Query 019821
Match_columns 335
No_of_seqs 184 out of 1000
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:36:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.8E-55 2.7E-59 388.9 15.6 153 4-159 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 3.2E-54 1.1E-58 384.0 15.0 153 5-160 14-168 (171)
3 1ldd_A APC2WHB, anaphase promo 26.4 36 0.0012 25.9 2.3 27 8-35 36-63 (74)
4 3nr5_A MAF1, repressor of RNA 12.4 54 0.0018 28.6 0.5 34 40-73 119-153 (164)
5 1r7l_A Phage protein; structur 12.3 81 0.0028 25.7 1.5 16 287-302 8-23 (110)
6 2k2d_A Ring finger and CHY zin 10.5 57 0.002 24.9 0.0 18 286-303 11-28 (79)
7 2crr_A Stromal membrane-associ 10.1 2.5E+02 0.0086 23.4 3.9 31 4-35 97-127 (141)
8 3cpr_A Dihydrodipicolinate syn 9.9 1.1E+02 0.0037 28.3 1.7 18 8-26 118-135 (304)
9 3dz1_A Dihydrodipicolinate syn 9.6 1.3E+02 0.0043 28.0 2.1 18 8-27 109-126 (313)
10 3fkr_A L-2-keto-3-deoxyarabona 9.6 1.4E+02 0.0048 27.6 2.4 20 7-27 109-131 (309)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.8e-55 Score=388.92 Aligned_cols=153 Identities=50% Similarity=1.073 Sum_probs=134.6
Q ss_pred ccCCCCCCceeCCChHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCchhhhhhcCCCCCCCeEEEEeecCCCCCCCCcc
Q 019821 4 LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRT 83 (335)
Q Consensus 4 ~~~~LPPGfRF~PTDEELV~~YLr~Kv~g~pl~~~vI~dvDVY~~ePwdL~~~~~~G~~~~~eWYFFs~r~kK~~~G~R~ 83 (335)
.+..|||||||+|||||||.+||++|+.|.+++.++|.++|||++|||+|++.+..| +++||||+++++||++|.|.
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~R~ 87 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGSRP 87 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----CCS
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCCCc
Confidence 346899999999999999999999999999999999999999999999999986544 47999999999999999999
Q ss_pred cccCCCCeeeecCCCeEEecCCeEEEeEEEEeeeccCCCCCCCcCeEEEEEEeCCCCCCC-------CCCCceEEEEEEE
Q 019821 84 NRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGP-------IQEEGWVVCRAFR 156 (335)
Q Consensus 84 nRatggG~WK~tG~~k~I~~~G~vIG~KKtLvFy~gr~p~g~KT~WiMhEYrL~~~~~~~-------~~~~~~VLCRIyk 156 (335)
||+|++||||++|+++.|..+|.+||+||+|+||.|+++++.||+|+||||+|......+ ...++|||||||+
T Consensus 88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999999988999999999999999999999999999999999864321 2468999999999
Q ss_pred cCC
Q 019821 157 KPT 159 (335)
Q Consensus 157 K~~ 159 (335)
|+.
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.2e-54 Score=383.96 Aligned_cols=153 Identities=48% Similarity=1.023 Sum_probs=131.0
Q ss_pred cCCCCCCceeCCChHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCchhhhhhcCCCCCCCeEEEEeecCCCCCCCCccc
Q 019821 5 ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTN 84 (335)
Q Consensus 5 ~~~LPPGfRF~PTDEELV~~YLr~Kv~g~pl~~~vI~dvDVY~~ePwdL~~~~~~G~~~~~eWYFFs~r~kK~~~G~R~n 84 (335)
+..|||||||+|||||||.+||++|+.|.+++.++|.++|||++|||+|++....| +++||||+++++|+++|.|++
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------CC
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCccc
Confidence 46899999999999999999999999999999999999999999999999986544 579999999999999999999
Q ss_pred ccCCCCeeeecCCCeEEecCCeEEEeEEEEeeeccCCCCCCCcCeEEEEEEeCCCCCC--CCCCCceEEEEEEEcCCC
Q 019821 85 RATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENG--PIQEEGWVVCRAFRKPTP 160 (335)
Q Consensus 85 RatggG~WK~tG~~k~I~~~G~vIG~KKtLvFy~gr~p~g~KT~WiMhEYrL~~~~~~--~~~~~~~VLCRIykK~~~ 160 (335)
|+|++|+||++|+++.|..++.+||+||+|+||+|+++++.||+|+||||+|...+.. ....++|||||||+|+..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999998889999999999999999999999999999999986522 234689999999999865
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=26.41 E-value=36 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=22.3
Q ss_pred CCCCceeCC-ChHHHHHHHHHHHHccCCC
Q 019821 8 VPPGFRFHP-TEEELVGYYLKRKINSLKI 35 (335)
Q Consensus 8 LPPGfRF~P-TDEELV~~YLr~Kv~g~pl 35 (335)
+|.|+.|.. |++||-. ||..|+....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 377999998 9999988 59999987654
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=12.44 E-value=54 Score=28.57 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=18.9
Q ss_pred eeeccCCCCCCchhhhhh-cCCCCCCCeEEEEeec
Q 019821 40 IIDIDLYKIEPWDIQARC-NLGYDEQNEWYFFSHK 73 (335)
Q Consensus 40 I~dvDVY~~ePwdL~~~~-~~G~~~~~eWYFFs~r 73 (335)
+.++|||...|..-.... ..|.--.--||||.++
T Consensus 119 l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKk 153 (164)
T 3nr5_A 119 LAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKR 153 (164)
T ss_dssp GGGCEEEEECCCGGGCTTCSCCCSCEEEEEEEETT
T ss_pred ccCCeEEEEcCCCCCCCCCCCCceeeeeeeEEecC
Confidence 578999999998432221 1222222355666554
No 5
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=12.30 E-value=81 Score=25.73 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=13.6
Q ss_pred ccchhhHhHHHHhhhC
Q 019821 287 VTDWKNLDNLLESQVL 302 (335)
Q Consensus 287 ~~dw~~ld~~~asql~ 302 (335)
.-+=|.+|+|+|+|+.
T Consensus 8 ~m~~Re~drLIAeKvm 23 (110)
T 1r7l_A 8 AMKPRDINKLIASKIF 23 (110)
T ss_dssp SCCHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHhc
Confidence 3456999999999997
No 6
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=10.46 E-value=57 Score=24.86 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=0.0
Q ss_pred cccchhhHhHHHHhhhCC
Q 019821 286 NVTDWKNLDNLLESQVLM 303 (335)
Q Consensus 286 ~~~dw~~ld~~~asql~~ 303 (335)
+..-|+.||..||+|-..
T Consensus 11 m~~~~~~lD~~ia~~pmP 28 (79)
T 2k2d_A 11 MTRYWRQLDDEVAQTPMP 28 (79)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 344599999999998654
No 7
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.05 E-value=2.5e+02 Score=23.44 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=23.3
Q ss_pred ccCCCCCCceeCCChHHHHHHHHHHHHccCCC
Q 019821 4 LESSVPPGFRFHPTEEELVGYYLKRKINSLKI 35 (335)
Q Consensus 4 ~~~~LPPGfRF~PTDEELV~~YLr~Kv~g~pl 35 (335)
++..||++++ .|+..+.+..|++.|-....+
T Consensus 97 ~e~~lp~~~~-~P~~~~~~e~fIr~KY~~k~f 127 (141)
T 2crr_A 97 YEANLPENFR-RPQTDQAVEFFIRDKYEKKKY 127 (141)
T ss_dssp GGGSCCTTCC-CCCSHHHHHHHHHHHHTSCTT
T ss_pred HHhcCCcccC-CCCchHHHHHHHHHHHhcCcc
Confidence 3567888875 477777888999998876654
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.89 E-value=1.1e+02 Score=28.35 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=14.4
Q ss_pred CCCCceeCCChHHHHHHHH
Q 019821 8 VPPGFRFHPTEEELVGYYL 26 (335)
Q Consensus 8 LPPGfRF~PTDEELV~~YL 26 (335)
+|| |.|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 558899999999863
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=9.60 E-value=1.3e+02 Score=27.97 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=13.7
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 019821 8 VPPGFRFHPTEEELVGYYLK 27 (335)
Q Consensus 8 LPPGfRF~PTDEELV~~YLr 27 (335)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5674 56999999998643
No 10
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=9.58 E-value=1.4e+02 Score=27.63 Aligned_cols=20 Identities=25% Similarity=0.855 Sum_probs=15.0
Q ss_pred CCCCCce---eCCChHHHHHHHHH
Q 019821 7 SVPPGFR---FHPTEEELVGYYLK 27 (335)
Q Consensus 7 ~LPPGfR---F~PTDEELV~~YLr 27 (335)
-+|| |. |.||+++|+.||-.
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHHH
T ss_pred EcCC-CCccCCCCCHHHHHHHHHH
Confidence 3566 44 79999999998643
Done!