BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019821
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 7 SVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQNE 66
S+PPGFRF+PT+EEL+ YL RK YK +PW + + G + E
Sbjct: 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKE 72
Query: 67 WYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSK 126
WYFFS +DRKYP +WKATG DK + ++ + +G++K LVFY G+AP G+K
Sbjct: 73 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 132
Query: 127 TDWIMHEYRL--QTSENGPIQEEGWVVCRAFRK 157
T+WIMHEYRL + NG + + WV+CR ++K
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 7 SVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQNE 66
S+PPGFRF+PT+EEL+ YL RK YK +PW + + G + E
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKE 75
Query: 67 WYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSK 126
WYFFS +DRKYP +WKATG DK + ++ + +G++K LVFY G+AP G+K
Sbjct: 76 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 135
Query: 127 TDWIMHEYRL--QTSENGPIQEEGWVVCRAFRK 157
T+WIMHEYRL + NG + + WV+CR ++K
Sbjct: 136 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 3 QLESSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYD 62
+ E ++PPGFRFHPT++ELV +YL RK + YK +PWD+ R G
Sbjct: 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG-- 67
Query: 63 EQNEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAP 122
EWYFF+ +DRKYP +WKATG DK V + + +G++K LVFY G+AP
Sbjct: 68 -AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAP 126
Query: 123 NGSKTDWIMHEYRL-------QTSENGPIQEEGWVVCRAFRK 157
G KTDWIMHEYRL ++ G ++ + WV+CR + K
Sbjct: 127 RGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 205 GTNFQQPFGSDNQQLDYIPAGNNS 228
GT+FQ+PF N+ +DYI G S
Sbjct: 390 GTSFQEPFLITNEIVDYISGGGFS 413
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 205 GTNFQQPFGSDNQQLDYIPAGNNS 228
GT+FQ+PF N+ +DYI G S
Sbjct: 371 GTSFQEPFLITNEIVDYISGGGFS 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,377,912
Number of Sequences: 62578
Number of extensions: 421218
Number of successful extensions: 990
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 12
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)