.
T Consensus 180 ~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~ 227 (329)
T cd05485 180 NFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVD 227 (329)
T ss_pred ceEEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHH
Confidence 44566766 556555 467752 23457999999999999754
No 59
>PTZ00165 aspartyl protease; Provisional
Probab=28.60 E-value=81 Score=31.00 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=28.7
Q ss_pred cceeEEeee--ceEEEE---EEeCC-----CCcEEEEEEeCCCCceeEeCC
Q 019819 6 IEFFFFPIF--SYFAVN---LTVGK-----PPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 6 ~~~~~~Pl~--~~y~~~---i~iGt-----P~q~~~v~~DTGS~~~Wv~~~ 46 (335)
++...+|+. ..|.++ |.||. +.....+++|||++++.+|..
T Consensus 294 g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~ 344 (482)
T PTZ00165 294 HKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSS 344 (482)
T ss_pred CceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHH
Confidence 345567777 555544 67874 135678999999999998854
No 60
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=25.44 E-value=74 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=25.8
Q ss_pred eeEEeee--ceEEEE---EEeCCCC----cEEEEEEeCCCCceeEeCC
Q 019819 8 FFFFPIF--SYFAVN---LTVGKPP----KLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 8 ~~~~Pl~--~~y~~~---i~iGtP~----q~~~v~~DTGS~~~Wv~~~ 46 (335)
....|+. ..|.++ |.||.-. ....++||||++++++|-.
T Consensus 168 l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~ 215 (316)
T cd05486 168 LNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSG 215 (316)
T ss_pred eEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHH
Confidence 4455665 455554 6777521 2346999999999999743
No 61
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=25.22 E-value=89 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=22.9
Q ss_pred eEEEE---EEeCC-----CCcEEEEEEeCCCCceeEeCC
Q 019819 16 YFAVN---LTVGK-----PPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 16 ~y~~~---i~iGt-----P~q~~~v~~DTGS~~~Wv~~~ 46 (335)
.|.+. |.+|. ......++||||++.++++..
T Consensus 181 ~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 181 YWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred EEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 45444 46665 246779999999999999865
No 62
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=24.02 E-value=1e+02 Score=27.45 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=27.3
Q ss_pred ceeEEeee---ceEEEE---EEeCCC----CcEEEEEEeCCCCceeEeCC
Q 019819 7 EFFFFPIF---SYFAVN---LTVGKP----PKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 7 ~~~~~Pl~---~~y~~~---i~iGtP----~q~~~v~~DTGS~~~Wv~~~ 46 (335)
+...+|+. ..|.++ |.||.- .....++||||++.+++|..
T Consensus 166 ~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 166 EISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred ceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 45566765 345544 466642 35567999999999999854
No 63
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=24.01 E-value=88 Score=27.85 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=26.1
Q ss_pred eeEEeee-----ceEEEE---EEeCC---CCcEEEEEEeCCCCceeEeCC
Q 019819 8 FFFFPIF-----SYFAVN---LTVGK---PPKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 8 ~~~~Pl~-----~~y~~~---i~iGt---P~q~~~v~~DTGS~~~Wv~~~ 46 (335)
....|+. ..|.++ |+||. +.....+++|||++++.++.+
T Consensus 145 i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 145 VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 3445555 255555 57874 223457999999999999855
No 64
>PTZ00147 plasmepsin-1; Provisional
Probab=23.34 E-value=90 Score=30.44 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=26.1
Q ss_pred ceeEEeee--ceEEEEEE--eCCC-CcEEEEEEeCCCCceeEeCC
Q 019819 7 EFFFFPIF--SYFAVNLT--VGKP-PKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 7 ~~~~~Pl~--~~y~~~i~--iGtP-~q~~~v~~DTGS~~~Wv~~~ 46 (335)
.....|+. ..|.+++. +|.- .....+++|||++++++|..
T Consensus 305 ~l~y~pl~~~~~W~V~l~~~vg~~~~~~~~aIiDSGTsli~lP~~ 349 (453)
T PTZ00147 305 PLTYEKLNHDLYWQVDLDVHFGNVSSEKANVIVDSGTSVITVPTE 349 (453)
T ss_pred ceEEEEcCCCceEEEEEEEEECCEecCceeEEECCCCchhcCCHH
Confidence 34456666 45655554 3431 23467999999999999854
No 65
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=22.68 E-value=4.9e+02 Score=22.30 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=40.1
Q ss_pred CceEEEeeEEEecCEEeecCCCcEEEec-CCcceeeCHHHHHHHHHHHHHHhc
Q 019819 210 KHYILGPAELLYSGKSCGLKDLTLIFDS-GASYAYFTSRVYQEIVSLIMRDLI 261 (335)
Q Consensus 210 ~~~~v~l~~i~v~~~~~~~~~~~~iiDt-Gt~~~~lp~~~~~~l~~~i~~~~~ 261 (335)
.+-.+.+++|.+++..++.. ..+.|. |---+|+|.+......+++.+.+.
T Consensus 101 ~Rl~i~I~SI~~~~~IipV~--L~vYD~DG~eGlyVP~s~~~~a~ke~~~~~~ 151 (200)
T PF12508_consen 101 QRLLITITSIEYGGNIIPVE--LSVYDLDGQEGLYVPNSAEREAAKEMAANAG 151 (200)
T ss_pred cEEEEEEEEEEECCEEEEEE--EEEECCCCCcccccCCchHHHHHHHHHHHHh
Confidence 66889999999999987643 345553 678889999999999988888775
No 66
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=22.28 E-value=1e+02 Score=27.27 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.1
Q ss_pred EEEEEEeCCCCceeEeCC
Q 019819 29 LFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 29 ~~~v~~DTGS~~~Wv~~~ 46 (335)
...+++|||++++.++..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 356899999999999855
No 67
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=21.42 E-value=1.1e+02 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=25.6
Q ss_pred eeEEeee--ceEEEE---EEeCCC----CcEEEEEEeCCCCceeEeCC
Q 019819 8 FFFFPIF--SYFAVN---LTVGKP----PKLFDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 8 ~~~~Pl~--~~y~~~---i~iGtP----~q~~~v~~DTGS~~~Wv~~~ 46 (335)
....|+. ..|.++ |.||.. .....++||||++++.+|..
T Consensus 176 l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~~p~~ 223 (325)
T cd05490 176 LHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLITGPVE 223 (325)
T ss_pred eEEEEcCcceEEEEEeeEEEECCeeeecCCCCEEEECCCCccccCCHH
Confidence 3445655 455544 577752 22357999999999998754
No 68
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=20.85 E-value=1.7e+02 Score=22.89 Aligned_cols=49 Identities=8% Similarity=0.050 Sum_probs=32.9
Q ss_pred EEeCCCCCCCCCceeeeceeCCCCCCceEEEeeEEEecCEEeecCCCcEEEecC
Q 019819 185 LFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSG 238 (335)
Q Consensus 185 l~fG~~~~~~~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~iiDtG 238 (335)
+.+.|-+++...+.--++ . .+.|.++.+=+...|..+.......+||+=
T Consensus 74 ~s~~G~efYGk~ltlp~l-~----dG~ytvk~eiL~s~g~vV~t~s~~~~IDtt 122 (124)
T PF13752_consen 74 ISSNGKEFYGKELTLPAL-G----DGTYTVKSEILDSQGTVVQTYSYPFTIDTT 122 (124)
T ss_pred EEeCCceeeeeEEEeccC-C----CCcEEEEEEeeccCCCEEEeeeEeEEEecc
Confidence 444444344344443333 2 378999999888899888877788999973
No 69
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=20.10 E-value=1.2e+02 Score=28.36 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=24.9
Q ss_pred eeEEeee--ceEEEE---EEeCCC-----CcE---EEEEEeCCCCceeEeCC
Q 019819 8 FFFFPIF--SYFAVN---LTVGKP-----PKL---FDFDFDTGSDLTWVQCD 46 (335)
Q Consensus 8 ~~~~Pl~--~~y~~~---i~iGtP-----~q~---~~v~~DTGS~~~Wv~~~ 46 (335)
....|+. ..|.++ |.||.- ... ..+++|||+++++++..
T Consensus 177 l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~ 228 (364)
T cd05473 177 IWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVK 228 (364)
T ss_pred ceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHH
Confidence 4456766 445444 567642 111 25899999999999854
Done!