Query 019825
Match_columns 335
No_of_seqs 155 out of 1927
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 2.8E-10 9.7E-15 90.9 6.2 70 229-298 35-105 (137)
2 3b5d_A Multidrug transporter E 98.6 8.3E-08 2.8E-12 73.8 7.8 69 229-297 35-104 (110)
3 2i68_A Protein EMRE; transmemb 98.3 6.1E-07 2.1E-11 71.5 5.7 70 48-123 33-103 (137)
4 3b5d_A Multidrug transporter E 98.3 2E-06 6.8E-11 66.0 7.3 69 49-123 34-103 (110)
5 3rko_J NADH-quinone oxidoreduc 67.2 50 0.0017 26.9 11.0 24 266-289 128-151 (184)
6 1pw4_A Glycerol-3-phosphate tr 53.0 1.3E+02 0.0043 26.9 20.7 14 16-29 118-131 (451)
7 2zxe_G FXYD10, phospholemman-l 43.6 8.6 0.00029 26.2 1.2 20 281-300 25-44 (74)
8 2jo1_A Phospholemman; FXYD1, N 34.1 11 0.00038 25.4 0.5 18 281-298 22-39 (72)
9 3l1l_A Arginine/agmatine antip 33.5 99 0.0034 28.1 7.3 42 259-301 389-431 (445)
10 4aps_A DI-OR tripeptide H+ sym 24.4 3.9E+02 0.013 24.0 13.2 17 166-182 64-80 (491)
11 4djk_A Probable glutamate/gamm 23.6 3.3E+02 0.011 25.0 9.2 16 281-296 449-464 (511)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.03 E-value=2.8e-10 Score=90.92 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCceehhhh-hhHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhhheeecc
Q 019825 229 AGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 298 (335)
Q Consensus 229 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~~~l~~~~~~ge~~~~~~~~G~~lii~g~~l~~~~~ 298 (335)
.+++++++++++|.+++++.+++.+..+ ..+.|+++.+++++++||++++.+++|++++++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5666888999999999999999999999 899999999999999999999999999999999999986543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.64 E-value=8.3e-08 Score=73.82 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCceehhhh-hhHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhhheeec
Q 019825 229 AGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 297 (335)
Q Consensus 229 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~~~l~~~~~~ge~~~~~~~~G~~lii~g~~l~~~~ 297 (335)
.++++.+++++++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|++++++|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4555778999999999999999999888 89999999999999999999999999999999999988653
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.33 E-value=6.1e-07 Score=71.49 Aligned_cols=70 Identities=14% Similarity=0.301 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHH-hhhhHHHHHHHHHHhccccccccccCCcceeehHhHHHHhHHHHHh
Q 019825 48 FFSAIVGTSLTQYFFLLGIQYTSATFACAF-INMVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 123 (335)
Q Consensus 48 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pl~~~lla~~~~~e~~~~~~~~~~~k~~g~~l~~~Gv~li~~ 123 (335)
.+.+++...+++.++.+++++.+++.+..+ .++.|+++.++++++++|++++.+ ++|+.+.++|+.++..
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 356666667999999999999999999888 899999999999999999999998 9999999999999875
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.27 E-value=2e-06 Score=66.01 Aligned_cols=69 Identities=14% Similarity=0.318 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHH-hhhhHHHHHHHHHHhccccccccccCCcceeehHhHHHHhHHHHHh
Q 019825 49 FSAIVGTSLTQYFFLLGIQYTSATFACAF-INMVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 123 (335)
Q Consensus 49 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pl~~~lla~~~~~e~~~~~~~~~~~k~~g~~l~~~Gv~li~~ 123 (335)
+.+++...+++.++.+++++.|.+.+..+ ..+.|+++.+++++++||++++.+ ++|+.+.++|+.++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 45666667899999999999999999888 789999999999999999999997 9999999999999864
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=67.19 E-value=50 Score=26.90 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=19.9
Q ss_pred HHHHHHhcCccchhHHHHHHHHHH
Q 019825 266 MFDIPLLHERLHIGSLLGSITVII 289 (335)
Q Consensus 266 l~~~~~~ge~~~~~~~~G~~lii~ 289 (335)
-+|..++++..-+.++.+.++.++
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788999999999999888654
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=53.00 E-value=1.3e+02 Score=26.93 Aligned_cols=14 Identities=14% Similarity=0.066 Sum_probs=9.8
Q ss_pred CchHHHHHHHHHHH
Q 019825 16 PHCQCFIFRHLSYK 29 (335)
Q Consensus 16 ~p~~~~~~R~~~a~ 29 (335)
+...+...|.+.+.
T Consensus 118 ~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 118 SIAVMFVLLFLCGW 131 (451)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 45567777887776
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=43.63 E-value=8.6 Score=26.19 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhheeecccc
Q 019825 281 LLGSITVIIGLYILLWGKNK 300 (335)
Q Consensus 281 ~~G~~lii~g~~l~~~~~~~ 300 (335)
+++.++.+.|+.++..+|=|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45667777888877655433
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=34.06 E-value=11 Score=25.41 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhheeecc
Q 019825 281 LLGSITVIIGLYILLWGK 298 (335)
Q Consensus 281 ~~G~~lii~g~~l~~~~~ 298 (335)
++++++.+.|+.++...+
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 455666777777776543
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=33.51 E-value=99 Score=28.10 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH-hcCccchhHHHHHHHHHHhhhheeeccccc
Q 019825 259 LVQIMAAMFDIPL-LHERLHIGSLLGSITVIIGLYILLWGKNKE 301 (335)
Q Consensus 259 ~~pv~~~l~~~~~-~ge~~~~~~~~G~~lii~g~~l~~~~~~~~ 301 (335)
.-++++.+...+. +... ....+.|.+.++.|+.++.+.++++
T Consensus 389 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 389 AVTTIAFLYCIWAVVGSG-AKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444444443333 3222 2345567777888887776544433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=24.37 E-value=3.9e+02 Score=24.01 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHhhcc
Q 019825 166 TLLWASWFPIQSYIGKR 182 (335)
Q Consensus 166 a~~~a~~~~~~k~~~~~ 182 (335)
.+...+......++.++
T Consensus 64 ~~~~~~~~~~~g~l~dr 80 (491)
T 4aps_A 64 ASMVYLSGTIGGFVADR 80 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44445555555555444
No 11
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=23.58 E-value=3.3e+02 Score=24.99 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhheee
Q 019825 281 LLGSITVIIGLYILLW 296 (335)
Q Consensus 281 ~~G~~lii~g~~l~~~ 296 (335)
..+..+++.++..+.+
T Consensus 449 ~~~~~~~~~~i~~~~~ 464 (511)
T 4djk_A 449 LVVSFLVVLALPFILY 464 (511)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555443
Done!