Query 019824
Match_columns 335
No_of_seqs 212 out of 1438
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2.9E-65 6.4E-70 493.7 16.4 223 93-333 27-311 (324)
2 cd00693 secretory_peroxidase H 100.0 1.6E-64 3.4E-69 485.7 18.0 223 93-333 4-286 (298)
3 PLN02879 L-ascorbate peroxidas 100.0 5.4E-63 1.2E-67 464.3 20.4 224 102-334 15-251 (251)
4 PLN02608 L-ascorbate peroxidas 100.0 1.2E-62 2.5E-67 469.5 22.1 223 103-334 13-248 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.1E-62 2.4E-67 463.3 21.3 229 99-332 8-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.5E-62 3.1E-67 461.6 20.1 228 96-332 8-249 (250)
7 cd00692 ligninase Ligninase an 100.0 1E-59 2.3E-64 456.2 20.0 229 103-335 16-280 (328)
8 PF00141 peroxidase: Peroxidas 100.0 1.6E-56 3.4E-61 416.2 7.0 188 107-310 1-230 (230)
9 cd00314 plant_peroxidase_like 100.0 2.4E-54 5.3E-59 405.1 19.2 222 106-327 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.5E-54 3.4E-59 427.4 15.8 265 67-333 3-398 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 2E-51 4.4E-56 427.6 15.2 263 67-331 13-403 (716)
12 PRK15061 catalase/hydroperoxid 100.0 2.2E-49 4.8E-54 410.7 16.1 263 67-331 15-409 (726)
13 cd08201 plant_peroxidase_like_ 100.0 5.8E-46 1.3E-50 349.8 12.8 202 118-327 40-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 3.4E-44 7.3E-49 341.9 16.6 211 119-329 29-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2E-40 4.3E-45 345.5 18.0 237 92-329 415-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.2E-38 2.6E-43 330.8 17.0 238 92-329 421-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.2E-35 2.7E-40 297.3 16.5 262 67-330 28-417 (730)
18 COG0376 KatG Catalase (peroxid 99.7 6.7E-18 1.5E-22 170.4 12.5 236 92-329 432-725 (730)
19 PF11172 DUF2959: Protein of u 39.3 6.5 0.00014 36.6 -1.2 13 7-19 2-14 (201)
20 PF09027 GTPase_binding: GTPas 30.7 18 0.00038 28.1 0.2 33 237-269 2-42 (66)
21 PRK13859 type IV secretion sys 29.3 37 0.00081 25.1 1.6 30 184-213 9-41 (55)
22 TIGR00874 talAB transaldolase. 22.3 93 0.002 30.9 3.5 61 192-252 164-240 (317)
23 PTZ00411 transaldolase-like pr 20.8 92 0.002 31.2 3.1 58 195-252 179-252 (333)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.9e-65 Score=493.66 Aligned_cols=223 Identities=30% Similarity=0.407 Sum_probs=205.4
Q ss_pred ccccCCCChhHHHHHHHHHHHHHhc--CchHHHHHHHhhhcccccccCCCCCCCCcccc-----cccCcccCCchhHHHH
Q 019824 93 LGAKAESGMSDYLLMKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY-----ELERPENAGLNKPLKI 165 (335)
Q Consensus 93 l~~~~~~~~~~~~iVr~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~-----E~~~p~N~gL~~~~~~ 165 (335)
..+|.++||.+|+||+++|++.+.+ +++|++|||+||||+ ++||||||++ |+++++|.+| +||++
T Consensus 27 ~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~ 98 (324)
T PLN03030 27 VGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYDV 98 (324)
T ss_pred cchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHHH
Confidence 3567899999999999999999986 799999999999997 6899999875 7889999988 69999
Q ss_pred HHHHHhhhcccCC--CChhhHHhhhchhhhhcCCCCCCCCCCCCCCCCCC--CCCCCCCCcccchhHHHHHHHhcCCChh
Q 019824 166 LEKAKGDVNAIRP--VSWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEP--DPEGKLPQETLDASGLKQCFQRKGFSAQ 241 (335)
Q Consensus 166 I~~iK~~le~~cp--VScADiialAar~AV~~~GGP~i~v~~GR~D~~~s--~~~~~LP~p~~~~~~l~~~F~~~GLs~~ 241 (335)
|+.||+++|+.|| |||||||++||||||+++|||.|+|++||+|+.++ ....+||.|+.++++|++.|+++||+.+
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~ 178 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQ 178 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHH
Confidence 9999999999999 99999999999999999999999999999999875 3345899999999999999999999999
Q ss_pred hHHHHhcccccCCCC-----------------------------------------------CCCCcccchHHHHHHhhC
Q 019824 242 ELVALSGAHTLGTKG-----------------------------------------------FGNPIVFDNSYYKILLEK 274 (335)
Q Consensus 242 EmVALsGaHTiG~~~-----------------------------------------------~~tP~~FDN~Yyk~Ll~~ 274 (335)
|||+|+||||||++| ..+|.+|||+||+||+++
T Consensus 179 DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~ 258 (324)
T PLN03030 179 DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNG 258 (324)
T ss_pred HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhc
Confidence 999999999999853 025679999999999998
Q ss_pred CCccCCCCCCccccccccccccChhHHHHHHHHhhCH----HHHHHHHHHHHHHHHhCCCCCC
Q 019824 275 PWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQ----NMFFEDFKNAYVKLVNSGARWR 333 (335)
Q Consensus 275 ~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~----~~F~~dFa~Am~KM~~lgv~~~ 333 (335)
+ | +|+|||+|+.|++|+++|++||.|+ ++|+++|++||+||+++||++-
T Consensus 259 r-----G-----lL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG 311 (324)
T PLN03030 259 R-----G-----ILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTG 311 (324)
T ss_pred C-----C-----CcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCC
Confidence 6 5 6999999999999999999999875 5999999999999999999975
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.6e-64 Score=485.69 Aligned_cols=223 Identities=39% Similarity=0.583 Sum_probs=207.1
Q ss_pred ccccCCCChhHHHHHHHHHHHHHhc--CchHHHHHHHhhhcccccccCCCCCCCCcccc--------cccCcccCCchhH
Q 019824 93 LGAKAESGMSDYLLMKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--------ELERPENAGLNKP 162 (335)
Q Consensus 93 l~~~~~~~~~~~~iVr~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--------E~~~p~N~gL~~~ 162 (335)
..+|.++||++|+||+++|++.+.+ +++|++|||+||||+ ++||||||++ |+++++|.++ ++
T Consensus 4 ~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g 75 (298)
T cd00693 4 VGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RG 75 (298)
T ss_pred cccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-ch
Confidence 3567889999999999999999986 789999999999997 5899999975 7889999998 69
Q ss_pred HHHHHHHHhhhcccCC--CChhhHHhhhchhhhhcCCCCCCCCCCCCCCCCCCC--CCCCCCCcccchhHHHHHHHhcCC
Q 019824 163 LKILEKAKGDVNAIRP--VSWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD--PEGKLPQETLDASGLKQCFQRKGF 238 (335)
Q Consensus 163 ~~~I~~iK~~le~~cp--VScADiialAar~AV~~~GGP~i~v~~GR~D~~~s~--~~~~LP~p~~~~~~l~~~F~~~GL 238 (335)
+++|++||+++|+.|| |||||||+||||+||+++|||.|+|++||+|+.++. +.+.||.|+.+++++++.|+++||
T Consensus 76 ~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~ 155 (298)
T cd00693 76 FDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGL 155 (298)
T ss_pred hHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCC
Confidence 9999999999999998 999999999999999999999999999999998653 336899999999999999999999
Q ss_pred ChhhHHHHhcccccCCCC----------C------------------------------------CCCcccchHHHHHHh
Q 019824 239 SAQELVALSGAHTLGTKG----------F------------------------------------GNPIVFDNSYYKILL 272 (335)
Q Consensus 239 s~~EmVALsGaHTiG~~~----------~------------------------------------~tP~~FDN~Yyk~Ll 272 (335)
+++|||||+||||||++| | .+|.+|||+||++|+
T Consensus 156 ~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 156 TVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred CHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHH
Confidence 999999999999999964 1 468899999999999
Q ss_pred hCCCccCCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCC
Q 019824 273 EKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGARWR 333 (335)
Q Consensus 273 ~~~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~lgv~~~ 333 (335)
.++ | +|+|||+|+.|++|+++|++||.||+.|+++|++||+||+++||++-
T Consensus 236 ~~~-----g-----lL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg 286 (298)
T cd00693 236 AGR-----G-----LLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTG 286 (298)
T ss_pred hcc-----c-----CccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccC
Confidence 875 5 69999999999999999999999999999999999999999999874
No 3
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.4e-63 Score=464.32 Aligned_cols=224 Identities=40% Similarity=0.680 Sum_probs=206.4
Q ss_pred hHHHHHHHHHHHHHhc-CchHHHHHHHhhhcccccccCCCCCCCCcccc--cccCcccCCchhHHHHHHHHHhhhcccCC
Q 019824 102 SDYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRP 178 (335)
Q Consensus 102 ~~~~iVr~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~~cp 178 (335)
+.++-++++|.+.+.+ ..+|.+|||+||||+||+..++.|||||||++ |+++|+|.||+.++++|++||+++ ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~iK~~~---~~ 91 (251)
T PLN02879 15 KAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIKELF---PI 91 (251)
T ss_pred HHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHHHHHHHHHc---CC
Confidence 4556667888888865 78999999999999999999999999999998 999999999988999999999987 35
Q ss_pred CChhhHHhhhchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHhcCCChhhHHHHhcccccCCCCC-
Q 019824 179 VSWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKGF- 257 (335)
Q Consensus 179 VScADiialAar~AV~~~GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~GLs~~EmVALsGaHTiG~~~~- 257 (335)
|||||||+||||+||+.+|||.|+|++||+|+..++++++||.|+.+++++++.|+++||+++|||||+||||||++|.
T Consensus 92 VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~ 171 (251)
T PLN02879 92 LSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKE 171 (251)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------CCCcccchHHHHHHhhCCCccCCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhC
Q 019824 258 ---------GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNS 328 (335)
Q Consensus 258 ---------~tP~~FDN~Yyk~Ll~~~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~l 328 (335)
.+|.+|||+||++|+.+.+. | .++|+||++|+.|++|+++|++||.||++|+++|+.||+||+++
T Consensus 172 r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~---g---ll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~l 245 (251)
T PLN02879 172 RSGFEGAWTPNPLIFDNSYFKEILSGEKE---G---LLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSEL 245 (251)
T ss_pred cccCCCCCCCCccceeHHHHHHHHcCCcC---C---CccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHcc
Confidence 37999999999999987421 3 34589999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019824 329 GARWRS 334 (335)
Q Consensus 329 gv~~~~ 334 (335)
|+.+++
T Consensus 246 g~~~~~ 251 (251)
T PLN02879 246 GFADKE 251 (251)
T ss_pred CCCCCC
Confidence 998874
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.2e-62 Score=469.54 Aligned_cols=223 Identities=38% Similarity=0.634 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHhc-CchHHHHHHHhhhcccccccCCCCCCCCcccc--cccCcccCCchhHHHHHHHHHhhhcccCCC
Q 019824 103 DYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRPV 179 (335)
Q Consensus 103 ~~~iVr~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~~cpV 179 (335)
..+.++++|+++..+ .++|.+|||+||||+||+..+++|||||||++ |+++|+|.+|++++++|++||+++ ..|
T Consensus 13 ~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~iK~~~---~~V 89 (289)
T PLN02608 13 EIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPVKAKH---PKI 89 (289)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHHHHHc---CCc
Confidence 356778888887775 78999999999999999999999999999997 788999999988999999999987 259
Q ss_pred ChhhHHhhhchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHhcCCChhhHHHHhcccccCCCC---
Q 019824 180 SWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKG--- 256 (335)
Q Consensus 180 ScADiialAar~AV~~~GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~GLs~~EmVALsGaHTiG~~~--- 256 (335)
||||||+||||+||+.+|||.|+|++||+|+.+++++++||.|..+++++++.|+++||+++|||+|+||||||.+|
T Consensus 90 ScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~r 169 (289)
T PLN02608 90 TYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPER 169 (289)
T ss_pred CHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccccccccccccC
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999976
Q ss_pred --C-----CCCcccchHHHHHHhhCCCccCCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhCC
Q 019824 257 --F-----GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 329 (335)
Q Consensus 257 --~-----~tP~~FDN~Yyk~Ll~~~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~lg 329 (335)
+ .+|.+|||+||++|++++|. | .++|+|||+|+.|++|+++|+.||.||++|+++|++||+||+++|
T Consensus 170 ~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~---g---ll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lg 243 (289)
T PLN02608 170 SGFDGPWTKEPLKFDNSYFVELLKGESE---G---LLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELG 243 (289)
T ss_pred CCCCCCCCCCCCccChHHHHHHHcCCcC---C---ccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCC
Confidence 1 47899999999999987432 3 345899999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 019824 330 ARWRS 334 (335)
Q Consensus 330 v~~~~ 334 (335)
|++.+
T Consensus 244 vltg~ 248 (289)
T PLN02608 244 FTPPS 248 (289)
T ss_pred CCCCC
Confidence 99864
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.1e-62 Score=463.34 Aligned_cols=229 Identities=41% Similarity=0.731 Sum_probs=210.3
Q ss_pred CChhHHHHHHHHHHHHHhc-CchHHHHHHHhhhcccccccCCCCCCCCcccc--cccCcccCCchhHHHHHHHHHhhhcc
Q 019824 99 SGMSDYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNA 175 (335)
Q Consensus 99 ~~~~~~~iVr~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~ 175 (335)
-...+++||+++|++++.. ++++++|||+||||++++.....|||||++++ |+++|+|.+|.+++++|++||+++.
T Consensus 8 ~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~- 86 (253)
T cd00691 8 YAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKYP- 86 (253)
T ss_pred ccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHcC-
Confidence 3467889999999999985 78999999999999988888788899999876 8999999999889999999999872
Q ss_pred cCCCChhhHHhhhchhhhhcCCCCCCCCCCCCCCCCCCC---CCCCCCCcccchhHHHHHHHhcCCChhhHHHHhccccc
Q 019824 176 IRPVSWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD---PEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTL 252 (335)
Q Consensus 176 ~cpVScADiialAar~AV~~~GGP~i~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~GLs~~EmVALsGaHTi 252 (335)
.|||||||+||||+||+.+|||.|+|++||+|+.++. ++++||.|..+++++++.|+++||+++|||+|+|||||
T Consensus 87 --~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTi 164 (253)
T cd00691 87 --DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTL 164 (253)
T ss_pred --CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccccee
Confidence 4999999999999999999999999999999999875 77889999999999999999999999999999999999
Q ss_pred CCCCC----------CCCcccchHHHHHHhhCCCccCCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHH
Q 019824 253 GTKGF----------GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAY 322 (335)
Q Consensus 253 G~~~~----------~tP~~FDN~Yyk~Ll~~~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am 322 (335)
|++|. .+|.+|||+||++|+.++|.+ +.++..+|+||++|+.|++|+.+|+.||.|+++|+++|++||
T Consensus 165 G~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~--~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am 242 (253)
T cd00691 165 GRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKL--PTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAH 242 (253)
T ss_pred ecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCcc--CcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHH
Confidence 99762 489999999999999988743 233456899999999999999999999999999999999999
Q ss_pred HHHHhCCCCC
Q 019824 323 VKLVNSGARW 332 (335)
Q Consensus 323 ~KM~~lgv~~ 332 (335)
+||+++||+|
T Consensus 243 ~Km~~l~v~~ 252 (253)
T cd00691 243 KKLSELGVPF 252 (253)
T ss_pred HHHHhcCCCC
Confidence 9999999987
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.5e-62 Score=461.59 Aligned_cols=228 Identities=36% Similarity=0.620 Sum_probs=210.2
Q ss_pred cCCCChhHHHHHHHHHHHHHhc-CchHHHHHHHhhhcccccccCCCCCCCCcccc--cccCcccCCchhHHHHHHHHHhh
Q 019824 96 KAESGMSDYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGD 172 (335)
Q Consensus 96 ~~~~~~~~~~iVr~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~ 172 (335)
..+.|+.+++.++++|++.+.. +++|.+|||+||||++|+.....|||||||++ |+++++|.+|.+++++|+.||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ik~~ 87 (250)
T PLN02364 8 VSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQ 87 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHHHHHH
Confidence 4577889999999999999975 89999999999999999998888999999987 78899999998899999999998
Q ss_pred hcccCCCChhhHHhhhchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHh-cCCChhhHHHHhcccc
Q 019824 173 VNAIRPVSWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQR-KGFSAQELVALSGAHT 251 (335)
Q Consensus 173 le~~cpVScADiialAar~AV~~~GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~-~GLs~~EmVALsGaHT 251 (335)
+ ..|||||||+||||+||+.+|||.|+|++||+|+.+++++++||.|..+++++++.|++ +||+++|||||+||||
T Consensus 88 ~---~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHT 164 (250)
T PLN02364 88 F---PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHT 164 (250)
T ss_pred c---CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeeccee
Confidence 7 35999999999999999999999999999999999999999999999999999999997 5999999999999999
Q ss_pred cCCCCC----------CCCcccchHHHHHHhhCCCccCCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHH
Q 019824 252 LGTKGF----------GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNA 321 (335)
Q Consensus 252 iG~~~~----------~tP~~FDN~Yyk~Ll~~~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~A 321 (335)
||++|. .+|.+|||+||++|+.+.|. | .+.|+|||+|+.|++|+.+|+.||.||+.|+++|++|
T Consensus 165 iG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~---g---ll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~A 238 (250)
T PLN02364 165 LGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKE---G---LLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEA 238 (250)
T ss_pred eccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcC---C---CccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHH
Confidence 999763 47899999999999987432 4 2346799999999999999999999999999999999
Q ss_pred HHHHHhCCCCC
Q 019824 322 YVKLVNSGARW 332 (335)
Q Consensus 322 m~KM~~lgv~~ 332 (335)
|+||+++|+.+
T Consensus 239 m~Km~~lg~~~ 249 (250)
T PLN02364 239 HMKLSELGFAD 249 (250)
T ss_pred HHHHHccCCCC
Confidence 99999999865
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1e-59 Score=456.24 Aligned_cols=229 Identities=32% Similarity=0.441 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHhc-----CchHHHHHHHhhhccccc-----ccCCCCCCCCcccc----cccCcccCCchhHHHHHHH
Q 019824 103 DYLLMKEEVTKVVSK-----GKAASVLRLAFHDAGTFE-----MDDNSGGMNGSIVY----ELERPENAGLNKPLKILEK 168 (335)
Q Consensus 103 ~~~iVr~~V~~~~~~-----~~aa~lLRL~FHDc~s~~-----~~~~~gG~dGSi~~----E~~~p~N~gL~~~~~~I~~ 168 (335)
.|..|+++|++.+.. ..|+.+|||+||||++|+ ...+.|||||||+. |+++++|.||+ ++|+.
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~---~vvd~ 92 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLD---EIVEA 92 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHH---HHHHH
Confidence 578899999999863 368889999999999988 35567999999975 88899999986 78889
Q ss_pred HHhhhcccCCCChhhHHhhhchhhhhcC-CCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHhcCCChhhHHHHh
Q 019824 169 AKGDVNAIRPVSWADMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALS 247 (335)
Q Consensus 169 iK~~le~~cpVScADiialAar~AV~~~-GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~GLs~~EmVALs 247 (335)
+|..+|+.| |||||||+||||+||+.| |||.|+|++||+|++++.++++||.|+.++++|++.|+++||+.+|||+|+
T Consensus 93 lk~~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLs 171 (328)
T cd00692 93 LRPFHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALL 171 (328)
T ss_pred HHHHHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhc
Confidence 999999888 999999999999999965 999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCC-----------CCCcccchHHHHHHh-hCCCccCC---------CCCCccccccccccccChhHHHHHHH
Q 019824 248 GAHTLGTKGF-----------GNPIVFDNSYYKILL-EKPWQSSA---------GMSSMIGLPSDRALVEDDECLRWIKM 306 (335)
Q Consensus 248 GaHTiG~~~~-----------~tP~~FDN~Yyk~Ll-~~~w~~~~---------G~~~~~lL~SD~aL~~D~~t~~~V~~ 306 (335)
||||||++|. .||.+|||+||+|++ ++.|.+.. ..++.++|+||++|+.|++|+.+|++
T Consensus 172 GAHTiG~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~ 251 (328)
T cd00692 172 AAHSVAAQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQS 251 (328)
T ss_pred ccccccccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHH
Confidence 9999999852 368999999999987 45442211 12356789999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHhCCCCCCCC
Q 019824 307 YADNQNMFFEDFKNAYVKLVNSGARWRSL 335 (335)
Q Consensus 307 yA~d~~~F~~dFa~Am~KM~~lgv~~~~~ 335 (335)
||+||++|+++|++||+||+++||...+|
T Consensus 252 fa~dq~~f~~~Fa~Am~KLs~lgv~~~~l 280 (328)
T cd00692 252 FVNNQAKMNAAFAAAMLKLSLLGQDNISL 280 (328)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCCcchh
Confidence 99999999999999999999999998765
No 8
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.6e-56 Score=416.17 Aligned_cols=188 Identities=46% Similarity=0.753 Sum_probs=170.3
Q ss_pred HHHHHHHHHhc--CchHHHHHHHhhhcccccccCCCCCCCCcccc---cccCcccCCchhHHHHHHHHHhhhcccCC--C
Q 019824 107 MKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVNAIRP--V 179 (335)
Q Consensus 107 Vr~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~---E~~~p~N~gL~~~~~~I~~iK~~le~~cp--V 179 (335)
||++|++++.+ +++|++|||+||||++| |||||||+. |+++|+|.+|.+++++|++||+++|+.|| |
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 78999999986 89999999999999855 999999977 99999999998899999999999999998 9
Q ss_pred ChhhHHhhhchhhhhcCCCCCCCCCCCCCCCCCCCCCC--CCCCcccchhHHHHHHHhcCCChhhHHHHhcccccCCCCC
Q 019824 180 SWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG--KLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKGF 257 (335)
Q Consensus 180 ScADiialAar~AV~~~GGP~i~v~~GR~D~~~s~~~~--~LP~p~~~~~~l~~~F~~~GLs~~EmVALsGaHTiG~~~~ 257 (335)
||||||++||++||+.+|||.|+|++||+|+..+.+.+ +||.|..++++|++.|+++|||++|||||+||||||.+|.
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999986644 5999999999999999999999999999999999999873
Q ss_pred C---------------------------------CCcccchHHHHHHhhCCCccCCCCCCccccccccccccChhHHHHH
Q 019824 258 G---------------------------------NPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWI 304 (335)
Q Consensus 258 ~---------------------------------tP~~FDN~Yyk~Ll~~~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V 304 (335)
. +|.+|||+||++|++++ | +|+||++|+.|++|+++|
T Consensus 155 ~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~dtp~~fDN~Yy~~ll~~~-----g-----ll~SD~~L~~d~~t~~~V 224 (230)
T PF00141_consen 155 SSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLDTPTVFDNSYYKNLLNGR-----G-----LLPSDQALLNDPETRPIV 224 (230)
T ss_dssp GCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESSSTTS-SSHHHHHHHHTE-----E-----EEHHHHHHHHSTTHHHHH
T ss_pred ccccccccccccccccccceeccCCCccccccccCCCcchhHHHHHHhcCC-----C-----cCHHHHHHhcCHHHHHHH
Confidence 2 69999999999999975 4 799999999999999999
Q ss_pred HHHhhC
Q 019824 305 KMYADN 310 (335)
Q Consensus 305 ~~yA~d 310 (335)
++||+|
T Consensus 225 ~~yA~d 230 (230)
T PF00141_consen 225 ERYAQD 230 (230)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 999986
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.4e-54 Score=405.13 Aligned_cols=222 Identities=50% Similarity=0.813 Sum_probs=199.9
Q ss_pred HHHHHHHHHHhc--CchHHHHHHHhhhcccccccC-CCCCCCCcccc--cccCcccCCchhHHHHHHHHHhhhcccCCCC
Q 019824 106 LMKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDD-NSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRPVS 180 (335)
Q Consensus 106 iVr~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~-~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~~cpVS 180 (335)
.|++.|++.+.+ ..++++|||+||||++++..+ ..|||||||++ |+++|+|.+|.+++++|++||+++|..+.||
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 467777777765 789999999999999998766 78999999998 6899999998899999999999998733499
Q ss_pred hhhHHhhhchhhhhcC--CCCCCCCCCCCCCCC-----CCCCCCCCCCcccchhHHHHHHHhcCCChhhHHHHh-ccccc
Q 019824 181 WADMIALGGAVAVSVC--GGPNIPVPMGRLDSM-----EPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALS-GAHTL 252 (335)
Q Consensus 181 cADiialAar~AV~~~--GGP~i~v~~GR~D~~-----~s~~~~~LP~p~~~~~~l~~~F~~~GLs~~EmVALs-GaHTi 252 (335)
|||||++|+++||+.+ |||.|+|++||+|+. .++|.+.+|.|..+++++++.|.++||+++|||||+ ||||+
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti 161 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTL 161 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeec
Confidence 9999999999999999 999999999999998 577888899999999999999999999999999999 99999
Q ss_pred -CCCCC------------CCCcccchHHHHHHhhCCCccCC------CCCCccccccccccccChhHHHHHHHHhhCHHH
Q 019824 253 -GTKGF------------GNPIVFDNSYYKILLEKPWQSSA------GMSSMIGLPSDRALVEDDECLRWIKMYADNQNM 313 (335)
Q Consensus 253 -G~~~~------------~tP~~FDN~Yyk~Ll~~~w~~~~------G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~ 313 (335)
|.+|. .+|.+|||+||++|+.+.|.... +....++|+||++|+.|++|+.+|++||.|+++
T Consensus 162 ~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~ 241 (255)
T cd00314 162 GGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEK 241 (255)
T ss_pred cCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHH
Confidence 99752 37999999999999999886432 223456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 019824 314 FFEDFKNAYVKLVN 327 (335)
Q Consensus 314 F~~dFa~Am~KM~~ 327 (335)
|+++|++||+||++
T Consensus 242 f~~~Fa~a~~Km~~ 255 (255)
T cd00314 242 FFEDFAKAWIKMVN 255 (255)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999974
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.5e-54 Score=427.42 Aligned_cols=265 Identities=29% Similarity=0.448 Sum_probs=233.5
Q ss_pred cccccchhhhhhccccccchh----hhcccccccCCCChhHHHHHHHHHHHHHhc----------CchHHHHHHHhhhcc
Q 019824 67 SNRRRRGLLLTATLPFLLPLH----EFVQDLGAKAESGMSDYLLMKEEVTKVVSK----------GKAASVLRLAFHDAG 132 (335)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~~----~~~~~l~~~~~~~~~~~~iVr~~V~~~~~~----------~~aa~lLRL~FHDc~ 132 (335)
++++|.+|+..+-|-.|.++. .+..+|.|..+....+|+.|+++|++++.. ..++-+|||+|||++
T Consensus 3 ~~~~~~wwp~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~Ag 82 (409)
T cd00649 3 GTSNQDWWPNRLNLKILHQHSPKSNPMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAG 82 (409)
T ss_pred CCCcCCcCCcccCchhhccCCCCCCCCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccc
Confidence 346799999999999998763 555678888899999999999999999985 367899999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcccCCchhHHHHHHHHHhhhcccCCCChhhHHhhhchhhhhcCCCCCCCCCCCCCC
Q 019824 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRPVSWADMIALGGAVAVSVCGGPNIPVPMGRLD 209 (335)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~~cpVScADiialAar~AV~~~GGP~i~v~~GR~D 209 (335)
||+..+++||+| |+|++ |.+++.|.||.+++++|++||+++. ..||+||+|+||+.+||+.+|||.|+|.+||.|
T Consensus 83 Ty~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pik~k~~--~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~D 160 (409)
T cd00649 83 TYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYG--NKISWADLMILAGNVALESMGFKTFGFAGGRED 160 (409)
T ss_pred cccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHHHHcCCCcccccCCCCc
Confidence 999999999997 79998 5789999999999999999999885 249999999999999999999999999999999
Q ss_pred CCCCC--------------------------------------CCC--CCCCcccchhHHHHHHHhcCCChhhHHHH-hc
Q 019824 210 SMEPD--------------------------------------PEG--KLPQETLDASGLKQCFQRKGFSAQELVAL-SG 248 (335)
Q Consensus 210 ~~~s~--------------------------------------~~~--~LP~p~~~~~~l~~~F~~~GLs~~EmVAL-sG 248 (335)
...+. |++ .||+|..++.+|++.|.+||||++||||| +|
T Consensus 161 a~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sG 240 (409)
T cd00649 161 VWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAG 240 (409)
T ss_pred cCCCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccC
Confidence 86431 334 69999999999999999999999999999 59
Q ss_pred ccccCCCCC---------------------------------------------CCCcccchHHHHHHhhCCCccC---C
Q 019824 249 AHTLGTKGF---------------------------------------------GNPIVFDNSYYKILLEKPWQSS---A 280 (335)
Q Consensus 249 aHTiG~~~~---------------------------------------------~tP~~FDN~Yyk~Ll~~~w~~~---~ 280 (335)
|||||++|. .+|.+|||+||++|++.+|+.. .
T Consensus 241 AHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~ 320 (409)
T cd00649 241 GHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPA 320 (409)
T ss_pred CcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCC
Confidence 999998652 3688999999999999888632 1
Q ss_pred C-----------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHH--HhCCCCCC
Q 019824 281 G-----------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKL--VNSGARWR 333 (335)
Q Consensus 281 G-----------------------~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM--~~lgv~~~ 333 (335)
| ....+||+||++|+.|++++++|++||.||++||++|++||+|| .++|++.+
T Consensus 321 g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~ 398 (409)
T cd00649 321 GAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSR 398 (409)
T ss_pred CcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhh
Confidence 1 01468999999999999999999999999999999999999999 57887765
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2e-51 Score=427.57 Aligned_cols=263 Identities=29% Similarity=0.445 Sum_probs=229.0
Q ss_pred cccccchhhhhhccccccchh----hhcccccccCCCChhHHHHHHHHHHHHHhc----------CchHHHHHHHhhhcc
Q 019824 67 SNRRRRGLLLTATLPFLLPLH----EFVQDLGAKAESGMSDYLLMKEEVTKVVSK----------GKAASVLRLAFHDAG 132 (335)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~~----~~~~~l~~~~~~~~~~~~iVr~~V~~~~~~----------~~aa~lLRL~FHDc~ 132 (335)
+.++|.+|+.-.-|-.|.++. .+..+|+|..+....+++.|+++|+++++. ..+|-+|||+||+++
T Consensus 13 ~~~~~~wwp~~l~~~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAg 92 (716)
T TIGR00198 13 TGQTGDWWPNALNLDILHQHDRKTNPMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAG 92 (716)
T ss_pred CCCccCcCCcccCchhhccCCCCCCCCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccc
Confidence 455799999999999999763 555678899999999999999999999986 357889999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcccCCchhHHHHHHHHHhhhcccCCCChhhHHhhhchhhhhcCCCCCCCCCCCCCC
Q 019824 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRPVSWADMIALGGAVAVSVCGGPNIPVPMGRLD 209 (335)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~~cpVScADiialAar~AV~~~GGP~i~v~~GR~D 209 (335)
||+..+++||++ |+|++ |.++|.|.+|.+++.+|++||+++. ..|||||||+|||++||+.+|||.|+|.+||+|
T Consensus 93 TYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pIk~kyp--~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D 170 (716)
T TIGR00198 93 TYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPIKKKYG--NKLSWADLIILAGTVAYESMGLKVFGFAGGRED 170 (716)
T ss_pred cccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHHHHHCC--CceeHHHHHHHHHHHHHHHhCCCccCCCCCCCC
Confidence 999999999985 88999 5779999999999999999999743 139999999999999999999999999999999
Q ss_pred CCCCC-------------------------------------CCC--CCCCcccchhHHHHHHHhcCCChhhHHHHh-cc
Q 019824 210 SMEPD-------------------------------------PEG--KLPQETLDASGLKQCFQRKGFSAQELVALS-GA 249 (335)
Q Consensus 210 ~~~s~-------------------------------------~~~--~LP~p~~~~~~l~~~F~~~GLs~~EmVALs-Ga 249 (335)
+..++ +++ .+|.|..++.+|++.|.+||||++|||||+ ||
T Consensus 171 ~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGa 250 (716)
T TIGR00198 171 IWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGG 250 (716)
T ss_pred CCCcccccccccccchhhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCc
Confidence 94321 222 699999999999999999999999999995 99
Q ss_pred cccCCCCC---------------------------------------------CCCcccchHHHHHHhhCCCccCC---C
Q 019824 250 HTLGTKGF---------------------------------------------GNPIVFDNSYYKILLEKPWQSSA---G 281 (335)
Q Consensus 250 HTiG~~~~---------------------------------------------~tP~~FDN~Yyk~Ll~~~w~~~~---G 281 (335)
||||.+|. .+|.+|||+||+||+++.|+... |
T Consensus 251 HTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g 330 (716)
T TIGR00198 251 HTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAG 330 (716)
T ss_pred eeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCC
Confidence 99998651 26889999999999998775321 1
Q ss_pred ---------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCC
Q 019824 282 ---------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN--SGAR 331 (335)
Q Consensus 282 ---------------------~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~--lgv~ 331 (335)
....+||+||++|..|++++++|++||.|+++|+++|++||+||++ +|.+
T Consensus 331 ~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~ 403 (716)
T TIGR00198 331 AWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPK 403 (716)
T ss_pred CceeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCch
Confidence 1237899999999999999999999999999999999999999995 5544
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.2e-49 Score=410.66 Aligned_cols=263 Identities=27% Similarity=0.435 Sum_probs=230.0
Q ss_pred cccccchhhhhhccccccch----hhhcccccccCCCChhHHHHHHHHHHHHHhc----------CchHHHHHHHhhhcc
Q 019824 67 SNRRRRGLLLTATLPFLLPL----HEFVQDLGAKAESGMSDYLLMKEEVTKVVSK----------GKAASVLRLAFHDAG 132 (335)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~----~~~~~~l~~~~~~~~~~~~iVr~~V~~~~~~----------~~aa~lLRL~FHDc~ 132 (335)
++.+|.+|+.-.-|-.|.++ ..+..+|+|..+....+|+.|+++|+++++. ..+|-+|||+||+++
T Consensus 15 ~~~~~~wwp~~l~l~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~Ag 94 (726)
T PRK15061 15 GTSNRDWWPNQLNLDILHQHSSKSNPMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAG 94 (726)
T ss_pred CCCcccCCCcccCchhhccCCCCCCCCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccc
Confidence 56789999999999999986 3556678999999999999999999999985 357889999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcccCCchhHHHHHHHHHhhhcccCCCChhhHHhhhchhhhhcCCCCCCCCCCCCCC
Q 019824 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRPVSWADMIALGGAVAVSVCGGPNIPVPMGRLD 209 (335)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~~cpVScADiialAar~AV~~~GGP~i~v~~GR~D 209 (335)
||+..+++||+| |+|++ |.++|.|.+|.+++.+|++||+++. ..||+||+|+||+..|||.+|||.|+|..||.|
T Consensus 95 TYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~pik~ky~--~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D 172 (726)
T PRK15061 95 TYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYG--NKISWADLMILAGNVALESMGFKTFGFAGGRED 172 (726)
T ss_pred cccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHcCCCccCcCCCCCC
Confidence 999999999996 88998 5789999999999999999999985 249999999999999999999999999999999
Q ss_pred CCCCCC---------------------------------------CC--CCCCcccchhHHHHHHHhcCCChhhHHHHh-
Q 019824 210 SMEPDP---------------------------------------EG--KLPQETLDASGLKQCFQRKGFSAQELVALS- 247 (335)
Q Consensus 210 ~~~s~~---------------------------------------~~--~LP~p~~~~~~l~~~F~~~GLs~~EmVALs- 247 (335)
...++. ++ -+|+|..++.+|++.|.+||||++|||||+
T Consensus 173 ~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALia 252 (726)
T PRK15061 173 VWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIA 252 (726)
T ss_pred CcCCccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeecc
Confidence 864321 11 278999999999999999999999999995
Q ss_pred cccccCCCCC---------------------------------------------CCCcccchHHHHHHhhCCCccC---
Q 019824 248 GAHTLGTKGF---------------------------------------------GNPIVFDNSYYKILLEKPWQSS--- 279 (335)
Q Consensus 248 GaHTiG~~~~---------------------------------------------~tP~~FDN~Yyk~Ll~~~w~~~--- 279 (335)
||||||++|. .+|.+|||+||++|+.++|+..
T Consensus 253 GgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp 332 (726)
T PRK15061 253 GGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSP 332 (726)
T ss_pred CCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCC
Confidence 9999998641 2688999999999999888532
Q ss_pred CC-----------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCC
Q 019824 280 AG-----------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN--SGAR 331 (335)
Q Consensus 280 ~G-----------------------~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~--lgv~ 331 (335)
.| ....+||+||++|..||+++++|++||.|+++|+++|++||+||.+ +|.+
T Consensus 333 ~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~ 409 (726)
T PRK15061 333 AGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPK 409 (726)
T ss_pred CccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCch
Confidence 11 0136899999999999999999999999999999999999999966 4543
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.8e-46 Score=349.83 Aligned_cols=202 Identities=33% Similarity=0.535 Sum_probs=171.3
Q ss_pred CchHHHHHHHhhhcccccccCCCCCCCCcccccccCcccCCch--hHHHHHHHHHhhhcccCCCChhhHHhhhchhhhhc
Q 019824 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLN--KPLKILEKAKGDVNAIRPVSWADMIALGGAVAVSV 195 (335)
Q Consensus 118 ~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~E~~~p~N~gL~--~~~~~I~~iK~~le~~cpVScADiialAar~AV~~ 195 (335)
++++++|||+||||++|+...++|||||||++|..++||.|+. ..+..++.|+. ..||||||||||||+||+.
T Consensus 40 ~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l~~~~~i~~-----~~VScADiialAa~~AV~~ 114 (264)
T cd08201 40 QAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTLNFFVNFYS-----PRSSMADLIAMGVVTSVAS 114 (264)
T ss_pred cHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhccccceeecc-----CccCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999875 23333333321 2499999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHhcCCChhhHHHHhc-ccccCCCC---C--------------
Q 019824 196 CGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSG-AHTLGTKG---F-------------- 257 (335)
Q Consensus 196 ~GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~GLs~~EmVALsG-aHTiG~~~---~-------------- 257 (335)
||||.|+|++||+|++++.+.+ ||.|+.++++|++.|+++||+++|||+|+| |||||++| +
T Consensus 115 ~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~~~ 193 (264)
T cd08201 115 CGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDTVL 193 (264)
T ss_pred cCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCCCC
Confidence 9999999999999999988876 999999999999999999999999999995 99999975 1
Q ss_pred ---CCCcccchHHHHHHhhCCCccCCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 019824 258 ---GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN 327 (335)
Q Consensus 258 ---~tP~~FDN~Yyk~Ll~~~w~~~~G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~ 327 (335)
.+|.+|||+||.+++++.|...--++....+.||..++..+.-. .++..| |++.|.+..++.+.||.+
T Consensus 194 p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 194 QFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 24889999999999998875332223344688999999766543 346777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.4e-44 Score=341.87 Aligned_cols=211 Identities=28% Similarity=0.399 Sum_probs=180.0
Q ss_pred chHHHHHHHhhhcccccccCCCCCCCCc-ccc--cccCcccCC--chhHHHHHHHHHhhhcccC----CCChhhHHhhhc
Q 019824 119 KAASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPENAG--LNKPLKILEKAKGDVNAIR----PVSWADMIALGG 189 (335)
Q Consensus 119 ~aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N~g--L~~~~~~I~~iK~~le~~c----pVScADiialAa 189 (335)
..+.+|||+||+++||+..+.+||+||+ |++ |++++.|.+ |.+++.++++||+++.... .||+||+|+||+
T Consensus 29 ~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG 108 (297)
T cd08200 29 TVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGG 108 (297)
T ss_pred cHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHh
Confidence 5788999999999999999999999998 888 688999999 9999999999999986321 499999999999
Q ss_pred hhhhhcCCC-----CCCCCCCCCCCCCCCC--CC---CCCCCcc------------cchhHHHHHHHhcCCChhhHHHHh
Q 019824 190 AVAVSVCGG-----PNIPVPMGRLDSMEPD--PE---GKLPQET------------LDASGLKQCFQRKGFSAQELVALS 247 (335)
Q Consensus 190 r~AV~~~GG-----P~i~v~~GR~D~~~s~--~~---~~LP~p~------------~~~~~l~~~F~~~GLs~~EmVALs 247 (335)
..|||.+|| |.|++.+||.|...+. ++ ..+|.+. .+.+.|++.|.++|||++|||||+
T Consensus 109 ~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~ 188 (297)
T cd08200 109 CAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLV 188 (297)
T ss_pred HHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhhee
Confidence 999999999 9999999999998642 21 2344322 234679999999999999999999
Q ss_pred ccc-ccCCCCC--------CCCcccchHHHHHHhh--CCCccCC-------------CCCCccccccccccccChhHHHH
Q 019824 248 GAH-TLGTKGF--------GNPIVFDNSYYKILLE--KPWQSSA-------------GMSSMIGLPSDRALVEDDECLRW 303 (335)
Q Consensus 248 GaH-TiG~~~~--------~tP~~FDN~Yyk~Ll~--~~w~~~~-------------G~~~~~lL~SD~aL~~D~~t~~~ 303 (335)
||| ++|..+. .+|.+|||.||++|++ ..|++.. |...++++++|.+|.+|++.|++
T Consensus 189 Gg~r~lG~~~~~s~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ 268 (297)
T cd08200 189 GGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAV 268 (297)
T ss_pred cchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHH
Confidence 997 6888652 3799999999999996 4566432 22234568999999999999999
Q ss_pred HHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 019824 304 IKMYADN--QNMFFEDFKNAYVKLVNSG 329 (335)
Q Consensus 304 V~~yA~d--~~~F~~dFa~Am~KM~~lg 329 (335)
|+.||.| |++||+||++||.||+++.
T Consensus 269 ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 269 AEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 9999998 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2e-40 Score=345.48 Aligned_cols=237 Identities=28% Similarity=0.415 Sum_probs=199.1
Q ss_pred cccccCCCChhHHHHHHHHHHHHHhc----C-chHHHHHHHhhhcccccccCCCCCCCCc-ccc--cccCccc--CCchh
Q 019824 92 DLGAKAESGMSDYLLMKEEVTKVVSK----G-KAASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPEN--AGLNK 161 (335)
Q Consensus 92 ~l~~~~~~~~~~~~iVr~~V~~~~~~----~-~aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N--~gL~~ 161 (335)
+|.++.+..+.+|++|+++|+++..+ + ..+.|||++||+++||+..+++||+||+ |++ |++++.| .+|.+
T Consensus 415 ~~~wqdp~p~~~~~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~ 494 (716)
T TIGR00198 415 DLIWQDPLPPVDYTLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAK 494 (716)
T ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHH
Confidence 46778888888999999999886544 3 4678999999999999999999999998 888 7889999 89999
Q ss_pred HHHHHHHHHhhhcccCCCChhhHHhhhchhhhhcC---CCC--CCCCCCCCCCCCCC--CCCCCCCC-------------
Q 019824 162 PLKILEKAKGDVNAIRPVSWADMIALGGAVAVSVC---GGP--NIPVPMGRLDSMEP--DPEGKLPQ------------- 221 (335)
Q Consensus 162 ~~~~I~~iK~~le~~cpVScADiialAar~AV~~~---GGP--~i~v~~GR~D~~~s--~~~~~LP~------------- 221 (335)
++++|++||+++.. ..||+||+|+||+..|||.+ ||| .||+.+||.|.... ++++..|.
T Consensus 495 vl~~Le~Ik~~f~~-~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~ 573 (716)
T TIGR00198 495 VLAVLEKIQAEFAK-GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKR 573 (716)
T ss_pred HHHHHHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccc
Confidence 99999999999863 25999999999999999999 898 58999999999864 33333331
Q ss_pred --cccchhHHHHHHHhcCCChhhHHHHhcc-cccCCCCC--------CCCcccchHHHHHHhhC--CCccCC--------
Q 019824 222 --ETLDASGLKQCFQRKGFSAQELVALSGA-HTLGTKGF--------GNPIVFDNSYYKILLEK--PWQSSA-------- 280 (335)
Q Consensus 222 --p~~~~~~l~~~F~~~GLs~~EmVALsGa-HTiG~~~~--------~tP~~FDN~Yyk~Ll~~--~w~~~~-------- 280 (335)
.......|++.|.++|||++|||||+|| |++|..|. .+|.+|||.||++|++. .|++..
T Consensus 574 ~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~ 653 (716)
T TIGR00198 574 DYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSKHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEG 653 (716)
T ss_pred cccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeee
Confidence 1123456889999999999999999999 59999763 37999999999999984 465431
Q ss_pred -----CCCCccccccccccccChhHHHHHHHHhhCH--HHHHHHHHHHHHHHHhCC
Q 019824 281 -----GMSSMIGLPSDRALVEDDECLRWIKMYADNQ--NMFFEDFKNAYVKLVNSG 329 (335)
Q Consensus 281 -----G~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~--~~F~~dFa~Am~KM~~lg 329 (335)
|...+.++++|.+|.+|++.|++|+.||.|+ ++|++||++||.|++++|
T Consensus 654 ~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 654 GDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred ecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 2222334588999999999999999999997 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.2e-38 Score=330.85 Aligned_cols=238 Identities=27% Similarity=0.378 Sum_probs=192.2
Q ss_pred cccccCCCChhHHHHHH-HHHHH---HHh-cCc-hHHHHHHHhhhcccccccCCCCCCCCc-ccc--cccCcccC--Cch
Q 019824 92 DLGAKAESGMSDYLLMK-EEVTK---VVS-KGK-AASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPENA--GLN 160 (335)
Q Consensus 92 ~l~~~~~~~~~~~~iVr-~~V~~---~~~-~~~-aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N~--gL~ 160 (335)
+|.++.+..+..+.+|. ++|.. .+. .++ .+.|||++||+++||+..+.+||+||+ |++ |++++.|. +|.
T Consensus 421 ~~~wqdp~p~~~~~~~~~~di~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~ 500 (726)
T PRK15061 421 DLIWQDPVPAVDHELIDDADIAALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLA 500 (726)
T ss_pred cccccCCCCCCCcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHH
Confidence 35566666666666543 33333 222 343 688999999999999999999999998 998 68899999 899
Q ss_pred hHHHHHHHHHhhhccc---CC-CChhhHHhhhchhhhhcC---CC--CCCCCCCCCCCCCCC--CCC---CCCCCcc---
Q 019824 161 KPLKILEKAKGDVNAI---RP-VSWADMIALGGAVAVSVC---GG--PNIPVPMGRLDSMEP--DPE---GKLPQET--- 223 (335)
Q Consensus 161 ~~~~~I~~iK~~le~~---cp-VScADiialAar~AV~~~---GG--P~i~v~~GR~D~~~s--~~~---~~LP~p~--- 223 (335)
+++++|++||+++... .| ||+||+|+||+..|||.+ || |.||+.+||.|++.. +++ ..+|...
T Consensus 501 ~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfr 580 (726)
T PRK15061 501 KVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFR 580 (726)
T ss_pred HHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCcccc
Confidence 9999999999998543 23 999999999999999999 58 999999999999864 232 2456432
Q ss_pred ---------cchhHHHHHHHhcCCChhhHHHHhccc-ccCCCCC--------CCCcccchHHHHHHhh--CCCccCCC--
Q 019824 224 ---------LDASGLKQCFQRKGFSAQELVALSGAH-TLGTKGF--------GNPIVFDNSYYKILLE--KPWQSSAG-- 281 (335)
Q Consensus 224 ---------~~~~~l~~~F~~~GLs~~EmVALsGaH-TiG~~~~--------~tP~~FDN~Yyk~Ll~--~~w~~~~G-- 281 (335)
.....|++.|.++|||++|||||+||| ++|..+- .+|.+|||.||+||++ ..|++..+
T Consensus 581 ny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~ 660 (726)
T PRK15061 581 NYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDE 660 (726)
T ss_pred ccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCC
Confidence 234789999999999999999999997 7887642 3799999999999996 46764321
Q ss_pred -----------CCCccccccccccccChhHHHHHHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 019824 282 -----------MSSMIGLPSDRALVEDDECLRWIKMYADN--QNMFFEDFKNAYVKLVNSG 329 (335)
Q Consensus 282 -----------~~~~~lL~SD~aL~~D~~t~~~V~~yA~d--~~~F~~dFa~Am~KM~~lg 329 (335)
...+..+++|..|.+|++.|++|+.||.| +++|++||++||.|++++|
T Consensus 661 ~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 661 EVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred CceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 11122368899999999999999999998 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=297.28 Aligned_cols=262 Identities=27% Similarity=0.440 Sum_probs=225.4
Q ss_pred cccccchhhhhhccccccchh----hhcccccccCCCChhHHHHHHHHHHHHHhcC----------chHHHHHHHhhhcc
Q 019824 67 SNRRRRGLLLTATLPFLLPLH----EFVQDLGAKAESGMSDYLLMKEEVTKVVSKG----------KAASVLRLAFHDAG 132 (335)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~~----~~~~~l~~~~~~~~~~~~iVr~~V~~~~~~~----------~aa~lLRL~FHDc~ 132 (335)
++.+|.+|+...-|-.|.++. .+..+|.|..+....++..|..+++.++... -++-+|||+||-++
T Consensus 28 g~sn~dwwPN~L~l~iL~qh~~~snP~g~~fdYaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAG 107 (730)
T COG0376 28 GSSNRDWWPNQLNLKILHQHSSKSNPMGEDFDYAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAG 107 (730)
T ss_pred CCCCCCcCcccccchHHhhhhcccCCCccchHHHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccC
Confidence 566799999999988888763 4555688888888889999999999999852 36789999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcccCCchhHHHHHHHHHhhhcccCCCChhhHHhhhchhhhhcCCCCCCCCCCCCCC
Q 019824 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRPVSWADMIALGGAVAVSVCGGPNIPVPMGRLD 209 (335)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~le~~cpVScADiialAar~AV~~~GGP~i~v~~GR~D 209 (335)
||++.+++||.+ |..+| +..+|.|.+|+++..+|.+||+++. ..||+||+|.||+..|++.+|++++.+..||.|
T Consensus 108 TYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPIKkKYG--~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D 185 (730)
T COG0376 108 TYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPIKKKYG--RKISWADLIILAGNVALESMGFKTFGFAGGRED 185 (730)
T ss_pred ceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhHhHhhc--ccccHhHhhhhhchhhhhhcCCccccccCCCCc
Confidence 999999999986 66777 4579999999999999999999986 359999999999999999999999999999999
Q ss_pred CCCCCC--------------------------------------C--CCCCCcccchhHHHHHHHhcCCChhhHHHHh-c
Q 019824 210 SMEPDP--------------------------------------E--GKLPQETLDASGLKQCFQRKGFSAQELVALS-G 248 (335)
Q Consensus 210 ~~~s~~--------------------------------------~--~~LP~p~~~~~~l~~~F~~~GLs~~EmVALs-G 248 (335)
-..++. + +..|+|-.+..+++..|++|+++++|.|||+ |
T Consensus 186 ~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaG 265 (730)
T COG0376 186 VWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAG 265 (730)
T ss_pred CCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhc
Confidence 765432 1 2468888889999999999999999999998 6
Q ss_pred ccccCCCC---------------------------C------------------CCCcccchHHHHHHhhCCCccC---C
Q 019824 249 AHTLGTKG---------------------------F------------------GNPIVFDNSYYKILLEKPWQSS---A 280 (335)
Q Consensus 249 aHTiG~~~---------------------------~------------------~tP~~FDN~Yyk~Ll~~~w~~~---~ 280 (335)
|||+|.+| + .+|++|||+||.+|+...|... .
T Consensus 266 GHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPA 345 (730)
T COG0376 266 GHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPA 345 (730)
T ss_pred ccccccccCCCchhhcCCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCC
Confidence 99999864 0 2699999999999998877532 1
Q ss_pred C----------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhCCC
Q 019824 281 G----------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGA 330 (335)
Q Consensus 281 G----------------------~~~~~lL~SD~aL~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~lgv 330 (335)
| ....+||.+|.+|..||+++++.++|.+|++.|.+.|++||.||...+.
T Consensus 346 Ga~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDM 417 (730)
T COG0376 346 GAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDM 417 (730)
T ss_pred ccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccC
Confidence 1 0146799999999999999999999999999999999999999988654
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.7e-18 Score=170.40 Aligned_cols=236 Identities=29% Similarity=0.429 Sum_probs=181.7
Q ss_pred cccccCCCChhHHHHHHHHHHHHHhc----Cc-hHHHHHHHhhhcccccccCCCCCCCCc-ccc--cccCcccC--Cchh
Q 019824 92 DLGAKAESGMSDYLLMKEEVTKVVSK----GK-AASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPENA--GLNK 161 (335)
Q Consensus 92 ~l~~~~~~~~~~~~iVr~~V~~~~~~----~~-aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N~--gL~~ 161 (335)
+|.++.+....+|..|.++|..+-.+ ++ ...++-.+|..+.||.-.++.||.||. |++ .++++-|. .|.+
T Consensus 432 ~liWQDpiP~vd~~l~d~di~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~k 511 (730)
T COG0376 432 DLIWQDPLPAVDYELVDADIAALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAK 511 (730)
T ss_pred hhhccCCCCccccccchHHHHHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHH
Confidence 57788888888888888877665554 33 567999999999999999999999986 666 47788884 4778
Q ss_pred HHHHHHHHHhhhcccCCCChhhHHhhhchhhhhcC---CCC--CCCCCCCCCCCCCC--CCC----------C--C---C
Q 019824 162 PLKILEKAKGDVNAIRPVSWADMIALGGAVAVSVC---GGP--NIPVPMGRLDSMEP--DPE----------G--K---L 219 (335)
Q Consensus 162 ~~~~I~~iK~~le~~cpVScADiialAar~AV~~~---GGP--~i~v~~GR~D~~~s--~~~----------~--~---L 219 (335)
.+.+++.|++++. .+||.||+|+|++..+|+.+ +|- .+|+.+||.|+... +.+ + + -
T Consensus 512 vl~~le~iq~~fn--kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~ 589 (730)
T COG0376 512 VLAVLEKIQKEFN--KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKK 589 (730)
T ss_pred HHHHHHHHHHHhc--CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccC
Confidence 9999999999987 46999999999999999986 565 46888999999752 211 1 0 0
Q ss_pred CCcccchhHHHHHHHhcCCChhhHHHHhccc-ccCCCC-------C-CCCcccchHHHHHHhh--CCCccCC--------
Q 019824 220 PQETLDASGLKQCFQRKGFSAQELVALSGAH-TLGTKG-------F-GNPIVFDNSYYKILLE--KPWQSSA-------- 280 (335)
Q Consensus 220 P~p~~~~~~l~~~F~~~GLs~~EmVALsGaH-TiG~~~-------~-~tP~~FDN~Yyk~Ll~--~~w~~~~-------- 280 (335)
.....+..-|+++-+-.+|+..||++|+||. .+|..+ | ..|.++.|.||.||++ -.|.+..
T Consensus 590 ~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~s~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg 669 (730)
T COG0376 590 DYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEG 669 (730)
T ss_pred CCcCCHHHHHHHHHHHhccCCccceEEEcceEeeccCCCCCccceeccCcccccchhhhhhhhccceeeeccccccceec
Confidence 0111223457788888999999999999884 566543 1 3589999999999986 3576542
Q ss_pred -----CCCCccccccccccccChhHHHHHHHHhh--CHHHHHHHHHHHHHHHHhCC
Q 019824 281 -----GMSSMIGLPSDRALVEDDECLRWIKMYAD--NQNMFFEDFKNAYVKLVNSG 329 (335)
Q Consensus 281 -----G~~~~~lL~SD~aL~~D~~t~~~V~~yA~--d~~~F~~dFa~Am~KM~~lg 329 (335)
|-.....-..|..+-+++..|.+.+.||. +++.|.+||+.||.|..++.
T Consensus 670 ~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 670 RDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 11123345678777889999999999996 47899999999999999874
No 19
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=39.27 E-value=6.5 Score=36.58 Aligned_cols=13 Identities=54% Similarity=1.035 Sum_probs=10.9
Q ss_pred ccccccccccccC
Q 019824 7 SSLCGCSTAYYSS 19 (335)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (335)
..|+||+++||+.
T Consensus 2 ~~l~gCqsaYY~a 14 (201)
T PF11172_consen 2 LLLTGCQSAYYSA 14 (201)
T ss_pred chHHHhHHHHHHH
Confidence 3589999999975
No 20
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=30.75 E-value=18 Score=28.06 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=8.6
Q ss_pred CCChhhHHHH------hcccccCCC--CCCCCcccchHHHH
Q 019824 237 GFSAQELVAL------SGAHTLGTK--GFGNPIVFDNSYYK 269 (335)
Q Consensus 237 GLs~~EmVAL------sGaHTiG~~--~~~tP~~FDN~Yyk 269 (335)
|++.+|+=+- =.||..+.. ..+.|..|||.|+.
T Consensus 2 G~aaqeIs~PLk~sFlH~Ghg~~~~k~~Wg~~~~idn~yl~ 42 (66)
T PF09027_consen 2 GVAAQEISVPLKNSFLHTGHGMGNPKTCWGSPSEIDNNYLN 42 (66)
T ss_dssp -SSSTT---S-SS------------SS---SS----TTT--
T ss_pred CcchhhhcccccccccccCCcCCCCccccCChhhhhhhhhc
Confidence 6677776442 245666532 36799999999997
No 21
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=29.28 E-value=37 Score=25.14 Aligned_cols=30 Identities=30% Similarity=0.656 Sum_probs=23.0
Q ss_pred HHhhhc---hhhhhcCCCCCCCCCCCCCCCCCC
Q 019824 184 MIALGG---AVAVSVCGGPNIPVPMGRLDSMEP 213 (335)
Q Consensus 184 iialAa---r~AV~~~GGP~i~v~~GR~D~~~s 213 (335)
|++||+ .|-+..|.||.+++-.||.-...+
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 456666 467788999999999999865543
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=22.27 E-value=93 Score=30.94 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=38.5
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCC--CCC----CcccchhHHHHHHHhcCC----------ChhhHHHHhccccc
Q 019824 192 AVSVCGGPNIPVPMGRLDSMEPDPEG--KLP----QETLDASGLKQCFQRKGF----------SAQELVALSGAHTL 252 (335)
Q Consensus 192 AV~~~GGP~i~v~~GR~D~~~s~~~~--~LP----~p~~~~~~l~~~F~~~GL----------s~~EmVALsGaHTi 252 (335)
+...+|-..|..+.||.|-......+ ..+ +.-..+.++.+.|++.|+ +.+|+.+|.|+|.+
T Consensus 164 aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 164 ACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 33445778899999998763211110 111 123456778888888875 46788889999844
No 23
>PTZ00411 transaldolase-like protein; Provisional
Probab=20.82 E-value=92 Score=31.20 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=37.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCC--CCCCCC----cccchhHHHHHHHhcCC----------ChhhHHHHhccccc
Q 019824 195 VCGGPNIPVPMGRLDSMEPDP--EGKLPQ----ETLDASGLKQCFQRKGF----------SAQELVALSGAHTL 252 (335)
Q Consensus 195 ~~GGP~i~v~~GR~D~~~s~~--~~~LP~----p~~~~~~l~~~F~~~GL----------s~~EmVALsGaHTi 252 (335)
.+|-..|..++||.|...-.+ ....+. .-..+.++...|++.|+ +.+|+..|.|+|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 347778899999986543211 111111 12346678888888875 56788889999854
Done!